Query 011654
Match_columns 480
No_of_seqs 357 out of 3221
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02353 probable UDP-glucose 100.0 1E-99 2E-104 790.6 56.8 473 1-473 1-473 (473)
2 COG1004 Ugd Predicted UDP-gluc 100.0 2.4E-94 5.3E-99 708.0 45.3 412 2-453 1-414 (414)
3 COG0677 WecC UDP-N-acetyl-D-ma 100.0 4.2E-94 9E-99 702.4 39.5 418 2-467 10-435 (436)
4 KOG2666 UDP-glucose/GDP-mannos 100.0 3.3E-93 7.1E-98 671.2 41.8 480 1-480 1-481 (481)
5 PRK15182 Vi polysaccharide bio 100.0 6.1E-82 1.3E-86 652.6 48.2 406 2-453 7-419 (425)
6 TIGR03026 NDP-sugDHase nucleot 100.0 2.4E-79 5.2E-84 635.7 49.9 406 2-448 1-411 (411)
7 PRK11064 wecC UDP-N-acetyl-D-m 100.0 9.7E-78 2.1E-82 621.6 46.8 394 1-446 3-415 (415)
8 PRK15057 UDP-glucose 6-dehydro 100.0 5.6E-78 1.2E-82 616.1 44.0 374 2-429 1-376 (388)
9 PF03721 UDPG_MGDP_dh_N: UDP-g 100.0 1.8E-37 3.9E-42 286.4 18.8 182 2-194 1-185 (185)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 7E-32 1.5E-36 261.5 26.0 249 2-300 1-262 (286)
11 PLN02858 fructose-bisphosphate 100.0 2.7E-30 5.9E-35 298.4 39.9 382 2-464 5-443 (1378)
12 PRK15461 NADH-dependent gamma- 100.0 1.1E-28 2.5E-33 245.3 25.0 250 1-300 1-263 (296)
13 PRK11559 garR tartronate semia 100.0 3.3E-28 7.1E-33 242.3 27.0 251 1-301 2-264 (296)
14 TIGR01505 tartro_sem_red 2-hyd 100.0 2.9E-28 6.3E-33 242.1 26.3 248 3-300 1-260 (291)
15 KOG0409 Predicted dehydrogenas 100.0 3.1E-28 6.8E-33 231.4 21.9 241 2-290 36-289 (327)
16 PRK15059 tartronate semialdehy 100.0 1.1E-27 2.3E-32 237.4 26.4 247 2-299 1-259 (292)
17 TIGR01692 HIBADH 3-hydroxyisob 100.0 1.3E-27 2.8E-32 237.0 25.8 245 6-300 1-264 (288)
18 PRK12490 6-phosphogluconate de 99.9 7.4E-25 1.6E-29 218.3 27.2 267 2-318 1-291 (299)
19 PLN02858 fructose-bisphosphate 99.9 4.7E-25 1E-29 255.2 28.5 252 1-300 324-588 (1378)
20 PLN02350 phosphogluconate dehy 99.9 1.1E-24 2.4E-29 227.7 28.6 252 1-295 6-285 (493)
21 PF03720 UDPG_MGDP_dh_C: UDP-g 99.9 1.2E-26 2.5E-31 195.2 11.1 106 328-452 1-106 (106)
22 PF00984 UDPG_MGDP_dh: UDP-glu 99.9 7.3E-26 1.6E-30 185.4 12.2 96 209-306 1-96 (96)
23 PRK09599 6-phosphogluconate de 99.9 4.4E-23 9.6E-28 205.8 27.7 267 2-318 1-292 (301)
24 PRK00094 gpsA NAD(P)H-dependen 99.9 2.1E-23 4.5E-28 210.4 23.5 281 1-315 1-323 (325)
25 TIGR00872 gnd_rel 6-phosphoglu 99.9 1.4E-21 3E-26 194.6 26.6 266 2-318 1-290 (298)
26 PTZ00142 6-phosphogluconate de 99.9 1.2E-21 2.6E-26 204.8 24.5 210 1-252 1-219 (470)
27 COG0240 GpsA Glycerol-3-phosph 99.9 5.2E-21 1.1E-25 187.4 21.3 220 1-253 1-240 (329)
28 PF03446 NAD_binding_2: NAD bi 99.9 5.7E-21 1.2E-25 173.5 14.6 153 1-200 1-155 (163)
29 TIGR00873 gnd 6-phosphoglucona 99.9 4.7E-20 1E-24 192.9 22.4 206 3-251 1-215 (467)
30 PRK14618 NAD(P)H-dependent gly 99.9 1.3E-19 2.9E-24 183.1 23.8 276 1-316 4-322 (328)
31 PRK06129 3-hydroxyacyl-CoA deh 99.8 9E-18 2E-22 168.1 24.9 247 1-290 2-265 (308)
32 PRK09287 6-phosphogluconate de 99.8 3.9E-18 8.4E-23 177.8 23.0 196 12-251 1-207 (459)
33 PRK14619 NAD(P)H-dependent gly 99.8 4.6E-18 1E-22 170.2 20.1 250 2-316 5-300 (308)
34 PRK12557 H(2)-dependent methyl 99.8 1.9E-17 4.2E-22 166.8 23.8 263 2-302 1-287 (342)
35 TIGR03376 glycerol3P_DH glycer 99.8 1.1E-17 2.3E-22 168.5 20.0 217 3-253 1-258 (342)
36 PRK12439 NAD(P)H-dependent gly 99.8 2.3E-17 5E-22 167.3 22.4 220 1-254 7-247 (341)
37 PTZ00345 glycerol-3-phosphate 99.8 1.2E-17 2.6E-22 169.3 20.1 219 2-254 12-268 (365)
38 PRK08229 2-dehydropantoate 2-r 99.8 6.9E-17 1.5E-21 164.1 21.6 261 1-297 2-307 (341)
39 COG1023 Gnd Predicted 6-phosph 99.7 9.3E-16 2E-20 141.6 23.6 209 2-258 1-216 (300)
40 PRK14620 NAD(P)H-dependent gly 99.7 1.4E-15 3E-20 153.6 26.0 215 2-249 1-239 (326)
41 PRK07531 bifunctional 3-hydrox 99.7 3.1E-16 6.7E-21 166.5 21.8 207 1-255 4-221 (495)
42 PRK09260 3-hydroxybutyryl-CoA 99.7 1.4E-16 2.9E-21 158.2 16.9 214 1-254 1-220 (288)
43 PRK07066 3-hydroxybutyryl-CoA 99.7 1.2E-15 2.6E-20 152.3 19.2 211 1-255 7-224 (321)
44 PRK08507 prephenate dehydrogen 99.7 1.4E-14 3.1E-19 142.7 24.7 202 2-253 1-208 (275)
45 PLN02712 arogenate dehydrogena 99.7 3.4E-13 7.4E-18 147.2 37.7 166 2-211 53-222 (667)
46 PRK07417 arogenate dehydrogena 99.7 1.4E-14 3E-19 143.1 23.3 186 2-233 1-192 (279)
47 PRK08268 3-hydroxy-acyl-CoA de 99.7 6.9E-15 1.5E-19 156.2 21.2 203 1-254 7-225 (507)
48 PRK12921 2-dehydropantoate 2-r 99.6 2.2E-14 4.8E-19 143.3 23.0 212 2-244 1-234 (305)
49 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 5.7E-16 1.2E-20 139.7 10.0 150 3-179 1-152 (157)
50 PRK08293 3-hydroxybutyryl-CoA 99.6 2E-14 4.4E-19 142.5 21.7 213 1-254 3-224 (287)
51 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.6 1.4E-14 3E-19 153.4 21.0 206 1-254 5-223 (503)
52 PRK06130 3-hydroxybutyryl-CoA 99.6 9.7E-14 2.1E-18 139.3 24.8 210 1-254 4-219 (311)
53 PRK08655 prephenate dehydrogen 99.6 3.5E-13 7.5E-18 140.9 28.4 202 2-252 1-203 (437)
54 PRK07530 3-hydroxybutyryl-CoA 99.6 5.1E-14 1.1E-18 140.0 21.2 208 1-254 4-222 (292)
55 PRK05808 3-hydroxybutyryl-CoA 99.6 2.4E-13 5.3E-18 134.5 24.4 207 1-254 3-221 (282)
56 PRK06035 3-hydroxyacyl-CoA deh 99.6 4.7E-14 1E-18 140.2 18.8 206 1-254 3-224 (291)
57 PRK07819 3-hydroxybutyryl-CoA 99.6 1.6E-13 3.5E-18 135.8 20.2 207 1-254 5-225 (286)
58 PLN02545 3-hydroxybutyryl-CoA 99.6 2.1E-13 4.6E-18 135.8 19.8 209 1-254 4-222 (295)
59 TIGR01724 hmd_rel H2-forming N 99.5 1.1E-12 2.3E-17 128.0 21.6 155 2-199 1-186 (341)
60 PRK11199 tyrA bifunctional cho 99.5 1.4E-12 3.1E-17 133.8 23.6 224 1-318 98-324 (374)
61 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.2E-12 2.6E-17 128.8 19.1 206 1-254 3-221 (307)
62 PRK06522 2-dehydropantoate 2-r 99.5 1.7E-12 3.7E-17 129.6 20.1 209 2-244 1-231 (304)
63 PLN02688 pyrroline-5-carboxyla 99.5 2.9E-12 6.2E-17 125.7 20.0 194 2-253 1-203 (266)
64 COG0362 Gnd 6-phosphogluconate 99.5 1.9E-12 4.1E-17 127.8 16.9 207 2-252 4-220 (473)
65 PRK07502 cyclohexadienyl dehyd 99.5 1.3E-11 2.9E-16 123.6 23.4 167 2-209 7-179 (307)
66 PRK07679 pyrroline-5-carboxyla 99.4 1.3E-11 2.8E-16 122.0 20.5 196 1-253 3-208 (279)
67 PRK11730 fadB multifunctional 99.4 7.2E-12 1.6E-16 138.5 20.3 204 1-253 313-529 (715)
68 PRK06249 2-dehydropantoate 2-r 99.4 3.6E-11 7.7E-16 120.8 23.6 256 1-290 5-294 (313)
69 PRK06545 prephenate dehydrogen 99.4 2.7E-11 5.9E-16 123.8 21.9 178 2-219 1-185 (359)
70 PRK11880 pyrroline-5-carboxyla 99.4 4.1E-11 8.8E-16 117.6 21.7 197 1-252 2-203 (267)
71 COG0287 TyrA Prephenate dehydr 99.4 2.1E-10 4.5E-15 112.5 25.5 176 1-220 3-183 (279)
72 TIGR02437 FadB fatty oxidation 99.4 1.7E-11 3.7E-16 135.3 20.0 205 1-254 313-530 (714)
73 TIGR02440 FadJ fatty oxidation 99.4 2.5E-11 5.3E-16 134.0 20.8 204 1-252 304-520 (699)
74 PRK12491 pyrroline-5-carboxyla 99.4 3.9E-11 8.5E-16 117.9 20.1 201 2-252 3-205 (272)
75 PRK11154 fadJ multifunctional 99.4 2.4E-11 5.2E-16 134.4 20.1 203 1-252 309-525 (708)
76 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.6E-11 3.5E-16 135.8 18.7 202 1-251 335-549 (737)
77 PF02737 3HCDH_N: 3-hydroxyacy 99.4 5.4E-12 1.2E-16 116.3 11.8 170 3-208 1-179 (180)
78 PRK06476 pyrroline-5-carboxyla 99.4 3.3E-11 7.2E-16 117.7 17.8 186 2-252 1-194 (258)
79 PRK14806 bifunctional cyclohex 99.3 1.4E-10 3E-15 129.8 21.8 170 1-210 3-178 (735)
80 PLN02256 arogenate dehydrogena 99.3 7.2E-10 1.6E-14 110.4 24.4 166 1-211 36-206 (304)
81 PRK07680 late competence prote 99.3 2.9E-10 6.3E-15 112.0 20.5 196 2-252 1-203 (273)
82 PRK08269 3-hydroxybutyryl-CoA 99.3 2.4E-10 5.2E-15 114.5 19.3 195 12-255 1-219 (314)
83 PRK08818 prephenate dehydrogen 99.3 1.1E-09 2.5E-14 111.3 22.8 157 2-219 5-166 (370)
84 PLN02712 arogenate dehydrogena 99.2 3.3E-09 7.2E-14 116.2 26.8 163 2-211 370-539 (667)
85 COG1893 ApbA Ketopantoate redu 99.2 1.1E-09 2.5E-14 109.2 20.4 209 2-242 1-231 (307)
86 KOG2653 6-phosphogluconate deh 99.2 2.6E-10 5.7E-15 111.1 15.1 207 2-252 7-224 (487)
87 PRK06928 pyrroline-5-carboxyla 99.2 1.2E-09 2.5E-14 107.9 18.2 199 1-252 1-206 (277)
88 PRK05708 2-dehydropantoate 2-r 99.2 5.3E-10 1.2E-14 111.8 16.0 207 2-243 3-229 (305)
89 PRK07634 pyrroline-5-carboxyla 99.2 2.6E-09 5.7E-14 103.3 20.4 196 2-252 5-207 (245)
90 COG0345 ProC Pyrroline-5-carbo 99.2 2.9E-09 6.3E-14 103.0 18.8 199 1-252 1-202 (266)
91 PF03807 F420_oxidored: NADP o 99.1 2.9E-10 6.3E-15 93.5 8.9 87 3-125 1-92 (96)
92 KOG2304 3-hydroxyacyl-CoA dehy 99.1 3.4E-10 7.3E-15 104.2 9.7 213 1-255 11-236 (298)
93 PTZ00431 pyrroline carboxylate 99.1 7.3E-09 1.6E-13 101.3 19.3 193 2-252 4-198 (260)
94 PF02153 PDH: Prephenate dehyd 99.1 2.8E-08 6.1E-13 97.0 22.7 178 16-233 1-183 (258)
95 TIGR01915 npdG NADPH-dependent 99.1 6.9E-09 1.5E-13 98.8 16.8 99 2-127 1-101 (219)
96 TIGR01763 MalateDH_bact malate 99.0 2.7E-09 5.9E-14 106.5 11.2 120 2-136 2-126 (305)
97 TIGR00745 apbA_panE 2-dehydrop 99.0 2.6E-08 5.7E-13 98.8 17.9 201 11-243 1-223 (293)
98 KOG2305 3-hydroxyacyl-CoA dehy 99.0 5.4E-09 1.2E-13 96.3 11.3 208 2-254 4-224 (313)
99 PF10727 Rossmann-like: Rossma 99.0 1.3E-09 2.9E-14 94.0 6.8 92 2-128 11-105 (127)
100 PRK05479 ketol-acid reductoiso 98.9 8.6E-08 1.9E-12 95.9 19.7 151 2-200 18-174 (330)
101 COG2085 Predicted dinucleotide 98.9 2.9E-08 6.2E-13 91.8 14.6 164 1-209 1-181 (211)
102 COG4007 Predicted dehydrogenas 98.9 4.4E-07 9.6E-12 85.3 20.2 247 1-290 1-276 (340)
103 KOG2711 Glycerol-3-phosphate d 98.9 7.4E-08 1.6E-12 94.2 15.6 189 2-221 22-229 (372)
104 PRK12480 D-lactate dehydrogena 98.8 1.1E-07 2.3E-12 96.1 15.7 105 2-144 147-251 (330)
105 PRK06223 malate dehydrogenase; 98.8 4.8E-08 1E-12 97.9 11.4 119 1-134 2-125 (307)
106 cd05294 LDH-like_MDH_nadp A la 98.7 5.2E-08 1.1E-12 97.6 9.6 120 2-133 1-128 (309)
107 PRK07574 formate dehydrogenase 98.7 2.7E-07 5.9E-12 94.6 14.4 109 2-144 193-301 (385)
108 PLN03139 formate dehydrogenase 98.7 3.3E-07 7.2E-12 93.9 14.0 109 2-144 200-308 (386)
109 PRK08605 D-lactate dehydrogena 98.7 1.3E-07 2.8E-12 95.6 10.8 107 2-144 147-253 (332)
110 PRK13243 glyoxylate reductase; 98.7 3.3E-07 7.1E-12 92.8 13.5 107 2-144 151-257 (333)
111 TIGR00465 ilvC ketol-acid redu 98.6 4E-06 8.6E-11 83.9 19.8 152 2-200 4-160 (314)
112 cd05292 LDH_2 A subgroup of L- 98.6 9.5E-07 2.1E-11 88.5 14.2 111 2-133 1-121 (308)
113 PRK13403 ketol-acid reductoiso 98.6 3E-07 6.6E-12 90.9 10.3 90 2-128 17-107 (335)
114 cd01065 NAD_bind_Shikimate_DH 98.6 1.8E-07 4E-12 83.7 8.1 111 2-144 20-131 (155)
115 PRK06436 glycerate dehydrogena 98.6 5.6E-07 1.2E-11 89.6 11.8 104 2-144 123-226 (303)
116 PF00056 Ldh_1_N: lactate/mala 98.5 1E-06 2.2E-11 77.9 12.0 119 2-134 1-124 (141)
117 PRK13304 L-aspartate dehydroge 98.5 6.3E-07 1.4E-11 87.9 11.7 108 1-144 1-112 (265)
118 cd01339 LDH-like_MDH L-lactate 98.5 8.2E-07 1.8E-11 88.7 10.9 117 4-133 1-120 (300)
119 PRK13302 putative L-aspartate 98.5 1E-06 2.3E-11 86.5 11.3 109 2-145 7-116 (271)
120 PF14833 NAD_binding_11: NAD-b 98.5 1.1E-06 2.4E-11 75.7 9.6 89 210-300 1-99 (122)
121 PRK06444 prephenate dehydrogen 98.4 6.9E-05 1.5E-09 69.9 21.7 190 2-319 1-193 (197)
122 PF02558 ApbA: Ketopantoate re 98.4 7.9E-07 1.7E-11 79.3 8.3 114 4-141 1-114 (151)
123 PF01408 GFO_IDH_MocA: Oxidore 98.4 2.8E-06 6E-11 72.5 11.2 71 2-90 1-74 (120)
124 COG0111 SerA Phosphoglycerate 98.4 3.8E-06 8.2E-11 84.4 13.2 132 2-175 143-278 (324)
125 PRK13581 D-3-phosphoglycerate 98.4 5.4E-06 1.2E-10 89.0 14.8 107 2-144 141-247 (526)
126 cd00300 LDH_like L-lactate deh 98.4 4E-06 8.7E-11 83.7 12.7 117 4-134 1-121 (300)
127 TIGR01327 PGDH D-3-phosphoglyc 98.4 6.3E-06 1.4E-10 88.5 14.8 108 2-144 139-246 (525)
128 PF02826 2-Hacid_dh_C: D-isome 98.4 6.4E-06 1.4E-10 75.8 12.7 108 2-144 37-144 (178)
129 cd05293 LDH_1 A subgroup of L- 98.3 4.2E-06 9.1E-11 83.8 12.1 118 2-133 4-125 (312)
130 PRK15469 ghrA bifunctional gly 98.3 1.9E-06 4.2E-11 86.3 9.6 107 2-144 137-243 (312)
131 cd05291 HicDH_like L-2-hydroxy 98.3 9.1E-06 2E-10 81.4 14.3 119 2-134 1-123 (306)
132 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 2.2E-05 4.9E-10 73.6 15.3 41 2-44 29-69 (200)
133 cd05297 GH4_alpha_glucosidase_ 98.3 8.5E-06 1.8E-10 85.2 12.6 81 2-90 1-86 (423)
134 TIGR02853 spore_dpaA dipicolin 98.2 5.3E-06 1.1E-10 82.2 10.1 96 2-134 152-247 (287)
135 PTZ00082 L-lactate dehydrogena 98.2 8E-06 1.7E-10 82.2 11.5 109 2-124 7-126 (321)
136 PF07991 IlvN: Acetohydroxy ac 98.2 7.1E-06 1.5E-10 73.0 9.4 89 2-127 5-95 (165)
137 TIGR00112 proC pyrroline-5-car 98.2 6.1E-05 1.3E-09 73.0 16.4 175 26-252 9-185 (245)
138 cd00650 LDH_MDH_like NAD-depen 98.2 9.2E-06 2E-10 79.6 10.8 120 4-136 1-127 (263)
139 PRK14194 bifunctional 5,10-met 98.2 5.5E-06 1.2E-10 81.7 8.5 73 2-129 160-233 (301)
140 PRK15076 alpha-galactosidase; 98.2 1.9E-05 4.1E-10 82.6 12.6 81 1-89 1-86 (431)
141 KOG2380 Prephenate dehydrogena 98.2 4E-05 8.7E-10 75.1 13.6 152 2-200 53-213 (480)
142 PLN02928 oxidoreductase family 98.1 2.6E-05 5.6E-10 79.4 12.9 120 2-144 160-279 (347)
143 PRK11790 D-3-phosphoglycerate 98.1 2.7E-05 5.9E-10 81.0 13.2 105 2-144 152-256 (409)
144 PRK00257 erythronate-4-phospha 98.1 1.1E-05 2.5E-10 82.6 10.1 108 2-144 117-224 (381)
145 PLN02602 lactate dehydrogenase 98.1 2.7E-05 5.9E-10 79.1 12.5 120 2-135 38-161 (350)
146 cd05290 LDH_3 A subgroup of L- 98.1 2.7E-05 5.8E-10 77.8 12.0 119 3-136 1-127 (307)
147 PRK08306 dipicolinate synthase 98.1 2.2E-05 4.7E-10 78.2 11.2 95 2-133 153-247 (296)
148 PRK08410 2-hydroxyacid dehydro 98.1 7.3E-05 1.6E-09 75.0 15.0 103 2-143 146-248 (311)
149 PTZ00117 malate dehydrogenase; 98.1 1.7E-05 3.7E-10 79.9 10.0 116 2-133 6-127 (319)
150 PRK15409 bifunctional glyoxyla 98.1 6.8E-05 1.5E-09 75.6 13.7 108 2-144 146-253 (323)
151 COG1052 LdhA Lactate dehydroge 98.0 9E-05 2E-09 74.5 14.3 107 2-144 147-253 (324)
152 PRK00066 ldh L-lactate dehydro 98.0 4.1E-05 8.9E-10 76.9 11.7 115 2-134 7-128 (315)
153 COG0039 Mdh Malate/lactate deh 98.0 4.7E-05 1E-09 75.5 11.4 121 2-136 1-126 (313)
154 PRK06141 ornithine cyclodeamin 98.0 2.8E-05 6.1E-10 78.2 9.5 75 2-89 126-200 (314)
155 TIGR02371 ala_DH_arch alanine 98.0 3.7E-05 8.1E-10 77.6 10.0 100 2-133 129-228 (325)
156 PRK15438 erythronate-4-phospha 97.9 3.8E-05 8.3E-10 78.6 9.7 108 2-144 117-224 (378)
157 PLN02306 hydroxypyruvate reduc 97.9 0.00026 5.6E-09 72.9 15.1 122 2-143 166-288 (386)
158 COG1748 LYS9 Saccharopine dehy 97.9 6.6E-05 1.4E-09 76.6 10.5 135 1-159 1-159 (389)
159 PF01113 DapB_N: Dihydrodipico 97.9 0.00011 2.3E-09 63.5 10.3 73 2-86 1-75 (124)
160 PRK06932 glycerate dehydrogena 97.9 0.00012 2.7E-09 73.5 12.1 103 2-144 148-250 (314)
161 PRK14188 bifunctional 5,10-met 97.9 3.8E-05 8.2E-10 75.9 8.2 71 2-128 159-231 (296)
162 PRK00048 dihydrodipicolinate r 97.8 0.00011 2.3E-09 71.8 10.0 67 1-87 1-69 (257)
163 PRK06487 glycerate dehydrogena 97.8 0.00024 5.1E-09 71.5 12.6 102 2-144 149-250 (317)
164 cd05213 NAD_bind_Glutamyl_tRNA 97.8 0.00012 2.7E-09 73.4 10.3 71 2-89 179-249 (311)
165 PRK05442 malate dehydrogenase; 97.8 0.00018 4E-09 72.4 11.3 123 1-136 4-138 (326)
166 cd01337 MDH_glyoxysomal_mitoch 97.8 0.00024 5.2E-09 71.0 12.0 114 2-133 1-122 (310)
167 TIGR01759 MalateDH-SF1 malate 97.8 0.0002 4.3E-09 72.1 11.4 119 2-135 4-136 (323)
168 PRK13303 L-aspartate dehydroge 97.8 0.00014 3E-09 71.3 9.9 108 1-144 1-112 (265)
169 cd01338 MDH_choloroplast_like 97.8 0.00023 5.1E-09 71.6 11.7 120 2-134 3-134 (322)
170 TIGR00036 dapB dihydrodipicoli 97.7 0.00035 7.6E-09 68.5 12.4 74 1-87 1-77 (266)
171 PRK14179 bifunctional 5,10-met 97.7 7.2E-05 1.6E-09 73.3 7.4 73 2-129 159-232 (284)
172 COG1712 Predicted dinucleotide 97.7 0.00025 5.5E-09 66.1 10.5 105 2-142 1-109 (255)
173 TIGR00507 aroE shikimate 5-deh 97.7 0.00019 4.1E-09 70.6 10.5 112 2-144 118-229 (270)
174 PF03446 NAD_binding_2: NAD bi 97.7 9.3E-05 2E-09 67.0 7.6 108 325-465 2-118 (163)
175 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00054 1.2E-08 61.4 11.6 90 2-131 24-114 (162)
176 TIGR00936 ahcY adenosylhomocys 97.7 0.00057 1.2E-08 70.6 13.1 89 2-130 196-285 (406)
177 PF02826 2-Hacid_dh_C: D-isome 97.6 0.00035 7.5E-09 64.3 9.6 104 319-456 31-138 (178)
178 PRK05476 S-adenosyl-L-homocyst 97.6 0.00042 9E-09 72.0 11.1 88 2-129 213-301 (425)
179 PRK08618 ornithine cyclodeamin 97.6 0.00039 8.6E-09 70.2 10.6 100 2-133 128-227 (325)
180 PTZ00075 Adenosylhomocysteinas 97.6 0.0003 6.6E-09 73.5 9.8 88 2-129 255-343 (476)
181 PRK07340 ornithine cyclodeamin 97.6 0.00043 9.2E-09 69.3 10.3 99 2-134 126-224 (304)
182 COG0569 TrkA K+ transport syst 97.6 0.00025 5.5E-09 67.7 8.3 41 2-44 1-41 (225)
183 PRK04148 hypothetical protein; 97.6 0.00048 1E-08 59.8 9.2 90 2-123 18-107 (134)
184 PF10100 DUF2338: Uncharacteri 97.6 0.0078 1.7E-07 61.0 19.0 229 1-254 1-283 (429)
185 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00062 1.3E-08 70.5 11.4 87 2-128 203-290 (413)
186 smart00859 Semialdhyde_dh Semi 97.5 0.00029 6.2E-09 60.5 7.4 98 3-129 1-101 (122)
187 TIGR01921 DAP-DH diaminopimela 97.5 0.00092 2E-08 66.8 11.9 67 2-90 4-72 (324)
188 PTZ00325 malate dehydrogenase; 97.5 0.00077 1.7E-08 67.7 11.5 118 1-136 8-133 (321)
189 COG0111 SerA Phosphoglycerate 97.5 0.00032 6.9E-09 70.6 8.6 101 321-455 139-243 (324)
190 TIGR01757 Malate-DH_plant mala 97.5 0.0017 3.6E-08 66.8 13.9 121 2-135 45-177 (387)
191 PLN00112 malate dehydrogenase 97.5 0.0011 2.3E-08 69.3 12.6 122 2-136 101-234 (444)
192 TIGR00518 alaDH alanine dehydr 97.5 0.00058 1.3E-08 70.2 10.6 104 3-133 169-273 (370)
193 PRK11579 putative oxidoreducta 97.5 0.0013 2.8E-08 67.1 12.9 68 2-90 5-76 (346)
194 PRK04207 glyceraldehyde-3-phos 97.5 0.00069 1.5E-08 68.9 10.6 86 1-88 1-88 (341)
195 PF01488 Shikimate_DH: Shikima 97.5 0.00032 6.9E-09 61.5 7.2 72 2-90 13-87 (135)
196 PLN02494 adenosylhomocysteinas 97.5 0.00058 1.3E-08 71.3 10.2 87 2-128 255-342 (477)
197 COG0673 MviM Predicted dehydro 97.5 0.00057 1.2E-08 69.2 10.1 93 1-129 3-100 (342)
198 PRK05225 ketol-acid reductoiso 97.5 0.00024 5.3E-09 73.2 7.3 89 2-127 37-131 (487)
199 PRK06407 ornithine cyclodeamin 97.5 0.0012 2.6E-08 66.0 11.8 101 2-133 118-218 (301)
200 TIGR01772 MDH_euk_gproteo mala 97.5 0.001 2.2E-08 66.6 11.2 113 3-133 1-121 (312)
201 PLN02819 lysine-ketoglutarate 97.4 0.00092 2E-08 76.4 12.0 76 1-91 569-661 (1042)
202 PRK05086 malate dehydrogenase; 97.4 0.0012 2.6E-08 66.2 11.6 115 2-135 1-125 (312)
203 cd00704 MDH Malate dehydrogena 97.4 0.00058 1.3E-08 68.8 9.3 120 2-134 1-132 (323)
204 COG2423 Predicted ornithine cy 97.4 0.0014 3.1E-08 65.8 11.8 122 3-159 132-253 (330)
205 PF01118 Semialdhyde_dh: Semia 97.4 0.00018 4E-09 61.7 4.6 95 3-128 1-98 (121)
206 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00091 2E-08 69.9 10.6 70 2-89 181-251 (417)
207 KOG0069 Glyoxylate/hydroxypyru 97.4 0.0035 7.6E-08 62.8 13.8 106 2-144 163-270 (336)
208 cd05296 GH4_P_beta_glucosidase 97.4 0.0023 5E-08 66.7 13.1 80 2-89 1-86 (419)
209 PRK06823 ornithine cyclodeamin 97.4 0.0016 3.6E-08 65.3 11.5 100 2-133 129-228 (315)
210 PRK13301 putative L-aspartate 97.4 0.0018 3.9E-08 62.7 11.2 66 2-87 3-71 (267)
211 cd01336 MDH_cytoplasmic_cytoso 97.4 0.0013 2.7E-08 66.5 10.7 121 2-133 3-133 (325)
212 PRK02318 mannitol-1-phosphate 97.4 0.0012 2.7E-08 68.1 10.8 44 2-47 1-45 (381)
213 PRK06046 alanine dehydrogenase 97.4 0.0016 3.4E-08 65.9 11.3 100 2-133 130-229 (326)
214 PLN00106 malate dehydrogenase 97.3 0.0014 2.9E-08 66.0 10.3 113 2-132 19-139 (323)
215 PRK08291 ectoine utilization p 97.3 0.0011 2.4E-08 67.1 9.7 76 2-89 133-208 (330)
216 PRK07574 formate dehydrogenase 97.3 0.001 2.2E-08 68.4 9.4 102 321-455 189-294 (385)
217 TIGR01327 PGDH D-3-phosphoglyc 97.3 0.0014 3.1E-08 70.5 10.6 102 320-455 134-239 (525)
218 PF13460 NAD_binding_10: NADH( 97.3 0.001 2.2E-08 60.9 8.2 98 4-128 1-99 (183)
219 PRK09496 trkA potassium transp 97.3 0.00069 1.5E-08 71.5 8.0 73 2-88 1-75 (453)
220 TIGR02354 thiF_fam2 thiamine b 97.3 0.00099 2.1E-08 62.4 8.0 32 2-35 22-54 (200)
221 PLN03139 formate dehydrogenase 97.3 0.0014 3.1E-08 67.4 9.8 102 321-455 196-301 (386)
222 PRK07589 ornithine cyclodeamin 97.3 0.0012 2.5E-08 67.1 9.0 102 2-133 130-231 (346)
223 TIGR01771 L-LDH-NAD L-lactate 97.2 0.0023 5E-08 63.8 10.9 114 6-134 1-119 (299)
224 PF02423 OCD_Mu_crystall: Orni 97.2 0.0015 3.3E-08 65.6 9.6 101 2-133 129-230 (313)
225 COG2910 Putative NADH-flavin r 97.2 0.0021 4.5E-08 58.4 9.0 72 2-89 1-73 (211)
226 PRK10206 putative oxidoreducta 97.2 0.0017 3.7E-08 66.2 9.7 72 1-90 1-76 (344)
227 PF02056 Glyco_hydro_4: Family 97.2 0.0012 2.5E-08 60.7 7.6 77 3-87 1-82 (183)
228 PRK00045 hemA glutamyl-tRNA re 97.2 0.0024 5.3E-08 66.9 11.0 70 2-89 183-253 (423)
229 PRK00436 argC N-acetyl-gamma-g 97.2 0.0014 2.9E-08 66.8 8.8 98 1-128 2-100 (343)
230 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0018 3.9E-08 63.6 9.1 107 325-463 1-117 (286)
231 TIGR01850 argC N-acetyl-gamma- 97.2 0.0015 3.3E-08 66.6 8.8 97 2-128 1-100 (346)
232 TIGR01758 MDH_euk_cyt malate d 97.2 0.0029 6.3E-08 63.8 10.7 120 3-135 1-132 (324)
233 PRK13243 glyoxylate reductase; 97.1 0.0028 6.1E-08 64.2 10.3 100 321-455 147-250 (333)
234 PRK12480 D-lactate dehydrogena 97.1 0.002 4.4E-08 65.1 9.1 98 321-454 143-243 (330)
235 PLN02928 oxidoreductase family 97.1 0.0025 5.4E-08 65.0 9.6 116 320-456 155-273 (347)
236 PLN00203 glutamyl-tRNA reducta 97.1 0.0012 2.5E-08 70.7 7.4 73 2-89 267-340 (519)
237 TIGR02853 spore_dpaA dipicolin 97.1 0.0038 8.3E-08 61.9 10.5 125 313-471 140-268 (287)
238 TIGR01761 thiaz-red thiazoliny 97.1 0.0043 9.4E-08 62.9 11.0 109 2-144 4-114 (343)
239 TIGR00561 pntA NAD(P) transhyd 97.1 0.0035 7.5E-08 66.6 10.6 113 2-129 165-286 (511)
240 TIGR02992 ectoine_eutC ectoine 97.1 0.0034 7.4E-08 63.5 10.2 75 2-89 130-205 (326)
241 PRK14194 bifunctional 5,10-met 97.0 0.0047 1E-07 61.1 10.3 79 318-447 153-231 (301)
242 PLN02968 Probable N-acetyl-gam 97.0 0.0022 4.8E-08 66.0 8.2 96 1-129 38-136 (381)
243 PTZ00142 6-phosphogluconate de 97.0 0.0051 1.1E-07 65.1 11.0 122 325-472 2-132 (470)
244 PRK13581 D-3-phosphoglycerate 97.0 0.0039 8.5E-08 67.2 10.4 100 321-455 137-240 (526)
245 PRK09310 aroDE bifunctional 3- 97.0 0.0038 8.2E-08 66.4 10.1 69 2-89 333-401 (477)
246 PRK15461 NADH-dependent gamma- 97.0 0.0042 9E-08 62.0 9.8 109 325-465 2-119 (296)
247 PRK15409 bifunctional glyoxyla 97.0 0.0048 1E-07 62.2 10.2 100 321-455 142-246 (323)
248 COG0059 IlvC Ketol-acid reduct 97.0 0.0041 9E-08 60.7 9.2 90 2-128 19-110 (338)
249 PRK08410 2-hydroxyacid dehydro 97.0 0.0035 7.7E-08 62.9 9.1 97 321-455 142-242 (311)
250 PRK08605 D-lactate dehydrogena 96.9 0.0047 1E-07 62.6 9.8 93 321-448 143-237 (332)
251 PRK15438 erythronate-4-phospha 96.9 0.0069 1.5E-07 62.2 11.0 99 320-456 112-218 (378)
252 PRK11861 bifunctional prephena 96.9 0.036 7.8E-07 61.7 17.5 131 82-233 1-136 (673)
253 PLN02350 phosphogluconate dehy 96.9 0.0064 1.4E-07 64.6 11.0 120 324-468 6-134 (493)
254 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0063 1.4E-07 60.0 10.2 91 2-128 2-96 (285)
255 PRK12490 6-phosphogluconate de 96.9 0.0068 1.5E-07 60.5 10.3 107 326-465 2-118 (299)
256 PRK00258 aroE shikimate 5-dehy 96.9 0.0046 1E-07 61.0 8.9 73 2-90 124-197 (278)
257 KOG1495 Lactate dehydrogenase 96.9 0.0059 1.3E-07 58.5 9.1 78 2-91 21-101 (332)
258 PRK11559 garR tartronate semia 96.8 0.0063 1.4E-07 60.5 9.8 96 325-452 3-101 (296)
259 PRK13403 ketol-acid reductoiso 96.8 0.0049 1.1E-07 61.4 8.7 94 321-447 13-106 (335)
260 PF03435 Saccharop_dh: Sacchar 96.8 0.0008 1.7E-08 69.6 3.5 120 4-139 1-134 (386)
261 PRK14106 murD UDP-N-acetylmura 96.8 0.024 5.1E-07 59.9 14.6 117 2-145 6-134 (450)
262 cd05212 NAD_bind_m-THF_DH_Cycl 96.8 0.013 2.9E-07 51.5 10.6 79 318-447 22-100 (140)
263 PRK12549 shikimate 5-dehydroge 96.8 0.0049 1.1E-07 61.1 8.8 75 2-89 128-203 (284)
264 PRK09599 6-phosphogluconate de 96.8 0.0094 2E-07 59.6 10.8 108 326-466 2-119 (301)
265 PRK06436 glycerate dehydrogena 96.8 0.0045 9.8E-08 61.8 8.5 97 321-455 119-219 (303)
266 PRK00257 erythronate-4-phospha 96.8 0.013 2.9E-07 60.3 12.0 100 319-456 111-218 (381)
267 COG0002 ArgC Acetylglutamate s 96.8 0.0043 9.3E-08 61.9 7.9 76 1-88 2-80 (349)
268 PRK14189 bifunctional 5,10-met 96.8 0.0045 9.9E-08 60.8 7.8 71 2-127 159-230 (285)
269 cd05298 GH4_GlvA_pagL_like Gly 96.8 0.006 1.3E-07 63.9 9.2 77 2-87 1-83 (437)
270 PRK00683 murD UDP-N-acetylmura 96.7 0.0099 2.1E-07 62.3 10.8 112 2-145 4-128 (418)
271 PRK13940 glutamyl-tRNA reducta 96.7 0.0037 7.9E-08 65.2 7.4 71 2-89 182-253 (414)
272 PRK14179 bifunctional 5,10-met 96.7 0.0098 2.1E-07 58.5 9.9 79 318-447 152-230 (284)
273 PLN03075 nicotianamine synthas 96.7 0.012 2.7E-07 58.1 10.6 133 2-157 125-262 (296)
274 PRK15059 tartronate semialdehy 96.7 0.0065 1.4E-07 60.5 8.6 106 326-464 2-116 (292)
275 TIGR00872 gnd_rel 6-phosphoglu 96.7 0.012 2.6E-07 58.7 10.6 114 326-472 2-124 (298)
276 PRK15469 ghrA bifunctional gly 96.7 0.0053 1.1E-07 61.6 7.9 101 321-455 133-236 (312)
277 PRK03659 glutathione-regulated 96.7 0.0031 6.8E-08 69.1 6.8 72 2-89 401-475 (601)
278 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.005 1.1E-07 56.0 7.0 53 2-89 45-98 (168)
279 PRK06199 ornithine cyclodeamin 96.7 0.01 2.2E-07 61.2 10.0 76 2-88 156-233 (379)
280 PF03059 NAS: Nicotianamine sy 96.7 0.012 2.7E-07 57.6 10.1 105 2-129 122-232 (276)
281 cd05197 GH4_glycoside_hydrolas 96.7 0.0074 1.6E-07 63.1 9.1 79 2-88 1-84 (425)
282 PRK11790 D-3-phosphoglycerate 96.7 0.0075 1.6E-07 62.9 9.2 99 321-455 148-249 (409)
283 TIGR01505 tartro_sem_red 2-hyd 96.7 0.0087 1.9E-07 59.4 9.3 107 326-464 1-116 (291)
284 PRK14175 bifunctional 5,10-met 96.6 0.0073 1.6E-07 59.5 8.3 53 2-89 159-212 (286)
285 PLN02306 hydroxypyruvate reduc 96.6 0.01 2.2E-07 61.2 9.8 114 321-455 162-282 (386)
286 PRK06718 precorrin-2 dehydroge 96.6 0.017 3.6E-07 54.3 10.3 33 2-36 11-43 (202)
287 PRK08306 dipicolinate synthase 96.6 0.019 4.2E-07 57.2 11.3 112 319-464 147-261 (296)
288 PF02254 TrkA_N: TrkA-N domain 96.6 0.014 2.9E-07 49.3 8.7 40 4-45 1-40 (116)
289 PRK08300 acetaldehyde dehydrog 96.6 0.014 3.1E-07 57.8 10.0 90 2-128 5-102 (302)
290 PRK09424 pntA NAD(P) transhydr 96.6 0.021 4.6E-07 60.8 11.9 110 2-128 166-286 (509)
291 CHL00194 ycf39 Ycf39; Provisio 96.6 0.0041 8.9E-08 62.5 6.3 73 2-88 1-74 (317)
292 COG0373 HemA Glutamyl-tRNA red 96.6 0.015 3.3E-07 60.0 10.3 70 2-89 179-249 (414)
293 COG1486 CelF Alpha-galactosida 96.5 0.0095 2.1E-07 61.6 8.7 78 2-87 4-86 (442)
294 PRK06487 glycerate dehydrogena 96.5 0.0084 1.8E-07 60.4 8.1 96 321-456 145-244 (317)
295 PRK10669 putative cation:proto 96.5 0.0058 1.3E-07 66.5 7.3 41 3-45 419-459 (558)
296 PF01262 AlaDh_PNT_C: Alanine 96.5 0.0058 1.3E-07 55.6 6.2 111 2-128 21-140 (168)
297 COG1052 LdhA Lactate dehydroge 96.5 0.02 4.4E-07 57.6 10.5 102 319-455 141-246 (324)
298 PRK03369 murD UDP-N-acetylmura 96.5 0.049 1.1E-06 58.3 14.1 114 2-145 13-143 (488)
299 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.016 3.6E-07 53.8 9.1 74 2-89 29-108 (194)
300 PRK01710 murD UDP-N-acetylmura 96.4 0.045 9.7E-07 58.0 13.0 112 2-144 15-142 (458)
301 TIGR00873 gnd 6-phosphoglucona 96.3 0.026 5.6E-07 59.8 10.7 120 326-472 1-129 (467)
302 PLN02256 arogenate dehydrogena 96.3 0.015 3.3E-07 58.1 8.5 113 302-449 15-129 (304)
303 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.11 2.4E-06 52.2 14.7 125 310-465 165-293 (311)
304 COG0686 Ald Alanine dehydrogen 96.3 0.024 5.1E-07 55.7 9.2 95 3-127 170-268 (371)
305 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.032 6.8E-07 50.3 9.6 91 309-451 22-112 (160)
306 TIGR01723 hmd_TIGR 5,10-methen 96.3 0.11 2.5E-06 50.2 13.6 108 64-199 125-233 (340)
307 PRK00141 murD UDP-N-acetylmura 96.3 0.043 9.3E-07 58.4 12.1 37 2-40 16-52 (473)
308 PRK14188 bifunctional 5,10-met 96.3 0.028 6.2E-07 55.7 9.9 80 318-448 152-231 (296)
309 PRK06932 glycerate dehydrogena 96.3 0.014 3.1E-07 58.6 8.0 96 321-455 144-243 (314)
310 PRK14874 aspartate-semialdehyd 96.3 0.013 2.7E-07 59.6 7.7 69 1-88 1-73 (334)
311 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.026 5.7E-07 50.8 8.8 72 2-128 37-109 (160)
312 KOG0068 D-3-phosphoglycerate d 96.2 0.086 1.9E-06 52.4 12.9 106 2-143 147-252 (406)
313 PRK00421 murC UDP-N-acetylmura 96.2 0.05 1.1E-06 57.7 12.4 112 2-145 8-133 (461)
314 PRK01438 murD UDP-N-acetylmura 96.2 0.071 1.5E-06 56.8 13.5 33 2-36 17-49 (480)
315 PRK10792 bifunctional 5,10-met 96.2 0.018 3.9E-07 56.6 8.1 71 2-127 160-231 (285)
316 TIGR01692 HIBADH 3-hydroxyisob 96.2 0.017 3.7E-07 57.2 8.1 98 345-464 7-113 (288)
317 cd05211 NAD_bind_Glu_Leu_Phe_V 96.2 0.037 8E-07 52.5 9.8 33 2-36 24-57 (217)
318 PRK03562 glutathione-regulated 96.1 0.022 4.7E-07 62.8 9.3 70 2-88 401-474 (621)
319 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.048 1E-06 52.1 10.5 118 2-160 32-161 (227)
320 PRK00961 H(2)-dependent methyl 96.1 0.18 3.9E-06 48.7 13.9 108 64-199 127-235 (342)
321 KOG1502 Flavonol reductase/cin 96.1 0.04 8.7E-07 55.0 10.0 81 2-92 7-91 (327)
322 PRK06719 precorrin-2 dehydroge 96.1 0.035 7.6E-07 49.9 8.8 31 2-34 14-44 (157)
323 PRK14191 bifunctional 5,10-met 96.1 0.024 5.1E-07 55.8 8.2 71 2-127 158-229 (285)
324 PRK06270 homoserine dehydrogen 96.1 0.057 1.2E-06 54.9 11.4 119 2-144 3-143 (341)
325 KOG3124 Pyrroline-5-carboxylat 96.0 0.17 3.6E-06 48.6 13.3 147 2-199 1-153 (267)
326 PRK12475 thiamine/molybdopteri 96.0 0.023 5.1E-07 57.6 8.2 34 2-37 25-59 (338)
327 TIGR03026 NDP-sugDHase nucleot 96.0 0.034 7.4E-07 58.1 9.6 110 326-450 2-123 (411)
328 PRK07417 arogenate dehydrogena 96.0 0.023 4.9E-07 56.1 7.9 93 326-450 2-94 (279)
329 KOG1683 Hydroxyacyl-CoA dehydr 96.0 0.0091 2E-07 59.7 4.9 106 12-133 1-112 (380)
330 PRK09496 trkA potassium transp 96.0 0.06 1.3E-06 56.8 11.5 41 2-44 232-272 (453)
331 PRK01390 murD UDP-N-acetylmura 96.0 0.084 1.8E-06 56.0 12.6 39 2-42 10-48 (460)
332 COG0771 MurD UDP-N-acetylmuram 96.0 0.04 8.7E-07 57.6 9.7 117 1-145 7-136 (448)
333 cd01487 E1_ThiF_like E1_ThiF_l 95.9 0.015 3.2E-07 53.3 5.7 32 3-36 1-33 (174)
334 PRK14170 bifunctional 5,10-met 95.9 0.064 1.4E-06 52.7 10.4 79 318-447 151-229 (284)
335 PRK14169 bifunctional 5,10-met 95.9 0.064 1.4E-06 52.7 10.3 79 318-447 150-228 (282)
336 PRK03803 murD UDP-N-acetylmura 95.9 0.11 2.5E-06 54.8 13.0 111 3-145 8-134 (448)
337 PRK05479 ketol-acid reductoiso 95.9 0.042 9.2E-07 55.3 9.2 95 321-448 14-109 (330)
338 cd05191 NAD_bind_amino_acid_DH 95.9 0.049 1.1E-06 43.6 7.9 32 2-34 24-55 (86)
339 PTZ00075 Adenosylhomocysteinas 95.8 0.059 1.3E-06 56.7 10.4 100 312-449 242-343 (476)
340 PRK05472 redox-sensing transcr 95.8 0.011 2.4E-07 55.9 4.6 69 2-88 85-156 (213)
341 PRK14190 bifunctional 5,10-met 95.8 0.063 1.4E-06 52.8 9.9 80 317-447 151-230 (284)
342 PRK14173 bifunctional 5,10-met 95.8 0.078 1.7E-06 52.2 10.5 79 318-447 149-227 (287)
343 PRK04663 murD UDP-N-acetylmura 95.8 0.14 2.9E-06 54.1 13.1 113 1-145 7-134 (438)
344 COG4408 Uncharacterized protei 95.8 0.76 1.6E-05 45.6 16.9 228 1-254 4-285 (431)
345 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.032 6.9E-07 50.1 7.2 105 326-449 1-106 (157)
346 COG1063 Tdh Threonine dehydrog 95.7 0.1 2.2E-06 53.3 11.6 41 3-44 171-211 (350)
347 PRK14182 bifunctional 5,10-met 95.7 0.087 1.9E-06 51.7 10.5 78 319-447 152-229 (282)
348 PRK14189 bifunctional 5,10-met 95.7 0.084 1.8E-06 52.0 10.4 79 318-447 152-230 (285)
349 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.018 3.8E-07 53.3 5.4 112 326-453 2-125 (185)
350 PRK14186 bifunctional 5,10-met 95.7 0.084 1.8E-06 52.3 10.3 79 318-447 152-230 (297)
351 PRK06349 homoserine dehydrogen 95.7 0.046 1E-06 57.4 9.0 68 2-88 4-82 (426)
352 PRK14180 bifunctional 5,10-met 95.7 0.084 1.8E-06 51.9 10.2 79 318-447 152-230 (282)
353 PRK02705 murD UDP-N-acetylmura 95.7 0.14 3.1E-06 54.2 12.8 33 3-37 2-34 (459)
354 PRK14172 bifunctional 5,10-met 95.7 0.089 1.9E-06 51.6 10.3 78 318-446 152-229 (278)
355 KOG0068 D-3-phosphoglycerate d 95.7 0.051 1.1E-06 53.9 8.5 101 319-453 141-244 (406)
356 PRK09287 6-phosphogluconate de 95.7 0.055 1.2E-06 57.2 9.5 110 346-472 2-120 (459)
357 PRK14192 bifunctional 5,10-met 95.7 0.054 1.2E-06 53.5 8.9 53 2-89 160-213 (283)
358 PRK02472 murD UDP-N-acetylmura 95.7 0.19 4.1E-06 53.0 13.7 33 2-36 6-38 (447)
359 PRK02006 murD UDP-N-acetylmura 95.6 0.13 2.8E-06 55.2 12.4 33 2-36 8-40 (498)
360 PRK08664 aspartate-semialdehyd 95.6 0.062 1.4E-06 54.9 9.5 80 2-88 4-86 (349)
361 PRK14166 bifunctional 5,10-met 95.6 0.091 2E-06 51.6 10.2 79 318-447 151-229 (282)
362 TIGR01470 cysG_Nterm siroheme 95.6 0.093 2E-06 49.3 10.0 67 2-88 10-79 (205)
363 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.1 2.2E-06 48.3 9.8 100 321-449 59-158 (197)
364 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.086 1.9E-06 46.4 8.9 69 3-126 30-99 (140)
365 PRK14176 bifunctional 5,10-met 95.6 0.056 1.2E-06 53.2 8.5 71 2-127 165-236 (287)
366 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.074 1.6E-06 49.2 8.8 88 2-128 63-157 (197)
367 PRK09260 3-hydroxybutyryl-CoA 95.6 0.082 1.8E-06 52.4 9.9 121 325-457 2-127 (288)
368 TIGR01546 GAPDH-II_archae glyc 95.5 0.03 6.6E-07 56.4 6.7 85 4-90 1-87 (333)
369 PF02629 CoA_binding: CoA bind 95.5 0.027 5.8E-07 46.1 5.3 66 2-88 4-72 (96)
370 PRK14183 bifunctional 5,10-met 95.5 0.053 1.2E-06 53.2 8.2 71 2-127 158-229 (281)
371 PRK12409 D-amino acid dehydrog 95.5 0.018 3.8E-07 60.0 5.2 34 1-36 1-34 (410)
372 PRK14177 bifunctional 5,10-met 95.5 0.11 2.5E-06 51.0 10.4 79 318-447 153-231 (284)
373 PRK08644 thiamine biosynthesis 95.5 0.042 9E-07 52.0 7.2 33 2-36 29-62 (212)
374 PRK08293 3-hydroxybutyryl-CoA 95.5 0.11 2.3E-06 51.5 10.5 129 325-465 4-141 (287)
375 PRK11908 NAD-dependent epimera 95.5 0.024 5.1E-07 57.6 5.9 41 1-42 1-42 (347)
376 cd01080 NAD_bind_m-THF_DH_Cycl 95.5 0.11 2.4E-06 47.3 9.5 82 317-449 37-118 (168)
377 PF00070 Pyr_redox: Pyridine n 95.5 0.026 5.6E-07 44.4 4.8 33 3-37 1-33 (80)
378 PRK14187 bifunctional 5,10-met 95.4 0.12 2.5E-06 51.2 10.3 78 318-446 154-231 (294)
379 TIGR01851 argC_other N-acetyl- 95.4 0.058 1.3E-06 53.7 8.2 57 2-88 2-59 (310)
380 PRK04308 murD UDP-N-acetylmura 95.4 0.19 4.2E-06 53.0 12.8 114 2-145 6-136 (445)
381 COG1064 AdhP Zn-dependent alco 95.4 0.12 2.6E-06 52.1 10.4 41 2-44 168-208 (339)
382 COG2344 AT-rich DNA-binding pr 95.4 0.029 6.2E-07 51.1 5.4 68 2-88 85-156 (211)
383 PRK01581 speE spermidine synth 95.4 0.88 1.9E-05 46.4 16.6 142 2-158 152-302 (374)
384 PRK00711 D-amino acid dehydrog 95.4 0.02 4.4E-07 59.6 5.1 34 2-37 1-34 (416)
385 PRK03806 murD UDP-N-acetylmura 95.4 0.26 5.7E-06 51.8 13.5 32 3-36 8-39 (438)
386 TIGR01087 murD UDP-N-acetylmur 95.4 0.18 3.9E-06 53.0 12.2 110 3-145 1-128 (433)
387 PRK14193 bifunctional 5,10-met 95.3 0.14 3E-06 50.5 10.3 79 318-447 152-232 (284)
388 TIGR02356 adenyl_thiF thiazole 95.3 0.059 1.3E-06 50.5 7.6 33 2-36 22-55 (202)
389 PF03807 F420_oxidored: NADP o 95.3 0.058 1.3E-06 43.7 6.7 88 326-447 1-94 (96)
390 TIGR00978 asd_EA aspartate-sem 95.3 0.068 1.5E-06 54.4 8.5 34 2-36 1-36 (341)
391 PF00670 AdoHcyase_NAD: S-aden 95.3 0.68 1.5E-05 41.7 13.7 121 311-467 10-133 (162)
392 PRK11863 N-acetyl-gamma-glutam 95.3 0.067 1.4E-06 53.5 8.1 31 1-32 2-33 (313)
393 PRK14171 bifunctional 5,10-met 95.3 0.15 3.2E-06 50.3 10.3 78 319-447 154-231 (288)
394 PRK14175 bifunctional 5,10-met 95.2 0.13 2.7E-06 50.8 9.8 82 318-450 152-233 (286)
395 TIGR01082 murC UDP-N-acetylmur 95.2 0.19 4E-06 53.2 11.8 110 3-145 1-125 (448)
396 PRK05671 aspartate-semialdehyd 95.2 0.067 1.5E-06 54.2 8.0 70 1-88 4-76 (336)
397 PRK07679 pyrroline-5-carboxyla 95.2 0.18 3.9E-06 49.7 10.9 102 323-457 2-109 (279)
398 PRK14183 bifunctional 5,10-met 95.2 0.16 3.5E-06 49.8 10.3 78 319-447 152-229 (281)
399 PRK14982 acyl-ACP reductase; P 95.2 0.11 2.5E-06 52.5 9.5 69 2-89 156-226 (340)
400 cd01075 NAD_bind_Leu_Phe_Val_D 95.2 0.4 8.7E-06 44.9 12.6 108 319-464 23-137 (200)
401 PRK14190 bifunctional 5,10-met 95.1 0.094 2E-06 51.6 8.4 71 2-127 159-230 (284)
402 cd01065 NAD_bind_Shikimate_DH 95.1 0.16 3.5E-06 44.9 9.4 112 320-462 15-135 (155)
403 TIGR01809 Shik-DH-AROM shikima 95.1 0.068 1.5E-06 52.9 7.5 72 2-89 126-201 (282)
404 PRK14573 bifunctional D-alanyl 95.1 0.21 4.5E-06 56.9 12.4 110 3-144 6-129 (809)
405 PF13380 CoA_binding_2: CoA bi 95.0 0.11 2.3E-06 44.3 7.6 97 2-144 1-101 (116)
406 PRK08040 putative semialdehyde 95.0 0.057 1.2E-06 54.7 6.8 90 2-128 5-98 (336)
407 PRK14173 bifunctional 5,10-met 95.0 0.1 2.2E-06 51.5 8.3 70 2-126 156-226 (287)
408 PLN02516 methylenetetrahydrofo 95.0 0.2 4.4E-06 49.6 10.4 79 318-447 161-239 (299)
409 PRK04690 murD UDP-N-acetylmura 95.0 0.38 8.2E-06 51.2 13.4 33 2-36 9-41 (468)
410 PF13241 NAD_binding_7: Putati 95.0 0.081 1.7E-06 43.9 6.6 33 2-36 8-40 (103)
411 PRK11199 tyrA bifunctional cho 95.0 0.27 6E-06 50.6 11.9 80 323-449 97-177 (374)
412 PRK14176 bifunctional 5,10-met 95.0 0.2 4.2E-06 49.4 10.2 79 318-447 158-236 (287)
413 PLN02897 tetrahydrofolate dehy 94.9 0.18 3.9E-06 50.8 10.0 89 307-447 198-286 (345)
414 PRK10792 bifunctional 5,10-met 94.9 0.2 4.3E-06 49.4 10.1 79 318-447 153-231 (285)
415 PLN02616 tetrahydrofolate dehy 94.9 0.19 4.1E-06 50.9 10.1 88 308-447 216-303 (364)
416 PRK05868 hypothetical protein; 94.9 0.027 5.8E-07 58.0 4.2 35 1-37 1-35 (372)
417 PRK14191 bifunctional 5,10-met 94.9 0.17 3.7E-06 49.9 9.5 79 318-447 151-229 (285)
418 PLN02688 pyrroline-5-carboxyla 94.8 0.19 4.2E-06 49.0 9.9 99 326-457 2-105 (266)
419 PRK14170 bifunctional 5,10-met 94.8 0.13 2.9E-06 50.5 8.6 71 2-127 158-229 (284)
420 PRK06392 homoserine dehydrogen 94.8 0.14 3E-06 51.7 9.0 21 2-22 1-21 (326)
421 PRK06728 aspartate-semialdehyd 94.8 0.082 1.8E-06 53.6 7.3 68 2-88 6-78 (347)
422 PLN00203 glutamyl-tRNA reducta 94.8 0.72 1.6E-05 49.6 14.7 110 310-447 251-369 (519)
423 PRK07688 thiamine/molybdopteri 94.8 0.11 2.3E-06 52.9 8.1 41 2-44 25-66 (339)
424 PF05368 NmrA: NmrA-like famil 94.8 0.069 1.5E-06 50.8 6.5 72 4-89 1-75 (233)
425 PRK14169 bifunctional 5,10-met 94.8 0.14 3E-06 50.4 8.5 70 2-126 157-227 (282)
426 PRK06753 hypothetical protein; 94.8 0.033 7.1E-07 57.1 4.5 34 2-37 1-34 (373)
427 COG4091 Predicted homoserine d 94.8 0.51 1.1E-05 47.3 12.3 87 2-89 18-112 (438)
428 PRK14181 bifunctional 5,10-met 94.7 0.26 5.6E-06 48.6 10.3 79 318-447 147-229 (287)
429 PRK14186 bifunctional 5,10-met 94.7 0.12 2.7E-06 51.1 8.2 71 2-127 159-230 (297)
430 COG1023 Gnd Predicted 6-phosph 94.7 0.31 6.7E-06 46.3 10.2 119 326-476 2-129 (300)
431 PRK14180 bifunctional 5,10-met 94.7 0.13 2.8E-06 50.5 8.2 70 2-126 159-229 (282)
432 PRK06598 aspartate-semialdehyd 94.7 0.19 4.1E-06 51.4 9.7 33 1-34 1-37 (369)
433 PRK00536 speE spermidine synth 94.7 0.64 1.4E-05 45.4 13.0 101 2-131 74-175 (262)
434 TIGR03649 ergot_EASG ergot alk 94.7 0.097 2.1E-06 51.4 7.5 35 3-39 1-36 (285)
435 PRK00094 gpsA NAD(P)H-dependen 94.7 0.12 2.6E-06 51.9 8.2 108 326-452 3-110 (325)
436 PLN02516 methylenetetrahydrofo 94.6 0.14 2.9E-06 50.8 8.2 71 2-127 168-239 (299)
437 PRK14166 bifunctional 5,10-met 94.6 0.15 3.2E-06 50.2 8.3 71 2-127 158-229 (282)
438 PRK14177 bifunctional 5,10-met 94.6 0.17 3.6E-06 49.8 8.6 72 2-128 160-232 (284)
439 PRK07502 cyclohexadienyl dehyd 94.6 0.16 3.4E-06 50.9 8.7 95 324-449 6-102 (307)
440 PRK14619 NAD(P)H-dependent gly 94.5 0.15 3.3E-06 51.0 8.4 85 323-453 3-88 (308)
441 TIGR03466 HpnA hopanoid-associ 94.5 0.033 7.2E-07 55.6 3.7 72 2-87 1-73 (328)
442 cd05311 NAD_bind_2_malic_enz N 94.5 0.28 6.1E-06 46.8 9.8 74 2-87 26-106 (226)
443 PRK14178 bifunctional 5,10-met 94.4 0.15 3.3E-06 50.0 7.9 53 2-89 153-206 (279)
444 PRK09414 glutamate dehydrogena 94.4 0.48 1E-05 49.8 12.0 124 2-160 233-369 (445)
445 cd00755 YgdL_like Family of ac 94.4 0.44 9.5E-06 45.7 10.9 41 2-44 12-53 (231)
446 PLN00141 Tic62-NAD(P)-related 94.4 0.096 2.1E-06 50.5 6.5 40 1-42 17-57 (251)
447 PRK14168 bifunctional 5,10-met 94.4 0.32 7E-06 48.2 10.1 79 318-447 155-237 (297)
448 PRK08655 prephenate dehydrogen 94.4 0.18 3.8E-06 53.2 8.9 91 326-449 2-94 (437)
449 PTZ00188 adrenodoxin reductase 94.4 0.091 2E-06 55.7 6.6 86 2-89 40-137 (506)
450 TIGR01724 hmd_rel H2-forming N 94.4 0.17 3.6E-06 50.5 8.0 86 346-451 32-120 (341)
451 PRK00045 hemA glutamyl-tRNA re 94.3 0.36 7.9E-06 50.6 11.2 114 321-465 179-300 (423)
452 PRK14187 bifunctional 5,10-met 94.3 0.18 3.8E-06 49.9 8.2 70 2-126 161-231 (294)
453 PLN02383 aspartate semialdehyd 94.3 0.12 2.6E-06 52.6 7.3 70 2-88 8-79 (344)
454 PRK12809 putative oxidoreducta 94.3 0.11 2.3E-06 57.7 7.4 34 2-37 311-344 (639)
455 PRK12779 putative bifunctional 94.3 0.062 1.4E-06 61.9 5.7 34 2-37 307-340 (944)
456 PF07991 IlvN: Acetohydroxy ac 94.3 0.15 3.3E-06 45.7 6.9 90 322-444 2-92 (165)
457 PRK14184 bifunctional 5,10-met 94.3 0.31 6.6E-06 48.1 9.7 78 319-447 152-233 (286)
458 PRK14172 bifunctional 5,10-met 94.3 0.21 4.7E-06 49.0 8.6 70 2-126 159-229 (278)
459 PRK14193 bifunctional 5,10-met 94.3 0.21 4.5E-06 49.2 8.5 70 2-126 159-231 (284)
460 PLN02662 cinnamyl-alcohol dehy 94.2 0.24 5.1E-06 49.4 9.2 35 2-38 5-40 (322)
461 PF01494 FAD_binding_3: FAD bi 94.2 0.046 1E-06 54.9 4.1 34 2-37 2-35 (356)
462 TIGR01035 hemA glutamyl-tRNA r 94.2 0.41 9E-06 50.1 11.2 114 321-465 177-297 (417)
463 PRK14185 bifunctional 5,10-met 94.2 0.38 8.2E-06 47.6 10.2 78 319-447 152-233 (293)
464 PLN02427 UDP-apiose/xylose syn 94.2 0.057 1.2E-06 55.7 4.7 41 2-43 15-56 (386)
465 PLN02897 tetrahydrofolate dehy 94.2 0.18 4E-06 50.7 8.0 71 2-127 215-286 (345)
466 PRK14618 NAD(P)H-dependent gly 94.1 0.34 7.3E-06 48.9 10.1 103 325-450 5-107 (328)
467 PRK14171 bifunctional 5,10-met 94.1 0.24 5.1E-06 48.9 8.5 70 2-126 160-230 (288)
468 cd00401 AdoHcyase S-adenosyl-L 94.1 0.88 1.9E-05 47.4 13.1 122 312-469 190-314 (413)
469 PRK15182 Vi polysaccharide bio 94.1 0.22 4.8E-06 52.2 8.8 109 323-451 5-124 (425)
470 PRK07066 3-hydroxybutyryl-CoA 94.1 0.2 4.4E-06 50.4 8.2 118 324-455 7-127 (321)
471 PRK14178 bifunctional 5,10-met 94.0 0.25 5.3E-06 48.6 8.5 79 318-447 146-224 (279)
472 PRK07588 hypothetical protein; 94.0 0.057 1.2E-06 55.8 4.3 34 2-37 1-34 (391)
473 PRK07538 hypothetical protein; 94.0 0.057 1.2E-06 56.3 4.3 34 2-37 1-34 (413)
474 PRK11728 hydroxyglutarate oxid 94.0 0.073 1.6E-06 55.1 5.1 35 2-36 3-37 (393)
475 PRK03815 murD UDP-N-acetylmura 94.0 0.27 5.8E-06 51.2 9.2 31 2-35 1-31 (401)
476 PRK14182 bifunctional 5,10-met 94.0 0.23 5.1E-06 48.8 8.2 70 2-126 158-228 (282)
477 PRK12769 putative oxidoreducta 94.0 0.2 4.4E-06 55.6 8.8 34 2-37 328-361 (654)
478 PRK00377 cbiT cobalt-precorrin 94.0 1.9 4.1E-05 40.1 14.1 115 3-145 43-162 (198)
479 PRK14167 bifunctional 5,10-met 93.9 0.46 1E-05 47.1 10.2 79 318-447 151-233 (297)
480 PRK06545 prephenate dehydrogen 93.9 0.28 6.2E-06 50.2 9.2 97 325-450 1-98 (359)
481 COG2227 UbiG 2-polyprenyl-3-me 93.9 0.39 8.4E-06 45.8 9.2 100 2-130 61-163 (243)
482 PF13450 NAD_binding_8: NAD(P) 93.9 0.1 2.2E-06 39.8 4.5 29 6-36 1-29 (68)
483 KOG0409 Predicted dehydrogenas 93.9 0.15 3.3E-06 50.0 6.6 70 323-424 34-103 (327)
484 COG0493 GltD NADPH-dependent g 93.9 0.1 2.3E-06 55.0 6.0 87 2-90 124-220 (457)
485 TIGR01318 gltD_gamma_fam gluta 93.9 0.21 4.6E-06 53.1 8.5 33 2-36 142-174 (467)
486 PTZ00245 ubiquitin activating 93.9 0.69 1.5E-05 44.6 10.8 114 2-135 27-149 (287)
487 PRK14192 bifunctional 5,10-met 93.9 0.36 7.9E-06 47.7 9.4 78 319-447 154-231 (283)
488 TIGR01296 asd_B aspartate-semi 93.9 0.11 2.3E-06 52.9 5.8 66 3-88 1-71 (339)
489 PRK08163 salicylate hydroxylas 93.8 0.066 1.4E-06 55.3 4.4 34 2-37 5-38 (396)
490 PF01266 DAO: FAD dependent ox 93.8 0.092 2E-06 52.7 5.3 31 3-35 1-31 (358)
491 TIGR03219 salicylate_mono sali 93.8 0.066 1.4E-06 55.8 4.3 34 2-37 1-35 (414)
492 PRK07531 bifunctional 3-hydrox 93.8 0.39 8.5E-06 51.5 10.2 114 324-455 4-124 (495)
493 PRK12771 putative glutamate sy 93.7 0.18 3.8E-06 55.0 7.7 33 2-36 138-170 (564)
494 PRK12491 pyrroline-5-carboxyla 93.7 0.39 8.5E-06 47.2 9.4 101 325-457 3-107 (272)
495 KOG2741 Dimeric dihydrodiol de 93.7 0.57 1.2E-05 46.9 10.4 74 2-91 7-85 (351)
496 TIGR00936 ahcY adenosylhomocys 93.7 0.56 1.2E-05 48.7 10.8 92 321-448 192-283 (406)
497 PRK12548 shikimate 5-dehydroge 93.7 0.5 1.1E-05 46.9 10.2 39 3-43 128-170 (289)
498 COG0665 DadA Glycine/D-amino a 93.7 0.083 1.8E-06 54.2 4.8 33 2-36 5-37 (387)
499 PRK07236 hypothetical protein; 93.7 0.075 1.6E-06 54.9 4.4 34 2-37 7-40 (386)
500 PRK12557 H(2)-dependent methyl 93.6 0.27 5.8E-06 50.0 8.3 85 346-450 32-119 (342)
No 1
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=100.00 E-value=9.9e-100 Score=790.62 Aligned_cols=473 Identities=89% Similarity=1.406 Sum_probs=434.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+||||+++|..|++++.|++|+++|+|+++++.|++|..+++|+++++++.+...+++++|+++.+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999987446889999999999999999999999999999987643456999999988899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||.+.++.+.+..+|++++++++++|+++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999986543222458999999999999999999999999999999999999988777654367899999999999
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
||++++++.+|++||+|+.++++.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++.+|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875444466889999999998744578889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 011654 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+++|+++++++||+|++|++||+||||||||||+++|.+.++++|+++.++++++++++|++||.++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999998876
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.++++||+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++..++..+.++..+++|++|.+++++++.....+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 78999999999999999999999999999999999999999999999887665566666899999998888887777778
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCc
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWH 473 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
++++++++++++||+||++|+|++|++++|+.+.+.|++|++|||+||+++++.+++.||+|+|+||+..+|-
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~ 473 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999887789999999999999999999999999999993
No 2
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-94 Score=708.03 Aligned_cols=412 Identities=42% Similarity=0.701 Sum_probs=384.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||.||+|+..|.+|++. ||+|+++|+++++++.|++|..|++||||++++.+ ...++++||+|++++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999998 99999999999999999999999999999999985 55678999999999999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||..++| +.|+++++++++.|.++++..++||+.|||||||++.+.+.+.+...+.+|.|+++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999998755 8999999999999999999889999999999999999988776655445899999999999
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC-CCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV-PEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
+|+|++++++|+|||+|.. ++++.+.+++||..+. ...++..++..+||++||+.|+|++++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 4567889999998752 2346888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 011654 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
.|+|.++|.+.++.|+|||.+|++||+||||+|||||+.+|+..|+++|++ ..+++++.++|+.|+.++++++.+.++
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999999999875
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++++|+||||+|||||||+|+||++.|++.|++.|++|.+|||.+.++.... +++
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~ 363 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD 363 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence 99999999999999999999999999999999999999999999998765321 236
Q ss_pred eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+.+++++++++++||++|+.|.|++|+++||+.+ .|+.| +|||+||+++++
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~ 414 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD 414 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence 7899999999999999999999999999999998 89988 899999999863
No 3
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.2e-94 Score=702.36 Aligned_cols=418 Identities=33% Similarity=0.463 Sum_probs=378.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||||||||+|+|..|+++ |++|+|+|+|+.+++.+|+|+.++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999997764 66788999999988 78999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHH-HHHhcCC---CCceeEeeCC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEK-ILTHNSR---EIKYQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P 156 (480)
+++||||||.+. ...||+++++++.+.|+++|++|++||++||++||||+++.. ++++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999876 458999999999999999999999999999999999999765 4554343 6799999999
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||..||+..+++.+.++|+ ||. ++++.+.+..||+.+.. ..+.++++.+|||+|+++|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kVI-gG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVI-GGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCcee-ecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999985 777 58999999999999986 47788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHH
Q 011654 237 CEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVS 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|.++++++++++|| .+.++||||+||||+|.||+||+|.|+++|.+ ++++++|+++|++||.|++.++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 58899999999999999999999999999998 899999999999999999999988
Q ss_pred Hh---cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654 317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS 393 (480)
Q Consensus 317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.| ++.+++++|+|+|||||+|++|+||||+++|++.|.++|++|.+|||++..... +..+
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~-~~~~---------------- 374 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPT-REDG---------------- 374 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchh-hhhc----------------
Confidence 55 678899999999999999999999999999999999999999999999986431 1110
Q ss_pred CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011654 394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..++ ..+.+++++++|+|||+|+|++|+.+||+.+.+. . ++|||+||++++.... +.+||+
T Consensus 375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~-~vivDtrnV~~~~~~~-----~~~i~~ 435 (436)
T COG0677 375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--A-KVIVDTRNVWKREREA-----AKGIGR 435 (436)
T ss_pred ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--C-cEEEECccccchhhhh-----hhcccC
Confidence 1112 3688999999999999999999999999998765 3 4999999999987654 666665
No 4
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-93 Score=671.21 Aligned_cols=480 Identities=83% Similarity=1.305 Sum_probs=461.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+-||+||+|.|..+.++.++|..+|+++|++..++.+||+...|+||||+++.+.+....++.|++|.+.++.++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999899999999999999999999999999999999999888889999999999999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||++|.||...-|.|++..+|+++++++.+.|+++....+||+..||+|..+.+.+..+|.....|..|.++++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999998888888999999999999999999999999999999999999999999997665578999999999999
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+|.+++++++|+||+|||.++.....+.+.+..+|++..+...+++++.+++|+.||+.|+|++..|+.+|.|..+||+.
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999998766778888999999999887789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 011654 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+.+|..+.++|+|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|+++..+|+||..+.++++..+|+.
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC-CCc
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA-SKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 399 (480)
.+.++||+|||++||.+|+|+|+||++.+.+.|++.++...+|||.+.++++.+++..-.++||||.|++++++.. ...
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~ 400 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ 400 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence 9999999999999999999999999999999999999999999999999999999998889999999999999995 488
Q ss_pred eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCccccccC
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+++..++|+|.++|+++||+|+|+||++||+++|.+.|.+|+.|||+||++|.+++++.||+.+.||.+..+|+++.-++
T Consensus 401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~ 480 (481)
T KOG2666|consen 401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV 480 (481)
T ss_pred eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred C
Q 011654 480 A 480 (480)
Q Consensus 480 ~ 480 (480)
+
T Consensus 481 g 481 (481)
T KOG2666|consen 481 G 481 (481)
T ss_pred C
Confidence 3
No 5
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=100.00 E-value=6.1e-82 Score=652.57 Aligned_cols=406 Identities=25% Similarity=0.328 Sum_probs=358.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||++||.+|++ ||+|++||+++++++.+++|..|+.|++++++... +++.++++.+ ++++||+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~adv 79 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECNF 79 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCCE
Confidence 899999999999999999886 69999999999999999999999999999999653 6788888876 5899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcCC---CCceeEeeCCc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNSR---EIKYQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+ +.+|.++|+||
T Consensus 80 vii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 80 YIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred EEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 9999999986643 7999999999999999999999999999999999997 4566665322 46799999999
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|+.+|.+..++.+++++|+|+. +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+++||++.+|
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la 229 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF 229 (425)
T ss_pred cCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 77889999999998633467889999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654 238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS 317 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|++++++++++ ..+.||+ |||||||||+++|.+.++++|++ ++++++++++|+.||+++++++++.
T Consensus 230 e~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~~ 304 (425)
T PRK15182 230 NRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIKA 304 (425)
T ss_pred HHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753 2346666 99999999999999999999998 7899999999999999999999988
Q ss_pred h---cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654 318 M---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP 394 (480)
Q Consensus 318 l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
+ ++++++++|+|||+|||+||+|+||||+++|++.|+++|++|.+|||++..+...+.++
T Consensus 305 l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~----------------- 367 (425)
T PRK15182 305 MIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG----------------- 367 (425)
T ss_pred HHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC-----------------
Confidence 7 35688999999999999999999999999999999999999999999987654433221
Q ss_pred CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654 395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE 453 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+... .+.++++||+|||+|+|++|+++||+++.+.|+.+++|||+||+++.+
T Consensus 368 -----~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 368 -----IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred -----cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 1100 123578999999999999999999999999887655999999999854
No 6
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=2.4e-79 Score=635.68 Aligned_cols=406 Identities=39% Similarity=0.614 Sum_probs=371.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++|..|++|+++++++.+ ...+++++++++.+++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999998 99999999999999999999999999999998864 23466899999998899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHH-HHHHhcC--C-CCceeEeeCC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIE-KILTHNS--R-EIKYQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (480)
+||+|||||.+.++ .+|++++.++++++.++++++++|+++||++|||++++. +++++.. . +.+|.++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999986543 899999999999999999999999999999999999885 5555532 1 4678999999
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
|++.+|.+..++.+|+++++|++ +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998854 8899999999999862246788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHH
Q 011654 237 CEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVS 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++|+++.+++.||+||||+|++||++++++.|++.|++ .+++++++++|++||.++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.| +.+++++|+|||+|||+||+|+|+||++.|++.|+++|++|.+|||++..+.... +
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~-------------------- 364 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L-------------------- 364 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c--------------------
Confidence 88 5789999999999999999999999999999999999999999999998764321 1
Q ss_pred CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654 397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN 448 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
..++++++++++||+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 365 ----~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 365 ----PLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred ----ccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 1246889999999999999999999999999999999887 9999997
No 7
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-78 Score=621.63 Aligned_cols=394 Identities=27% Similarity=0.412 Sum_probs=348.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||++||.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 58999999999999999999998 99999999999999999999999999999999764 345778887753 579
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC----------CCc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR----------EIK 149 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----------g~~ 149 (480)
|+||+|||||.+.++ .+|++++.++++++.++++++++||++||++|||++++...+.+.+. +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999986643 89999999999999999999999999999999999999876665321 357
Q ss_pred eeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHH
Q 011654 150 YQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
|.++++|||+.+|.+..++.++++++ ||. ++++.++++++|+.+.+ ..++++++++||++|+++|+|+++++++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999875 775 38899999999999974 4567789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHH
Q 011654 230 VNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNR 309 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (480)
+||++.+|+++|+|+++|+++++++||+ ++++||+||||||||||+++|.+ +.+.. ++++++++++|++||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHH---hcCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 68999999999999999999965 34444 68999999999999999
Q ss_pred HHHHHHHHh-------cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHHHHhhhcccc
Q 011654 310 FVNRIVSSM-------FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQIQRDLSMKKF 381 (480)
Q Consensus 310 ~~~~~~~~l-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+++++++.+ ++.+++++|+|||+|||+||+|+||||+++|++.|+++| ++|.+|||++.......
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~------- 371 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKL------- 371 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhc-------
Confidence 999999876 456789999999999999999999999999999999996 99999999986532110
Q ss_pred CCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654 382 DWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG 446 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
...+. ..++++++++||+||++|+|++|+++||+++ +.| +|||+
T Consensus 372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~ 415 (415)
T PRK11064 372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT 415 (415)
T ss_pred ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence 01122 3789999999999999999999999999875 345 89995
No 8
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-78 Score=616.13 Aligned_cols=374 Identities=25% Similarity=0.371 Sum_probs=331.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||+++|..|+ . ||+|++||+++++++.++++..+++|+++++++.+. .++++++++..+++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998887 4 899999999999999999999999999999987642 3567778888888899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||||.+.+ ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+ +.++++|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999997541 247899999999999988 688999999999999999999877654 357899999999
Q ss_pred cccccccCCCCeEEEEeCCCcchHHHHHHHHHHH-hccCCCC-eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVY-AHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|++++++++|++||+|+. ++..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++.+|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 34566666666 4443222 2357999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 011654 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+ .+++ ++++++++++|+.||.++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999998766 4455 6899999999999999999999873
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++++|+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++.+... .+
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~-------------------------~~ 346 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF-------------------------FN 346 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh-------------------------cC
Confidence 67899999999999999999999999999999999999999999865431 14
Q ss_pred eeeecCHHHhcccccEEEEEeccccccccc
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLD 429 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~ 429 (480)
+.+++++++++++||++++.|.|+||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK15057 347 SRLERDLATFKQQADVIISNRMAEELKDVA 376 (388)
T ss_pred CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence 788999999999999999999999998744
No 9
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=100.00 E-value=1.8e-37 Score=286.42 Aligned_cols=182 Identities=41% Similarity=0.628 Sum_probs=149.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+++|..||++ ||+|+++|+|+++++.|++|..|++||++++++.+ ...++++++++.++++.++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 99999999999999999999999999999999986 44789999999999999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcCC-CCceeEeeCCcc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNSR-EIKYQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~ 158 (480)
++|||||||.+.++ ++|++++++++++|+++++++++||++||++|||+++ +.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998744 8999999999999999999999999999999999995 6788887764 478999999999
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDV 194 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l 194 (480)
+.||++++++.+|++|++|+. ++.+.+.+++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence 999999999999999998876 35555566664
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=7e-32 Score=261.50 Aligned_cols=249 Identities=21% Similarity=0.222 Sum_probs=209.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.|||.+|.++ ||+|++||+++++ .+.+... +.+...++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999998 5555441 2456678888899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||.+ ..+++++ +.+.+.+++++++|++||++|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999864 3456666 57889999999999999999999999999998875 35678998
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..++..+....+ .||+||+ ++.+++++++|+.+++ ..+++++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888766665554 5899996 8999999999999974 466778889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654 238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++.+.++++..+.-+| +++ ++.|||....+.||+.+..+.+++.|++ .++...+.
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~ 262 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAA 262 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 9999999999999987642111 122 3667799999999999999999999998 55555443
No 11
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.7e-30 Score=298.42 Aligned_cols=382 Identities=10% Similarity=0.034 Sum_probs=285.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||||||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999998 99999999999999988752 23566789998999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ +++.+.+++++++|++||+.|.+++++.+.+.+.+. .+.++.+|..
T Consensus 64 Vi~~l~~~--------------~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHP--------------DQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS 127 (1378)
T ss_pred EEEEcCCh--------------HHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence 99999865 2345665 578888889999999999999999999988887641 2456788988
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
.++..+....+ .+++||+ ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655544433 4788986 7899999999999974 33444 7899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHH-----H
Q 011654 238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKV-----N 303 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N 303 (480)
++.|+|++.++++++..+.-++ .++ .+.+||....+.||+.+.+++|++.|++ .++...+.+. +
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS 276 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence 9999999999999987642111 122 3456788899999999999999999998 5555544431 1
Q ss_pred H-----HhHHHHHHHHHHHhc-----------------------CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011654 304 D-----YQKNRFVNRIVSSMF-----------------------NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355 (480)
Q Consensus 304 ~-----~~~~~~~~~~~~~l~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~ 355 (480)
. ... .+++.+.+..+ ++-..++|+++|+.. ....+++.|.+
T Consensus 277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~ 345 (1378)
T PLN02858 277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK 345 (1378)
T ss_pred cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence 1 111 12222211100 011237899999976 88999999999
Q ss_pred CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccc-cccc--cHHH
Q 011654 356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDE-FKTL--DYQK 432 (480)
Q Consensus 356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~--~~~~ 432 (480)
.|++|.+||+.....+.... .+....+++.++++++|+|++++..++ .+++ ....
T Consensus 346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 99999999986543322221 122346788999999999999999755 2322 1233
Q ss_pred HHHhcCCCCEEEEcCCCCChHH------Hhh--cCcEEEE
Q 011654 433 IFDNMRKPAYIFDGRNILDVEK------LRE--IGFIVYS 464 (480)
Q Consensus 433 ~~~~~~~~~~i~D~~~~~~~~~------~~~--~g~~y~~ 464 (480)
+...+++..+|||+..+-+... +++ .|+.|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4556666679999988775321 233 5777754
No 12
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.97 E-value=1.1e-28 Score=245.28 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=199.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999887753 2334567888889999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++. .++.++ +.+.+.+++++++|++||++|.+++++.+.+.+.+ +.++.+|.
T Consensus 60 vVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV 121 (296)
T PRK15461 60 FVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPV 121 (296)
T ss_pred EEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccC
Confidence 9999998642 234443 45677788999999999999999999988887764 34568887
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..... .+++||+ ++.+++++++|+.+++ ..++.++++.|..+|+++|.+...++++++|...+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (296)
T PRK15461 122 GRTSDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC 192 (296)
T ss_pred CCCHHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544433322 4678886 7899999999999974 466778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------C-ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654 238 EATGADVTQVSHAIGKDTRIG-------P-RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~-------~-~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++.++++++..+.-+ . .++ .+.++|....+.||+.+..+++++.|++ .++.+.+.
T Consensus 193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~ 263 (296)
T PRK15461 193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASR 263 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999999997543100 1 121 2345688889999999999999999998 55554433
No 13
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=3.3e-28 Score=242.34 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=201.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|..|++. |++|++||+++++.+.+.+. +...++++++++++||
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 57999999999999999999998 99999999999988877642 2345677888889999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+++++.+.+++.+ +.++++|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence 9999998642 234444 45777888999999999999999999988887653 34678998
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+..+..+.. .+++|++ +++++.++++++.++. ..+++++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544322 4778875 7889999999999863 456677889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCC-------CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654 238 EATGADVTQVSHAIGKDTRI-------GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++++++...... ..+++ ...+||...++.||+.++.+++++.|++ .++++.+.+
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 264 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVME 264 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999999754310 01111 2346789999999999999999999998 566555443
No 14
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.96 E-value=2.9e-28 Score=242.11 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=196.9
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||+|||+|.||.+||..|+++ |++|++||+++++++.+.+. +...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA-------------------GAVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCcccCCHHHHHhcCCEE
Confidence 699999999999999999998 99999999999998887652 122345677888999999
Q ss_pred EEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||++. .++.++ +.+.+.++++++|++.||+.|.+++++.+.+++.+ +.++.+|.+.
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g----~~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG----IDYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEecCCCC
Confidence 99998642 233443 44667788899999999999999999988887653 3456789877
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+..+..... .+++|++ ++++++++++++.++. ..++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543322 4778875 7899999999999873 45566677999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654 240 TGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|+|++++.++++.....+ .++. ...+||+..|+.||+.++.+++++.|++ .++++++.
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~ 260 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ 260 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 9999999999998543111 1111 2236799999999999999999999998 56665443
No 15
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=231.41 Aligned_cols=241 Identities=17% Similarity=0.224 Sum_probs=198.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++||+||+|.||.+|+.+|.++ ||.|++|||+.++++.+.+. +.++.++|.|+++.||+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 5899999999999999999999 99999999999999988763 34567889999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
||+|||+|.+. ++++ ..+.+.++++... |++||++|.++++|.+.++... ...+.+|.
T Consensus 95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV 156 (327)
T KOG0409|consen 95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV 156 (327)
T ss_pred EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence 99999987543 3444 3455556677666 8999999999999998887653 35678998
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+...+....+ .|++||+ ++.++++.++|+.+++ ..++.+..+.+..+|+++|...+.++..+.|...++
T Consensus 157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la 227 (327)
T KOG0409|consen 157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA 227 (327)
T ss_pred cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877555555544 5788875 8999999999999974 456778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCcccc---------CCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654 238 EATGADVTQVSHAIGKDTRIGPRFLN---------SSVGFGGSCFQKDILNLVYICECNGLT 290 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~---------pg~g~gg~cl~kD~~~l~~~a~~~g~~ 290 (480)
+++|+|...++++++++.--++.+.. +.|||+-..+.||+......+.+.+.+
T Consensus 228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999985311222223 335678889999999999999998877
No 16
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=1.1e-27 Score=237.39 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=194.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. +...+.++.+++++||+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999998 999999999875 3444321 23445678888899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHH---HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++. ++.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|..
T Consensus 59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G----~~~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG----GDYLDAPVS 120 (292)
T ss_pred EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEEecCC
Confidence 99999864 23455542 3566678899999999999999999998888764 235678876
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..... .+++||+ ++.+++++++|+.+++ ..+++++.+.|..+|+++|.+.+.++..++|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544433221 4678886 7899999999999974 4677888999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHH
Q 011654 239 ATGADVTQVSHAIGKDTRI-------GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV 299 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+.|+|+++++++++..+.- ..+++ ...++|....+.||+.+.++++++.|++ .++.+.+
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~ 259 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATC 259 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHH
Confidence 9999999999999765311 11122 2346788999999999999999999998 5555443
No 17
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.96 E-value=1.3e-27 Score=237.04 Aligned_cols=245 Identities=16% Similarity=0.126 Sum_probs=198.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEe
Q 011654 6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVS 85 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (480)
|||+|.||.+||..|+++ ||+|++||+++++++.+.+. +...++++.++++++|+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999998 99999999999999888752 234567888889999999999
Q ss_pred ccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccccc
Q 011654 86 VNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEG 162 (480)
Q Consensus 86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
||++. .+++++ +++.+.++++++||++||+.|++++++.+.+++.+ ..++++|...++.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g----~~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG----AVFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEECCCCCCHH
Confidence 99642 245555 67888888999999999999999999998887754 3457899887765
Q ss_pred ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCC
Q 011654 163 TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+..... .+++||+ ++.+++++++|+.+++ ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5544332 4678886 7789999999999863 45667778999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCC---------c-----cc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654 243 DVTQVSHAIGKDTRIGP---------R-----FL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 243 d~~~v~~~~~~~~~~~~---------~-----~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|+++++++++..+.-++ . .. .+.++|.-..+.||+.+..++|++.|++ .++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 264 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR 264 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999986531111 0 01 2345677778899999999999999998 56555443
No 18
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.94 E-value=7.4e-25 Score=218.31 Aligned_cols=267 Identities=15% Similarity=0.121 Sum_probs=204.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++.+.+.+. +.+.+.++++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999998887642 24456778876665
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..++++++++.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999864 235777788888888999999999999999999888887654 345788887
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC--CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE--DRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+-.+.... .+++||+ ++++++++++++.++.. ..++.++++.|..+|+++|.+...++..+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655444332 4788986 78999999999998631 35677889999999999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHhcCCCCCCC--------ccccCCCCCcccchhhhH---HHHHHHHHHcCCchhhhHHHHHH---
Q 011654 237 CEATG--ADVTQVSHAIGKDTRIGP--------RFLNSSVGFGGSCFQKDI---LNLVYICECNGLTEVANYWKQVI--- 300 (480)
Q Consensus 237 ~~~~G--id~~~v~~~~~~~~~~~~--------~~~~pg~g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++.| +|+.+++++++.+....+ .+..-...+.-..+.||. .+.++.|++.|++ .+++..+.
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~~~~ 270 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASLFMR 270 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 99999 999999999985431111 111100112346778897 6888999999998 66666654
Q ss_pred --HHHHHhH-HHHHHHHHHHh
Q 011654 301 --KVNDYQK-NRFVNRIVSSM 318 (480)
Q Consensus 301 --~~N~~~~-~~~~~~~~~~l 318 (480)
..|+.-+ ...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~a~~~~f 291 (299)
T PRK12490 271 FASQEDDSFHMKVVSALRNQF 291 (299)
T ss_pred HHhCccCChHHHHHHHHHHhh
Confidence 3344434 44444444443
No 19
>PLN02858 fructose-bisphosphate aldolase
Probab=99.94 E-value=4.7e-25 Score=255.16 Aligned_cols=252 Identities=13% Similarity=0.110 Sum_probs=201.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|+|||+|+||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA-------------------GGLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887642 1234577888899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||+|. .+++++ .++.+.++++++||++||+.|++++++.+.+++.+ ..+.++.+|.
T Consensus 383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 9999999763 234444 45777788999999999999999999988887732 2356788998
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..++..+..... .+|+||+ ++.+++++++|+.++. ..++. ++++.|+.+|+++|.+.+.+++.++|+..+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777655544322 4788986 7899999999999874 33443 579999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654 237 CEATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++.|+|+++++++++..+.-+ .+++ ...++|....+.||+.+..+.+++.|++ .++...+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~ 588 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH 588 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 9999999999999887553211 1122 2346788899999999999999999998 45544443
No 20
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.94 E-value=1.1e-24 Score=227.65 Aligned_cols=252 Identities=12% Similarity=0.069 Sum_probs=200.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc--
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-- 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
+++|||||||.||.+||.+|+++ ||+|++|||++++++.+.+.... .|. ..+..+.+++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence 46899999999999999999998 99999999999999988752000 000 113356778887765
Q ss_pred -CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||.+ ..++++++++.+.+.+|++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 356788888999999999999999999999999888887764 45678888
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC-----CeEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE-----DRIITTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ +.+|+||+ ++++++++++|+.++.+ ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G----~~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG----PSLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC----CeEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776555433 26899996 88999999999998631 2567788999999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------ccc----cCCCCCcccchhhhHH------HHHHHHHHcCCchh
Q 011654 233 MSALCEA-TGADVTQVSHA---IGKDTRIGP------RFL----NSSVGFGGSCFQKDIL------NLVYICECNGLTEV 292 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~---~~~~~~~~~------~~~----~pg~g~gg~cl~kD~~------~l~~~a~~~g~~~~ 292 (480)
...++++ .|+|++++.++ ++.++--++ ..+ ..+++|-...+.||.. .....|.+.|++
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999999988 444431111 111 1355688889999999 889999999998
Q ss_pred hhH
Q 011654 293 ANY 295 (480)
Q Consensus 293 ~~~ 295 (480)
.++
T Consensus 283 ~p~ 285 (493)
T PLN02350 283 APT 285 (493)
T ss_pred ccH
Confidence 565
No 21
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=99.94 E-value=1.2e-26 Score=195.25 Aligned_cols=106 Identities=44% Similarity=0.664 Sum_probs=88.0
Q ss_pred EEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHH
Q 011654 328 AILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAY 407 (480)
Q Consensus 328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (480)
+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.+....... ..+++++++++
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE 61 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence 69999999999999999999999999999999999999999887654210 12467888999
Q ss_pred HhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654 408 QAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV 452 (480)
Q Consensus 408 ~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
++++++||||++|+|++|++++|+.+...|+++++|||+||+++|
T Consensus 62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 999999999999999999999999999999777799999999986
No 22
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=99.93 E-value=7.3e-26 Score=185.40 Aligned_cols=96 Identities=42% Similarity=0.686 Sum_probs=88.1
Q ss_pred hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcC
Q 011654 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNG 288 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g 288 (480)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|++++++|||++..++.||+||||+|||||+.+|.+.++++|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHh
Q 011654 289 LTEVANYWKQVIKVNDYQ 306 (480)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (480)
.+ ..++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 98 67999999999986
No 23
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.92 E-value=4.4e-23 Score=205.78 Aligned_cols=267 Identities=15% Similarity=0.146 Sum_probs=200.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. +.+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 7999999999999999999998 99999999999999887642 24556777776664
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++. .++++++.+.+.+++++++|+.||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence 699999998641 34677788888899999999999999999888888887764 345688887
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC---CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE---DRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.++..+.... .+++||+ ++.+++++++|+.+... ..++.++++++..+|+++|++....+..+.|...
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERGY----CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655444331 5788986 78999999999998631 3567788999999999999999999999999999
Q ss_pred HHHH--hCCCHHHHHHHhcCCCCCCCcc-------ccCCCCCc-ccchhhh---HHHHHHHHHHcCCchhhhHHHHHHH-
Q 011654 236 LCEA--TGADVTQVSHAIGKDTRIGPRF-------LNSSVGFG-GSCFQKD---ILNLVYICECNGLTEVANYWKQVIK- 301 (480)
Q Consensus 236 l~~~--~Gid~~~v~~~~~~~~~~~~~~-------~~pg~g~g-g~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~~~- 301 (480)
++++ .|+|+.++.++++....+++.+ +.-.+.+. -.-+.|| .+..+..|.+.|++ .+.+.++..
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~ 270 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM 270 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999 9999999999998653211111 11112221 1123455 47788889999998 566555321
Q ss_pred -----HHHHhHHHHHHHHHHHh
Q 011654 302 -----VNDYQKNRFVNRIVSSM 318 (480)
Q Consensus 302 -----~N~~~~~~~~~~~~~~l 318 (480)
.+...+...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHhccCCCcHHHHHHHHHHhc
Confidence 12234555555555554
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.92 E-value=2.1e-23 Score=210.38 Aligned_cols=281 Identities=19% Similarity=0.219 Sum_probs=198.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+++.. ...+.++.. ...+++++++++++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 79999999999999999999998 999999999999999888642 222222211 113467788888878899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCC-CceeEeeCCc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSRE-IKYQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (480)
|+||+|||++ .+.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 35778889999888899888776 88888777777777665321 1345667787
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHH-----------------HhhhHHh
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAE-----------------LSKLAAN 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae-----------------~~Kl~~N 220 (480)
...+..+ ..+..+++++. +.+..+++.++|+.... ...+..+....+ ..|+.+|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6544322 12223445554 47889999999997642 233444554444 4789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CccccCCCCCcc--------------cchhhhHHHH
Q 011654 221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGKDT----RIG--PRFLNSSVGFGG--------------SCFQKDILNL 280 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~----~~~--~~~~~pg~g~gg--------------~cl~kD~~~l 280 (480)
...++....++|+..+|+++|+|++.+.+.++... ..+ .+...||.-++. .-..||+.++
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 99999999999999999999999999988755330 001 111112211211 2346999999
Q ss_pred HHHHHHcCCchhhhHHHHHHH--HHHHhHHHHHHHHH
Q 011654 281 VYICECNGLTEVANYWKQVIK--VNDYQKNRFVNRIV 315 (480)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~ 315 (480)
.++++++|++ .++.+++.+ .|+..|+.+++++.
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM 323 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 9999999998 677776665 36666776666654
No 25
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.90 E-value=1.4e-21 Score=194.60 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=194.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH---Hhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK---HVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+.. .....++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence 7999999999999999999998 999999999999999887531 111234433 3456
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||+. .++++++++.+.++++++||+.||..|.++.++.+.+++.+ +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence 89999999853 35788899999999999999999998888888777776653 345677766
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC--CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE--DRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
.++..+... ..+++||+ ++.++.++++|+.+... ..++.++.+.+..+|+++|.+...++..+.|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333 25788986 88999999999998742 35677889999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCCccc---------cCCC-CCccc-chhhhHHHHHHHHHHcCCchhhhHHHHHHH--
Q 011654 237 CEAT--GADVTQVSHAIGKDTRIGPRFL---------NSSV-GFGGS-CFQKDILNLVYICECNGLTEVANYWKQVIK-- 301 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~~~~~---------~pg~-g~gg~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~-- 301 (480)
+++. |+|.+++.++++.+.-+.+.++ .|.. .|-.. --.+|.+..+..|.+.|++ .+.+.++..
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~ 269 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR 269 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 9998 5799999999987642222111 1110 01111 1234556677778888888 565554442
Q ss_pred ---HHH-HhHHHHHHHHHHHh
Q 011654 302 ---VND-YQKNRFVNRIVSSM 318 (480)
Q Consensus 302 ---~N~-~~~~~~~~~~~~~l 318 (480)
.+. ..|..+++.....+
T Consensus 270 ~~~~~~~~~~~~~~~~~r~~f 290 (298)
T TIGR00872 270 FASRDLDDFANKVLAALRKEF 290 (298)
T ss_pred HHhCCCCCcHHHHHHHHHHhh
Confidence 122 44566666555544
No 26
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.89 E-value=1.2e-21 Score=204.78 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=172.1
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc---
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--- 77 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|++|+|||+|.||.+||.+|+++ ||+|++||+++++++.+++.... ++ ..+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999988752100 00 12456778888775
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||.+ ..++++++++.+++.++++||+.||..+..+.+..+.+.+.+ +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence 589999998753 357888899999999999999999998877777767676654 45678888
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC-----CeEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE-----DRIITTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ +.+|+||+ ++++++++++|+.+... ..+++++.+++..+|+++|.+.+..+..+.|
T Consensus 128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 7776555432 36899996 88999999999998742 1467788899999999999999999999999
Q ss_pred HHHHHH-HhCCCHHHHHHHhc
Q 011654 233 MSALCE-ATGADVTQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~-~~Gid~~~v~~~~~ 252 (480)
...+++ +.|+|.+++.+++.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 69999999988873
No 27
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.88 E-value=5.2e-21 Score=187.36 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=181.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||.|.||+++|..|+++ ||+|.+|.++++.++.+++. .++-|.|+.. ...++.+++|++++++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 4666666653 346789999999999999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+|+++||+ ..++++++++..+++++.+++..|. +.++|.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 999999986 3578999999888889998888875 688888899999888754334788999999
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-----------------hhHHh
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELS-----------------KLAAN 220 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~-----------------Kl~~N 220 (480)
+.+-.. ..|+.+++++. +++..++++.+|+.- ..+++. .|+...|+. ++.+|
T Consensus 138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~--~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSP--YFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCC--cEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 876432 34667888887 688999999999973 245555 576655543 56688
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654 221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGK 253 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+..++....++||.++...+|.+++++....+.
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 899999999999999999999999988877764
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.86 E-value=5.7e-21 Score=173.49 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=122.1
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. +.+.+++++++++.+|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 79999999999999999999998 99999999999999988753 4778899999999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHH--HHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM--IANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||.+ ..+++++.+ +.+.+++++++|++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 457888888 999999999999999999999999999888764 566788876
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
.++..+..... .+++||+ ++++++++++|+.++.
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK 155 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence 66544433322 4788986 8899999999999863
No 29
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.85 E-value=4.7e-20 Score=192.87 Aligned_cols=206 Identities=12% Similarity=0.137 Sum_probs=165.6
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---ccC
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---AEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---~~a 79 (480)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... ...+..++++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~--------------g~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK--------------GKKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC--------------CCCceecCCHHHHHhhcCCC
Confidence 489999999999999999998 99999999999999988752100 01234455666644 468
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ ..+.++++++.++++++++||+.||+.+..+.+..+.+.+.+ +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence 9999999853 346778889999999999999999987777766666666553 4567888877
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC-----eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED-----RIITTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-----~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
++..+..+ +.+|+||+ ++++++++++|+.+.... .+++++.+++..+|+++|.+....+..+.|..
T Consensus 127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555433 25788986 889999999999987421 25778889999999999999999999999999
Q ss_pred HHHH-HhCCCHHHHHHHh
Q 011654 235 ALCE-ATGADVTQVSHAI 251 (480)
Q Consensus 235 ~l~~-~~Gid~~~v~~~~ 251 (480)
.+++ +.|+|.+++.+++
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 7999999999988
No 30
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=1.3e-19 Score=183.05 Aligned_cols=276 Identities=16% Similarity=0.113 Sum_probs=188.9
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|.||.++|..|+++ ||+|++|++++++.+.+++.. ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999998 999999999999998888532 222222210 012366778888888999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cccch--HHHHHHHHHhcCCCCceeEeeCC
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKT--AEAIEKILTHNSREIKYQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
|+||+|||+. .++++ .+.++++.+++..++ +.+.+ .+.+.+.+++.. ...+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~-~~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLT-QARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhc-CCCeEEEECc
Confidence 9999999853 12333 355667788887777 56654 566777775511 0123456677
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CC-----------------hhHHHHhhhH
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TN-----------------LWSAELSKLA 218 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~-----------------~~~ae~~Kl~ 218 (480)
....+...-.... .++.|+ +++..++++++|+..+ .+++. .| .+.+...|+.
T Consensus 136 ~~a~~~~~~~~~~---~~~~~~-----~~~~~~~v~~ll~~~~--~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIARFLPAA---TVVASP-----EPGLARRVQAAFSGPS--FRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHcCCCeE---EEEEeC-----CHHHHHHHHHHhCCCc--EEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 6655432211111 244454 3788999999999864 34432 22 3556677899
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCcc------cc------CCCCCcccchhhhHHH
Q 011654 219 ANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKD-------TRIGPRF------LN------SSVGFGGSCFQKDILN 279 (480)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-------~~~~~~~------~~------pg~g~gg~cl~kD~~~ 279 (480)
+|...++..+.++|+..+++++|+|+++++++++.. ++.+.++ .. ..++|.-.-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 999999999999999999999999999999988741 1111111 11 1123445567799999
Q ss_pred HHHHHHHcCCchhhhHHHHHHHH--HHHhHHHHHHHHHH
Q 011654 280 LVYICECNGLTEVANYWKQVIKV--NDYQKNRFVNRIVS 316 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~ 316 (480)
+..+++++|++ .++++.+.++ |+.-|...++.+++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLMG 322 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 99999999998 6777766653 44456766666543
No 31
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=9e-18 Score=168.13 Aligned_cols=247 Identities=16% Similarity=0.074 Sum_probs=163.5
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
||+|+|||+|.||.+||..|+++ |++|++||++++.++..++.. ..+.+.....+ .+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence 68999999999999999999998 999999999998877644210 00000011111 13578899
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY 150 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
++++++++||+|++|+|... ......++.+.+..+++. ++.+||.+ -....+++.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~-ii~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHA-ILASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcc-eEEEeCCC-CCHHHHHHhcCCc----cc
Confidence 99988899999999998642 223455666766666555 44555543 3445565555332 23
Q ss_pred eEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++..+|-. +.... +-..++++.. +++++++.++++++.+++ .++++.....+. +.|. +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~--t~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPW--TAPATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence 56667752 22111 1123565432 268899999999999863 345554333332 3443 356899
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCCC-----CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654 231 NAMSALCEATGADVTQVSHAIGKDTRI-----GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLT 290 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~~~~-----~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~ 290 (480)
+|+..++++.|+|++++.+++...... |+..+ ..++|+-...+.||..+..+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 999999999999999999999765322 21111 2335566678889999999888888876
No 32
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.80 E-value=3.9e-18 Score=177.76 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---CcEEEEeccC
Q 011654 12 VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---ADIVFVSVNT 88 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt 88 (480)
||.+||.+|+++ ||+|++||+++++++.+.+.... ..+++.+.+++++++. +|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 0246777889987764 8999999986
Q ss_pred CCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccccccccccc
Q 011654 89 PTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDL 168 (480)
Q Consensus 89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~ 168 (480)
+ ..+.++++++.+.+.+|++||+.||+.+..+++..+.+++.+ +.++.+|...++..+..+
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence 5 356788899999999999999999998888888877787764 456788888776555433
Q ss_pred CCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCe-------EEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH-Hh
Q 011654 169 FNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDR-------IITTNLWSAELSKLAANAFLAQRISSVNAMSALCE-AT 240 (480)
Q Consensus 169 ~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~ 240 (480)
+.+|+||+ ++++++++++|+.+.. .. .++++.+++..+|+++|.+....+..+.|...+++ ++
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~ 196 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL 196 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899996 8899999999999874 22 67788899999999999999999999999999999 58
Q ss_pred CCCHHHHHHHh
Q 011654 241 GADVTQVSHAI 251 (480)
Q Consensus 241 Gid~~~v~~~~ 251 (480)
|+|.+++.+++
T Consensus 197 Gl~~~~l~~v~ 207 (459)
T PRK09287 197 GLSAEEIADVF 207 (459)
T ss_pred CCCHHHHHHHH
Confidence 99999999888
No 33
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=4.6e-18 Score=170.21 Aligned_cols=250 Identities=16% Similarity=0.176 Sum_probs=170.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999998 999999998632 245667889999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
||+|+|+. .++++++.+.++ ++++++|+.+|+ ++|.+.+.+.+.+........+.++.+|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 356777888764 677888888776 7777766666666543222233344666543
Q ss_pred cccccccccCCCC-eEEEEeCCCcchHHHHHHHHHHHhccCCCCeEE-eCChhH-----------------HHHhhhHHh
Q 011654 160 AEGTAIQDLFNPD-RVLIGGRETPEGQKAIQALKDVYAHWVPEDRII-TTNLWS-----------------AELSKLAAN 220 (480)
Q Consensus 160 ~~G~a~~~~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~~~~~~-----------------ae~~Kl~~N 220 (480)
.+-. . ..+. .+++|+ +.+..+.++++|+... ..++ ..|+.. +...|+.+|
T Consensus 116 ~ei~--~--~~~~~~~~ag~-----~~~~~~~v~~ll~~~~--~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N 184 (308)
T PRK14619 116 KEIQ--Q--GLPAATVVASR-----DLAAAETVQQIFSSER--FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTN 184 (308)
T ss_pred HHHh--c--CCCeEEEEEeC-----CHHHHHHHHHHhCCCc--EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCcc
Confidence 2200 0 0111 244444 3788999999999864 2443 344322 334458889
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-CC------CCccccCCCCCcccch----------------hhhH
Q 011654 221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGKDT-RI------GPRFLNSSVGFGGSCF----------------QKDI 277 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~-~~------~~~~~~pg~g~gg~cl----------------~kD~ 277 (480)
...++....++|+..+++++|+|+..+++..+... .. +.++ .+ ||.-.-. .||.
T Consensus 185 ~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~~--g~~l~~g~~~~~~~~~~~~~~eG~~~~ 261 (308)
T PRK14619 185 AKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-QV--GYGLAQGKSLEQILAELEGTAEGVNTA 261 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-HH--HHHHHCCCCHHHHHHhcCCEeecHHHH
Confidence 99999999999999999999999999987543221 00 1111 22 2211122 6899
Q ss_pred HHHHHHHHHcCCchhhhHHHHHHHH--HHHhHHHHHHHHHH
Q 011654 278 LNLVYICECNGLTEVANYWKQVIKV--NDYQKNRFVNRIVS 316 (480)
Q Consensus 278 ~~l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~ 316 (480)
..+.+++++.|++ .++...+.++ |+.-|+.+++.+++
T Consensus 262 ~~~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 262 NVLVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME 300 (308)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 9999999999998 6777766543 44556666666544
No 34
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.79 E-value=1.9e-17 Score=166.80 Aligned_cols=263 Identities=13% Similarity=0.039 Sum_probs=180.2
Q ss_pred cEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh
Q 011654 2 VKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61 (480)
Q Consensus 2 mkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~ 61 (480)
|||+|.|+|+- |.+||.+|+++ ||+|++||++++..+.-+ .+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~----------~~~l~--- 65 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEEL----------WKKVE--- 65 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHH----------HHHHH---
Confidence 89999999964 99999999998 999999999987543200 00010
Q ss_pred cCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH-HHHHHH
Q 011654 62 RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA-EAIEKI 140 (480)
Q Consensus 62 ~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~ 140 (480)
..+++++++..+++++||+||+|+|++ ..++++++++.+.++++++|++.||+++.+. +.+.+.
T Consensus 66 -~~Gi~~asd~~eaa~~ADvVIlaVP~~--------------~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 66 -DAGVKVVSDDAEAAKHGEIHILFTPFG--------------KKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred -HCCCEEeCCHHHHHhCCCEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 124677788888889999999999853 1357788899999999999999999988876 667666
Q ss_pred HHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCC---CcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhh
Q 011654 141 LTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE---TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKL 217 (480)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~---~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl 217 (480)
+........+. ...|-.. +|.....+ .++.|+.. ...+++.+++++++|+.++ .++++.+++.+..+|+
T Consensus 131 l~~~~~~~gi~-~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~~~vk~ 202 (342)
T PRK12557 131 LRTKRKDVGIS-SMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVVSAVAD 202 (342)
T ss_pred hcccccccCee-ecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHH
Confidence 64321111111 1123211 12111111 24444411 1124788899999999985 4677778899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHH
Q 011654 218 AANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWK 297 (480)
Q Consensus 218 ~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~ 297 (480)
++|.+.++.++...|...++++.|.++.++.+-+....-.+..-+--.-|+.|--=.-||..|+..|++..+.+..+.+.
T Consensus 203 ~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (342)
T PRK12557 203 MGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLD 282 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhhhhHH
Confidence 99999999999999999999999999999888665433111111111112333333348889999999877765555566
Q ss_pred HHHHH
Q 011654 298 QVIKV 302 (480)
Q Consensus 298 ~~~~~ 302 (480)
++.++
T Consensus 283 ~~~~~ 287 (342)
T PRK12557 283 AALEI 287 (342)
T ss_pred HHHHH
Confidence 55544
No 35
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.78 E-value=1.1e-17 Score=168.54 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=167.3
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEE
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPK--------IEVAVVDI-----SVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFF 68 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~ 68 (480)
||+|||.|.||+++|..|+++ | |+|.+|.+ +++..+.+++.+ ++.+.|++. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 778888888653 454555542 1346889
Q ss_pred ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cccc--hHHHHHHHHHhcC
Q 011654 69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVK--TAEAIEKILTHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~ 145 (480)
++|++++++++|+||++||+ ..++++++++.+++++++++|..+. +.+. +...+.+++++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 3478889999999988887776654 5555 6667777777654
Q ss_pred CCCceeEeeCCccccccccccccCCCCeEEEEeCCCcch----HHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-----
Q 011654 146 REIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG----QKAIQALKDVYAHWVPEDRIIT-TNLWSAELS----- 215 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~----- 215 (480)
+..+.++++|.++.+-.. ..|..+++++. + .+..+.++++|++- ..+++. .|+...|+.
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~--~frv~~s~Dv~GvEl~galKN 206 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRP--YFRVNVVDDVAGVEIAGALKN 206 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCC--CEEEEEcCCcccchhhHHHHH
Confidence 346788999998776432 34566778887 5 78899999999863 234554 576655544
Q ss_pred ------------hhHHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 011654 216 ------------KLAANAFLAQRISSVNAMSALCEATGADVT--QVSHAIGK 253 (480)
Q Consensus 216 ------------Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~ 253 (480)
++-.|+..++....++||.++++.+|.+++ +++...+.
T Consensus 207 v~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 207 VVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 466788899999999999999999998766 66665553
No 36
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=2.3e-17 Score=167.34 Aligned_cols=220 Identities=16% Similarity=0.119 Sum_probs=164.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-CCCC-ChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-IYEP-GLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~-~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||+++|..|+++ | +|++|.++++.++.+++.+.. .+.+ +. . ...++.+++|+.+++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 688999999999999976432 2222 11 0 12457889999888899
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||+ ..++++++++.++++++++|+.. ..++.++.+.+.+.+++...+..+.+..+|.
T Consensus 78 aDlVilavps---------------~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPS---------------HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCH---------------HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 9999999985 24688999999999887766544 4677777777777776643223456778888
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEE-eCChhHHHHhhhHHhH---------------
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRII-TTNLWSAELSKLAANA--------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~~~~~~ae~~Kl~~N~--------------- 221 (480)
++.+... ..+..+++++. +++..+.++++|+.-. .+++ ..|+...||.|.+.|.
T Consensus 143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~--~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~ 212 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR--FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGE 212 (341)
T ss_pred HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC--EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7765221 12334667776 4778899999998742 3444 4699999999877664
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 222 --FLAQRISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++....++|+.++++++|.+++++....+..
T Consensus 213 n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~G 247 (341)
T PRK12439 213 NTRAMVIARALREMTKLGVAMGGNPETFAGLAGMG 247 (341)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcccccccchhh
Confidence 456677899999999999999999988876643
No 37
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=1.2e-17 Score=169.25 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=168.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHCC-CCCCCCCChHHHHHhhcCCCEEE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-------IEVAVVDISVS-----RIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~ 68 (480)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++. +++.|.|++. ...++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999986 48888865 4666777764 2467899
Q ss_pred ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh--hCCCCCEEEEec-CCccchH--HHHHHHHHh
Q 011654 69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN--VSNSNKIVVEKS-TVPVKTA--EAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~S-Tv~~gt~--~~l~~~l~~ 143 (480)
++|+.++++++|+|+++||+ ..++++++++.+ +++++.+||..+ .+.+.+. ..+.+++++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 246888999988 777776776555 3555443 446666665
Q ss_pred cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-------
Q 011654 144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELS------- 215 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~------- 215 (480)
.. +..+.++++|.++.+-.. ..|..+++++. +++..+.++++|++- ..+++. .|+...|+.
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~--~frvy~s~Dv~GvEl~galKNvi 217 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRP--YFKINCVPDVIGVEVCGALKNII 217 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCC--cEEEEEcCCcccchhhHHHHHHH
Confidence 44 235778899988776432 34667788887 588899999999863 234554 466555543
Q ss_pred ----------hhHHhHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHhcCC
Q 011654 216 ----------KLAANAFLAQRISSVNAMSALCEATGA--DVTQVSHAIGKD 254 (480)
Q Consensus 216 ----------Kl~~N~~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~~~~~~ 254 (480)
++..|+..++....++||.++++++|. ++++++..++.+
T Consensus 218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~G 268 (365)
T PTZ00345 218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLA 268 (365)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHh
Confidence 566888999999999999999999974 888888877643
No 38
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=6.9e-17 Score=164.13 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=164.7
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCC-CChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYE-PGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e-~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++. .+.+++....+.. .+.+.. ...++++++++.+ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 58999999999999999999998 999999999764 4667654332221 111100 1123456677774 57899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 256778888888888877654 4566666667666543210 000001111233
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH-------------
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR------------- 226 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (480)
+||...... ..++.+|.. +..+.+.++|+.... ...+..|+..++|.|++.|++..++
T Consensus 138 ~pg~~~~~~--~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQGT--SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEecC--CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 445432211 123455532 346788999987642 3456679999999999999755555
Q ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHhcCC--------CC----CCCccccCCCCCcccchhhhHH---------
Q 011654 227 -------ISSVNAMSALCEATGADVTQVSHAIGKD--------TR----IGPRFLNSSVGFGGSCFQKDIL--------- 278 (480)
Q Consensus 227 -------ia~~nE~~~l~~~~Gid~~~v~~~~~~~--------~~----~~~~~~~pg~g~gg~cl~kD~~--------- 278 (480)
...+.|...+|++.|+++..+..+.... .. +...++...+. ....+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 3789999999999999865433222111 00 00001111111 1356899999
Q ss_pred ---HHHHHHHHcCCchhhhHHH
Q 011654 279 ---NLVYICECNGLTEVANYWK 297 (480)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~ 297 (480)
++++.|+++|++ .++.+
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~ 307 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNA 307 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHH
Confidence 799999999998 55444
No 39
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=9.3e-16 Score=141.59 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=155.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH---hcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH---VAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
|+|+.||||.||..|..+|.+. ||+|++||+|++.++.+.... .+.++++++. +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 8999999999999999999998 999999999999999988631 2233344332 356
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
..+|.++||... ...++++++++.|.++.+||+-...-...+.+-.+.+++.+ ++++.+-..
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg----i~flD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG----IHFLDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC----CeEEeccCC
Confidence 689999998531 24688999999999999999753322222222233455543 333443332
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC--eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED--RIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
.+.-.+ ...-.+||||+ +++.+++.++|..+.++. -.+++..+++..+|+++|-.-.-.++.++|-..+
T Consensus 122 GG~~G~----~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGVWGA----ERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCchhh----hcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 222112 22236899996 899999999999987532 3456788999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCC
Q 011654 237 CEAT--GADVTQVSHAIGKDTRIG 258 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~ 258 (480)
.++. ..|.++|.++.+..+-|+
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIr 216 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIR 216 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHH
Confidence 8885 688999999999887553
No 40
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=1.4e-15 Score=153.61 Aligned_cols=215 Identities=17% Similarity=0.209 Sum_probs=146.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.+++.+ ...+.++.. ...++++++++.+++ .++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999998 999999999999999998743 221122211 123577888888766 589
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
|+||+|||+. .+.++++++.+ ++.+++.|+ ....+...+.....+.+.+......+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999852 36788899988 877776554 334443332222223333322112344556776
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhH---------------
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANA--------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~--------------- 221 (480)
+..+... ..+..+++++. +.+..+.+.++|+.-. .++ ...|+...+|.|++.|+
T Consensus 138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~--~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~ 207 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN--LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGN 207 (326)
T ss_pred HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC--eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCc
Confidence 5443221 13345666665 3556777888887642 244 44699999999998775
Q ss_pred --HHHHHHHHHHHHHHHHHHhCC--CHHHHHH
Q 011654 222 --FLAQRISSVNAMSALCEATGA--DVTQVSH 249 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~ 249 (480)
..++....++|+..+++++|. +.++++.
T Consensus 208 n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~g 239 (326)
T PRK14620 208 NAHAAVITKGMNEIKTLYSAKNGSIDLNTLIG 239 (326)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc
Confidence 344556789999999999987 7788854
No 41
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.73 E-value=3.1e-16 Score=166.52 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=142.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-------CCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-------QLPIYEPGLEDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-------~~~~~e~~l~~l~~~~~~~~l~~t~d~~ 73 (480)
||||+|||+|.||.+||..|+++ |++|++||+++++.+.+.+. ...+... .+ ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~---~~---~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDA---PL---PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccc---hh---hhhhceEeeCCHH
Confidence 58999999999999999999998 99999999999988765421 0000000 00 0124578899998
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEe
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQIL 153 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
+++++||+|++|||+.. ++ .+.++.++.+.++++. ||.+||..+..+ .+.+.+... .-.+.
T Consensus 76 ea~~~aD~Vieavpe~~-----------~v--k~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~----~r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DL--KRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHP----ERLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HH--HHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCc----ceEEE
Confidence 88999999999998642 22 2456677888887776 556777765543 444444332 12344
Q ss_pred eCC---ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH-HHH
Q 011654 154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR-ISS 229 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~-ia~ 229 (480)
.+| ....+ + ..+++++.+ +++.++++.++|+.+++ .+++.. |.+.|....-. .++
T Consensus 137 ~hP~nP~~~~~------L----vevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 137 AHPYNPVYLLP------L----VELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL 195 (495)
T ss_pred EecCCCcccCc------e----EEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence 454 32221 1 235666533 68999999999999863 344443 45555544444 455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654 230 VNAMSALCEATGADVTQVSHAIGKDT 255 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
++|+..++++.|+|++++.++++..+
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~ 221 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSF 221 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhcc
Confidence 79999999999999999999998775
No 42
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1.4e-16 Score=158.17 Aligned_cols=214 Identities=20% Similarity=0.266 Sum_probs=145.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChH-----HHHHhhcCCCEEEecCHHHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLE-----DVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~-----~l~~~~~~~~l~~t~d~~~a 75 (480)
|.||+|||+|.||.++|..|+++ |++|++||++++.++.+++...++.+++.+ +--.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57999999999999999999998 999999999999998876532111111100 00000012357888999888
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeEee
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+++||+||+|+|++. ...+.++.++.+++++++++ +++||+++.... +.+.....-...+..
T Consensus 79 ~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~---~~~~~~~r~~g~h~~- 141 (288)
T PRK09260 79 VADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTMSPTEIA---SFTKRPERVIAMHFF- 141 (288)
T ss_pred hcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH---hhcCCcccEEEEecC-
Confidence 999999999999642 22356677888889999876 688999886533 323221100011222
Q ss_pred CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
+|....+ + ..|+++..+ ++++++++++++..+++ .++++.+ ...++.| .+..+++||..
T Consensus 142 ~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~d-----~~Gf~~n---Rl~~~~~~ea~ 200 (288)
T PRK09260 142 NPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVNE-----FPGFVTS---RISALVGNEAF 200 (288)
T ss_pred CCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEecC-----cccHHHH---HHHHHHHHHHH
Confidence 5653321 1 245666433 68999999999999863 4455543 4456666 45578999999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011654 235 ALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+.+.--.+++++..++...
T Consensus 201 ~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 201 YMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHcCCCCHHHHHHHHHhC
Confidence 99987667899999887544
No 43
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=1.2e-15 Score=152.31 Aligned_cols=211 Identities=19% Similarity=0.196 Sum_probs=142.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-----hhcCCCEEEecCHHHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-----QCRGRNLFFSTDIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-----~~~~~~l~~t~d~~~a 75 (480)
|.||+|||+|.||.++|..|+.+ |++|++||++++..+.+.+... ..++.+.+ ....++++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence 46899999999999999999998 9999999999987765432100 00111110 0012467889999988
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEe--
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQIL-- 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~-- 153 (480)
+++||+|+.|||.. .+++ +..++++.+++++++ |+.+||.+.. ...++..+..-. .|..+
T Consensus 81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l~-~s~la~~~~~p~---R~~g~Hf 142 (321)
T PRK07066 81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGLL-PTDFYARATHPE---RCVVGHP 142 (321)
T ss_pred hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCccC-HHHHHHhcCCcc---cEEEEec
Confidence 99999999999863 3443 677789999999888 5555665332 233433332211 12111
Q ss_pred eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHH
Q 011654 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
++|.+..|- . -|+ .+.. +++++++.+.+++..+++ .++.+.. +...++.| .+..+++||.
T Consensus 143 fnP~~~~pL------V---EVv-~g~~--T~~e~~~~~~~f~~~lGk-~pV~v~k----d~pGFi~N---Rl~~a~~~EA 202 (321)
T PRK07066 143 FNPVYLLPL------V---EVL-GGER--TAPEAVDAAMGIYRALGM-RPLHVRK----EVPGFIAD---RLLEALWREA 202 (321)
T ss_pred CCccccCce------E---EEe-CCCC--CCHHHHHHHHHHHHHcCC-EeEecCC----CCccHHHH---HHHHHHHHHH
Confidence 244333321 0 233 4443 379999999999999863 4555521 23456777 5678999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCC
Q 011654 234 SALCEATGADVTQVSHAIGKDT 255 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
..+.++..++++++..++..++
T Consensus 203 ~~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCC
Confidence 9999998899999999987665
No 44
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.68 E-value=1.4e-14 Score=142.70 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=130.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|.++ |+ +|++||+++++.+.+.+. +....++++.++ .++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALEL------------------GLVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHC------------------CCCcccCCHHHH-hcC
Confidence 6999999999999999999987 64 899999999988876542 111123456664 459
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|||.. .+.+++.++.+ ++++++|++.+++.....+ .+.+... .. ++..+|..
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~----~~~~~~~-~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKIIE----SVPKHIR-KN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHHH----HHHHhcC-CC-EEecCCcCc
Confidence 9999999853 24667788888 8889989876665443333 3332211 12 45566743
Q ss_pred ---ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.++..+..+++....+++. ..+..+++..+.++++|+.++. .+++....+..+++|++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~-~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLC-DVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 3455554444443233332 2222357788999999999852 334445567789999999987755555443331
Q ss_pred HHHHhCCCHHHHHHHhcC
Q 011654 236 LCEATGADVTQVSHAIGK 253 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~ 253 (480)
.+.|..++...++.
T Consensus 195 ----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 195 ----KEEDERNIFDLAGG 208 (275)
T ss_pred ----hcCChHHHHhhccc
Confidence 25566665555543
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.68 E-value=3.4e-13 Score=147.22 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=104.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+ -++..++++++.+ .++|
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7899999999999999999988 8999999998554 22221 1234566777744 5699
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHH-hhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-NVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||. ..+.++++++. ++++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999983 23567777775 57888999998876654433444444322 222 567788664
Q ss_pred cccccccccCCCCeEEEEe--CCCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654 160 AEGTAIQDLFNPDRVLIGG--RETPEGQKAIQALKDVYAHWVPEDRIITTNLWS 211 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~--~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+. ...++.....++.+. .++....+.++.+.++|+.++ .+++.++++.
T Consensus 172 ~e~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee 222 (667)
T PLN02712 172 PQS-AKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREG--CKMVEMSCTE 222 (667)
T ss_pred Ccc-ccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 431 111111112222221 111112345677789999884 5777777654
No 46
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.67 E-value=1.4e-14 Score=143.11 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=129.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCE-EEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNL-FFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l-~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.++|..|+++ |++|++||++++..+.+.+. +.+ ..+++. +++++||
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~------------------g~~~~~~~~~-~~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER------------------GLVDEASTDL-SLLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC------------------CCcccccCCH-hHhcCCC
Confidence 7999999999999999999998 99999999999988877642 111 133444 3578999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc--
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF-- 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-- 158 (480)
+||+|+|.. .+.++++++.++++++++|++.+++.+...+.+.+... . ++..+|-.
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999999842 34567788888888899998888777655444332211 1 34445643
Q ss_pred --ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhHHHHHHHHHHHHH
Q 011654 159 --LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.+...+..+++....+++ .+.+..+++..+.++++++.++ ..+ +....+..+.+++++|....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG--~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLG--SKIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333334444444333333 2333446788999999999985 344 45556789999999998776666665544
No 47
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.66 E-value=6.9e-15 Score=156.18 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=141.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH------------CCCCCCCCCChHHHHHhhcCCCEEE
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN------------GDQLPIYEPGLEDVVTQCRGRNLFF 68 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~l~~~~~~~~l~~ 68 (480)
|.||+|||+|.||.+||.+|+.+ |++|++||++++.++... +|. +.+...+.. ..+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~--~~~~~~~~~-----~~~i~~ 77 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGK--LTAEQADAA-----LARLRP 77 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHH-----HhCeEE
Confidence 35899999999999999999998 999999999999888742 221 111111111 246889
Q ss_pred ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCC-
Q 011654 69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSR- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~- 146 (480)
++++++ +.+||+||.|||+.. +++ +.++.++...+++++++ +++||+++. .++..+.....
T Consensus 78 ~~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~ 140 (507)
T PRK08268 78 VEALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV 140 (507)
T ss_pred eCCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE
Confidence 999976 789999999998643 222 45567788888889988 578999885 23333322110
Q ss_pred -CCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHH
Q 011654 147 -EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLA 224 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~ 224 (480)
|..| ++|....+ + ..|+++..+ ++++++.+.+++..+.+ .++++.+ ++ ++.|.+.
T Consensus 141 ~G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrll- 197 (507)
T PRK08268 141 AGLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRAA- 197 (507)
T ss_pred EEEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHHH-
Confidence 1111 23332221 1 235665433 68999999999999874 5666665 34 5666444
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 225 QRISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..+++|...++++.++|++++.+++...
T Consensus 198 --~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 198 --RPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 4699999999999999999999998654
No 48
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.65 E-value=2.2e-14 Score=143.34 Aligned_cols=212 Identities=18% Similarity=0.181 Sum_probs=140.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|+++++ +++++.+++....+.+++.+.. -....+++.+++...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999998 999999999 8888888865433322211100 012245666665689999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-cc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF-LA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (480)
||+|||++. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 999998642 467788888888887766643 334455555655553321 01123333333 34
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH------------------
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF------------------ 222 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------ 222 (480)
+|..... .+.++.+|..+.. ..+..+.+.++|..... ......|+..++|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 5554333 3446778864321 23456667777776532 234567999999999998853
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCH
Q 011654 223 ---LAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456678999999999999863
No 49
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.65 E-value=5.7e-16 Score=139.73 Aligned_cols=150 Identities=24% Similarity=0.341 Sum_probs=110.1
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||+|.||+++|..|+++ |++|++|.++++.++.+++.+ ++.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 899999999999999999999 999999999999999999743 344444421 13468899999999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||+. .++++++++.++++++++++..+. +.+++...+.+++++......+.++++|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999863 257899999999999998887664 45666666777776654323388899998877
Q ss_pred ccccccccCCCCeEEEEeC
Q 011654 161 EGTAIQDLFNPDRVLIGGR 179 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~ 179 (480)
+-.. ..|..+++++.
T Consensus 138 Ei~~----~~pt~~~~as~ 152 (157)
T PF01210_consen 138 EIAE----GKPTAVVIASK 152 (157)
T ss_dssp HHHT----T--EEEEEEES
T ss_pred HHHc----CCCeEEEEEec
Confidence 6332 34556778876
No 50
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=2e-14 Score=142.55 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=139.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC---CCCCCC--Ch--HHHHHhhcCCCEEEecCHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ---LPIYEP--GL--EDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~~e~--~l--~~l~~~~~~~~l~~t~d~~ 73 (480)
|+||+|||+|.||.++|..|+.+ |++|++||++++.++.+++.. .+..++ .+ ++... ....++++++|++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence 47999999999999999999998 999999999999887765421 000000 00 00000 0124788999999
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeE
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQI 152 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+++++||+||+|+|+.. ...+++++++.+.++++++| .++||.++.. +.+.+... .. ++
T Consensus 80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~v 139 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FL 139 (287)
T ss_pred HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EE
Confidence 88999999999998642 33577788899999988887 4556665532 22222211 11 23
Q ss_pred eeCCccccccccccccCCCCe-EEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654 153 LSNPEFLAEGTAIQDLFNPDR-VLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~-vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..+| ..|. ...+. .++.+. .+++++++.+.+++..+++ .++.+.. +...++.| .+..+++|
T Consensus 140 g~Hf--~~p~------~~~~lvevv~~~--~t~~~~~~~~~~~~~~~Gk-~pv~v~~----d~pgfi~n---Ri~~~~~~ 201 (287)
T PRK08293 140 ALHF--ANEI------WKNNTAEIMGHP--GTDPEVFDTVVAFAKAIGM-VPIVLKK----EQPGYILN---SLLVPFLS 201 (287)
T ss_pred EEcC--CCCC------CcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCC-eEEEecC----CCCCHhHH---HHHHHHHH
Confidence 3333 1111 11111 233332 3478999999999999863 3444431 23345556 45578999
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCC
Q 011654 232 AMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
|...+.++..++++++..++...
T Consensus 202 ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 202 AALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhc
Confidence 99999998779999999987644
No 51
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.64 E-value=1.4e-14 Score=153.42 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=139.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||.+||.+|+++ ||+|++||++++.++...+. .-.+.+...+.. ..+++.++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~-----~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERT-----LKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-----HhccEEeC
Confidence 47899999999999999999998 99999999999988764321 000000111111 24678899
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++ +++||+||.|||+.. ++ -+.++.++.+.+++++++. ++||+++. .++..+..... |
T Consensus 78 ~~~~-l~~aDlVIEav~E~~-----------~v--K~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G 140 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENL-----------EV--KKALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAG 140 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcH-----------HH--HHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEE
Confidence 9976 789999999998642 22 3556778888888888764 45566653 23333322111 2
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|....+ + ..|+++..| ++++++.+.+++..+++ .++++.+... ++.|.+. .
T Consensus 141 ~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl~---~ 196 (503)
T TIGR02279 141 LHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNRVA---R 196 (503)
T ss_pred Eec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHHHH---H
Confidence 222 23332221 1 235676533 68999999999999874 4566665322 3556433 5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|...+.++.+++++++.+++...
T Consensus 197 ~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 197 PYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 799999999999999999999999754
No 52
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=9.7e-14 Score=139.25 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=135.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC---CCC-CCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ---LPI-YEPGLEDVVTQCRGRNLFFSTDIEKHV 76 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~-~e~~l~~l~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++.. ... .+.+.... ..+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASA----GMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHH----HhhceEEeCCHHHHh
Confidence 47899999999999999999998 999999999999988876520 000 00011000 013577888888888
Q ss_pred ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++||+||+|||... .....++.++.+.++++++|+ ++|.... ...+.+.+.... . .+..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998642 123566777877777766554 4444333 334544443211 1 222232
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-C-hhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-N-LWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~-~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
. .+.... .+ ..++.+. ..+++.++.+.++++.++. ..+... + ++. +++|. ..++++|..
T Consensus 139 ~--~p~~~~-~l----~~i~~g~--~t~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~----~~~~~~Ea~ 199 (311)
T PRK06130 139 F--TPADVI-PL----VEVVRGD--KTSPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRI----QHALAREAI 199 (311)
T ss_pred C--CCCccC-ce----EEEeCCC--CCCHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHH----HHHHHHHHH
Confidence 1 111110 01 1233443 2368899999999999863 344443 3 222 55554 357899999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011654 235 ALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.++++.|+|++++.+++...
T Consensus 200 ~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 200 SLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHcCCCCHHHHHHHHHhc
Confidence 99999999999999999754
No 53
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.62 E-value=3.5e-13 Score=140.89 Aligned_cols=202 Identities=18% Similarity=0.210 Sum_probs=140.1
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||.++|..|..+ |++|++||+++++.+.+... .++.++++..+++.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998876554431 12455677778889999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.+...+.+.+.+.. +.. ++..+|.+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999999842 346778889999999999999888776666666655432 122 355567653
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+... .+....+++ .+....+++..+.++++|+.++ .+++.++++ +--|++.++....++.+...+..+ .++
T Consensus 121 p~~~---~~~g~~~il-~p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~l-~~~ 191 (437)
T PRK08655 121 PRTP---SLKGQVVIL-TPTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIASTL-KRL 191 (437)
T ss_pred CCCc---ccCCCEEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence 3221 122223333 2222235778899999999874 467776655 556777776666666666554444 667
Q ss_pred CCCHHHHHHHhc
Q 011654 241 GADVTQVSHAIG 252 (480)
Q Consensus 241 Gid~~~v~~~~~ 252 (480)
|.|..+....++
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888877655444
No 54
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=5.1e-14 Score=140.01 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=134.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
++||+|||+|.||.++|..|+.+ |++|++||++++.++.+.+. ...+.+...+.. ..++++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeC
Confidence 36899999999999999999998 99999999999988764321 001111111111 13578888
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCc
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
++++ +++||+||+|||+.. .....+++++.+.++++++|+ ++||+++. .+++.+.....-..
T Consensus 77 ~~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g 139 (292)
T PRK07530 77 DLED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIG 139 (292)
T ss_pred CHHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEE
Confidence 8864 899999999998642 223566788999999998876 55666543 34443322110000
Q ss_pred eeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHH
Q 011654 150 YQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
.+. +.|....++. .++.| . .++++.++.+.++++.+++ .+++..+.. .+++++ +...+
T Consensus 140 ~h~-~~p~~~~~~v---------ei~~g-~--~t~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~~ 197 (292)
T PRK07530 140 IHF-MNPVPVMKLV---------ELIRG-I--ATDEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLPM 197 (292)
T ss_pred eec-cCCcccCceE---------EEeCC-C--CCCHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHHH
Confidence 111 2233322221 13333 2 2268999999999999864 455555433 455554 34677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 230 VNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+||...+.++.-.+++++..++...
T Consensus 198 ~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 198 INEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 8999988887556899999887533
No 55
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.4e-13 Score=134.48 Aligned_cols=207 Identities=17% Similarity=0.203 Sum_probs=135.2
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---------hcCCCEEEecC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---------CRGRNLFFSTD 71 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---------~~~~~l~~t~d 71 (480)
|+||+|||+|+||.++|..|+++ |++|+++|+++++++...+. + +..++.+.+. ....+++++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~---i-~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLAT---I-TKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHH---H-HHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 46899999999999999999998 99999999999988532210 0 0001111110 00136788889
Q ss_pred HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654 72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ 151 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
+++ +++||+||+|+|... ..-.++++++.++++++++|+ ++|.....+ .+++.+.... . .
T Consensus 77 ~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~---r-~ 136 (282)
T PRK05808 77 LDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPD---K-V 136 (282)
T ss_pred HHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCc---c-e
Confidence 865 899999999998422 223578889999999988773 344433333 4544443221 1 2
Q ss_pred Eee---CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHH
Q 011654 152 ILS---NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 152 v~~---~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+.. .|....++- .++-| . .++++..+.+.++++.++. .++.+.+ ...++.| .+..+
T Consensus 137 ig~h~~~P~~~~~~v---------ev~~g-~--~t~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~---Ri~~~ 195 (282)
T PRK05808 137 IGMHFFNPVPVMKLV---------EIIRG-L--ATSDATHEAVEALAKKIGK-TPVEVKN-----APGFVVN---RILIP 195 (282)
T ss_pred EEeeccCCcccCccE---------EEeCC-C--CCCHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHH---HHHHH
Confidence 222 333332221 13323 2 2368999999999999864 4455543 3345656 56688
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 229 SVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++||...+.++.-.+++++..++..+
T Consensus 196 ~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 196 MINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 99999999988778899999888533
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.60 E-value=4.7e-14 Score=140.20 Aligned_cols=206 Identities=13% Similarity=0.109 Sum_probs=134.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC----CCC---------CCCCCChHHHHHhhcCCCEE
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG----DQL---------PIYEPGLEDVVTQCRGRNLF 67 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~---------~~~e~~l~~l~~~~~~~~l~ 67 (480)
|.||+|||+|.||.++|..|+.+ |++|++||++++.++...+ +.. .+.+...+++ ..++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAI-----MARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHH-----HhCcE
Confidence 36899999999999999999998 9999999999998875432 100 0001111111 13567
Q ss_pred EecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCC
Q 011654 68 FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSRE 147 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g 147 (480)
++++. +++++||+||+|+|++. ....++++++.+.++++++++ ++|.. -+...++..+....
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~tsg-~~~~~la~~~~~~~-- 137 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTSG-IMIAEIATALERKD-- 137 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCCC-CCHHHHHhhcCCcc--
Confidence 78887 46899999999998642 224667788888888888765 33322 23344544443211
Q ss_pred CceeEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHH
Q 011654 148 IKYQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLA 224 (480)
Q Consensus 148 ~~~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~ 224 (480)
.| +. +.|....++- .++ .+. .+++++++.+.++++.+++ .++++.+....-..|+..|
T Consensus 138 -r~-ig~hf~~P~~~~~~v---------Ev~-~g~--~T~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~---- 198 (291)
T PRK06035 138 -RF-IGMHWFNPAPVMKLI---------EVV-RAA--LTSEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG---- 198 (291)
T ss_pred -cE-EEEecCCCcccCccE---------EEe-CCC--CCCHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH----
Confidence 11 11 2333332221 233 233 2368999999999999874 4566677666666666655
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 225 QRISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++||+..+.+.--++++++..++...
T Consensus 199 ----~~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 199 ----WLLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred ----HHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 78899999887557899999987543
No 57
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=1.6e-13 Score=135.76 Aligned_cols=207 Identities=13% Similarity=0.134 Sum_probs=135.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||.+||..|+.+ |++|++||++++.++...+. .-.+.+...+.. ..+++.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAA-----LARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHH-----HhCeEeeC
Confidence 35899999999999999999998 99999999999988762211 001111111111 24788999
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhC-CCCCEEEEecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVS-NSNKIVVEKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||... ++ -+..+..+.+.+ +++++++..||..+-+. ++..+..... +
T Consensus 78 ~~~-~~~~~d~ViEav~E~~-----------~~--K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~~~r~~g 141 (286)
T PRK07819 78 DLG-DFADRQLVIEAVVEDE-----------AV--KTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKRPGRVLG 141 (286)
T ss_pred CHH-HhCCCCEEEEecccCH-----------HH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCCccEEE
Confidence 995 4899999999998632 22 356677888888 78888876554433322 2222211110 1
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHh-ccCCCCeEEeCChhHHHHhhhHHhHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYA-HWVPEDRIITTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
.. .++|....+.- .++.|.. +++++++.+.+++. .+.+ .++.+.+ ...++-| .+.
T Consensus 142 ~h---f~~P~~~~~lv---------Elv~~~~---T~~~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~n---Ri~ 197 (286)
T PRK07819 142 LH---FFNPVPVLPLV---------ELVPTLV---TSEATVARAEEFASDVLGK-QVVRAQD-----RSGFVVN---ALL 197 (286)
T ss_pred Ee---cCCCcccCceE---------EEeCCCC---CCHHHHHHHHHHHHHhCCC-CceEecC-----CCChHHH---HHH
Confidence 11 12443333221 3554433 26899999999987 4753 4555543 3345666 466
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 227 ISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++||...+.++--.+++++..++...
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 8999999999987768899999888543
No 58
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.56 E-value=2.1e-13 Score=135.80 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=133.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---------hcCCCEEEecC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---------CRGRNLFFSTD 71 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---------~~~~~l~~t~d 71 (480)
|+||+|||+|.||.++|..|+.+ |++|++||++++.++...+.. +..++.+.+. ...++++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSI----SSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 46899999999999999999998 999999999998876432110 0000111100 01135677777
Q ss_pred HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCce
Q 011654 72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKY 150 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
.+ ++++||+||+|||... + ....++.++.+.++++++|+ ++||+++.. +++.+.....-...
T Consensus 78 ~~-~~~~aD~Vieav~e~~-----------~--~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~ 140 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESE-----------D--LKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGM 140 (295)
T ss_pred HH-HhCCCCEEEEcCccCH-----------H--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEE
Confidence 75 5899999999998642 2 23566778888889888875 667776554 33333221100011
Q ss_pred eEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+. ++|....+. ..++++. .++++..+.++++++.++. ..+++.+.. .++.| .+..+++
T Consensus 141 h~-~~pp~~~~l----------veiv~g~--~t~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~~~ 198 (295)
T PLN02545 141 HF-MNPPPIMKL----------VEIIRGA--DTSDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMPMI 198 (295)
T ss_pred ec-cCCcccCce----------EEEeCCC--CCCHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHHHH
Confidence 11 122222111 1234443 2368899999999999864 344444432 23444 3457789
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 231 NAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
||...+.++...+++++..++...
T Consensus 199 ~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 199 NEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhc
Confidence 999999998778999999887543
No 59
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.54 E-value=1.1e-12 Score=127.96 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=110.9
Q ss_pred cEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHCCCCCCCCCChHH
Q 011654 2 VKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIA-----AWNGDQLPIYEPGLED 56 (480)
Q Consensus 2 mkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~ 56 (480)
|||+|.|+|+- |.+||.+|+++ ||+|++||+++++.+ .+.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 89999999964 99999999998 999999999987653 2332
Q ss_pred HHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 57 VVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 57 l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+...++++.++++++|+||+|+|++ ..++++++++.+.+++|++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 13456778889899999999999864 235677788999999999999999999988766
Q ss_pred -HHHHHHhcCCCCceeE-eeCCccccccccccccCCCCeEEEEeCC----CcchHHHHHHHHHHHhccC
Q 011654 137 -IEKILTHNSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAIQALKDVYAHWV 199 (480)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~~~~~~l~~~~~ 199 (480)
+.+.|+-.. .|+.| .++|- .-||..-++ ..++++.. .-.+++.++++.+|-+...
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~-~vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~ 186 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPA-AVPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTG 186 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCC-CCCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhC
Confidence 455554221 24444 35774 234443222 23344321 1235788889999888875
No 60
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.54 E-value=1.4e-12 Score=133.78 Aligned_cols=224 Identities=14% Similarity=0.150 Sum_probs=147.6
Q ss_pred CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+++|+||| +|.||.++|..|.++ |++|++||+++. +++++++++|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 47899998 999999999999998 999999998521 1334567899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|.. ...++++++.+ ++++++|++.|++.+...+.+.+.+. + .++..+|-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~--~fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G--PVLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C--CEEeeCCCCC
Confidence 9999999853 23566778888 88999999988876555555443221 1 2566788665
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh-hHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL-WSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+-.. + ....+++... +++++.+.+.++++.++ ..++.+++ +..+++++++-. .++..+.++..+++
T Consensus 202 ~~~~~---~-~~~~vv~~~~---~~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVGS---L-AKQVVVVCDG---RQPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCcc---c-CCCEEEEcCC---CCchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 43222 2 2222333322 14678889999999985 46666554 568899998833 55556666666666
Q ss_pred HhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHH-HHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654 239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILN-LVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS 317 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~-l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
.+.|..++.+..+ +|| +|... ..+.| +-+ +.+|......|.+.. ...+.+.+.
T Consensus 270 -~~~~~~~~~~~~~-------------~~f------r~~la~~tRia---~~~--p~lw~dI~~~N~~~~-~~l~~~~~~ 323 (374)
T PRK11199 270 -ENVDLEQLLALSS-------------PIY------RLELAMVGRLF---AQD--PQLYADIIMSSPENL-ALIKRYYQR 323 (374)
T ss_pred -cCCCHHHHHHhcC-------------hHH------HHHHHHHHHHH---cCC--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence 7788777654221 111 33222 23333 333 678888888887766 555655554
Q ss_pred h
Q 011654 318 M 318 (480)
Q Consensus 318 l 318 (480)
|
T Consensus 324 l 324 (374)
T PRK11199 324 F 324 (374)
T ss_pred H
Confidence 4
No 61
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.50 E-value=1.2e-12 Score=128.79 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=139.9
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
|+||+|||+|.||..+|..++.. |++|+++|++++.+++..+.. ..+.+...+.. .++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~-----l~~i~~~~ 75 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAA-----LARITPTT 75 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH-----HhhccccC
Confidence 58999999999999999999996 899999999987766543210 11111111221 24677888
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++. ++++||+|+.+|+.. .++ -+++++++..++++++++ .+.||+++.. ++..+..-.. |
T Consensus 76 ~~~-~l~~~DlVIEAv~E~-----------lev--K~~vf~~l~~~~~~~aIlASNTSsl~it~---ia~~~~rper~iG 138 (307)
T COG1250 76 DLA-ALKDADLVIEAVVED-----------LEL--KKQVFAELEALAKPDAILASNTSSLSITE---LAEALKRPERFIG 138 (307)
T ss_pred chh-HhccCCEEEEecccc-----------HHH--HHHHHHHHHhhcCCCcEEeeccCCCCHHH---HHHHhCCchhEEE
Confidence 887 589999999999863 333 478999999999999988 4556666543 2222211000 1
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|....+- -.|+ .+. .+++++++++.++...+.+ .++...| ...++.|. +..
T Consensus 139 ~HF---fNP~~~m~L---------VEvI-~g~--~T~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~NR---il~ 194 (307)
T COG1250 139 LHF---FNPVPLMPL---------VEVI-RGE--KTSDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVNR---LLA 194 (307)
T ss_pred Eec---cCCCCccee---------EEEe-cCC--CCCHHHHHHHHHHHHHcCC-CCEeecC-----CCceehHh---HHH
Confidence 111 244333221 0233 443 2378999999999999874 3444444 33467774 558
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+++|+..+.++-.+++++|..++...
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 899999999999889999999999864
No 62
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.50 E-value=1.7e-12 Score=129.59 Aligned_cols=209 Identities=21% Similarity=0.249 Sum_probs=137.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+.+|..|+++ |++|+++++++++++.+++....+ +.+ +. ...+..+++..+ +..+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~~-----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG--EI-----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC--ce-----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888643332 100 00 011234556665 489999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC-cccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP-EFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (480)
||+|+|+.. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+... -..+.+.+ .+..
T Consensus 70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPERV--LGGVVTHAAELEG 131 (304)
T ss_pred EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCcccE--EEEEEEEeeEecC
Confidence 999998531 467888898888877766643 3345555656555533210 01122222 2334
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-------------------
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
|+...+. ...++.+|..+. ..+..+.+.++|+.... ......|+...+|.|++.|+
T Consensus 132 p~~v~~~--~~g~~~ig~~~~--~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHT--GGGRLKIGEPDG--ESAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEc--CCCCEEEeCCCC--CcHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 5543322 224566786532 12346678888887542 22345689999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCH
Q 011654 222 --FLAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 23455678999999999998753
No 63
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.48 E-value=2.9e-12 Score=125.68 Aligned_cols=194 Identities=10% Similarity=0.145 Sum_probs=121.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI----EVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ |+ +|++| |+++++.+.+.+. +++.+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 8999999999999999999988 77 89999 9999988776542 345667777878
Q ss_pred ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeC
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
+++|+||+||| | ..++++++++.+.++++++||.. ++++. +.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~--------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~~---~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-P--------------QVVKDVLTELRPLLSKDKLLVSVAAGITL---ADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-c--------------HHHHHHHHHHHhhcCCCCEEEEecCCCcH---HHHHHHcCC----CC-EEEEC
Confidence 89999999996 3 23577888888888888877633 33332 233332221 11 11134
Q ss_pred CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhh--HHhHHHHHHHHHHHH
Q 011654 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKL--AANAFLAQRISSVNA 232 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl--~~N~~~~~~ia~~nE 232 (480)
|..... .. ....++..+. ..+++..+.++++|+.++ ..++. +... -..+-+ ...+|.+..+..+.|
T Consensus 117 P~~~~~---~~---~~~~~l~~~~--~~~~~~~~~v~~l~~~~G--~~~~~-~e~~~d~~~~~~g~g~a~~~~~~~a~~e 185 (266)
T PLN02688 117 PNTPCL---VG---EAASVMSLGP--AATADDRDLVATLFGAVG--KIWVV-DEKLLDAVTGLSGSGPAYIFLAIEALAD 185 (266)
T ss_pred CCcHHH---Hh---CceEEEEeCC--CCCHHHHHHHHHHHHhCC--CEEEe-CHHHcchhHhhhcCHHHHHHHHHHHHHH
Confidence 422111 00 0112233322 124788999999999985 33333 2110 000111 112344445555555
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 011654 233 MSALCEATGADVTQVSHAIGK 253 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~~~ 253 (480)
. +.+.|+|.+++.+++..
T Consensus 186 a---~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 186 G---GVAAGLPRDVALSLAAQ 203 (266)
T ss_pred H---HHHcCCCHHHHHHHHHH
Confidence 4 88999999999998754
No 64
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.9e-12 Score=127.84 Aligned_cols=207 Identities=13% Similarity=0.164 Sum_probs=152.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH---Hhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK---HVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
+.|||||||.||..+|.+++++ |+.|.+|+|++++.+.+.++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 4699999999999999999999 99999999999999988754211 112333333333 3567
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
..-|+++|... +.+.+.++++.++|.++.|||+-. +..+.|.++..++ .+.+ .. ++..+-.
T Consensus 68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~-FvG~GVS 129 (473)
T COG0362 68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--IL-FVGMGVS 129 (473)
T ss_pred CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--Ce-EEecccc
Confidence 78899998753 235678999999999999999874 4466777776543 3332 22 2333332
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC---CC--eEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP---ED--RIITTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~---~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
-..+| .+..|.+|.||. +++.+.+.++|..+.- +. ..+++.-+.+..+|+++|..-.--+.++.|
T Consensus 130 GGEeG-----A~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEG-----ARHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred ccccc-----cccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 22333 245667899996 8999999999998752 11 235566688999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc
Q 011654 233 MSALCEA-TGADVTQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~~~ 252 (480)
...+.+. +|++.+++.++..
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999988 8999888777664
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.46 E-value=1.3e-11 Score=123.59 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=111.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..|.+. | ++|++||+++++.+.+++... ....++++.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 6899999999999999999987 6 489999999998877664210 112345666778999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|+|.. .+.++++++.+.++++.+|++.+++.....+.+.+.+.. +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999999853 235667788888888998887766655444444333221 111 34445643
Q ss_pred ---ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh
Q 011654 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL 209 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 209 (480)
.+++.+..+++....+++.. ....+++.++.+.++++.++ ..++..++
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~-~~~~~~~~~~~~~~l~~~lG--~~~~~~~~ 179 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTP-PEGTDPAAVARLTAFWRALG--ARVEEMDP 179 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCH
Confidence 34444444555444444442 22235778899999999985 45655554
No 66
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.43 E-value=1.3e-11 Score=122.01 Aligned_cols=196 Identities=14% Similarity=0.203 Sum_probs=123.5
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
.|||+|||+|.||.+||..|.++ | ++|+++|+++ ++.+.+... .+++.++++.++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~ 62 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKEL 62 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHH
Confidence 38999999999999999999987 6 8999999975 466666531 124566777787
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEe-
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQIL- 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~- 153 (480)
+.+||+||+|||.. .+.++++++.+.++++++||.. +++.+.+.++ .+.. +..++
T Consensus 63 ~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~-----~~~v~r 119 (279)
T PRK07679 63 LTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQK-----DVPIIR 119 (279)
T ss_pred HhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-----CCeEEE
Confidence 88999999999842 2466778888888888888875 7777665444 2221 11222
Q ss_pred eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHH-HHhhhHH--hHHHHHHHHHH
Q 011654 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSA-ELSKLAA--NAFLAQRISSV 230 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~a-e~~Kl~~--N~~~~~~ia~~ 230 (480)
..|... .. . .....+++++.. .+++..+.++++|+.++ ..+... -+.- ..+-+.. ..|.. .++
T Consensus 120 ~mPn~~--~~-~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G--~~~~v~-e~~~~~~~a~~Gsgpa~~~---~~~ 185 (279)
T PRK07679 120 AMPNTS--AA-I---LKSATAISPSKH--ATAEHIQTAKALFETIG--LVSVVE-EEDMHAVTALSGSGPAYIY---YVV 185 (279)
T ss_pred ECCCHH--HH-H---hcccEEEeeCCC--CCHHHHHHHHHHHHhCC--cEEEeC-HHHhhhHHHhhcCHHHHHH---HHH
Confidence 233211 11 1 011135556542 25678899999999985 344432 1100 0011111 12322 233
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcC
Q 011654 231 NAMSALCEATGADVTQVSHAIGK 253 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
.-+...+.+.|+|.++..+++..
T Consensus 186 eal~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 186 EAMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 33344688999999988888754
No 67
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.42 E-value=7.2e-12 Score=138.50 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=138.2
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. .+++++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999876643211 001111112221 25789999
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.|||.. .++ -++++.++.+++++++++. ++||+++.. |+..+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVEN-----------PKV--KAAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccCc-----------HHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence 9965 89999999999863 333 4789999999999998874 445566543 2222221110 1
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|....+- . -||-|.. +++++++.+..++..+++ .++.+. +...++.|- +..
T Consensus 449 ~Hf---f~P~~~~~l------V---Evv~g~~---T~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~nR---i~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMPL------V---EVIRGEK---TSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVNR---VLF 504 (715)
T ss_pred Eec---CCcccccce------E---EeeCCCC---CCHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHHH---HHH
Confidence 111 244332221 1 2444432 368999999999999874 566664 355677784 567
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGK 253 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+++||+..+.+.. ++++++..++..
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~ 529 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEK 529 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 8999999998865 999999998764
No 68
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.42 E-value=3.6e-11 Score=120.81 Aligned_cols=256 Identities=16% Similarity=0.101 Sum_probs=151.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||+.+|..|+++ |++|+++.+++. +.+++....+....-+ . ......+++++++ ...+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~-~----~~~~~~~~~~~~~-~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGD-F----HLPPVQAYRSAED-MPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCC-e----eecCceEEcchhh-cCCCC
Confidence 38999999999999999999998 999999999863 4455432222110000 0 0011334455443 67899
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+..+-.+..
T Consensus 75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~ 137 (313)
T PRK06249 75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG 137 (313)
T ss_pred EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence 9999998642 25677788888877776653 34455665666666543210 0000111223445
Q ss_pred ccccccccCCCCeEEEEeCCCcch-----HHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH--------------
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEG-----QKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------- 221 (480)
||...+. ...++.+|..+.. + .+..+.+.++|+.... ......|+....|.|++-|+
T Consensus 138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 5543332 2234567754321 2 3556677888887532 34456799999999999884
Q ss_pred -------HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCC-CCccccCCCCCcccchhhhH--HHHHHHHHH
Q 011654 222 -------FLAQRISSVNAMSALCEATGAD-----VTQVSHAIGKDTRI-GPRFLNSSVGFGGSCFQKDI--LNLVYICEC 286 (480)
Q Consensus 222 -------~~~~~ia~~nE~~~l~~~~Gid-----~~~v~~~~~~~~~~-~~~~~~pg~g~gg~cl~kD~--~~l~~~a~~ 286 (480)
.+.+..+.+.|+..++++.|++ .+++++.+...+.. ++++.+- -.|.-.--|. .++++++++
T Consensus 214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~---~~gr~tEid~i~G~vv~~a~~ 290 (313)
T PRK06249 214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDF---EEGRPLELEAIYANPLAAARA 290 (313)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHH---HCCCcccHHHHhhHHHHHHHH
Confidence 3456667899999999999986 34444444322211 1111100 0111122222 267888999
Q ss_pred cCCc
Q 011654 287 NGLT 290 (480)
Q Consensus 287 ~g~~ 290 (480)
+|++
T Consensus 291 ~Gi~ 294 (313)
T PRK06249 291 AGCA 294 (313)
T ss_pred hCCC
Confidence 9987
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.41 E-value=2.7e-11 Score=123.83 Aligned_cols=178 Identities=18% Similarity=0.193 Sum_probs=114.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+........+ .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999998 899999998877654433211000 01234677777899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc---
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE--- 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe--- 157 (480)
||+|||.. .+.++++++.+ .++++.+|++.+++.....+.+.+.+... .. ++..+|.
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~---~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDL---IR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC---Ce-EEeeCCcCcC
Confidence 99999842 35677888887 47888888887777766655554442221 12 3444663
Q ss_pred -cccccccccccCCC-CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHH
Q 011654 158 -FLAEGTAIQDLFNP-DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAA 219 (480)
Q Consensus 158 -~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~ 219 (480)
+.++..+..+++.. +.++..+ ...+++.++.++++++.++ ..++.++++ ...++.++.
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~--~~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPD--DHTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecC--CCCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHhc
Confidence 33333344444443 3444332 2336788999999999985 456555543 334444443
No 70
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.40 E-value=4.1e-11 Score=117.60 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=123.7
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPK---IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|.||..+|..|.++ | ++|++||+++++.+.+.+.. ++..+++..+++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999987 7 78999999999888776520 2345567777788
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++|+||+|||.. .+.++++.+.+++ +++|+.. +.++ .+.+.+.+.. +.. .+-..|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999742 3577888888776 4555433 2232 2334444331 111 222445
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhh-hHHhHHHHHHHHHHHHHHH
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSK-LAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (480)
.... .+......+.-+ ...+++..+.++.+|+.++ ..++..+...-...= +..+ .-+....++..+..
T Consensus 118 ~~p~------~~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA------LVGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD 186 (267)
T ss_pred CchH------HHcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence 3211 011111222222 2236888999999999985 355555433222222 2112 12233567777788
Q ss_pred HHHHhCCCHHHHHHHhc
Q 011654 236 LCEATGADVTQVSHAIG 252 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~ 252 (480)
.+.+.|++.++..+++.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 187 AGVKLGLPREQARKLAA 203 (267)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88889999988777664
No 71
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.39 E-value=2.1e-10 Score=112.47 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=114.7
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH-HHHhc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV--VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI-EKHVA 77 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~--~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~-~~a~~ 77 (480)
+|+|+|+|+|.||..+|..|.++ |+.|.+ +|++.+..+.-.... + .-+.+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lg-------v----------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELG-------V----------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcC-------c----------ccccccchhhhhcc
Confidence 47999999999999999999998 787755 555544443322210 0 01222333 45577
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC-CCceeEeeCC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~P 156 (480)
.+|+||+|||- ....++++++.++++++++|++.+++.-...+. +++... .. -++..+|
T Consensus 64 ~aD~VivavPi---------------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a----~~~~~~~~~-~~vg~HP 123 (279)
T COG0287 64 EADLVIVAVPI---------------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEA----MEKYLPGDV-RFVGGHP 123 (279)
T ss_pred cCCEEEEeccH---------------HHHHHHHHHhcccCCCCCEEEecccccHHHHHH----HHHhccCCC-eeEecCC
Confidence 89999999984 345788899999999999999765554333333 333322 12 3567788
Q ss_pred ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHHh
Q 011654 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAAN 220 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N 220 (480)
-+..+ +..+++.+..+|+ ++....+.+.++.+.++|+..+ ..++.++++. -..+-.++-
T Consensus 124 M~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~eeHD~~~a~vsh 183 (279)
T COG0287 124 MFGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEEHDRVMAAVSH 183 (279)
T ss_pred CCCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHHHhHHHHHHHH
Confidence 76654 3455666666655 5555445788999999999874 5777777653 333444433
No 72
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.39 E-value=1.7e-11 Score=135.29 Aligned_cols=205 Identities=16% Similarity=0.202 Sum_probs=138.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.....+.. ..+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGV-----LNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999887653321 001111111111 25789999
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++ +++||+||.||+.. .++ -++++.++.+++++++|+. ++|++++.. ++..+..-.. |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~--K~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVEN-----------PKV--KAAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCccc-----------HHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence 9854 89999999999863 233 4789999999999999874 345555443 2222221110 1
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|....+- . -||- +. .+++++++.+.+++..+.+ .++.+.+ ...++.|- +..
T Consensus 449 ~Hf---f~P~~~~~l------v---Evv~-g~--~Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~NR---l~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMPL------V---EVIR-GE--KSSDETIATVVAYASKMGK-TPIVVND-----CPGFFVNR---VLF 504 (714)
T ss_pred Eec---CCCcccCce------E---eecC-CC--CCCHHHHHHHHHHHHHcCC-EEEEeCC-----cccchHHH---HHH
Confidence 111 244333221 1 2443 33 2378999999999999864 4566643 45678884 567
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|...+.+. |++++++..++...
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~ 530 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEKQ 530 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence 899999999875 59999999988643
No 73
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.38 E-value=2.5e-11 Score=134.00 Aligned_cols=204 Identities=18% Similarity=0.142 Sum_probs=135.7
Q ss_pred CcEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH---------hhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT---------QCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~---------~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++ .+ |++|+++|++++.++...... +..++.++. .....+++.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 468999999999999999998 47 999999999998766543210 000111110 00125789999
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCc
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+++ ++++||+||.|||.. .+ .-++++.++.+++++++|+. ++|++++.. ++..+.... .
T Consensus 378 ~~~-~~~~adlViEav~E~-----------l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~---r 437 (699)
T TIGR02440 378 DYR-GFKDVDIVIEAVFED-----------LA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPE---N 437 (699)
T ss_pred ChH-HhccCCEEEEecccc-----------HH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcc---c
Confidence 986 589999999999853 23 34789999999999998874 334555543 222222111 1
Q ss_pred eeEe--eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 150 YQIL--SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 150 ~~v~--~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
|..+ ++|....+- --|| .+.. +++++++.+..++..+.+ .++.+.| ...++.| .+..
T Consensus 438 ~~g~HffnP~~~~~l---------VEvv-~g~~--T~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 496 (699)
T TIGR02440 438 VIGLHYFSPVEKMPL---------VEVI-PHAG--TSEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA 496 (699)
T ss_pred EEEEecCCccccCce---------EEEe-CCCC--CCHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence 1111 234332221 0244 3332 378999999999999874 5566643 4567777 4568
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+++||...+.+ -|++++++..++.
T Consensus 497 ~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 497 PYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 89999998887 4689999999883
No 74
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=3.9e-11 Score=117.85 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=121.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+|+..|.+++ ...+|+++|+++++.+.+.+. -++..+++..+++.+|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHhhC
Confidence 68999999999999999999871 123799999999988876531 0234566777778899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+||| |. .+.++++++.++++++++|| |....=+.+.|++.+.... . + .|.
T Consensus 65 DiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~--v----vR~ 118 (272)
T PRK12491 65 DILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---K--V----IRV 118 (272)
T ss_pred CEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---c--E----EEE
Confidence 99999998 42 35788888988888887776 2233233455665553211 1 1 123
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|-.+..--... ..+..+ +..+++..+.++.||+.++. .+.. +-..-...=-+.-+-=+....++..+...+.+
T Consensus 119 MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~ 192 (272)
T PRK12491 119 MPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVL 192 (272)
T ss_pred CCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 332221111111 122222 22356678899999999853 4433 21110111111111112334455666777888
Q ss_pred hCCCHHHHHHHhc
Q 011654 240 TGADVTQVSHAIG 252 (480)
Q Consensus 240 ~Gid~~~v~~~~~ 252 (480)
.|++.++..+++.
T Consensus 193 ~Gl~~~~A~~l~~ 205 (272)
T PRK12491 193 GGMPRKQAYKFAA 205 (272)
T ss_pred cCCCHHHHHHHHH
Confidence 8998887777654
No 75
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.37 E-value=2.4e-11 Score=134.36 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=136.8
Q ss_pred CcEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEe
Q 011654 1 MVKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFS 69 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t 69 (480)
|.||+|||+|.||..+|..++ .. |++|+++|++++.++...+. ...+.+...+. ...+++++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDK-----QMALISGT 381 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhcEEEe
Confidence 468999999999999999999 76 99999999999876653221 00011111111 12578999
Q ss_pred cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--
Q 011654 70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
++++ ++++||+||.|||.. ++.-++++.++.+++++++++. ++|++++.. |+..+.....
T Consensus 382 ~~~~-~~~~aDlViEav~E~-------------~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~i 444 (708)
T PRK11154 382 TDYR-GFKHADVVIEAVFED-------------LALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVI 444 (708)
T ss_pred CChH-HhccCCEEeeccccc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceE
Confidence 9985 589999999999853 2334889999999999999885 334555543 2222221110
Q ss_pred CCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH
Q 011654 147 EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|..| ++|....+- . -||-| . .+++++.+.+..++..+.+ .++.+.| ...++.| .+.
T Consensus 445 g~Hf---f~P~~~~~l------V---Evv~g-~--~Ts~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~ 500 (708)
T PRK11154 445 GLHY---FSPVEKMPL------V---EVIPH-A--KTSAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RIL 500 (708)
T ss_pred EEec---CCccccCce------E---EEECC-C--CCCHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHH
Confidence 1111 244433321 1 24433 3 2378999999999998864 4555543 4456777 566
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654 227 ISSVNAMSALCEATGADVTQVSHAIG 252 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
.+++||...+.+. |++++++..++.
T Consensus 501 ~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 501 APYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 8999999999886 789999988875
No 76
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.37 E-value=1.6e-11 Score=135.80 Aligned_cols=202 Identities=14% Similarity=0.151 Sum_probs=137.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
|.+|+|||+|.||..+|..++.+ |++|+++|++++.++...+.. ..+.+...+. ...+++.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 407 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL 407 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence 46899999999999999999998 999999999998876643210 0010111111 125789999
Q ss_pred CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654 71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.||+.. .++ -++++.++.+++++++|+. ++||+++.. ++..+..-.. |
T Consensus 408 ~~~~-~~~aDlViEAv~E~-----------l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig 470 (737)
T TIGR02441 408 DYSG-FKNADMVIEAVFED-----------LSL--KHKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG 470 (737)
T ss_pred CHHH-hccCCeehhhcccc-----------HHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence 9964 89999999999863 233 4789999999999999874 445666543 3222221110 1
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|....+- . -||-| . .+++++++.+..++..+.+ .++.+.| ...++-|- +..
T Consensus 471 ~Hf---f~P~~~m~L------v---Evv~g-~--~Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~NR---i~~ 526 (737)
T TIGR02441 471 MHY---FSPVDKMQL------L---EIITH-D--GTSKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTTR---CLG 526 (737)
T ss_pred Eec---cCCcccCce------E---EEeCC-C--CCCHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHHH---HHH
Confidence 111 244333221 1 24433 3 2378999999999999864 4566654 34577774 457
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Q 011654 228 SSVNAMSALCEATGADVTQVSHAI 251 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~ 251 (480)
++++|+..+.+. |++++++..++
T Consensus 527 ~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 527 PMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Confidence 899999999875 78999999986
No 77
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.36 E-value=5.4e-12 Score=116.31 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=99.1
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-----CCCCChH-HHHHhhcCCCEEEecCHHHHh
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-----IYEPGLE-DVVTQCRGRNLFFSTDIEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-----~~e~~l~-~l~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... .....+. +... ...+++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEAD-AALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH-HHHHTEEEESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhh-hhhhhcccccCHHHHh
Confidence 799999999999999999998 99999999999876654321000 0000000 0000 1125789999999865
Q ss_pred ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeE--e
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQI--L 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v--~ 153 (480)
+||+||.|+|.. +..-++.++++.+.+++++++. +.|++++.. +...+.... .|.. .
T Consensus 78 -~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~---R~ig~Hf 137 (180)
T PF02737_consen 78 -DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPE---RFIGMHF 137 (180)
T ss_dssp -TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGG---GEEEEEE
T ss_pred -hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCc---eEEEEec
Confidence 999999999852 3344889999999999999875 334555432 222111110 1111 1
Q ss_pred eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011654 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN 208 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 208 (480)
++|....+- . .|+-| .. +++++++.+..++..+++ .++.+.|
T Consensus 138 ~~P~~~~~l------V---Evv~~-~~--T~~~~~~~~~~~~~~~gk-~pv~v~D 179 (180)
T PF02737_consen 138 FNPPHLMPL------V---EVVPG-PK--TSPETVDRVRALLRSLGK-TPVVVKD 179 (180)
T ss_dssp -SSTTT--E------E---EEEE--TT--S-HHHHHHHHHHHHHTT--EEEEEES
T ss_pred ccccccCce------E---EEeCC-CC--CCHHHHHHHHHHHHHCCC-EEEEecC
Confidence 244433221 1 24444 33 379999999999999863 4555543
No 78
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=3.3e-11 Score=117.69 Aligned_cols=186 Identities=13% Similarity=0.162 Sum_probs=121.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIE---VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+. |+. +.++++++++.+.+.+.. ++.+.+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 7999999999999999999987 643 588999999887766420 124556788887889
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+||| |. .+.++++++. ++++++||. +..+-+.+.+.+.+.... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 2456666652 456787774 445555667777665321 1 22344532
Q ss_pred ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-----HHHHHHHHHHHH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-----FLAQRISSVNAM 233 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~ 233 (480)
.. . .-... ..+.++ . +.++++|+.++ ..+.+.+. |...+. +.+....++.++
T Consensus 119 ~~--a---~~~g~-t~~~~~------~---~~~~~l~~~lG--~~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~ 175 (258)
T PRK06476 119 FV--A---ERKGV-TAIYPP------D---PFVAALFDALG--TAVECDSE------EEYDLLAAASALMATYFGILETA 175 (258)
T ss_pred hh--h---hCCCC-eEecCC------H---HHHHHHHHhcC--CcEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence 11 1 00111 223222 2 47889999985 35545433 222222 444455688899
Q ss_pred HHHHHHhCCCHHHHHHHhc
Q 011654 234 SALCEATGADVTQVSHAIG 252 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~ 252 (480)
..++++.|+|.++..+++.
T Consensus 176 ~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 176 TGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999988888765
No 79
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.31 E-value=1.4e-10 Score=129.75 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=117.2
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++||+|||+|.||.++|..|.++ | ++|++||+++++.+.+.+... ....+++..+++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~ 63 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGV-----------------IDRGEEDLAEAVSG 63 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCC-----------------CCcccCCHHHHhcC
Confidence 36899999999999999999987 6 589999999998877654210 01134566777889
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||. ..+.++++.+.++++++.+|++.+++...+.+.+.+.+.... .. ++..+|..
T Consensus 64 aDvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~r-~~~~hPm~ 125 (735)
T PRK14806 64 ADVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--AG-FVPGHPIA 125 (735)
T ss_pred CCEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--Ce-EEecCCcC
Confidence 9999999984 236788889999888889998888888777777766654321 11 35567754
Q ss_pred cccc----ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh
Q 011654 159 LAEG----TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW 210 (480)
Q Consensus 159 ~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 210 (480)
..++ .+..+++....+++- .....+++..+.++++|+.++ ..++..+..
T Consensus 126 G~~~~g~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~ 178 (735)
T PRK14806 126 GSEKSGVHAANADLFRNHKVILT-PLAETDPAALARVDRLWRAVG--ADVLHMDVA 178 (735)
T ss_pred cCCcchhhhhhhHHhCCCeEEEE-CCCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 3332 122234443334332 223335778899999999985 456665544
No 80
>PLN02256 arogenate dehydrogenase
Probab=99.31 E-value=7.2e-10 Score=110.44 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=106.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
.|+|+|||+|.||..+|..|.+. |++|++||+++.. +...+- ++...++.++++ .++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCC
Confidence 37999999999999999999987 8999999998642 222210 133456777755 479
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHH-HhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||.. .+.++++++ .++++++++|++.+++.....+.+.+.+.. +. -++..+|-.
T Consensus 94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~-~~V~~HPma 154 (304)
T PLN02256 94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EF-DILCTHPMF 154 (304)
T ss_pred CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CC-eEEecCCCC
Confidence 9999999842 356777887 567888998887666544444444444322 11 256678866
Q ss_pred ccccccccccCCCCeEEEEeC---CCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654 159 LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAIQALKDVYAHWVPEDRIITTNLWS 211 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
..+... ..+... .+++... ++.++++..+.++++++.++ .+++.++++.
T Consensus 155 G~e~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 155 GPESGK-GGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCCc-cccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 544221 011111 2323220 02235778899999999984 5777777654
No 81
>PRK07680 late competence protein ComER; Validated
Probab=99.29 E-value=2.9e-10 Score=111.99 Aligned_cols=196 Identities=12% Similarity=0.197 Sum_probs=116.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.+++..|.++ | ++|++||+++++.+.+.+.. .++..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 7999999999999999999987 6 47999999998887765410 13556678877789
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||. ..+.++++++.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 2357788888888888888775542 12345565554321 1122332
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-ChhHHHHhhhH-HhHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-NLWSAELSKLA-ANAFLAQRISSVNAMSA 235 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~-~N~~~~~~ia~~nE~~~ 235 (480)
. ++.+..+. ..++.|.. .+++..+.++++|+.++ ..+... +...+...-.. .=+|....+. .+..
T Consensus 119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G--~~~~i~e~~~~~~~~l~gs~pa~~~~~~~---al~~ 185 (273)
T PRK07680 119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIS--TPLVIEEDITRVSSDIVSCGPAFFSYLLQ---RFID 185 (273)
T ss_pred h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCC--CEEEEChHhcchhhhhccchHHHHHHHHH---HHHH
Confidence 1 11111111 12233321 24567789999999985 344443 11111111000 0112222222 2222
Q ss_pred HHHH-hCCCHHHHHHHhc
Q 011654 236 LCEA-TGADVTQVSHAIG 252 (480)
Q Consensus 236 l~~~-~Gid~~~v~~~~~ 252 (480)
-+.+ .|++.++..+++.
T Consensus 186 ~~~~~~Gl~~~~a~~~~~ 203 (273)
T PRK07680 186 AAVEETNISKEEATTLAS 203 (273)
T ss_pred HHHHhcCCCHHHHHHHHH
Confidence 2334 8999888776653
No 82
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.28 E-value=2.4e-10 Score=114.48 Aligned_cols=195 Identities=15% Similarity=0.167 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEecC--H
Q 011654 12 VGGPTMAVIALKCPKIEVAVVDISVSR-------IAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFSTD--I 72 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~d--~ 72 (480)
||..+|..++.+ |++|+++|++++. ++...+. ...+.+...+. ..++++++++ +
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence 799999999998 9999999999853 2211110 00000111111 1256888765 6
Q ss_pred HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeE
Q 011654 73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQI 152 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
.+++++||+||.|||... +++ +..+.++.+.+++++++. ||.++-....++..+..
T Consensus 74 ~~a~~~aD~ViEav~E~~-----------~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~--------- 129 (314)
T PRK08269 74 ADALADADLVFEAVPEVL-----------DAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAH--------- 129 (314)
T ss_pred HHHhccCCEEEECCcCCH-----------HHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCC---------
Confidence 677899999999998642 333 667888999999998773 44444444455443321
Q ss_pred eeCCccccccccccccCCCCe----E-EEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 153 LSNPEFLAEGTAIQDLFNPDR----V-LIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~----v-viG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
|++..- .++++|+. | |+++.. +++++++++.+++..+++ .++++.+... +....+..
T Consensus 130 ---p~r~~g----~Hf~~Pp~~~~lvEVv~g~~--t~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~ 191 (314)
T PRK08269 130 ---PERFLN----AHWLNPAYLMPLVEVSPSDA--TDPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQA 191 (314)
T ss_pred ---cccEEE----EecCCccccCceEEEeCCCC--CCHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHH
Confidence 221110 12223321 1 345553 378999999999999874 4566665432 24557789
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGKDT 255 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
.+++|...++++.++|++++.+++....
T Consensus 192 ~~l~EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 192 LAMNEAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999987553
No 83
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.25 E-value=1.1e-09 Score=111.27 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=106.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+ |.||..+|..|.+.. +++|+++|++.+ ..+++++++++||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 68999999 999999999999753 899999998410 1235666789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh---CCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV---SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||. +.+.++++++.++ ++++++|++.+++.....+.+ + +.. .. ++..+|-
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcC--CC-EEeeCCC
Confidence 99999884 3457778888876 789999998766553333322 2 222 22 5778887
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAA 219 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~ 219 (480)
+..+.+ +++....+++- +.. ..+..+.++++++.++ ..+..++++. -+++-+++
T Consensus 112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQ 166 (370)
T ss_pred CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHH
Confidence 766543 23444344442 321 3455778999999884 5777777754 34555444
No 84
>PLN02712 arogenate dehydrogenase
Probab=99.24 E-value=3.3e-09 Score=116.16 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=105.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+- ++...+++++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~-------------------Gv~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL-------------------GVSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc-------------------CCeEeCCHHHHHhcCCC
Confidence 7999999999999999999987 8999999998643 222211 1345567777665 589
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||.. .+.++++++.. .++++++|++.+++.....+.+.+.+.. +.+ ++..+|.+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 24566777765 5788999998877763333444443332 222 455777655
Q ss_pred cccc-----cccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654 160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS 211 (480)
Q Consensus 160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+.. ....++.+ ++++++. ...+.++.+.++|..++ .+++.++++.
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~--~~~~~~~~l~~l~~~lG--a~vv~ms~ee 539 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDD--RRVSRCDSFLDIFAREG--CRMVEMSCAE 539 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCc--chHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 4421 11223333 2345431 13455666778999884 5777777664
No 85
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.22 E-value=1.1e-09 Score=109.18 Aligned_cols=209 Identities=22% Similarity=0.217 Sum_probs=140.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|+|.||+.+|..|+++ |++|+++-|++. ++++++....+.+..- ... -....+++ .+....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~-----~~~~~~~~-~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGG-NFT-----TPVVAATD-AEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCC-ccc-----cccccccC-hhhcCCCCE
Confidence 8999999999999999999998 888999888776 8899886554443221 000 01122233 334679999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee-EeeCCcccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ-ILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~-v~~~Pe~~~ 160 (480)
||++|++.. +.++++.+.+.+++.+.|+. -....|..+.+.+...+... =.. +..+-.+-.
T Consensus 71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~i--l~G~~~~~a~~~~ 132 (307)
T COG1893 71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETV--LGGVTTHGAVREG 132 (307)
T ss_pred EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceE--EEEEeeeeeEecC
Confidence 999998642 46889999999998886653 34566777766665554310 011 222334445
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-------------------
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
+|...+.- ...+.+|..... .++..+.+.++|+... -...+..|+....|.|++-|+
T Consensus 133 ~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~-~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~ 208 (307)
T COG1893 133 PGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAG-LEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLEN 208 (307)
T ss_pred CceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCC-CCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcC
Confidence 56554332 124556755321 2367778888887653 233455799999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCC
Q 011654 222 --FLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+.+..+.+.|...++.+.|+
T Consensus 209 ~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 209 PEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHhccC
Confidence 666778899999999999984
No 86
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=2.6e-10 Score=111.06 Aligned_cols=207 Identities=12% Similarity=0.156 Sum_probs=149.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH---hcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH---VAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
+.|+.|||+.||..++.+.+++ |+.|.+|+|..++++.+.+.... ...+.-..++++- ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 5699999999999999999999 99999999999999887643111 0011112333332 456
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC-ccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV-PVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
...|++.|... +++...++++.+++.+|.+||+-... .+.|.++..+.. +.+ -.+|..+-.
T Consensus 71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~-k~G---ilfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELA-KKG---ILFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHH-hcC---cEEEecCcc
Confidence 77888888653 23566789999999999999986433 556777765443 332 123433333
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC----CC--eEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP----ED--RIITTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~----~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
-..+|. +..|.+|.||. +++...++.+|..+.- +. ..++++-+++..+|+++|..-.--+.++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 333343 45567888986 8899999999988641 12 24667888999999999999988999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc
Q 011654 232 AMSALCEA-TGADVTQVSHAIG 252 (480)
Q Consensus 232 E~~~l~~~-~Gid~~~v~~~~~ 252 (480)
|...+... +|++-+++.+++.
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7898888877764
No 87
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.18 E-value=1.2e-09 Score=107.92 Aligned_cols=199 Identities=10% Similarity=0.046 Sum_probs=114.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.++|..|.++ | ++|++|++++ ++.+.+.+. .+....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~-----------------~~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDK-----------------YPTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHH-----------------cCCeEEeCCHHHH
Confidence 78999999999999999999987 6 7899999864 445544331 0123456777777
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch-HHHHHHHHHhcCCCCceeEee
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT-AEAIEKILTHNSREIKYQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+.++|+||+|||. ..+.++++++.++++++++||.. ..|. .+.|++.+... . +
T Consensus 62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS~---~aGi~~~~l~~~~~~~----~--v-- 115 (277)
T PRK06928 62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVSI---AAGVSLDDLLEITPGL----Q--V-- 115 (277)
T ss_pred HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEE---CCCCCHHHHHHHcCCC----C--E--
Confidence 8899999999983 23578888888888878766632 2232 33555554321 1 1
Q ss_pred CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.|..|..+..-- .....+..+ +..+++..+.++.+|+.++. .+.+.. ..-...=-+.-+--+....++..+.
T Consensus 116 --vR~MPN~~~~~g-~g~t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~tal~gsgPA~~~~~~~al~ 187 (277)
T PRK06928 116 --SRLIPSLTSAVG-VGTSLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE-ENMDIASNLTSSSPGFIAAIFEEFA 187 (277)
T ss_pred --EEEeCccHHHHh-hhcEEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch-hhCceeeeeecCHHHHHHHHHHHHH
Confidence 122222111100 011122222 22356778899999999853 444321 1000000011111222233444455
Q ss_pred HHHHHh-CCCHHHHHHHhc
Q 011654 235 ALCEAT-GADVTQVSHAIG 252 (480)
Q Consensus 235 ~l~~~~-Gid~~~v~~~~~ 252 (480)
.-+.+. |++.++..+++.
T Consensus 188 ~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 188 EAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 556666 687776666553
No 88
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.18 E-value=5.3e-10 Score=111.83 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=131.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||+.+|..|++. |++|+++++.+++++++++ +...+...+-.... .... .+.++ ...+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~~-~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETADA-AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCccc-ccccC
Confidence 8999999999999999999998 9999999999889999875 32332221110000 0111 11122 45789
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~ 159 (480)
+||+||++. + +.++++.+.+++.+++.|+. -....+..+.+.+.+.+... -..+++ +-.+.
T Consensus 73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 2 46788899999988886653 34455665666665543210 011222 33444
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH-----------------
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF----------------- 222 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~----------------- 222 (480)
.||...+.-. ..+.+|... .+..+.+.++|....- ...+..|+...-|.|++-|+-
T Consensus 135 ~pg~v~~~~~--g~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGH--GFTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEece--EEEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 5666544322 124467432 2345667777775421 233456899999999998861
Q ss_pred -HHHHHHHHHHHHHHHHHhCCC
Q 011654 223 -LAQRISSVNAMSALCEATGAD 243 (480)
Q Consensus 223 -~~~~ia~~nE~~~l~~~~Gid 243 (480)
......++.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 123457789999999999875
No 89
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.18 E-value=2.6e-09 Score=103.32 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=116.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcC-CCCe-EEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKC-PKIE-VAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~-V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+++ ...+ ++++++ ++++.+.+.+. -++..+++.++++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHVTS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHHhc
Confidence 57999999999999999998761 1123 778887 57777766532 123456788888899
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|+|.. .+.++++++.++++ +++||..+ .+.. +.|.+.+... .. .+-..|.
T Consensus 67 ~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~~---~~l~~~~~~~---~~-v~r~~Pn 123 (245)
T PRK07634 67 VDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIGP---SYLEERLPKG---TP-VAWIMPN 123 (245)
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCCH---HHHHHHcCCC---Ce-EEEECCc
Confidence 99999999852 24677788887766 56665432 2222 3344444321 11 2335664
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHh---HHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAAN---AFLAQRISSVNAMS 234 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N---~~~~~~ia~~nE~~ 234 (480)
...+-. ...+.+..+. ..+++..+.++++|+.++. .+... . .+ ...+.- +--+....++..+.
T Consensus 124 ~a~~v~-----~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~-e--~~-~~~~~a~~gs~pa~~~~~~~a~~ 189 (245)
T PRK07634 124 TAAEIG-----KSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT-E--EE-VHQLTAVTGSAPAFLYYFAESLI 189 (245)
T ss_pred HHHHHh-----cCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC-H--HH-cchHHhhhcchHHHHHHHHHHHH
Confidence 432111 1111222221 2257888999999999853 44442 1 11 111111 11112234555566
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 011654 235 ALCEATGADVTQVSHAIG 252 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~ 252 (480)
..+.+.|++.++..+++.
T Consensus 190 ~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 190 EATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 678888999988777765
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.15 E-value=2.9e-09 Score=103.03 Aligned_cols=199 Identities=19% Similarity=0.240 Sum_probs=122.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||.+|+..|.+++ +..+|++.++++++.+.+.+.- +.. .+++..+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence 689999999999999999999982 1279999999999987555420 111 26777788899
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe 157 (480)
+|+||+||+ |. .+.+++.++.+ ..++++|| |-...-+.+.+.+.+.... -..+.- -|.
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~~~---vvR~MPNt~a 121 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGGLR---VVRVMPNTPA 121 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCCCc---eEEeCCChHH
Confidence 999999997 42 25778888887 67788887 3223333455666665211 011111 112
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+.|. ..+..+. ..+++..+.+.++|+.++ ..+.+..-.---++-+. -.-=+....++..+..-+
T Consensus 122 ~vg~g~---------t~i~~~~--~~~~~~~~~v~~l~~~~G--~v~~v~E~~~da~Tais-GSgPAyv~~~iEal~~ag 187 (266)
T COG0345 122 LVGAGV---------TAISANA--NVSEEDKAFVEALLSAVG--KVVEVEESLMDAVTALS-GSGPAYVFLFIEALADAG 187 (266)
T ss_pred HHcCcc---------eeeecCc--cCCHHHHHHHHHHHHhcC--CeEEechHHhhHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 222221 1222222 225778889999999985 34544310000011111 111122344666777788
Q ss_pred HHhCCCHHHHHHHhc
Q 011654 238 EATGADVTQVSHAIG 252 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~ 252 (480)
.+.|++.++..+++.
T Consensus 188 v~~Gl~~~~A~~l~~ 202 (266)
T COG0345 188 VRLGLPREEARELAA 202 (266)
T ss_pred HHcCCCHHHHHHHHH
Confidence 889999988887664
No 91
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.12 E-value=2.9e-10 Score=93.52 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=68.5
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPK---IEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+|||+|.||.+++..|.++ | ++|+.+ ++++++.+.+.+. ....++. +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKE------------------YGVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHH------------------CTTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHh------------------hccccccCChHHhhc
Confidence 799999999999999999998 8 899955 9999999988752 1233444 7888899
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
++|+||+|||.. .+.++++++ ....++++||.
T Consensus 61 ~advvilav~p~---------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKPQ---------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-GG---------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECHH---------------HHHHHHHHH-hhccCCCEEEE
Confidence 999999999832 246778888 66777888875
No 92
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.11 E-value=3.4e-10 Score=104.17 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=141.2
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-----------CCCCCCChHHHHHhhcCCCEEEe
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-----------LPIYEPGLEDVVTQCRGRNLFFS 69 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-----------~~~~e~~l~~l~~~~~~~~l~~t 69 (480)
|.+|+|||.|.||..+|+.-+.. |++|+++|.|++.+++..++. ..-....+++++... ..+++.+
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~-l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT-LDRIKTS 87 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH-HHHHHHc
Confidence 35799999999999999999988 999999999998766544321 111122345554421 1356778
Q ss_pred cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC--C
Q 011654 70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR--E 147 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++.+++++++|+||.++-. +.|++ +..+++|...+++.+++.. .|.+...+ .+...++.... |
T Consensus 88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~G 152 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAG 152 (298)
T ss_pred CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhce
Confidence 8999999999999999754 34554 6788899998888887652 22222222 23233322211 3
Q ss_pred CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654 148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
..| ++|.... .+. .|+ -+++ ++++++..+..+-..+++ .++-+.| ...++-| .+.+
T Consensus 153 lHF---fNPvPvM------KLv---EVi-r~~~--TS~eTf~~l~~f~k~~gK-ttVackD-----tpGFIVN---RlLi 208 (298)
T KOG2304|consen 153 LHF---FNPVPVM------KLV---EVI-RTDD--TSDETFNALVDFGKAVGK-TTVACKD-----TPGFIVN---RLLI 208 (298)
T ss_pred eec---cCCchhH------HHh---hhh-cCCC--CCHHHHHHHHHHHHHhCC-CceeecC-----CCchhhh---HHHH
Confidence 333 3554322 111 233 3333 368899999998888864 4555544 2346677 4559
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654 228 SSVNAMSALCEATGADVTQVSHAIGKDT 255 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
-+++|..++.++..+..+++..++..+.
T Consensus 209 Pyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 209 PYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 9999999999999999999999998664
No 93
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.10 E-value=7.3e-09 Score=101.29 Aligned_cols=193 Identities=11% Similarity=0.062 Sum_probs=114.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+++..|.+++ ...+++++|+++++. ....+.+..+++.++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 58 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC 58 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence 79999999999999999999862 013599999876531 122345667777899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||. ..+.++++++.++++++.+|.+.+++...+ +...+.... . .+ |.
T Consensus 59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~---~-vv-----r~ 111 (260)
T PTZ00431 59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEA---K-IV-----RV 111 (260)
T ss_pred CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCC---e-EE-----EE
Confidence 999999873 236788888888877655655555555433 333332110 1 11 33
Q ss_pred cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|++... +.+. ..++.. ....+++..+.++++|+.++ ..+.+. -..-...=-+.-+--+....++..+...+.+
T Consensus 112 mPn~p~~-~g~g-~t~i~~-~~~~~~~~~~~v~~l~~~~G--~~~~v~-E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~ 185 (260)
T PTZ00431 112 MPNTPSL-VGQG-SLVFCA-NNNVDSTDKKKVIDIFSACG--IIQEIK-EKDMDIATAISGCGPAYVFLFIESLIDAGVK 185 (260)
T ss_pred CCCchhH-hcce-eEEEEe-CCCCCHHHHHHHHHHHHhCC--cEEEEC-hHHcchhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3433311 1111 122332 22335677889999999985 344442 1111111111111122334455666777888
Q ss_pred hCCCHHHHHHHhc
Q 011654 240 TGADVTQVSHAIG 252 (480)
Q Consensus 240 ~Gid~~~v~~~~~ 252 (480)
.|++.++..+++.
T Consensus 186 ~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 186 NGLNRDVSKNLVL 198 (260)
T ss_pred cCCCHHHHHHHHH
Confidence 8999888877664
No 94
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.08 E-value=2.8e-08 Score=97.03 Aligned_cols=178 Identities=18% Similarity=0.184 Sum_probs=111.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCC
Q 011654 16 TMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGL 95 (480)
Q Consensus 16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~ 95 (480)
+|..|.++++.++|+++|++++..+...+.+. .-...++ .++++++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence 57788888444899999999998877643210 0123344 4568999999999874
Q ss_pred CCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee----CCccccccccccccCCC
Q 011654 96 GAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS----NPEFLAEGTAIQDLFNP 171 (480)
Q Consensus 96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~----~Pe~~~~G~a~~~~~~~ 171 (480)
+.+.++++++.++++++++|++.+++.....+.+.+.+... .. ++.. +||..++..+..+++..
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~---~~-~v~~HPM~G~e~~G~~~a~~~lf~g 123 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEG---VR-FVGGHPMAGPEKSGPEAADADLFEG 123 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSS---GE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc---cc-eeecCCCCCCccccchhhcccccCC
Confidence 35788999999999999999988877666555565555421 11 3444 55666666666777776
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHHhHHHHHHHHHHHHH
Q 011654 172 DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 172 ~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
..+++- +.+.++++.++.+.++++.++ .++..++++ .-+++-+++-.-..+..++++.+
T Consensus 124 ~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~ 183 (258)
T PF02153_consen 124 RNWILC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTL 183 (258)
T ss_dssp SEEEEE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CeEEEe-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666553 434446788999999999884 466666664 34555566555555555555533
No 95
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.06 E-value=6.9e-09 Score=98.81 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=69.6
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-CCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-IYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+||| +|.||.++|..|+++ ||+|+++++++++.+.++..... +...+. ..++.. ++..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~-~~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTG-ADNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEE-eChHHHHhcC
Confidence 8999997 899999999999998 99999999999998877642100 000000 011233 3456678999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||+|||.. .+.++++++.+.+. +++||+.+
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence 9999999852 35667777777665 47676543
No 96
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.98 E-value=2.7e-09 Score=106.51 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=83.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||..+|..++.+ |+ +|+++|++++..+... .++++++... ....++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999987 65 8999999766433111 1122222211 11246888899987 89999
Q ss_pred EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++|...+. ++ ..|++.++++.++|.++.+...+|+ -|.|....-.
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~ 126 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY 126 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence 99999999875421 10 1577889999999999875444333 3567665433
No 97
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.97 E-value=2.6e-08 Score=98.76 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCC
Q 011654 11 YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPT 90 (480)
Q Consensus 11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.||+.+|..|+++ |++|++++++ ++.+.+++.+..+..++.+ . . .....+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~--~--~~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-F--Q--FRPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-E--E--EcccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999998 9999999997 7788888654444322211 0 0 002345566665 67899999999863
Q ss_pred CcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCccccccccccccC
Q 011654 91 KTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPEFLAEGTAIQDLF 169 (480)
Q Consensus 91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~ 169 (480)
.+.++++.+.+++.++++|+. .....|..+.+.+.+.+... -..+.+ +-.+.+||...+.
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~v--~~g~~~~~~~~~~pg~v~~~-- 131 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARRI--LGGVVTHGAVREEPGVVHHA-- 131 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccCE--EEEEEEEeeEEcCCcEEEEe--
Confidence 247788899999988887764 44455666666665543210 011222 2233455644333
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH---------------------HHHHHHH
Q 011654 170 NPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA---------------------FLAQRIS 228 (480)
Q Consensus 170 ~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (480)
...++.+|..+.. .+..+.+.++|..... ......|+....|.|++.|+ .+.+..+
T Consensus 132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 2335677865321 2455667777776432 23456799999999999885 3456667
Q ss_pred HHHHHHHHHHHhCCC
Q 011654 229 SVNAMSALCEATGAD 243 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid 243 (480)
.++|+..++++.|++
T Consensus 209 ~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 209 LMDEVVRVARAEGVD 223 (293)
T ss_pred HHHHHHHHHHhCCCC
Confidence 899999999999975
No 98
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.96 E-value=5.4e-09 Score=96.33 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=132.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCC---------EEEecC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRN---------LFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~---------l~~t~d 71 (480)
-||+|+|.|.+|..+|..||.. ||+|..||+.++.+....+.. ++.+..+-++ ...|+ +..|++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 4899999999999999999998 999999999987655332210 0111111110 11122 346889
Q ss_pred HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccch-HHHHHHHHHhcCCCCc
Q 011654 72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKT-AEAIEKILTHNSREIK 149 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt-~~~l~~~l~~~~~g~~ 149 (480)
+.|+++++=.|-.|||... ++ -+..++++...+.+.+|+-.+ ||+.|+- +..+ ..+ .
T Consensus 78 l~E~vk~Ai~iQEcvpE~L-----------~l--kk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL---~~k-----~ 136 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDL-----------NL--KKQLYKQLDEIADPTTILASSTSTFMPSKFSAGL---INK-----E 136 (313)
T ss_pred HHHHHhhhhhHHhhchHhh-----------HH--HHHHHHHHHHhcCCceEEeccccccChHHHhhhh---hhh-----h
Confidence 9999999999999998632 33 366777787777766655322 3456543 1222 111 1
Q ss_pred eeEeeCCccccccccccccCCC-CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHH
Q 011654 150 YQILSNPEFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
-.++.+|.. |- .+-| ..+| -. +-+++++.++.+.++..++. .++.... |...++-| ..+.+
T Consensus 137 q~lvaHPvN--PP-----yfiPLvElV-Pa--PwTsp~tVdrt~~lM~sigq-~pV~l~r----ei~Gf~ln---riq~A 198 (313)
T KOG2305|consen 137 QCLVAHPVN--PP-----YFIPLVELV-PA--PWTSPDTVDRTRALMRSIGQ-EPVTLKR----EILGFALN---RIQYA 198 (313)
T ss_pred heeEecCCC--CC-----cccchheec-cC--CCCChhHHHHHHHHHHHhCC-CCccccc----ccccceec---cccHH
Confidence 234555531 11 0100 1122 22 23368899999999999874 4454432 34444445 57799
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 229 SVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+||..++....+++..++..+++.+
T Consensus 199 ilne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 199 ILNETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHHHccCcchhhHHHHHhcC
Confidence 99999999999999999999888754
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.96 E-value=1.3e-09 Score=94.04 Aligned_cols=92 Identities=28% Similarity=0.251 Sum_probs=64.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|..++..|.++ ||+|.++ .++++..+.+.... +.. ...++.+.+.++|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence 7999999999999999999998 9999875 67777777666421 112 2235567789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh--CCCCCEEEEecC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV--SNSNKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~ST 128 (480)
+|||+||.. .+.++.++|... .+++++|+-+|.
T Consensus 71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCC
Confidence 999999842 478899999987 788999998874
No 100
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.93 E-value=8.6e-08 Score=95.88 Aligned_cols=151 Identities=9% Similarity=0.046 Sum_probs=94.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|... |++|++++++.++....... .++.. .+.+++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence 5899999999999999999988 99999988775443322211 12333 377888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||.. ....++ +++.+.++++++|+..+.+...... ....+ +.++. ...|. .
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~Vi-~vaPn--~ 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDVI-MVAPK--G 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcEE-EeCCC--C
Confidence 99999842 125666 7788999999988776654433211 11111 23332 33464 3
Q ss_pred ccccccccC----CCCeEE-EEeCCCcchHHHHHHHHHHHhccCC
Q 011654 161 EGTAIQDLF----NPDRVL-IGGRETPEGQKAIQALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~~~~~----~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
||..+...+ ..+.++ +..+ .+.+..+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 333222211 122333 2221 246788899999999863
No 101
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.92 E-value=2.9e-08 Score=91.83 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=98.9
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|+|+|.|.+|.++|.+|++. ||+|+.-.+ .+++.+...+... ..++. .+.+++++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence 89999999999999999999998 999998854 4555555544211 12332 3456778999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc---------------ch-HHHHHHHHHh
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV---------------KT-AEAIEKILTH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---------------gt-~~~l~~~l~~ 143 (480)
|+||++||-+ ++..+++++...+. +++||+ .|+|. ++ ++.+++.+..
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999853 35677788877766 787776 56651 11 2233443333
Q ss_pred cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh
Q 011654 144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL 209 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 209 (480)
...-.-|.-+. ...+..+.. .. ... -+.+.|+ |.++.+.+.+|-+.++ ...+-.++.
T Consensus 125 akVVkAFn~i~-a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L 181 (211)
T COG2085 125 AKVVKAFNTIP-AAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPL 181 (211)
T ss_pred cchhhhhcccC-HHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeecccc
Confidence 21001121111 111211111 11 122 2445566 5889999999999884 344555543
No 102
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.86 E-value=4.4e-07 Score=85.31 Aligned_cols=247 Identities=15% Similarity=0.089 Sum_probs=150.5
Q ss_pred CcEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh
Q 011654 1 MVKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60 (480)
Q Consensus 1 imkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~ 60 (480)
+|||+|.|+|+- |..||..||.+ ||+|++.|.|.+..+. +....
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~dd--------------~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMDD--------------EHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccCH--------------HHHHH
Confidence 699999999964 88999999998 9999999987543211 11111
Q ss_pred hcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH-HHHHH
Q 011654 61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA-EAIEK 139 (480)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~ 139 (480)
+...+.+.++|-.++++++++.++-+ |+.. .-..++++|.++++.|.+|.+..|++|-.. ..|..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFT--PFGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFT--PFGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEec--ccch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 22346788888788899999999995 4432 235788999999999999988888876543 34555
Q ss_pred HHHhcCCCCceeEe-eCCccccccccccccCCCCeEEEEeCCC----cchHHHHHHHHHHHhccCCCCeEEeCChhHHHH
Q 011654 140 ILTHNSREIKYQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAIQALKDVYAHWVPEDRIITTNLWSAEL 214 (480)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.|+-.. .|+.+. ++|. ..||...++. +++|+..+ -.+++..+++.++.++.++ .+++.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~~-----yviagr~t~g~elATeEQi~r~velaes~Gk--~~yv~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHGH-----YVIAGRSTEGKELATEEQIERCVELAESTGK--EVYVLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCce-----EEEeccCCCceeeccHHHHHHHHHHHHhcCC--ceEecCHHHHHH
Confidence 554321 234443 3553 4477654443 45665433 2257788999999999863 555555433333
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhc--CCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654 215 SKLAANAFLAQRISSVNAMSALCEA-TGADVTQVSHAIG--KDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLT 290 (480)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~Gid~~~v~~~~~--~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~ 290 (480)
+.=+.-...+..++.+-+......+ .|+..+.+-+-+- ... + ..+--..|++|-.=.-|+.+|+..++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqT-m--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQT-M--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-H--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 3333334445556666666666553 4555433322111 010 0 1111122345444445777888777765443
No 103
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.86 E-value=7.4e-08 Score=94.21 Aligned_cols=189 Identities=16% Similarity=0.237 Sum_probs=125.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-----eEEEEeCCH-------HHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-----EVAVVDISV-------SRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~-------~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~ 68 (480)
.||+|||.|+||+++|+.+..+..++ +|..|-..+ ...+-+|+. ++.-|.|+.+ .+.++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 48999999999999999998753233 466655432 223334443 3555666643 3567899
Q ss_pred ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cc---cc-hHHHHHHHHHh
Q 011654 69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VP---VK-TAEAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~---~g-t~~~l~~~l~~ 143 (480)
++|+.+++.+||+++..||.. ++..++++|..+++++...|..+. +. +| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 999999999999999999853 357789999999999888776553 22 33 24556777766
Q ss_pred cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhH
Q 011654 144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANA 221 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~ 221 (480)
.. |....++.+|..+.+-.. +.+.- -.||+.+. .+.-..+++||++-. .++ ...|..+.|++.-+.|.
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa~--~~f~e--~tIg~~~~---~~~~~~l~~lf~~p~--FrV~~~~D~~~VEi~GaLKNV 229 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVAN--EKFCE--TTIGYKDK---KEAGILLKKLFRTPY--FRVVVVEDADGVEICGALKNV 229 (372)
T ss_pred Hh-CCCceeecCCchHHHHHh--ccccc--eeEeccch---hhcchHHHHHhCCCc--eEEEEeccchHhHHhhhHHhH
Confidence 54 345668888877665432 22222 23577632 233335888888742 333 44688888888877775
No 104
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.81 E-value=1.1e-07 Score=96.06 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=77.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++++.... ..+.++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999998754211 11234678888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... +...+ ..+.+.+.++++.++|+.|--..=..+.|.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998642 22222 235677889999999987654333445566667653
No 105
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.77 E-value=4.8e-08 Score=97.87 Aligned_cols=119 Identities=25% Similarity=0.319 Sum_probs=79.5
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..++.. |+ +|+++|+++++.+..... +.+.. .......+++.++|++ ++++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~----~~~~~~~~i~~~~d~~-~~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAA----PVEGFDTKITGTNDYE-DIAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhh----hhcCCCcEEEeCCCHH-HHCCC
Confidence 79999999999999999999987 54 999999998865433211 00000 0001124567778885 48999
Q ss_pred cEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+||+++..|..... ++ .-+...++++++.+.++.+++.+|+. |.|....
T Consensus 72 DiVii~~~~p~~~~~---~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~ 125 (307)
T PRK06223 72 DVVVITAGVPRKPGM---SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM 125 (307)
T ss_pred CEEEECCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 999999988764311 00 13456678888888888865544443 5555543
No 106
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.71 E-value=5.2e-08 Score=97.58 Aligned_cols=120 Identities=28% Similarity=0.426 Sum_probs=83.5
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+ |++|..+|..|+.. |+ +|+++|+++ +.+.++....++.+ .+.......++++++++++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence 89999998 99999999999987 55 599999954 34444444333321 1111000124666677665 999
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+|+.+|...+. .+.|+ +.++++.+.|.++.+.+.+|+..++++..|
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 9999999998865421 12455 778888899999887667777766777665
No 107
>PRK07574 formate dehydrogenase; Provisional
Probab=98.69 E-value=2.7e-07 Score=94.59 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=80.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |.+|++||++....+.... .+++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 6899999999999999999887 9999999987532221111 123444678898999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.. +++..+. -++....++++.++|+.+....-..+.|.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99999853 2223332 14567778999999998877666667787777764
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=98.66 E-value=3.3e-07 Score=93.88 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=79.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|..- |.+|++||++....+.... .++....+++++++.||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5899999999999999999876 9999999987432221111 123445688998999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|... ++..+. -+++...++++.++|+.+....-..+.|.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999998532 223332 24577788999999998876655566677777764
No 109
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.66 E-value=1.3e-07 Score=95.63 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=78.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|++.+ |.+|++||+++... ... .+..++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGY-GSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 68999999999999999995432 88999999876432 111 12345678888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+.. ..+.+.++++.++|+.|+...-.++.+...|++.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 22211 3456778999999999988777777777777653
No 110
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.65 E-value=3.3e-07 Score=92.77 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=78.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+++..... .. .+... .++++++++||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 4899999999999999999887 8999999997543211 11 01222 468888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... ++..+. -++....++++.++|+.|+...-..+.|.+.|++.
T Consensus 208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 999998532 122221 23566778999999999987777777788877764
No 111
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.61 E-value=4e-06 Score=83.95 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=89.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. ++..+ +..+++++||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 44444444321 23433 4777789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+|++|||.. .....+.+++.+.++++.+|.+...+... .+...+.+ +.++ +--.|.-
T Consensus 62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i~---~~~~~~~~---~~~V-vrvmPn~-- 118 (314)
T TIGR00465 62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNIH---FVQIVPPK---DVDV-VMVAPKG-- 118 (314)
T ss_pred EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccHh---hccccCCC---CCcE-EEECCCC--
Confidence 999999832 11344566788888888876654444322 22222221 1222 2234532
Q ss_pred ccccc-cc---cCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654 161 EGTAI-QD---LFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~-~~---~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
|+..+ .. -...+.++.-.. ..+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~~--~~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVEQ--DPTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEecC--CCCHHHHHHHHHHHHHcCC
Confidence 22211 00 011122321122 1246778899999999863
No 112
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.57 E-value=9.5e-07 Score=88.51 Aligned_cols=111 Identities=22% Similarity=0.399 Sum_probs=74.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ | .+|.++|+++++.+. +... .++.++ ....+++++ +
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~-~ 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYA-D 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHH-H
Confidence 7999999999999999999998 6 689999999877654 3332 122111 122356765 4
Q ss_pred hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||+|++.|..... ++ ..+.+.+++..+.+.++.+.+.+++. |.|...
T Consensus 65 l~~aDiViita~~~~~~~~---~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~ 121 (308)
T cd05292 65 CKGADVVVITAGANQKPGE---TRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV 121 (308)
T ss_pred hCCCCEEEEccCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 8999999999998765410 10 11344566777777777765554443 445443
No 113
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.57 E-value=3e-07 Score=90.87 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=67.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|+++++.....+.... .++.. .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 4799999999999999999988 9999999875433322221 12333 378899999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecC
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
|++++|++.+ ..++ +.+.+.++++++++..-.
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence 9999996421 2333 568889999998876543
No 114
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.57 E-value=1.8e-07 Score=83.71 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=75.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.+++..|++.+ +++|+++|+++++.+.+.+.... ........+..+.++++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 58999999999999999999872 37899999999988776532000 0000123455666789999
Q ss_pred EEEeccCCCC-cCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||+|+|.+.. .+ +.. +. ...++++.+|++.|++++.+ .+.+.+++.
T Consensus 85 vi~~~~~~~~~~~--------~~~-~~------~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD--------ELP-LP------PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC--------CCC-CC------HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987653 10 000 00 11257899999999987665 555555554
No 115
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.55 E-value=5.6e-07 Score=89.63 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=76.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....++++++++||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 5799999999999999987765 9999999986321 11 0 0113478888899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -++....++++.++|+.|+.++-..+.|.+.|++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 12121 24456668999999999988777778888888764
No 116
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.55 E-value=1e-06 Score=77.92 Aligned_cols=119 Identities=23% Similarity=0.306 Sum_probs=75.9
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|..+|..|..+..+.++.++|+++++.+..... ++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence 89999999 999999999999875567899999998876654421 1111111 1112333334445699999
Q ss_pred EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|+++...|..+. .++ ..+...+++..+.+.++.+.+.+++. |.|....
T Consensus 72 ivvitag~~~~~g---~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~~ 124 (141)
T PF00056_consen 72 IVVITAGVPRKPG---MSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDVM 124 (141)
T ss_dssp EEEETTSTSSSTT---SSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHHH
T ss_pred EEEEecccccccc---ccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHHH
Confidence 9999998775431 111 12334456666777777754444443 5666543
No 117
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.55 E-value=6.3e-07 Score=87.86 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. +....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987511455 557999999888766421 134567888877899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC---CccchHHHHHHHHHhc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST---VPVKTAEAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST---v~~gt~~~l~~~l~~~ 144 (480)
|+|++|+|.. ...+....+. +.|.-+++.|+ ..+...+++.+..++.
T Consensus 63 DvVvi~a~~~---------------~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 63 DLVVECASVN---------------AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred CEEEEcCChH---------------HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 9999997632 1233333333 33444555555 2344445565555554
No 118
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.48 E-value=8.2e-07 Score=88.71 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=76.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCcE
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|+||..+|..|+.+ |. +|+++|+++++.+...- ++.+.... ....+++.++|+++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999987 55 99999999875432221 11111111 01245677778664 899999
Q ss_pred EEEeccCCCCcCCCC-CCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLG-AGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~-~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+|+.+|...+... +...-++..++++++.+.++.+++.+|+. |.|...
T Consensus 70 VIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di 120 (300)
T cd01339 70 VVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV 120 (300)
T ss_pred EEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 999998876542100 00012566677888888888866554543 345443
No 119
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.48 E-value=1e-06 Score=86.52 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=72.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 68999999999999999998632478876 7899999877665421 11234567888788999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
+|++|+|+..+ .+..... ++.|+.|+..|+......+++.+..++.+
T Consensus 70 ~Vvi~tp~~~h---------------~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g 116 (271)
T PRK13302 70 IVVEAAPASVL---------------RAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNG 116 (271)
T ss_pred EEEECCCcHHH---------------HHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcC
Confidence 99999886421 2333333 34566555555433334456666666543
No 120
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.46 E-value=1.1e-06 Score=75.67 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=70.7
Q ss_pred hHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------Cc-cc--cCCCCCcccchhhhHHH
Q 011654 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIG-------PR-FL--NSSVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~-------~~-~~--~pg~g~gg~cl~kD~~~ 279 (480)
+++..+|+++|.+.+.++..+.|...++++.|+|+++++++++..+.-+ ++ ++ .+.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 4688999999999999999999999999999999999999998765211 11 11 35577899999999999
Q ss_pred HHHHHHHcCCchhhhHHHHHH
Q 011654 280 LVYICECNGLTEVANYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.+++.|++ .++.+.+.
T Consensus 81 ~~~~a~~~g~~--~p~~~~~~ 99 (122)
T PF14833_consen 81 ALDLAKEAGVP--LPLGSAAR 99 (122)
T ss_dssp HHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHH
Confidence 99999999998 66665543
No 121
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.44 E-value=6.9e-05 Score=69.87 Aligned_cols=190 Identities=15% Similarity=0.140 Sum_probs=110.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||. |.||..++..|.+. |+.|+ +++||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999988 88875 13689
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.+.++++. .+|++.+++... +.+ .. .+ ++..+|-+.
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~~---~~---~~-~vg~HPMfG- 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FKK---YS---GK-IVSIHPLFG- 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HHH---hc---CC-EEecCCCCC-
Confidence 999998842 2344444442 356665544321 221 11 12 477888764
Q ss_pred ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654 161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|.++..+++. .+++-. +..+++..+.++++++ + ..+..++++. -+++-++ .-+..+...
T Consensus 81 p~~a~~~lf~--~~iv~~--~~~~~~~~~~~~~l~~--G--~~~~~~t~eeHD~~~A~i------------shLpH~ia~ 140 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIN--DISRDNYLNEINEMFR--G--YHFVEMTADEHDLLMSEI------------MVKPYIISM 140 (197)
T ss_pred CCcCcccccc--eEEEEC--CCCCHHHHHHHHHHHc--C--CEEEEeCHHHHHHHHHHH------------HHHHHHHHH
Confidence 5555555552 333322 2336777888999988 2 4677777764 2333332 222221110
Q ss_pred hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHc-CCchhhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 011654 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECN-GLTEVANYWKQVIKVNDYQKNRFVNRIVSSM 318 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l 318 (480)
.-.+. . ..+ .++|| + .+.++|+.. +-+ +.+|......|.+- ..++++++.+
T Consensus 141 al~~~-------~------~~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~ 192 (197)
T PRK06444 141 ILKDI-------K------SDI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERL 192 (197)
T ss_pred HHccC-------C------CCC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHH
Confidence 00010 0 012 12222 3 445566543 334 68999999999886 6667777766
Q ss_pred c
Q 011654 319 F 319 (480)
Q Consensus 319 ~ 319 (480)
+
T Consensus 193 ~ 193 (197)
T PRK06444 193 N 193 (197)
T ss_pred h
Confidence 4
No 122
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.43 E-value=7.9e-07 Score=79.29 Aligned_cols=114 Identities=23% Similarity=0.273 Sum_probs=75.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEE
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|+|+|.||+.+|..|++. |++|+++++.+ +.+.+++....+....-++.+ .......+..+....+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence 78999999999999999997 99999999998 888887643333221100000 00112233323468999999
Q ss_pred EeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHH
Q 011654 84 VSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKIL 141 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l 141 (480)
+||++. + +.++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 998853 2 36788889999988865543 344556656665554
No 123
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.42 E-value=2.8e-06 Score=72.52 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=56.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.+|......+.+..++.++. ++|+++++.+.+.+. -++...+|+++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 68999999999999998888764577765 689999988876532 13447788888776 7
Q ss_pred CcEEEEeccCCC
Q 011654 79 ADIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
.|+|+||+|+..
T Consensus 63 ~D~V~I~tp~~~ 74 (120)
T PF01408_consen 63 VDAVIIATPPSS 74 (120)
T ss_dssp ESEEEEESSGGG
T ss_pred CCEEEEecCCcc
Confidence 899999988643
No 124
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.40 E-value=3.8e-06 Score=84.38 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+..- |.+|++||+ .+...+... ......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~~---------------------~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGVD---------------------GVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhccc---------------------cceecccHHHHHhhCC
Confidence 4799999999999999999887 999999999 333221111 1233467889999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC---CCceeEeeCCc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|++.+|-.. ++..+.. .+....+++|.++|+.+=-+.=..+.|.+.|++... +.| ++-+|
T Consensus 200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD---Vf~~E 263 (324)
T COG0111 200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD---VFEEE 263 (324)
T ss_pred EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec---CCCCC
Confidence 9999988532 2232322 234456889999998775444444557777765421 233 25666
Q ss_pred cccccccccccCCCCeEE
Q 011654 158 FLAEGTAIQDLFNPDRVL 175 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv 175 (480)
-..+++ .++..+.|+
T Consensus 264 Pl~~~~---pL~~~pnV~ 278 (324)
T COG0111 264 PLPADS---PLWDLPNVI 278 (324)
T ss_pred CCCCCC---hhhcCCCeE
Confidence 555553 344444554
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.38 E-value=5.4e-06 Score=89.03 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=77.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+....- .... .+.... ++++.++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 4799999999999999999877 99999999853211 1111 123344 78888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+.. .+....++++.++|+.|..+.-..+.|.+.|++.
T Consensus 198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 9999986422 121221 4566778999999998877666667787777764
No 126
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.37 E-value=4e-06 Score=83.69 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=75.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEE
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|||+|++|.++|..|+.++-..+++++|+++++++.+... +++........++..+++++ ++++||+||
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDiVI 71 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADIVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCEEE
Confidence 689999999999999999872126899999999988777653 22221111112345556665 599999999
Q ss_pred EeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 84 VSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|.++|..... ++ .-+...+++..+.|.++.+++. |++- |.|....
T Consensus 72 itag~p~~~~~---~R~~l~~~n~~i~~~~~~~i~~~~p~~~-viv~-sNP~d~~ 121 (300)
T cd00300 72 ITAGAPRKPGE---TRLDLINRNAPILRSVITNLKKYGPDAI-ILVV-SNPVDIL 121 (300)
T ss_pred EcCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEc-cChHHHH
Confidence 99998865411 11 1123345566667777774444 4432 4565543
No 127
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.36 E-value=6.3e-06 Score=88.52 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+.... +.... .+....++++++++.||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999984211 11111 123445678898999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+.. .+....++++.++|+.|..+.-..+.|.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985321 112221 3445578999999999887666667787777764
No 128
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.35 E-value=6.4e-06 Score=75.82 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=72.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||++....+.... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 4899999999999999999987 9999999998876542221 1233 3588898999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|...... ...| ++....++++.++|+.+--..=..+.|.+.|++.
T Consensus 95 v~~~~plt~~T~-----~li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETR-----GLIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTT-----TSBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccc-----eeee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 999998422111 1222 2345668899999986543333334577777664
No 129
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.35 E-value=4.2e-06 Score=83.84 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=74.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..|+......++.++|+++++.+..... ++..........++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999998874345899999998765543321 111000001124666688886 899999
Q ss_pred EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||++...|.... .++ .-+...+++..+.|.++.+++.+++. |.|..+
T Consensus 75 vvitaG~~~k~g---~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv--sNP~d~ 125 (312)
T cd05293 75 VIVTAGARQNEG---ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVV--SNPVDI 125 (312)
T ss_pred EEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEc--cChHHH
Confidence 999988765431 111 11233456666777777554444443 356554
No 130
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.34 E-value=1.9e-06 Score=86.27 Aligned_cols=107 Identities=7% Similarity=0.085 Sum_probs=73.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||++++... +.. ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 5899999999999999999987 999999998653211 000 01112467888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... ++..+. -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 194 vv~~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNTP-----------ETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCCH-----------HHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 999998532 222222 24566778999999986643333345576777654
No 131
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.34 E-value=9.1e-06 Score=81.40 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=74.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..|+.++..++++++|+++++.+.+... +.+............+.++++ +++||+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~~~~~~~i~~~~~~~-l~~aDI 71 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD--------LEDALAFLPSPVKIKAGDYSD-CKDADI 71 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh--------HHHHhhccCCCeEEEcCCHHH-hCCCCE
Confidence 58999999999999999999882126899999999887766432 221111000111123455554 899999
Q ss_pred EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+|++.|.... .++ .-+...+++..+.+.++.+.+ +|++- |.|..+.
T Consensus 72 VIitag~~~~~g---~~R~dll~~N~~i~~~~~~~i~~~~~~~-~vivv-sNP~d~~ 123 (306)
T cd05291 72 VVITAGAPQKPG---ETRLDLLEKNAKIMKSIVPKIKASGFDG-IFLVA-SNPVDVI 123 (306)
T ss_pred EEEccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe-cChHHHH
Confidence 999998875431 111 112334566666777776644 44332 4566543
No 132
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.30 E-value=2.2e-05 Score=73.58 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=37.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999998 9999999999998887764
No 133
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.26 E-value=8.5e-06 Score=85.21 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=59.7
Q ss_pred cEEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654 2 VKICCIGAGYVGGPTMA--VIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||+|.||.+++. .++. ..+|++|++||+++++.+.+... +...+... ...+++.|+|+++++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~--------~~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL--------AKKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999998776 3431 12488999999999988876542 11222211 124678899999999
Q ss_pred ccCcEEEEeccCCC
Q 011654 77 AEADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||++++...
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998653
No 134
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.25 E-value=5.3e-06 Score=82.17 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=70.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..+|..|... |.+|+++++++++.+.+.+... ......++.+.+.++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~-----------------~~~~~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL-----------------IPFPLNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC-----------------eeecHHHHHHHhccCCE
Confidence 4799999999999999999987 8999999999987665543110 00011345666889999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|+|.+.- -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 9999875310 1234456788999999988776663
No 135
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.24 E-value=8e-06 Score=82.22 Aligned_cols=109 Identities=21% Similarity=0.307 Sum_probs=69.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. |+ +|+++|+++++.+.-.-.. ....... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~--------~~~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDI--------SHSNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHH--------HhhhhccCCCeEEEECCCHH-HhCCC
Confidence 6899999999999999999887 74 8999999998643211000 0000000 012466678885 58999
Q ss_pred cEEEEeccCCCCcCCCCC-----CC----CCChHHHHHHHHHHHhhCCCCCEEE
Q 011654 80 DIVFVSVNTPTKTQGLGA-----GK----AADLTYWESAARMIANVSNSNKIVV 124 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~-----~~----~~d~~~v~~~~~~i~~~l~~~~iVi 124 (480)
|+||++...|... + . ++ ..+...+++.++.+.++.+++.+++
T Consensus 76 DiVI~tag~~~~~-~--~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv 126 (321)
T PTZ00082 76 DVVIVTAGLTKRP-G--KSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIV 126 (321)
T ss_pred CEEEECCCCCCCC-C--CCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999998765432 0 0 00 1134456677777777776553333
No 136
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.23 E-value=7.1e-06 Score=73.03 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=61.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|..|.+.|.+|.+. |.+|++-.+..+ ..+..++ .+++. .+.+|+++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~-------------------~Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKA-------------------DGFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHH-------------------TT-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHH-------------------CCCee-ccHHHHHhhCC
Confidence 5899999999999999999998 999998887655 4444333 23443 46788899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++.+|.. ...++. ++|.+++++|++++...
T Consensus 63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 999998742 224555 78999999999988644
No 137
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.21 E-value=6.1e-05 Score=72.99 Aligned_cols=175 Identities=13% Similarity=0.151 Sum_probs=101.2
Q ss_pred CCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHH
Q 011654 26 KIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTY 105 (480)
Q Consensus 26 G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~ 105 (480)
.++|++++|++++.+.+.+. -+.+.+++..+++.++|+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 024556777777889999999998 52 3
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchH
Q 011654 106 WESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ 185 (480)
Q Consensus 106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~ 185 (480)
+.+++.++.+.+.++++||. ....-+.+.|.+.+.... .+ .|..|..+..- ......+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~ivS--~~agi~~~~l~~~~~~~~-----~i----vR~mPn~~~~~-~~g~t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLIS--IAAGVTLEKLSQLLGGTR-----RV----VRVMPNTPAKV-GAGVTAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEEE--ecCCCCHHHHHHHcCCCC-----eE----EEECCChHHHH-hCCeEEEecCC--CCCH
Confidence 67788888877766777763 333333445555553211 11 12333222111 11112222222 2245
Q ss_pred HHHHHHHHHHhccCCCCeEEeCC--hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654 186 KAIQALKDVYAHWVPEDRIITTN--LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIG 252 (480)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~v~~~~--~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+..+.++++|+.++ ..+.+.. ...+...-=...+| ...++..+..-+.+.|++.++..+++.
T Consensus 122 ~~~~~v~~lf~~~G--~~~~v~E~~~~~~talsgsgPA~---~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 122 EDRALVLALFKAVG--EVVELPEALMDAVTALSGSGPAY---VFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHHHHHHHHHHhCC--CEEEECHHHcchHHhhccCcHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67789999999985 3444421 11111111122233 344555666678888999988887765
No 138
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.20 E-value=9.2e-06 Score=79.57 Aligned_cols=120 Identities=23% Similarity=0.296 Sum_probs=78.6
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 4 ICCIGA-GYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|||+ |.||..+|..|+..+ ...+++++|+++++.+..... ++++.......++++++|+.+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence 689999 999999999999872 227999999998776654431 111111111236778888778899999
Q ss_pred EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...+... + .++ .-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus 73 iVv~t~~~~~~~-g--~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~ 127 (263)
T cd00650 73 VVIITAGVGRKP-G--MGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY 127 (263)
T ss_pred EEEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence 999987655432 1 010 1233456777778888775 4445443 567665443
No 139
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=5.5e-06 Score=81.68 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=57.5
Q ss_pred cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.| .||.|||..|.++ |++|++|++. +.++++.+++||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~---------------------------------t~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSR---------------------------------STDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhcCC
Confidence 479999996 9999999999998 9999999853 125677789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +... .+++|++||+.|+.
T Consensus 205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgin 233 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGIN 233 (301)
T ss_pred EEEEecCChhc--------------ccHh------hccCCcEEEEeccc
Confidence 99999987532 1211 27899999987653
No 140
>PRK15076 alpha-galactosidase; Provisional
Probab=98.16 E-value=1.9e-05 Score=82.62 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=57.9
Q ss_pred CcEEEEEcCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHH
Q 011654 1 MVKICCIGAGYVGGPTMA--VIA--LKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++.+....- +...+... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 689999999999977766 554 223577999999999887743220 11111111 12357889998888
Q ss_pred hccCcEEEEeccCC
Q 011654 76 VAEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998764
No 141
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.15 E-value=4e-05 Score=75.10 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=90.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.+|||||.|.||.-+|..|.++ ||.|+..||.+ .+.+.+.. ..+.+ +++.+.+ +..|
T Consensus 53 l~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y---------------g~~~f---t~lhdlcerhpD 110 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY---------------GSAKF---TLLHDLCERHPD 110 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh---------------ccccc---ccHHHHHhcCCC
Confidence 3799999999999999999999 99999999976 33333210 01122 3344323 6899
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeE---eeCC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQI---LSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v---~~~P 156 (480)
+|+.||.. ..++.+++..... ++.+++++...++..-....+.+.|.+. .|+-+ .++|
T Consensus 111 vvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd---fDIlctHpmfGP 172 (480)
T KOG2380|consen 111 VVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD---FDILCTHPMFGP 172 (480)
T ss_pred EEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc---cceEeecCCcCC
Confidence 99999752 2245666665554 7789999876555322223344555442 23221 2344
Q ss_pred ccccccccccccCCCCeEE----EEeCCCcchHHHHHHHHHHHhccCC
Q 011654 157 EFLAEGTAIQDLFNPDRVL----IGGRETPEGQKAIQALKDVYAHWVP 200 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vv----iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
+...++ ....|-|+ +|- ....++.++.+.++|.....
T Consensus 173 ksvnh~-----wqglpfVydkvRig~--~~~r~ercE~fleIf~cegc 213 (480)
T KOG2380|consen 173 KSVNHE-----WQGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC 213 (480)
T ss_pred CcCCCc-----cccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC
Confidence 432222 11122222 331 12236789999999998753
No 142
>PLN02928 oxidoreductase family protein
Probab=98.15 E-value=2.6e-05 Score=79.38 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=73.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |.+|++||++...-....-+ +.......+.. .. . ...+++++++.||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~---~~-~-~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL---IPNGDVDDLVD---EK-G-GHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc---ccccccccccc---cc-C-cccCHHHHHhhCCE
Confidence 5899999999999999999876 99999999873221110000 00000011100 00 1 13478888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -++....++++.++|+.+--+.=..+.|.+.|++.
T Consensus 230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 11121 13455668999999987643332344566666653
No 143
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.14 E-value=2.7e-05 Score=80.95 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=75.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999985321 00 123345678999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|... ++..+. -++....++++.++|+.|-.+.=..+.|.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999998422 222222 13455668999999998766555566677777654
No 144
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.14 E-value=1.1e-05 Score=82.64 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=74.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+..... .+ ... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~~-------------------~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----EG-------------------DGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----cc-------------------Ccc-ccCHHHHHhhCCE
Confidence 4799999999999999999987 99999999753211 00 111 2468888899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..+. ...+..+. -++....++++.++|+.|..+.-..+.|.+.|++.
T Consensus 171 V~lh~Plt~~g-------~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKEG-------EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCCc-------cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 99999853210 01111221 13455668999999998877666666777777653
No 145
>PLN02602 lactate dehydrogenase
Probab=98.12 E-value=2.7e-05 Score=79.07 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=73.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..|+.+....++.++|+++++.+..... +.........-.++.++++++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998773334899999998765544321 111110000113444467776 899999
Q ss_pred EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||++...|.... .++ .-+...+++..+.|.++.+++.+|+. |.|..+.-
T Consensus 109 VVitAG~~~k~g---~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivv--tNPvdv~t 161 (350)
T PLN02602 109 CIVTAGARQIPG---ESRLNLLQRNVALFRKIIPELAKYSPDTILLIV--SNPVDVLT 161 (350)
T ss_pred EEECCCCCCCcC---CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCchHHHH
Confidence 999987765431 111 11234455666777777655544443 45655543
No 146
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.11 E-value=2.7e-05 Score=77.84 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=72.1
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhc-CCCEEE-ecCHHHHhccCc
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR-GRNLFF-STDIEKHVAEAD 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~-~~~l~~-t~d~~~a~~~aD 80 (480)
||+|||+|.+|.++|..|+.+...-++.++|+++++.+..... +.... ... ..+.+. +.++++ +++||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~-~~~~~~~~~i~~~~y~~-~~~aD 70 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHAT-ALTYSTNTKIRAGDYDD-CADAD 70 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhh-ccCCCCCEEEEECCHHH-hCCCC
Confidence 7999999999999999998873234899999987765433211 00000 000 112222 456654 99999
Q ss_pred EEEEeccCCCCcCCCCCCC------CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 81 IVFVSVNTPTKTQGLGAGK------AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~------~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...|..+. .++ ..+.+.+++....+.++.+.+.+++ -|.|..+.-.
T Consensus 71 ivvitaG~~~kpg---~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv--vsNPvDv~t~ 127 (307)
T cd05290 71 IIVITAGPSIDPG---NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL--ITNPLDIAVY 127 (307)
T ss_pred EEEECCCCCCCCC---CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--ecCcHHHHHH
Confidence 9999988765431 111 1233455666667777765444333 4667665443
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.11 E-value=2.2e-05 Score=78.22 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=69.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||.|.+|.+++..|... |.+|+++|+++++.+...+-.. .....+++.+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 5899999999999999999987 8999999999887665543110 01111345666789999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. ..+...+.++++.+|++.++.+.++
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987421 1234456678899999888776664
No 148
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.10 E-value=7.3e-05 Score=74.99 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=69.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+..... . ..+.. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~~-~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYER-VSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCcee-ecHHHHhhcCCE
Confidence 4799999999999999988765 89999999853210 0 01222 368888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|++++|-... +..+. -++....++++.++|+.+=-+.=..+.|.+.|++
T Consensus 200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9999984321 11111 1234456899999998664333334557677765
No 149
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.08 E-value=1.7e-05 Score=79.88 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=72.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. | .++.++|+++++.+...-.. ....... ...+++.++|++ ++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence 6999999999999999999887 6 68999999987644221100 0000000 012456667887 68999
Q ss_pred cEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||++...|.... .++ ..+...+++..+.+.++.++..+++. |.|...
T Consensus 75 DiVVitag~~~~~g---~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di 127 (319)
T PTZ00117 75 DVVVITAGVQRKEE---MTREDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC 127 (319)
T ss_pred CEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence 99999996543220 000 11224456777788888755544443 455543
No 150
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.06 E-value=6.8e-05 Score=75.57 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=71.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+...+ |.+|.+||+....-. ... .+.+. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sDv 203 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESDF 203 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCCE
Confidence 57999999999999999886223 889999997532110 000 01233 378888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. ++..+. -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 204 v~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 204 VCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998532 222222 13455668999999986643333345577777654
No 151
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.05 E-value=9e-05 Score=74.46 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=74.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|.++.. + |.+|..||+.+. -+.-.. .+.++.. +++.++.||+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~-F-gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKG-F-GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhc-C-CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 589999999999999999994 4 899999999864 111111 2245555 8888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+.+|-. +++..+.. ....+.++++.++|+.+=-+.=..+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99998853 23333322 3456678999999986643333345566777664
No 152
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.04 E-value=4.1e-05 Score=76.91 Aligned_cols=115 Identities=20% Similarity=0.308 Sum_probs=70.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.. |. ++.++|+++++.+..... +..... .. .+.+. +++++ ++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~-~~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYS-DCKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHH-HhCC
Confidence 5899999999999999999887 55 899999998876554421 111100 00 12222 45555 4899
Q ss_pred CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+||++...|..+. .++ ..+...+++.++.+.++.+.+.+++. |.|..+.
T Consensus 74 adivIitag~~~k~g---~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv--sNP~d~~ 128 (315)
T PRK00066 74 ADLVVITAGAPQKPG---ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA--SNPVDIL 128 (315)
T ss_pred CCEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc--cCcHHHH
Confidence 999999988765431 111 11233455666667666654444332 4565543
No 153
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.02 E-value=4.7e-05 Score=75.47 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=74.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..|.....+.++.++|+++++.+..... +.....-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D--------L~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD--------LSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc--------hhhcchhccCceEEecCCChhh-hcCCC
Confidence 79999999999999999997765566999999985443321111 11110000 0122223234655 89999
Q ss_pred EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+|+..-|..+. .++ .-+.+.+++..+++.++.+++.++| -|.|..+.-.
T Consensus 72 iVvitAG~prKpG---mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty 126 (313)
T COG0039 72 IVVITAGVPRKPG---MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTY 126 (313)
T ss_pred EEEEeCCCCCCCC---CCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHH
Confidence 9999997776441 111 2234556666777777777444444 4778776544
No 154
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.99 E-value=2.8e-05 Score=78.16 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=56.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.||..++..+....+..+|++|+|++++.+.+.+.. .+ ....+....++++++.+||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999987765323689999999999988876420 00 01135667888888999999
Q ss_pred EEEeccCC
Q 011654 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|++.+
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98887643
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.97 E-value=3.7e-05 Score=77.61 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=70.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..|....+..+|.+||+++++.+.+.+.. .+. .-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~~-g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SDY-EVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hhh-CCcEEEeCCHHHHhccCCE
Confidence 479999999999998887766444679999999999988776420 000 1135678899999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. + ..+ ...+++|+.|...++..|+.
T Consensus 196 VitaT~s~~-P-------~~~-----------~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 196 LVTTTPSRK-P-------VVK-----------ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred EEEecCCCC-c-------Eec-----------HHHcCCCCEEEecCCCCccc
Confidence 999987531 1 011 23468899887655555543
No 156
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.95 E-value=3.8e-05 Score=78.56 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=71.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..|..- |.+|++||+.... .+ .... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 5899999999999999999877 9999999964210 01 0011 2468888899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..+ + ...+..+. -++....+++++++|+.|=-+.=..+.|.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999884321 0 01111111 13455668999999987644433445566666653
No 157
>PLN02306 hydroxypyruvate reductase
Probab=97.91 E-value=0.00026 Score=72.93 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=72.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+.+.+ |.+|++||+.... .+...... ..++...-. .....+...+++++++.||
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~~~~~L~ell~~sD 238 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAY----GQFLKANGE--QPVTWKRASSMEEVLREAD 238 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhh----ccccccccc--ccccccccCCHHHHHhhCC
Confidence 47999999999999999986433 8999999987532 11110000 000000000 0001233468899999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
+|++++|-.. ++..+.. .+....++++.++|+.+--+.=..+.|.+.|++
T Consensus 239 iV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 239 VISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred EEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 9999988421 2222221 345566899999998663322233456666665
No 158
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.91 E-value=6.6e-05 Score=76.64 Aligned_cols=135 Identities=18% Similarity=0.103 Sum_probs=84.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecCHHHHhc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STDIEKHVA 77 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~~ 77 (480)
||||.|||+|.+|.+.|..|+.+ | .+|++.||+.++++++...... .++. -.+.+ ...+.++++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~----~v~~-------~~vD~~d~~al~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGG----KVEA-------LQVDAADVDALVALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccc----ccee-------EEecccChHHHHHHHh
Confidence 79999999999999999999998 6 8999999999999988653110 0000 00111 123456788
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH----------------HHhh-CCCCCEEEEecCCccchHHHHHHH
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------------IANV-SNSNKIVVEKSTVPVKTAEAIEKI 140 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------------i~~~-l~~~~iVi~~STv~~gt~~~l~~~ 140 (480)
+.|+||-|.|-+. +.+.++++++. +.+. -+.|.+++....+.||.+-.+...
T Consensus 68 ~~d~VIn~~p~~~-----------~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~ 136 (389)
T COG1748 68 DFDLVINAAPPFV-----------DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAY 136 (389)
T ss_pred cCCEEEEeCCchh-----------hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHH
Confidence 9999999998543 33434333322 1111 134666777778888887665433
Q ss_pred H-HhcC-C--CCceeEeeCCccc
Q 011654 141 L-THNS-R--EIKYQILSNPEFL 159 (480)
Q Consensus 141 l-~~~~-~--g~~~~v~~~Pe~~ 159 (480)
. ++.. . ..+..++..|++.
T Consensus 137 a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 137 AAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHhhccccEEEEEEecCCCCC
Confidence 3 2222 1 2344555566544
No 159
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.90 E-value=0.00011 Score=63.54 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|++++.. ...++.++... ...++.+++++++.+..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~----------~g~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAK----------VGKDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTT----------TTSBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCccc----------ccchhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999985 488855 578765211 01112222110 123456789999988899
Q ss_pred cEEEEec
Q 011654 80 DIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|++|-..
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
No 160
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.89 E-value=0.00012 Score=73.47 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=69.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. ... ..++++.++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 4899999999999999988765 8999999974310 00 001 1367888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. ++..+. -++....++++.++|+.+=-..=..+.|.+.|++.
T Consensus 201 v~l~~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTE-----------TTQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCCh-----------HHhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998422 111121 13445568999999986643333345577777653
No 161
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=3.8e-05 Score=75.92 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=55.5
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD-ISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|+||| .|.||.|||..|.++ |++|++|+ ++ .+++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT----------------------------------~~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRT----------------------------------RDLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCC----------------------------------CCHHHHHhcC
Confidence 4799999 999999999999998 99999996 32 1345667899
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|++.+.. +.+ .++++|++||+.++
T Consensus 203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence 999999987521 122 12788999997654
No 162
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.82 E-value=0.00011 Score=71.82 Aligned_cols=67 Identities=24% Similarity=0.402 Sum_probs=49.6
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+ |.||..++..+.+. +++++.+ +|+++++.... . ..++..++|+++.+++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------------------~~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------------------ALGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------------------CCCccccCCHHHhccC
Confidence 689999998 99999999888764 4778665 88887654322 0 0124456788887778
Q ss_pred CcEEEEecc
Q 011654 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998864
No 163
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.81 E-value=0.00024 Score=71.53 Aligned_cols=102 Identities=8% Similarity=0.102 Sum_probs=69.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+... .. ... ..++++.++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 4799999999999999998765 899999997521 00 011 1367888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. ++..+. -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998432 112121 13345568899999986643333345576777653
No 164
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.80 E-value=0.00012 Score=73.44 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=53.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|...+ +.+|+++|+++++.+.+.+.. .......++..+++.++|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL----------------GGNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc----------------CCeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998752 478999999999887766421 0111112345566789999
Q ss_pred EEEeccCC
Q 011654 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
No 165
>PRK05442 malate dehydrogenase; Provisional
Probab=97.79 E-value=0.00018 Score=72.45 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=71.4
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKI-----EVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI 72 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~ 72 (480)
++||+|||+ |.+|.++|..|+...--- ++.++|++++ +.+...- ++........ .+.+.+++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~~-~~~~i~~~~ 74 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPLL-AGVVITDDP 74 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhhc-CCcEEecCh
Confidence 369999998 999999999888651112 7999999643 2221111 1111110001 123444454
Q ss_pred HHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 73 EKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+.+++||+||++-..|.... .++ ..+.+.+++..+.|.++.+++.++++-| .|....-.
T Consensus 75 y~~~~daDiVVitaG~~~k~g---~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~t~ 138 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPG---MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPANTNAL 138 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-CchHHHHH
Confidence 456999999999987664331 111 1123445666677777775556555444 66655433
No 166
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.79 E-value=0.00024 Score=71.03 Aligned_cols=114 Identities=20% Similarity=0.284 Sum_probs=69.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-c--CHHHHhc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-T--DIEKHVA 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~--d~~~a~~ 77 (480)
|||+|||+ |.+|.++|..|+.+....++.++|++ +. +|.. -++......-.++.+ . |+.++++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a----~g~a-------lDL~~~~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT----PGVA-------ADLSHINTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc----ceee-------hHhHhCCCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999877222589999998 21 1210 011110011235532 2 3345599
Q ss_pred cCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||++...|..+. .++ ..+.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus 68 daDivvitaG~~~k~g---~tR~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv 122 (310)
T cd01337 68 GADVVVIPAGVPRKPG---MTRDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNS 122 (310)
T ss_pred CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhh
Confidence 9999999998876441 111 1234455666677777755 444433 3567655
No 167
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.77 E-value=0.0002 Score=72.07 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=71.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecC
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKI-------EVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d 71 (480)
.||+|||+ |.+|.++|..|... +. ++.++|+++ ++.+..... +..... ....+.+.+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~-~~~~~~~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAME--------LEDCAF-PLLAGVVATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHH--------Hhhccc-cccCCcEEecC
Confidence 59999998 99999999999876 43 899999964 222221110 000000 00012334344
Q ss_pred HHHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 72 IEKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
..+++++||+||++-..|..+. .++ ..+.+.+++...+|.++.+++.++++- |.|....-
T Consensus 73 ~~~~~~daDvVVitAG~~~k~g---~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t 136 (323)
T TIGR01759 73 PEEAFKDVDAALLVGAFPRKPG---MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNA 136 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHH
Confidence 3455999999999988765431 111 112445667777888887745555443 46765543
No 168
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=0.00014 Score=71.35 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=63.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+. ++.++.+ ++++.. .+...+. + ..+...++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~~-~~~~~~~------------~----~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEHS-IDAVRRA------------L----GEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCCC-HHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence 79999999999999999999875 4566554 343221 1111110 0 01345678887753568
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHHhc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~~~ 144 (480)
|+|++|.|++. ..+.....+..|.-|+..|+. .....+.|.+..++.
T Consensus 63 DvVve~t~~~~------------------~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 63 DLVVECAGHAA------------------LKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred CEEEECCCHHH------------------HHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 99999977431 122233334455656655543 233344555555554
No 169
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.76 E-value=0.00023 Score=71.63 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKI-----EVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~ 73 (480)
+||+|||+ |.+|.++|..|+..+..- ++.++|++++. .+...-. +....... ..+.+.+++..
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~~-~~~~~i~~~~~ 73 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME--------LEDCAFPL-LAEIVITDDPN 73 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh--------hhhccccc-cCceEEecCcH
Confidence 69999999 999999999998762122 79999995432 2211110 10000000 01234444444
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+.+++||+||++-..|..+. .++ ..+.+.+++....|.++.+++.++++- |.|....
T Consensus 74 ~~~~daDivvitaG~~~k~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPG---MERADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence 55999999999988765431 111 112444666677777777544555443 4666543
No 170
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.75 E-value=0.00035 Score=68.52 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=48.0
Q ss_pred CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDIS-VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|+| +|.||..++..+... +++++.+ +|+. ++.... .+.++.. ....++.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 68999999 699999999999875 5888665 7743 322100 0111100 00113567788887545
Q ss_pred cCcEEEEecc
Q 011654 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
.+|+|+.|++
T Consensus 68 ~~DvVIdfT~ 77 (266)
T TIGR00036 68 DPDVLIDFTT 77 (266)
T ss_pred CCCEEEECCC
Confidence 6899999975
No 171
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=7.2e-05 Score=73.32 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=56.6
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||. |.||.|||..|.++ |++|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999998 9999998310 235677789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +.. ..+++|++||+.|+.
T Consensus 204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgin 232 (284)
T PRK14179 204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMN 232 (284)
T ss_pred EEEEecCcccc--------------CCH------HHccCCcEEEEecce
Confidence 99999987632 111 227899999986643
No 172
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.74 E-value=0.00025 Score=66.06 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=68.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||++||||.+|..+...+.+.-.++ -|.+||++.+++..+.+.. +-+.++++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999999998877521123 4889999999988776531 1123477888789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHH
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILT 142 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~ 142 (480)
+++.|-. + .++++. ..+.|+.|.-+++.|+- +++..+++....+
T Consensus 63 lvVEaAS-~--------------~Av~e~---~~~~L~~g~d~iV~SVGALad~~l~erl~~lak 109 (255)
T COG1712 63 LVVEAAS-P--------------EAVREY---VPKILKAGIDVIVMSVGALADEGLRERLRELAK 109 (255)
T ss_pred eeeeeCC-H--------------HHHHHH---hHHHHhcCCCEEEEechhccChHHHHHHHHHHh
Confidence 9999943 1 223332 33445555545555653 5555555544333
No 173
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.74 E-value=0.00019 Score=70.60 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=71.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... . .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~------------~--~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQ------------R--YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHh------------h--cCceEEechhhhcccCccE
Confidence 4799999999999999999988 8999999999988877654210 0 0112222211122357999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||-|+|.....+ .+-..+ -...++++.+|++.++.|+.| .+.+..++.
T Consensus 182 vInatp~gm~~~-------~~~~~~------~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~ 229 (270)
T TIGR00507 182 IINATSAGMSGN-------IDEPPV------PAEKLKEGMVVYDMVYNPGET--PFLAEAKSL 229 (270)
T ss_pred EEECCCCCCCCC-------CCCCCC------CHHHcCCCCEEEEeccCCCCC--HHHHHHHHC
Confidence 999988643210 000000 013367788999999988877 344444443
No 174
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.74 E-value=9.3e-05 Score=67.05 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=74.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+++|+. .....+++.|.++|++|.+||.....-+...+ .+...++
T Consensus 2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----------------------AGAEVAD 49 (163)
T ss_dssp BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----------------------TTEEEES
T ss_pred CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----------------------hhhhhhh
Confidence 489999984 58999999999999999999976433222221 3467889
Q ss_pred CHHHhcccccEEEEEecccc-cccccHHH--HHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654 405 DAYQAAKDAHGVCILTEWDE-FKTLDYQK--IFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~h~~-~~~~~~~~--~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
|+.++++++|+|++++.+++ .+++ +.. +...+++..+|||+..+-+.. ++++.|+.|.--
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 99999999999999988844 4431 112 667777778999999887643 344678888654
No 175
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.70 E-value=0.00054 Score=61.42 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=57.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRI-AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|-|.+|..+|..|... |.+|+++|+||-+. ++... +++. .+.++++..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~d--------------------Gf~v-~~~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMD--------------------GFEV-MTLEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHT--------------------T-EE-E-HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhc--------------------CcEe-cCHHHHHhhCC
Confidence 4789999999999999999988 99999999999643 33333 3444 35788899999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
++|.++....- .+ .+..+.++++.++.+.+..+.
T Consensus 81 i~vtaTG~~~v---------i~--------~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 81 IFVTATGNKDV---------IT--------GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp EEEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTT
T ss_pred EEEECCCCccc---------cC--------HHHHHHhcCCeEEeccCcCce
Confidence 99998664210 11 233445888998876555443
No 176
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.68 E-value=0.00057 Score=70.59 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... ++.+ .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence 4799999999999999999887 89999999999765433321 2222 245677889999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCCc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~ 130 (480)
||.+++++ .+++ .....++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99987642 2232 3556788999988765443
No 177
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.62 E-value=0.00035 Score=64.27 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=74.7
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|+. +-+..+++.|..-|.+|.+|||..........+
T Consensus 31 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---------------------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG----------RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---------------------- 78 (178)
T ss_dssp BS-STTSEEEEESTS----------HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred ccccCCCEEEEEEEc----------CCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence 457899999999974 478999999999999999999999876522221
Q ss_pred ceeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ ...++++.++.+|+|+++.+- ++-+. ++ .+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~-~~~l~~mk~ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLIN-AEFLAKMKPGAVLVNVARGELVDEDALL 138 (178)
T ss_dssp TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS-HHHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred cc-eeeehhhhcchhhhhhhhhccccccceeee-eeeeeccccceEEEeccchhhhhhhHHH
Confidence 23 345899999999999999885 44444 45 455678998889999865 67765443
No 178
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.61 E-value=0.00042 Score=72.02 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=64.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... ++.. .+++++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999987 89999999998775433221 1222 356777889999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCC
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv 129 (480)
||.|++++ .+++ .....++++.++++.+..
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 99997542 2232 456678899988876544
No 179
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.60 E-value=0.00039 Score=70.23 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=68.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+.+.+.. ... ....+...+++++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI-----------QSK-FNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----------HHh-cCCcEEEeCCHHHHHhcCCE
Confidence 479999999999988887764322358999999999988776420 000 01134556888888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|++ +. .+. ..+++|+.|+...+..|+.
T Consensus 196 Vi~aT~s~-~p----------------~i~---~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 196 IVTVTNAK-TP----------------VFS---EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred EEEccCCC-Cc----------------chH---HhcCCCcEEEecCCCCccc
Confidence 99998754 11 111 3468899887555444544
No 180
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.60 E-value=0.0003 Score=73.51 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=63.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||.|.+|..+|..+... |.+|+++|+++.+....... ++.. .+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence 4799999999999999999987 89999999998765322211 1222 356778899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCC
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv 129 (480)
|++|+.++. ++ ......++++.++++.+-.
T Consensus 313 VI~atGt~~------------------iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD------------------IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc------------------ccCHHHHhccCCCcEEEEcCCC
Confidence 999975431 12 2445567899999986543
No 181
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.58 E-value=0.00043 Score=69.29 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=69.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..+....+-.+|.+|++++++.+.+.+... + ....+. .++.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999753223579999999999888764210 0 001122 4778888999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+|++. | + +. ..+++|+.|...++..|+..
T Consensus 192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCcc
Confidence 999987642 1 1 11 12578998876666666543
No 182
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00025 Score=67.74 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=38.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|.|||+|.+|.++|..|.+. ||+|+++|.|+++++...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 8999999999999999999998 9999999999999988544
No 183
>PRK04148 hypothetical protein; Provisional
Probab=97.57 E-value=0.00048 Score=59.83 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.+||+| -|..+|..|++. |++|+++|+|++.++..++....... +.+ +..+++ ..+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 999999999988 99999999999999887754222111 111 233333 3689999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV 123 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV 123 (480)
|.-+=|.| .+...+..+++.....-+|
T Consensus 81 iysirpp~---------------el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 81 IYSIRPPR---------------DLQPFILELAKKINVPLII 107 (134)
T ss_pred EEEeCCCH---------------HHHHHHHHHHHHcCCCEEE
Confidence 99997753 1345555666665544444
No 184
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.57 E-value=0.0078 Score=61.02 Aligned_cols=229 Identities=13% Similarity=0.147 Sum_probs=134.9
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH----HHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA----AWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIE 73 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~ 73 (480)
|.+|-|+|.|.++.-+|..|.+++ ..+|=.+.|...+-+ .++++...+. ..++.-..+...|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~-v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFE-VSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEE-EeecchhhhhhcCeEEhhHhhcCHH
Confidence 678999999999999999999872 346777887655443 3444211111 1111000111234443 345677
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CC-CCCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SN-SNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~-~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
+...+=|.+|+|||+. +..+++++|..- ++ -.++|.+++|. |....++..+.+.+. +..
T Consensus 79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E 139 (429)
T PF10100_consen 79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE 139 (429)
T ss_pred HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence 7667889999999863 235566665432 22 24677766665 333445566665542 222
Q ss_pred Eee-----CCcccccc----ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHh-------
Q 011654 152 ILS-----NPEFLAEG----TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELS------- 215 (480)
Q Consensus 152 v~~-----~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~------- 215 (480)
|++ +-.+...+ +.+..- --.++.+|+... +...+.+++.+|+.+.- ......++..||.-
T Consensus 140 VISFStY~gdTr~~d~~~~~~vlt~~-vK~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVH 215 (429)
T PF10100_consen 140 VISFSTYYGDTRWSDGEQPNRVLTTA-VKKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVH 215 (429)
T ss_pred EEEeecccccceeccCCCcceehhhh-hhceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecC
Confidence 221 22222111 111111 123688897633 45578899999999852 22344567777742
Q ss_pred ------hhHHh-----------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 216 ------KLAAN-----------------------AFLAQRISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 216 ------Kl~~N-----------------------~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++.-| ....-...++.|++.+..++|++.-.+++.++-|
T Consensus 216 pplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 216 PPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred ChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 11111 2344457789999999999999999999999875
No 185
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.55 E-value=0.00062 Score=70.54 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=64.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+..... ++.. .+.++++..+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~-------------------G~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME-------------------GYEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc-------------------CCEE-ccHHHHHcCCCE
Confidence 3799999999999999999887 88999999999887665532 1222 234567789999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecC
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
||.|++++ .++ ......++++.++++.+.
T Consensus 261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 99997642 122 234567888888877653
No 186
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.54 E-value=0.00029 Score=60.46 Aligned_cols=98 Identities=22% Similarity=0.334 Sum_probs=57.9
Q ss_pred EEEEEc-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccC
Q 011654 3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
||+||| .|.+|..++..|... +++++..+ +++.++-+.+......+ .... -..+. .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHL-----KGEV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccc-----cccc------ccccccCChh--hcCC
Confidence 689999 599999999988874 47888776 65543322222110000 0000 00111 2222 2589
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|+||+|+|... ..+.+..+.+.+.+|++||++|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999998532 233344455566889999988754
No 187
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.54 E-value=0.00092 Score=66.85 Aligned_cols=67 Identities=18% Similarity=0.383 Sum_probs=48.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..++..+..+ ++.++++ +|+++ +++. .+ . +...+.+..+.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6899999999999999888865 6889886 69985 4332 11 1 112234555666789
Q ss_pred cEEEEeccCCC
Q 011654 80 DIVFVSVNTPT 90 (480)
Q Consensus 80 DvVii~Vptp~ 90 (480)
|+|++|+|+..
T Consensus 62 DVViIctPs~t 72 (324)
T TIGR01921 62 DVLILCMGSAT 72 (324)
T ss_pred CEEEEcCCCcc
Confidence 99999988643
No 188
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.53 E-value=0.00077 Score=67.73 Aligned_cols=118 Identities=20% Similarity=0.238 Sum_probs=66.0
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH---HHHh
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI---EKHV 76 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~---~~a~ 76 (480)
|+||+|||+ |.+|..+|..|+......++.++|++...-+. .. +......-.+..++|. .+++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a-----~D--------l~~~~~~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVA-----AD--------LSHIDTPAKVTGYADGELWEKAL 74 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccc-----cc--------hhhcCcCceEEEecCCCchHHHh
Confidence 579999999 99999999999865225689999993211100 00 0000001123433331 4569
Q ss_pred ccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++...|.... .++ ..+.+.++++++.+.++- +..+| +.+|.|....-.
T Consensus 75 ~gaDvVVitaG~~~~~~---~tR~dll~~N~~i~~~i~~~i~~~~-~~~iv-iv~SNPvdv~~~ 133 (321)
T PTZ00325 75 RGADLVLICAGVPRKPG---MTRDDLFNTNAPIVRDLVAAVASSA-PKAIV-GIVSNPVNSTVP 133 (321)
T ss_pred CCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEE-EEecCcHHHHHH
Confidence 99999999998765431 000 011122334444454443 33444 446777765433
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00032 Score=70.56 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=77.5
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.- -...+++.|..-|.+|.+|||+...+... ....
T Consensus 139 el~gkTvGIiG~G~----------IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~~ 185 (324)
T COG0111 139 ELAGKTVGIIGLGR----------IGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDGV 185 (324)
T ss_pred cccCCEEEEECCCH----------HHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------cccc
Confidence 56799999999853 67899999999999999999988764211 1223
Q ss_pred eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
...+++++.++.||+|+++++- ++-+. ++.+. ...|++++++|.+.+ ++|.+.+
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~-~a~MK~gailIN~aRG~vVde~aL 243 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEE-LAKMKPGAILINAARGGVVDEDAL 243 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHH-HhhCCCCeEEEECCCcceecHHHH
Confidence 4457899999999999999987 55555 45555 578998889999855 6665543
No 190
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.52 E-value=0.0017 Score=66.78 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=71.9
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcC-CCC----eEEEE--eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKC-PKI----EVAVV--DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+... .+. .+.++ |+++++.+...-. +.+...... .+++++++..
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 999999999998762 121 24444 8888876654421 111110011 2355444444
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+.+++||+||++-..|..+. .++ ..+.+.+++....|.++.+++.+|++- |.|..+.-
T Consensus 116 ~~~kdaDIVVitAG~prkpg---~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t 177 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPG---MERADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNA 177 (387)
T ss_pred HHhCCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHH
Confidence 55999999999988765431 111 112444566667777776566655543 46665543
No 191
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.52 E-value=0.0011 Score=69.30 Aligned_cols=122 Identities=14% Similarity=0.165 Sum_probs=73.4
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALK-------CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+.. .-..+++++|+++++.+...-. +.+...... .++.++++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 99999999999864 1123799999999877654421 111110011 2355444444
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|.... .++ ..+.+.+++..+.|.++..++.+||+- |.|..+.-.
T Consensus 172 e~~kdaDiVVitAG~prkpG---~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGPG---MERADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 55999999999988765431 111 112344566666677744445555443 466655433
No 192
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.52 E-value=0.00058 Score=70.20 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.+.++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999987 889999999999887765321 00000 00001234566789999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|++.|... .+-+ +.++....++++.+|++-+.-+.|.
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCC
Confidence 99998543211 1110 1123334568888888876544444
No 193
>PRK11579 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.0013 Score=67.09 Aligned_cols=68 Identities=21% Similarity=0.378 Sum_probs=48.5
Q ss_pred cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654 2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.+|.. .+..+... ++.+++ ++|+++++... .. +...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~~-----------------~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---DW-----------------PTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---hC-----------------CCCceeCCHHHHhcCC
Confidence 58999999999984 55656553 578876 58999876531 10 12345678888775
Q ss_pred cCcEEEEeccCCC
Q 011654 78 EADIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 64 ~vD~V~I~tp~~~ 76 (346)
T PRK11579 64 NIDLIVIPTPNDT 76 (346)
T ss_pred CCCEEEEcCCcHH
Confidence 5799999988754
No 194
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.49 E-value=0.00069 Score=68.86 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=56.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|+|+|.||..++..+..+ +++++++ .|.+++..+.+.+. ..+.+.+ ..+.........+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 68999999999999999988865 6788776 57677666655431 1222111 0000000012346777778777788
Q ss_pred CcEEEEeccC
Q 011654 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999764
No 195
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.49 E-value=0.00032 Score=61.47 Aligned_cols=72 Identities=25% Similarity=0.309 Sum_probs=54.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCC--EEEecCHHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRN--LFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~--l~~t~d~~~a~~~ 78 (480)
.++.|||+|-+|.+++..|+.. |.+ |++++|+.++.+.+.+.. .... ....++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence 4799999999999999999998 665 999999999998887521 0011 2334556666889
Q ss_pred CcEEEEeccCCC
Q 011654 79 ADIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
+|+||.|+|.+.
T Consensus 76 ~DivI~aT~~~~ 87 (135)
T PF01488_consen 76 ADIVINATPSGM 87 (135)
T ss_dssp ESEEEE-SSTTS
T ss_pred CCeEEEecCCCC
Confidence 999999988653
No 196
>PLN02494 adenosylhomocysteinase
Probab=97.49 E-value=0.00058 Score=71.28 Aligned_cols=87 Identities=21% Similarity=0.130 Sum_probs=63.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA-AWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~-~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+.. ....| +.+ .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999876 899999999987643 32322 222 24667788999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.|.++.. -+.......++++.++++.+-
T Consensus 312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCC
Confidence 9998765421 012445567899999988765
No 197
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.49 E-value=0.00057 Score=69.19 Aligned_cols=93 Identities=24% Similarity=0.277 Sum_probs=62.1
Q ss_pred CcEEEEEcCChhH-HHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 1 MVKICCIGAGYVG-GPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 1 imkI~VIGlG~~G-~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
++||+|||+|.++ ...+..+... ++ .-|-++|+++++.+.+.+.. +.-...+|+++.++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 4799999999554 5677777775 12 23566799999988777531 11146678888776
Q ss_pred c--CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 78 E--ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 78 ~--aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+ .|+|+||+|+..+. .- +...+..|+-|+++--+
T Consensus 65 ~~~iD~V~Iatp~~~H~--------------e~----~~~AL~aGkhVl~EKPl 100 (342)
T COG0673 65 DPDIDAVYIATPNALHA--------------EL----ALAALEAGKHVLCEKPL 100 (342)
T ss_pred CCCCCEEEEcCCChhhH--------------HH----HHHHHhcCCEEEEcCCC
Confidence 4 69999999876542 11 23345567778777543
No 198
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.49 E-value=0.00024 Score=73.24 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=65.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA------VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
++|+|||+|.+|...|..|... |++|+ ++|.+.+..+...+. ++.+ .+++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999999887 89988 455444433333221 2333 467888
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++.||+|++.+|... -..+.+++.++++++.++..+-
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence 999999999987431 1345588999999999887643
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.47 E-value=0.0012 Score=65.96 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=71.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++.-.+=.+|.+|++++++.+++.+. +-.. ....+...+++++++.+||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~-----------~~~~-~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAER-----------FSKE-FGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH-----------HHHh-cCCcEEEeCCHHHHHhcCCE
Confidence 47999999999999999888754446899999999998887642 0000 01246778899999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. ...+++|+.|....+..|+.
T Consensus 186 V~taT~s~~----------P----~~~-----~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 186 ITSITNSDT----------P----IFN-----RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCceEEecCCCCCCc
Confidence 999977531 1 111 13567888776555555544
No 200
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.46 E-value=0.001 Score=66.62 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=68.3
Q ss_pred EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ec--CHHHHhcc
Q 011654 3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-ST--DIEKHVAE 78 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~--d~~~a~~~ 78 (480)
||+|||+ |.+|.++|..|+.+.-..++.++|+++. .|.. -++......-+++. +. ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a------~g~a-------~DL~~~~~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA------AGVA-------ADLSHIPTAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC------cEEE-------chhhcCCcCceEEEecCCCchHHHcCC
Confidence 7999999 9999999999988732348999999861 1210 00100000113443 22 23456999
Q ss_pred CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||++...|..+. .++ ..+.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus 68 aDivvitaG~~~~~g---~~R~dll~~N~~I~~~i~~~i~~~~p-~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKPG---MTRDDLFNVNAGIVKDLVAAVAESCP-KAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCCC---ccHHHHHHHhHHHHHHHHHHHHHhCC-CeEEEE-ecCchhh
Confidence 999999998765431 111 2234456666677777754 444433 3567665
No 201
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.45 E-value=0.00092 Score=76.39 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=55.0
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIE-------------VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF 67 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~ 67 (480)
+.||+|||+|.||.+.|..|++. ++.+ |++.|++++..+.+.++.. +. ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence 35899999999999999999875 3545 9999999998888776421 10 0122
Q ss_pred E-ecCHHHH---hccCcEEEEeccCCCC
Q 011654 68 F-STDIEKH---VAEADIVFVSVNTPTK 91 (480)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~Vptp~~ 91 (480)
. .+|.++. ++++|+|++|+|+..+
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 2 3455443 3679999999997654
No 202
>PRK05086 malate dehydrogenase; Provisional
Probab=97.44 E-value=0.0012 Score=66.25 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred cEEEEEcC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEE--ecCHHHHh
Q 011654 2 VKICCIGA-GYVGGPTMAVIAL-KCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFF--STDIEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~ 76 (480)
|||+|||+ |.+|..+|..|.. ..-+++++++|+++.. .+. ..+.+.. ..-.++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence 89999999 9999999988854 2225789999997542 110 0110000 0012222 35655668
Q ss_pred ccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+++|+||+|...+.... .+ +.| .+.+++.++.+.++. ++.+|+ ..|.|..+.-
T Consensus 68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t 125 (312)
T PRK05086 68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTV 125 (312)
T ss_pred CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHH
Confidence 99999999998865431 00 111 123444555555553 344444 4677876543
No 203
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.44 E-value=0.00058 Score=68.83 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCP-----KIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+..+- .+++.++|+++ ++.+.... ++.+..... ....+.+++..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~-~~~~~i~~~~~ 71 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPL-LKGVVITTDPE 71 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhcccc-cCCcEEecChH
Confidence 38999999 9999999999987511 12599999987 43222111 111111000 01234444555
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+++++||+||++-..|..+. .++ ..+.+.+++....|.++..++.+++.- |.|....
T Consensus 72 ~~~~~aDiVVitAG~~~~~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPG---MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcC---CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 67999999999988765431 111 113344566667777776444544443 4565543
No 204
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0014 Score=65.78 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=84.6
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
.++|||+|..+......+..-.+.-+|.+|+++++..+++.+. +-.. ....+..+++.++++++||+|
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~-----------l~~~-~~~~v~a~~s~~~av~~aDiI 199 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR-----------LRKR-GGEAVGAADSAEEAVEGADIV 199 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH-----------HHhh-cCccceeccCHHHHhhcCCEE
Confidence 5899999999999999998866667899999999998887742 0000 001256788999999999999
Q ss_pred EEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+.|+|+.. |-+ -...+++|+.|...++-.|+-.+.-.+++... +-.++..++..
T Consensus 200 vt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 200 VTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 99987642 221 13457799988876666666543323344432 23456666554
No 205
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.42 E-value=0.00018 Score=61.71 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=55.1
Q ss_pred EEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhccC
Q 011654 3 KICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVAEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~~a 79 (480)
||+||| .|++|..+...|+++ |.+++.. +.+..+.-..+....... .+ ...+.+.+ +.+ .+.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~-~~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPE-ELSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGH-HHTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchh-HhhcC
Confidence 799999 999999999999986 6777554 555442222222110000 00 01233444 444 47999
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|+|+. ...+.... .+..|..||+.|+
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence 9999998741 11222222 2456788888764
No 206
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.41 E-value=0.00091 Score=69.92 Aligned_cols=70 Identities=27% Similarity=0.312 Sum_probs=53.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... | .+|++++++.++.+.+.+.. ........+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~----------------g~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL----------------GGEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCeEeeHHHHHHHHhhCC
Confidence 4799999999999999999987 7 78999999998877665320 001111235556688999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999998765
No 207
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.38 E-value=0.0035 Score=62.77 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=70.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVD-ISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|+|.+|..+|.+|..- | .++.|. +++...+...+- ... ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~-------------------~~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY-------------------YAE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh-------------------ccc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 555554 433322222110 001 235667789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|.|.. +++ ...+ +++...++++.++|+.+--.....+.+.+.|++.
T Consensus 220 ~ivv~~pLt-----------~~T---~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KET---RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred EEEEecCCC-----------HHH---HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999998742 222 2333 5678889999999976544444556677777664
No 208
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.38 E-value=0.0023 Score=66.73 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=54.5
Q ss_pred cEEEEEcCChhHHHH-HHHHHHc---CCCCeEEEEeCC-HHHHHHHHCCCCCCCCCChHHHHHhhc-CCCEEEecCHHHH
Q 011654 2 VKICCIGAGYVGGPT-MAVIALK---CPKIEVAVVDIS-VSRIAAWNGDQLPIYEPGLEDVVTQCR-GRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~---~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~l~~~~~-~~~l~~t~d~~~a 75 (480)
|||+|||.|..-++- ...|+.. .++-+++++|+| +++++.+..- ...+..... .-.+..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 799999999975533 3344442 345789999999 8887654320 111222111 2357889999999
Q ss_pred hccCcEEEEeccCC
Q 011654 76 VAEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+.+||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999998643
No 209
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.37 E-value=0.0016 Score=65.32 Aligned_cols=100 Identities=9% Similarity=0.036 Sum_probs=71.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+.. ++ ..-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence 468999999999999998887545578999999999988776421 00 01235668899999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. .+.+++|+.|...++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999976531 1 111 13567899887655555554
No 210
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.37 E-value=0.0018 Score=62.66 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=48.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHc-CCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH-hcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALK-CPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH-VAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
+||+|||+|+||..++..|.+. ..+++ +.++++++++.+.+... ....+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 6999999999999999998763 12355 44588888777766542 2345677774 478
Q ss_pred CcEEEEecc
Q 011654 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.|-+
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999953
No 211
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.37 E-value=0.0013 Score=66.50 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=71.1
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKC-----PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
.||+|+|+ |.+|..++..|.... .+.+|.++|+++.. +.+ .+.. -++.+... ...++++.++++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~-~~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAF-PLLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhccc-cccCCceecCCHHHH
Confidence 58999999 999999999998741 13589999997531 111 1110 01111000 001244556776677
Q ss_pred hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||++-..+.... .++ ..+.+.+++....|.++.+++.++++-| .|...
T Consensus 76 l~~aDiVI~tAG~~~~~~---~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~ 133 (325)
T cd01336 76 FKDVDVAILVGAMPRKEG---MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT 133 (325)
T ss_pred hCCCCEEEEeCCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence 999999999987654321 111 1233444666677777765555555433 45543
No 212
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.36 E-value=0.0012 Score=68.13 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=38.8
Q ss_pred cEEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHCCCC
Q 011654 2 VKICCIGAGYVGGPT-MAVIALKCPKIEVAVVDISVSRIAAWNGDQL 47 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~~v~~l~~~~~ 47 (480)
|||.++|+|.+|... +..|++. |++|+++|++++.+++|++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence 899999999999855 7788877 8999999999999999997644
No 213
>PRK06046 alanine dehydrogenase; Validated
Probab=97.36 E-value=0.0016 Score=65.93 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..|+...+-..|.+||+++++.+.+.+... + . ..-.+...++++++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~--------~---~-~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS--------S---V-VGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH--------h---h-cCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999988854223578899999998887764210 0 0 0112556788888786 999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. | +.. ...+++|+.|...++..|+.
T Consensus 197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCcc
Confidence 999987531 1 111 13467898887655555554
No 214
>PLN00106 malate dehydrogenase
Probab=97.33 E-value=0.0014 Score=66.03 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=65.8
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHHHHhc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIEKHVA 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~~a~~ 77 (480)
.||+|||+ |.+|..+|..|+.+....++.++|+++. .+. .-++......-.+. -++|+.++++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~------~g~-------a~Dl~~~~~~~~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT------PGV-------AADVSHINTPAQVRGFLGDDQLGDALK 85 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC------Cee-------EchhhhCCcCceEEEEeCCCCHHHHcC
Confidence 48999999 9999999999997622458999999871 110 00010000001232 2344566799
Q ss_pred cCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccc
Q 011654 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVK 132 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
++|+||++...|..+. .++ ..+...+++..+.+.++.+ +.+|+ .+|.|..
T Consensus 86 ~aDiVVitAG~~~~~g---~~R~dll~~N~~i~~~i~~~i~~~~p-~aivi-vvSNPvD 139 (323)
T PLN00106 86 GADLVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEAVAKHCP-NALVN-IISNPVN 139 (323)
T ss_pred CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE-EeCCCcc
Confidence 9999999988765421 010 1223344555556666553 34343 3566665
No 215
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.32 E-value=0.0011 Score=67.09 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=56.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|...+..++...+..+|.+|++++++.+.+.+.... . ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence 57999999999999888887532246899999999999888752100 0 00124557888888999999
Q ss_pred EEEeccCC
Q 011654 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|+|+.
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99997753
No 216
>PRK07574 formate dehydrogenase; Provisional
Probab=97.31 E-value=0.001 Score=68.44 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=76.0
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||.....+...++ ++
T Consensus 189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~ 236 (385)
T PRK07574 189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL 236 (385)
T ss_pred ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence 4789999999984 478899999999999999999986433322221 24
Q ss_pred eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
++..++++.++.+|+|+++..-. +-+. ++ .++.+.|++.+++|++.+ ++|.+.+
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL 294 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAV 294 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHH
Confidence 45568999999999999998753 3333 34 566778998889999854 5565443
No 217
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.29 E-value=0.0014 Score=70.49 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=76.9
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-...+++.|...|.+|.+|||+...+.. .++ +
T Consensus 134 ~~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g 180 (525)
T TIGR01327 134 TELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------G 180 (525)
T ss_pred cccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------C
Confidence 35789999999984 47889999999999999999998654322 111 2
Q ss_pred eeeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
+.+.+++++.++++|+|+++.+.. +-+. ++ .+..+.|++.+++|++.+ ++|.+.+
T Consensus 181 ~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 181 VELVDDLDELLARADFITVHTPLTPETRGLIG-AEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CEEcCCHHHHHhhCCEEEEccCCChhhccCcC-HHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 344568999999999999999874 4454 44 455678998889999854 6676544
No 218
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.28 E-value=0.001 Score=60.88 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=63.2
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654 4 ICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV 82 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
|.|+|+ |.+|..++..|.+. |++|+++-|++++.+. ..+ ..+.. +.+.-.++..++++++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789996 99999999999998 8999999999998877 221 11100 1110012345678899999
Q ss_pred EEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|.+++.+.. |....+.+++.+... +...+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999976431 344445555544443 33455555443
No 219
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.27 E-value=0.00069 Score=71.51 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=52.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHH-hccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH-VAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a-~~~a 79 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...++.. +..+-...++++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999988 9999999999999988865 2111110 111111123333 5789
Q ss_pred cEEEEeccC
Q 011654 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.++++++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999764
No 220
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.26 E-value=0.00099 Score=62.45 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=29.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
.||+|||+|.+|..+|..|++. |+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999998 88 69999998
No 221
>PLN03139 formate dehydrogenase; Provisional
Probab=97.26 E-value=0.0014 Score=67.36 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=76.3
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||.....+.... .++
T Consensus 196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA 243 (386)
T ss_pred CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence 5789999999975 47889999999999999999997533222221 123
Q ss_pred eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+.+++++.++.+|+|+++.+. ++.++ ++ .++.+.|++.+++|++-+ ++|.+.+
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL 301 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFN-KERIAKMKKGVLIVNNARGAIMDTQAV 301 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhC-HHHHhhCCCCeEEEECCCCchhhHHHH
Confidence 4456899999999999999885 44444 34 467789998889999854 6665544
No 222
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.25 E-value=0.0012 Score=67.09 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=70.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+..-.+-.+|.+|++++++.+.+.+... +. .-.+..++++++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence 3689999999999988777764445689999999999888764210 00 1236678899999999999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++... .| + ++ .+.+++|+.|....+..|+.
T Consensus 197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCc
Confidence 9999864310 01 1 11 13568898876555555554
No 223
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.25 E-value=0.0023 Score=63.84 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=66.7
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccCcEEEE
Q 011654 6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEADIVFV 84 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (480)
|||+|.+|.++|..|+.+.-.-++.++|+++++.+..... +..... ....+.+.+ .+++ ++++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 6999999999999998773234799999988765543321 000000 001123333 4454 5999999999
Q ss_pred eccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654 85 SVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA 134 (480)
Q Consensus 85 ~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+...|..+. .++ .-+...+++..+.+.++.+. .+|++- |.|..+.
T Consensus 71 tag~~rk~g---~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vivv-sNP~d~~ 119 (299)
T TIGR01771 71 TAGAPQKPG---ETRLELVGRNVRIMKSIVPEVVKSGFD-GIFLVA-TNPVDIL 119 (299)
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe-CCHHHHH
Confidence 988765431 111 11233456666677776544 444332 4565543
No 224
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.24 E-value=0.0015 Score=65.62 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=62.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..++...+-.+|.+|++++++.+.+.+... . ..-.+..++|+++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~-~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLR------------D-LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHH------------C-CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhc------------c-ccccceeccchhhhcccCCE
Confidence 3689999999999999998876555689999999999888765211 0 11357788999999999999
Q ss_pred EEEeccCCCC-cCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|+... + ..+ ...+++|+.|...++..|+.
T Consensus 196 i~taT~s~~~~P-------~~~-----------~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTPAP-------VFD-----------AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSEEE-------SB------------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCCCc-------ccc-----------HHHcCCCcEEEEecCCCCch
Confidence 9999875420 1 011 24577888887655554543
No 225
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.21 E-value=0.0021 Score=58.37 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=52.9
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|..++.-..++ ||+|+.+-||++++... ++... .. +.+.--+..++.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~-~~~~i-~q------------~Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAAR-QGVTI-LQ------------KDIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhcccc-cccee-ec------------ccccChhhhHhhhcCCc
Confidence 89999995 99999999999988 99999999999988664 22111 11 11111123345688999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-++...
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
No 226
>PRK10206 putative oxidoreductase; Provisional
Probab=97.21 E-value=0.0017 Score=66.16 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=46.6
Q ss_pred CcEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654 1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA- 77 (480)
Q Consensus 1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.++.- .+..+....++++|. ++|+++++. ...+. -+...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence 579999999997653 344343322367775 589987654 22221 022345678888775
Q ss_pred -cCcEEEEeccCCC
Q 011654 78 -EADIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 63 ~~iD~V~I~tp~~~ 76 (344)
T PRK10206 63 PDVKLVVVCTHADS 76 (344)
T ss_pred CCCCEEEEeCCchH
Confidence 6799999988654
No 227
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.20 E-value=0.0012 Score=60.71 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=50.5
Q ss_pred EEEEEcCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhc
Q 011654 3 KICCIGAGYVGGPTMA--VIALK--CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~ 77 (480)
||+|||.|..-.+.-. .+... .++.++.++|+|+++++....- .+.+.++ ...-+++.|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 8999999998777433 22221 2456899999999998865431 1122222 11235788999999999
Q ss_pred cCcEEEEecc
Q 011654 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999975
No 228
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.20 E-value=0.0024 Score=66.89 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=53.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+.. ........+..+++.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEF----------------GGEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc----------------CCcEeeHHHHHHHhccCC
Confidence 5799999999999999999887 76 8999999999887665421 001111234556678999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 245 vVI~aT~s~ 253 (423)
T PRK00045 245 IVISSTGAP 253 (423)
T ss_pred EEEECCCCC
Confidence 999998865
No 229
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.20 E-value=0.0014 Score=66.82 Aligned_cols=98 Identities=23% Similarity=0.358 Sum_probs=55.1
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+ |++|..++..|.++ ++++++.+-.+.+.-+.+.+....+. +. ....+.+-.+....++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~~~~g~~l~~~~~~~~--~~---------~~~~~~~~~~~~~~~v 69 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSRSSAGKPLSDVHPHLR--GL---------VDLVLEPLDPEILAGA 69 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECccccCcchHHhCcccc--cc---------cCceeecCCHHHhcCC
Confidence 679999997 99999999999875 67887664333332222221100000 00 0111211111235789
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||+|+|+..+ .+....+ +..|..||+.|.
T Consensus 70 D~Vf~alP~~~~---------------~~~v~~a---~~aG~~VID~S~ 100 (343)
T PRK00436 70 DVVFLALPHGVS---------------MDLAPQL---LEAGVKVIDLSA 100 (343)
T ss_pred CEEEECCCcHHH---------------HHHHHHH---HhCCCEEEECCc
Confidence 999999886421 2222222 345788998775
No 230
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.18 E-value=0.0018 Score=63.61 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=80.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCCh-HHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+++||. .+..+++..|.++|++|.+||..... .+.... .+....
T Consensus 1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA 48 (286)
T ss_pred CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence 379999984 58999999999999999999998765 433332 245667
Q ss_pred cCHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEE
Q 011654 404 WDAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVY 463 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~ 463 (480)
.++.++++++|+|+++..-+. .++.-. ..+.+.+++..++||...+=+.. .+++.|+.|.
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 889999999999999988754 333222 45677788888999998876532 3445677764
No 231
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.17 E-value=0.0015 Score=66.57 Aligned_cols=97 Identities=24% Similarity=0.398 Sum_probs=57.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|||+|||+ |++|..+...|.++ |++++. +++.+.+.-+.+.+-. +.+... ..+.+. .+.++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence 79999998 99999999999975 788888 4576543222121100 000000 011222 244554468
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+|+... .+....+ +..|..||+.|+
T Consensus 69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence 9999999986321 2222322 245788888775
No 232
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.16 E-value=0.0029 Score=63.79 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=68.4
Q ss_pred EEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654 3 KICCIGA-GYVGGPTMAVIALKCP-----KIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|++++. .+.... . +....... ...+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~-~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPL-LDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchh-cCceeccCChHH
Confidence 6999999 9999999999987410 2269999996542 221111 0 11100000 012344445345
Q ss_pred HhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 75 HVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
++++||+||++-..|.... .++ ..+.+.+++..+.|.++.+++.+++. -|.|....-
T Consensus 72 ~~~~aDiVVitAG~~~~~~---~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~t 132 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKEG---MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTNA 132 (324)
T ss_pred HhCCCCEEEEcCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHHH
Confidence 6999999999988765431 011 11233456666777777544555544 346665543
No 233
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.13 E-value=0.0028 Score=64.25 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=74.4
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||...... ...+ +.
T Consensus 147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~ 193 (333)
T PRK13243 147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA 193 (333)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence 4689999999984 4788999999999999999999765432 1111 12
Q ss_pred eeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+ .++++.++++|+|+++++..+ -+. ++ .++.+.|++.+++|++.+ ++|.+.+
T Consensus 194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHH
Confidence 22 478999999999999998754 333 44 456788998889999854 6665544
No 234
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.11 E-value=0.002 Score=65.12 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=73.4
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.- -+..+++.|...|.+|.+|||...... . .+
T Consensus 143 ~l~g~~VgIIG~G~----------IG~~vA~~L~~~G~~V~~~d~~~~~~~---~-----------------------~~ 186 (330)
T PRK12480 143 PVKNMTVAIIGTGR----------IGAATAKIYAGFGATITAYDAYPNKDL---D-----------------------FL 186 (330)
T ss_pred ccCCCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEeCChhHhh---h-----------------------hh
Confidence 46788999999854 788999999999999999999754321 0 12
Q ss_pred eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK 454 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~ 454 (480)
.+..+++++++++|+|+++.+... .+.+=-..+...|++.+++|++.+ ++|.+.
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~a 243 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPD 243 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHH
Confidence 344688999999999999998854 333223567788998889999844 566543
No 235
>PLN02928 oxidoreductase family protein
Probab=97.10 E-value=0.0025 Score=64.98 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=76.2
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-+..+++.|...|.+|.+|||....+... .++ .|.. ........
T Consensus 155 ~~l~gktvGIiG~G----------~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~~---~~~~~~~~ 213 (347)
T PLN02928 155 DTLFGKTVFILGYG----------AIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPNG---DVDDLVDE 213 (347)
T ss_pred cCCCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------cccc---cccccccc
Confidence 46789999999983 578899999999999999999975432211 000 0000 00000000
Q ss_pred eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....+++++++.+|+|+++++. ++-+.+=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~ 273 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL 273 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 01235899999999999999886 34444322566788998889999843 77765443
No 236
>PLN00203 glutamyl-tRNA reductase
Probab=97.09 E-value=0.0012 Score=70.67 Aligned_cols=73 Identities=27% Similarity=0.313 Sum_probs=54.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... |. +|+++++++++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 5799999999999999999987 75 79999999999888775210 000 00112245566789999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998754
No 237
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.08 E-value=0.0038 Score=61.89 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=83.7
Q ss_pred HHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011654 313 RIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPM 392 (480)
Q Consensus 313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
.+.+..+..+.+++|+|+|... -+..+++.|...|++|.++|...........++
T Consensus 140 ~al~~~~~~l~gk~v~IiG~G~----------iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g--------------- 194 (287)
T TIGR02853 140 MAIEHTDFTIHGSNVMVLGFGR----------TGMTIARTFSALGARVFVGARSSADLARITEMG--------------- 194 (287)
T ss_pred HHHHhcCCCCCCCEEEEEcChH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC---------------
Confidence 3333333467899999999855 789999999999999999998653322111111
Q ss_pred CCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEE-EecCC
Q 011654 393 SPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVY-SIGKP 468 (480)
Q Consensus 393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~-~iG~~ 468 (480)
...+. .+++.+.++++|+|+..+++.-+ + ....+.|++..+|||.... .|-+.+++.|.+.+ .-|-+
T Consensus 195 ----~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glP 265 (287)
T TIGR02853 195 ----LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLP 265 (287)
T ss_pred ----Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCC
Confidence 01111 23567788999999999877642 3 3455678888899999663 34567778887764 34555
Q ss_pred CCc
Q 011654 469 LDP 471 (480)
Q Consensus 469 ~~~ 471 (480)
...
T Consensus 266 g~~ 268 (287)
T TIGR02853 266 GIV 268 (287)
T ss_pred ccc
Confidence 543
No 238
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.07 E-value=0.0043 Score=62.93 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCC-CCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCP-KIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|||+ .||...+..+... + +++++ ++|+++++.+++.+.. ++...+|+++.+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~ 63 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI 63 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence 58999999 6799889888875 3 57766 4899999988877521 123568899988889
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++++||..-. . .. .+. ....+..|.-|+.+--+.....+++.+..++.
T Consensus 64 Di~~V~ipt~~P~---------~-~H-~e~---a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 64 DIACVVVRSAIVG---------G-QG-SAL---ARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred CEEEEEeCCCCCC---------c-cH-HHH---HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 9999999763110 0 11 112 22334567778777655433333444444443
No 239
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.07 E-value=0.0035 Score=66.57 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=67.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-C--------H
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-D--------I 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d--------~ 72 (480)
.|+.|+|+|.+|...+..+... |..|+++|+++++.+..++-....-+.+..+-- +...+-.+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g-~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG-GSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccc-cccccceeecCHHHHHHHHHHH
Confidence 3899999999999988888877 888999999999988777522111111110000 00001111111 1 2
Q ss_pred HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
.+.++++|+||.|+--|-.. .|- -+.++..+.+++|.+||+-|.-
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP~-----Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------APK-----LITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CCe-----eehHHHHhhCCCCCEEEEeeeC
Confidence 23467899999998222100 111 1234556778899999887653
No 240
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.07 E-value=0.0034 Score=63.47 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=56.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||+|.+|...+..|+... + .+|++|++++++.+.+.+... .. ....+...+++++++.++|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997432 4 579999999999888764210 00 0112455688888899999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999997753
No 241
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0047 Score=61.15 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=63.1
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|+|+|.+- ....+++..|.++|+.|.+++-..
T Consensus 153 ~~i~l~Gk~V~vIG~s~---------ivG~PmA~~L~~~gatVtv~~~~t------------------------------ 193 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSN---------IVGKPMAALLLQAHCSVTVVHSRS------------------------------ 193 (301)
T ss_pred hCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34478999999999752 588999999999999999986432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.++++.||+||.++..+.+-.-+| +++..+|||..
T Consensus 194 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 194 ------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 256788899999999999998654333 45667999986
No 242
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.00 E-value=0.0022 Score=66.05 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=59.4
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Ee-cCHHHHhc
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FS-TDIEKHVA 77 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t-~d~~~a~~ 77 (480)
+|||+|+|+ |++|.-+...|..+ |+++++.+..+.+.-+.+......+. .+... +. .+.++ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 369999996 99999999999987 78899999876543222222111000 01111 11 12222 58
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
++|+||+|+|.. +...+.+.+..+..||+.|+-
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 899999998742 233344434457888887763
No 243
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.99 E-value=0.0051 Score=65.09 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .....++..|.++|.+|.+||...+..+...+... ..+ ..+..++
T Consensus 2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH 55 (470)
T ss_pred CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence 479999995 48899999999999999999986554322221100 000 1234567
Q ss_pred CHHHhcc---cccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654 405 DAYQAAK---DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW 472 (480)
Q Consensus 405 ~~~~a~~---~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~ 472 (480)
+++++++ .+|+|++++...+.-+--.+.+...+.+..+|||+.+..... ++++.|+.|.+.|...-+|
T Consensus 56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 8888886 489999997776533222356777777777999999988543 4556799999998766554
No 244
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.99 E-value=0.0039 Score=67.15 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=75.7
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||+...+.. .. .++
T Consensus 137 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~----------------------~g~ 183 (526)
T PRK13581 137 ELYGKTLGIIGLG----------RIGSEVAKRAKAFGMKVIAYDPYISPERA-AQ----------------------LGV 183 (526)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hh----------------------cCC
Confidence 4689999999984 47889999999999999999998654322 11 123
Q ss_pred eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+. ++++.++.+|+|+++.+.. +-++ ++ .+..+.|++.+++|++.+ ++|.+.+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL 240 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIG-AEELAKMKPGVRIINCARGGIIDEAAL 240 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcC-HHHHhcCCCCeEEEECCCCceeCHHHH
Confidence 444 7999999999999999884 4444 34 467788998889999855 6665544
No 245
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.99 E-value=0.0038 Score=66.40 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=50.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999988887754210 00000112222 568999
Q ss_pred EEEeccCC
Q 011654 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99998753
No 246
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.98 E-value=0.0042 Score=61.95 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=77.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
++|+|+|+.. ....+++.|.+.|.+|.+||+.....+...+ .+...+.
T Consensus 2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~ 49 (296)
T PRK15461 2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA 49 (296)
T ss_pred CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence 3799999866 8899999999999999999996544322211 1234567
Q ss_pred CHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654 405 DAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
++.++++++|+|++++..+. .+..- .+.+...+++..+|+|+..+.+.. .+.+.|+.|..-
T Consensus 50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 88899999999999998874 33321 123455566667999998887642 344568877543
No 247
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.97 E-value=0.0048 Score=62.22 Aligned_cols=100 Identities=14% Similarity=0.247 Sum_probs=74.1
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL-GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-...+++.|. .-|.+|.+|||....+.. ..+ +
T Consensus 142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~ 188 (323)
T PRK15409 142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N 188 (323)
T ss_pred CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence 4689999999984 47788999997 889999999998654321 111 2
Q ss_pred eeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
..+ .++++.++.+|+|+++.+... -+. ++. +..+.|++.+++|.+.+ ++|.+.+
T Consensus 189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~vVde~AL 246 (323)
T PRK15409 189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-EQFAKMKSSAIFINAGRGPVVDENAL 246 (323)
T ss_pred cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECCCccccCHHHH
Confidence 233 489999999999999988744 334 454 45678998889999854 6776544
No 248
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.97 E-value=0.0041 Score=60.65 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=65.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||.|.-|.+-|.+|.+. |.+|++=-+.... .+...+ .++++ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 5899999999999999999998 9997754332221 222222 23543 46788999999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~ST 128 (480)
+|++-+|.-.+ .++.+ .|.+.+++|..+.....
T Consensus 77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEeccc
Confidence 99999885322 34555 89999999998776544
No 249
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.96 E-value=0.0035 Score=62.89 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=73.0
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||...... ..+
T Consensus 142 ~L~gktvGIiG~G----------~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~ 185 (311)
T PRK08410 142 EIKGKKWGIIGLG----------TIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY 185 (311)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence 4689999999984 4678999999999999999999643210 112
Q ss_pred eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
. ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+ ++|.+.+
T Consensus 186 ~-~~~l~ell~~sDvv~lh~Plt~~T~~li~-~~~~~~Mk~~a~lIN~aRG~vVDe~AL 242 (311)
T PRK08410 186 E-RVSLEELLKTSDIISIHAPLNEKTKNLIA-YKELKLLKDGAILINVGRGGIVNEKDL 242 (311)
T ss_pred e-eecHHHHhhcCCEEEEeCCCCchhhcccC-HHHHHhCCCCeEEEECCCccccCHHHH
Confidence 2 24799999999999999987 44444 45 455678998889999754 7776544
No 250
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.93 E-value=0.0047 Score=62.57 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=69.0
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-+..+++.| ...|.+|.+|||...... . ..
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~ 187 (332)
T PRK08605 143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY 187 (332)
T ss_pred eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence 4688999999984 4778899998 567999999999865421 1 11
Q ss_pred eeeecCHHHhcccccEEEEEeccccccc-ccHHHHHHhcCCCCEEEEcCC
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDEFKT-LDYQKIFDNMRKPAYIFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~-~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+...++++++++++|+|+++++...... +--..+.+.|++.+++||+.+
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 2345689999999999999988755332 211456778998889999865
No 251
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.93 E-value=0.0069 Score=62.19 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=73.1
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-...+++.|..-|.+|.+|||...... ..
T Consensus 112 ~~L~gktvGIIG~G----------~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~~ 155 (378)
T PRK15438 112 FSLHDRTVGIVGVG----------NVGRRLQARLEALGIKTLLCDPPRADRG--------------------------DE 155 (378)
T ss_pred CCcCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------cc
Confidence 46799999999984 4778999999999999999999643210 00
Q ss_pred eeeecCHHHhcccccEEEEEecccc------cccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDE------FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~------~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
. ...++++.++.+|+|+++++... +.=++- +..+.|++.+++|++.+ ++|.+.+.
T Consensus 156 ~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~ 218 (378)
T PRK15438 156 G-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL 218 (378)
T ss_pred c-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence 1 13578999999999999887632 222444 55678898889999865 77766543
No 252
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.92 E-value=0.036 Score=61.67 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=85.8
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC----c
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP----E 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (480)
||+|+|. +.+.+.++++.++++++++|.+-+++.....+.+.+.+... ..-+|..+| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence 6899873 34678899999999999999987666544444444443321 112566777 4
Q ss_pred cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHHhHHHHHHHHHHHHH
Q 011654 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
..+..++..+++....+++ ++.+.+++++++.+++++..++ ..+..++++ .-+++-++.-.-..+..++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il-~p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVL-CALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555566778887776665 4545557888999999999984 567777764 45555555555444445555444
No 253
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.91 E-value=0.0064 Score=64.58 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=83.8
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
-.+|+++||.- +...+++.|.++|++|.+||...+..+...+... ..+. ..+..+
T Consensus 6 ~~~IG~IGLG~----------MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~--------------~~Ga-~~~~~a 60 (493)
T PLN02350 6 LSRIGLAGLAV----------MGQNLALNIAEKGFPISVYNRTTSKVDETVERAK--------------KEGN-LPLYGF 60 (493)
T ss_pred CCCEEEEeeHH----------HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh--------------hcCC-cccccC
Confidence 35799999965 8999999999999999999986554332221000 0000 112356
Q ss_pred cCHHHhccc---ccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCC
Q 011654 404 WDAYQAAKD---AHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIGKP 468 (480)
Q Consensus 404 ~~~~~a~~~---ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~ 468 (480)
+|+.++++. +|+|+++...++--+--++.+...+.+..+|||+.+.... +.+++.|+.|.+.|..
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVS 134 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVS 134 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCc
Confidence 788888876 9999999988763221224567777667799999999753 3455679999988764
No 254
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.91 E-value=0.0063 Score=60.04 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=57.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHH-HHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIA-AWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.-++..+.+. ++.++. ++|++++... ...+. .|.-...++.++.++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~ 63 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP 63 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence 6899999999999988777753 467766 5788886532 12211 011123456666553
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.|+||+|+|+..+. +.....+..|..|++++.
T Consensus 64 dIDaV~iaTp~~~H~------------------e~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 64 DIDIVFDATSAKAHA------------------RHARLLAELGKIVIDLTP 96 (285)
T ss_pred CCCEEEECCCcHHHH------------------HHHHHHHHcCCEEEECCc
Confidence 679999998865432 122233456788887653
No 255
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.88 E-value=0.0068 Score=60.51 Aligned_cols=107 Identities=11% Similarity=0.164 Sum_probs=76.6
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.- ....+++.|.+.|.+|.+||+.....+.... .+....++
T Consensus 2 ~Ig~IGlG~----------mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLGK----------MGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS 49 (299)
T ss_pred EEEEEcccH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 699999854 7899999999999999999986433221111 12455678
Q ss_pred HHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654 406 AYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
+++.+++ +|+|++++..+ ..+++ +..+...+++..+|||+.+.-+.. .+++.|+.|..-
T Consensus 50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda 118 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC 118 (299)
T ss_pred HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC
Confidence 8888776 69999999998 45543 245666676667999998877643 233668888663
No 256
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.86 E-value=0.0046 Score=61.03 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=53.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|.+++..|+.. | .+|++++|+.++.+.+.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 4789999999999999999987 7 79999999999888776421000 00122112334568899
Q ss_pred EEEEeccCCC
Q 011654 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|...
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999988654
No 257
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.86 E-value=0.0059 Score=58.55 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=55.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---CCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN---GDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.||.|+|.|.+|.+.|..+..++.-.++.++|.++++.+.-. +...+| ....++....|+.. -++
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f-----------~~~~~V~~~~Dy~~-sa~ 88 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAF-----------LSTPNVVASKDYSV-SAN 88 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccccc-----------ccCCceEecCcccc-cCC
Confidence 489999999999999998887633468999999998654211 111111 12356777778764 689
Q ss_pred CcEEEEeccCCCC
Q 011654 79 ADIVFVSVNTPTK 91 (480)
Q Consensus 79 aDvVii~Vptp~~ 91 (480)
++++|++......
T Consensus 89 S~lvIiTAGarq~ 101 (332)
T KOG1495|consen 89 SKLVIITAGARQS 101 (332)
T ss_pred CcEEEEecCCCCC
Confidence 9999999876543
No 258
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.84 E-value=0.0063 Score=60.50 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=68.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+....+
T Consensus 3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 50 (296)
T PRK11559 3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS 50 (296)
T ss_pred ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999865 7789999999999999999996543222111 1234567
Q ss_pred CHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh
Q 011654 405 DAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDV 452 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
+++++++++|+|++++.-+. .+.+- .+.+...+++..+|+|+..+...
T Consensus 51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~ 101 (296)
T PRK11559 51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL 101 (296)
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence 88999999999999987543 22211 12355566666799999888753
No 259
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.84 E-value=0.0049 Score=61.45 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=67.8
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... .++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF 60 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence 468999999998 468999999999999999999754333222211 123
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.. .++.++++.||+|+++.+.++-+++=...+...|++.++++=+.
T Consensus 61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECC
Confidence 33 38999999999999999876544432256788888776664433
No 260
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.84 E-value=0.0008 Score=69.62 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=68.8
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE----ecC---HHHH
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF----STD---IEKH 75 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~----t~d---~~~a 75 (480)
|.|+|+|.+|..++..|++.. .+ +|++.|++.++.+++.+... ..++.. .+| +++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~---------------~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLL---------------GDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--T---------------TTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcc---------------ccceeEEEEecCCHHHHHHH
Confidence 789999999999999999873 35 89999999999998875310 011111 122 4556
Q ss_pred hccCcEEEEeccCCCCcCCCC-----CCCCCChHHHHHHHHHHHhhC-CCCCEEEEecCCccchHHHHHH
Q 011654 76 VAEADIVFVSVNTPTKTQGLG-----AGKAADLTYWESAARMIANVS-NSNKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~-----~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~ 139 (480)
++++|+||-|+|...+..-+. +....|.+++......+.+.. +.+..++......||.+..+..
T Consensus 65 ~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~ 134 (386)
T PF03435_consen 65 LRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLAR 134 (386)
T ss_dssp HTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHH
T ss_pred HhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHH
Confidence 789999999997432110000 011233333222233332222 3577778777888888776543
No 261
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.024 Score=59.91 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=68.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++. +.++...+ ++... .-.+.......+...++|
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~-----------~l~~~--~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALE-----------ELGEL--GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHH-----------HHHhc--CCEEEeCCcchhHhhcCC
Confidence 4799999999999999999998 99999999985 22221110 01000 001211122223356799
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+||.+...+. +-..+..+-+ .+....+ ..+|.+..|..-.||.. +..+|+..+
T Consensus 71 ~vv~~~g~~~-----------~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 71 LVVVSPGVPL-----------DSPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred EEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 9999865432 1122222211 1122223 56777777776666665 567777643
No 262
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.83 E-value=0.013 Score=51.52 Aligned_cols=79 Identities=18% Similarity=0.059 Sum_probs=61.3
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|-+. .-..+++..|.++|+.|.+.+-..
T Consensus 22 ~~~~~~gk~v~VvGrs~---------~vG~pla~lL~~~gatV~~~~~~t------------------------------ 62 (140)
T cd05212 22 EGVRLDGKKVLVVGRSG---------IVGAPLQCLLQRDGATVYSCDWKT------------------------------ 62 (140)
T ss_pred cCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44578999999999644 678899999999999999877432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++++++++||+||.+|..+.+ ++.+++ ++..+|+|.-
T Consensus 63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~i----kpGa~Vidvg 100 (140)
T cd05212 63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEWI----KPGATVINCS 100 (140)
T ss_pred ------cCHHHHHhhCCEEEEecCCCCc--cCHHHc----CCCCEEEEcC
Confidence 1467789999999999999964 555554 4556787764
No 263
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0049 Score=61.08 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=53.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|-+|.+++..|+.. |. +|+++||+.++.+.+.+... .......+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~-----------~~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELN-----------ARFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHH-----------hhCCCeEEEeccchHhhhCCCC
Confidence 4799999999999999999987 65 79999999999888764210 0000001222234444578899
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999997754
No 264
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.82 E-value=0.0094 Score=59.55 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=77.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.- ....+++.|.+.|.+|.+||+.-...+...+ .+....++
T Consensus 2 ~Ig~IGlG~----------MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLGR----------MGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS 49 (301)
T ss_pred EEEEEcccH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 799999854 8899999999999999999997543222221 23455677
Q ss_pred HHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011654 406 AYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIG 466 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
+.+.++. +|+|++++..+ ..++. +..+...+++..+|||+.+.... +.+++.|+.|...+
T Consensus 50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 8887765 69999999887 44442 34566667666799999887753 23456788887654
No 265
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.81 E-value=0.0045 Score=61.80 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=71.8
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||....... .
T Consensus 119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~ 161 (303)
T PRK06436 119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S 161 (303)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence 5789999999984 47889999998889999999997432100 0
Q ss_pred eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++.+.. +-++ ++ ....+.|++.+++|++.+ ++|.+.+
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~-~~~l~~mk~ga~lIN~sRG~~vd~~aL 219 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMIN-SKMLSLFRKGLAIINVARADVVDKNDM 219 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcC-HHHHhcCCCCeEEEECCCccccCHHHH
Confidence 11357899999999999998874 3344 34 556678998889999855 5665443
No 266
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.81 E-value=0.013 Score=60.27 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=72.8
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-+..+++.|...|.+|.+|||...... .
T Consensus 111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~ 154 (381)
T PRK00257 111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G 154 (381)
T ss_pred CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 346789999999984 3678899999999999999999532110 0
Q ss_pred ceeeecCHHHhcccccEEEEEeccc------ccccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWD------EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~------~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
... ..++++.++++|+|+++++.. .+.=++- +..+.|++.+++|++.+ ++|.+.+.
T Consensus 155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVde~AL~ 218 (381)
T PRK00257 155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDE-AFLASLRPGAWLINASRGAVVDNQALR 218 (381)
T ss_pred Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCH-HHHhcCCCCeEEEECCCCcccCHHHHH
Confidence 111 247899999999999999873 2333454 45678888889999754 66765543
No 267
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0043 Score=61.92 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=46.5
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHH-hc
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKH-VA 77 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a-~~ 77 (480)
|+||+|||. ||-|.-+...|+.+ |..++..+..+..+=+.+.+- .|.+..+. .+++.. |.++. ..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~~------~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGLV------DLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Cccccccc------ccccccCChhhhhcc
Confidence 689999995 99999999999987 678877777654322222221 11111100 122222 23332 45
Q ss_pred cCcEEEEeccC
Q 011654 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||+|+|.
T Consensus 70 ~~DvvFlalPh 80 (349)
T COG0002 70 ECDVVFLALPH 80 (349)
T ss_pred cCCEEEEecCc
Confidence 69999999884
No 268
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0045 Score=60.82 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=54.6
Q ss_pred cEEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYV-GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|.+ |.|+|..|.++ |..|+++... |.++.+.+++||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999999887 99999999988 8999986531 235566689999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++|+|-- +. ...+++|.+||+.+
T Consensus 204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG 230 (285)
T PRK14189 204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG 230 (285)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999997621 11 15678999998644
No 269
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.76 E-value=0.006 Score=63.92 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=53.1
Q ss_pred cEEEEEcCChhHHH--HHHHHHHc---CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHH
Q 011654 2 VKICCIGAGYVGGP--TMAVIALK---CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||+|.. .+ +...|+.. .++-+|+++|+|+++.+.+.+- ...+..+. ..-+++.|+|.++|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA 71 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA 71 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999986 32 33344432 3567999999999988764420 11112111 12357899999999
Q ss_pred hccCcEEEEecc
Q 011654 76 VAEADIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+++||+||.++-
T Consensus 72 l~gADfVi~~ir 83 (437)
T cd05298 72 FTDADFVFAQIR 83 (437)
T ss_pred hCCCCEEEEEee
Confidence 999999999975
No 270
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.74 E-value=0.0099 Score=62.26 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=67.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|||+|.+|.++|..|.+. |++|+++|++++...... ... . ....+.+....++|+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~~~~~~-------------~~~----~--~~~~~~~~~~~~~dl 62 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEALQSCP-------------YIH----E--RYLENAEEFPEQVDL 62 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccccchhH-------------HHh----h--hhcCCcHHHhcCCCE
Confidence 5799999999999999999988 899999998765332110 000 0 011222333467999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHH-------H--HH-hh--CCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-------M--IA-NV--SNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-------~--i~-~~--l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
||.+.+.+. +...++++.+ . ++ .. .....+|-+..|..-+||.. +..+|+..+
T Consensus 63 vV~s~gi~~-----------~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 63 VVRSPGIKK-----------EHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred EEECCCCCC-----------CcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 988866542 1123333332 0 11 11 11345677777776666665 677887643
No 271
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.73 E-value=0.0037 Score=65.15 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=54.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||.|||+|-||..++..|+.. | .++++++|+.++.+.+.+... .......++..+.+.++|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999987 6 579999999999888775310 011222244556688999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 245 iVI~aT~a~ 253 (414)
T PRK13940 245 IIIAAVNVL 253 (414)
T ss_pred EEEECcCCC
Confidence 999998876
No 272
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.73 E-value=0.0098 Score=58.48 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=61.6
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|+|+|.|- ....+++..|.++|+.|.++....
T Consensus 152 ~~i~l~Gk~v~vIG~S~---------ivG~Pla~lL~~~gatVtv~~s~t------------------------------ 192 (284)
T PRK14179 152 YNVELEGKHAVVIGRSN---------IVGKPMAQLLLDKNATVTLTHSRT------------------------------ 192 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34468999999999643 578899999999999999983221
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||+||.++..+.|-.-+ . +++.++|||.-
T Consensus 193 ------~~l~~~~~~ADIVI~avg~~~~v~~~--~----ik~GavVIDvg 230 (284)
T PRK14179 193 ------RNLAEVARKADILVVAIGRGHFVTKE--F----VKEGAVVIDVG 230 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCccccCCHH--H----ccCCcEEEEec
Confidence 25677889999999999999984422 2 45567999975
No 273
>PLN03075 nicotianamine synthase; Provisional
Probab=96.72 E-value=0.012 Score=58.14 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=80.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHH---hc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKH---VA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a---~~ 77 (480)
.+|..||+|..|.+....++...|+-.++++|++++.++..++--.. .+++. .+++|. .|..+. ..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999997666665555677899999999988876642100 11221 234442 232221 36
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC-CCCceeEeeCC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS-REIKYQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~P 156 (480)
+.|+||+.+=-.. |-..-..+++.+.+.+++|.+++..| .-|....+.+.+.... .|.+.....+|
T Consensus 195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 8899999952111 11123678999999999999998876 2343333444332211 13344455667
Q ss_pred c
Q 011654 157 E 157 (480)
Q Consensus 157 e 157 (480)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
No 274
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.70 E-value=0.0065 Score=60.47 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=73.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||.....+.. .. .+.....+
T Consensus 2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s 48 (292)
T PRK15059 2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET 48 (292)
T ss_pred eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence 699999865 8899999999999999999875332221 11 12345678
Q ss_pred HHHhcccccEEEEEecccc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011654 406 AYQAAKDAHGVCILTEWDE-FKTL--DYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~h~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
+.++++++|+|++++..+. .++. ....+...+.+..+|||+..+-+. +.+++.|..|..
T Consensus 49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8899999999999999863 2221 111233444556699999887764 344566777755
No 275
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.69 E-value=0.012 Score=58.67 Aligned_cols=114 Identities=13% Similarity=0.220 Sum_probs=78.1
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.- ....+++.|.+.|.+|.+||......+...+. ......+
T Consensus 2 ~Ig~IGlG~----------mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLGR----------MGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN 49 (298)
T ss_pred EEEEEcchH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence 699999844 88899999999999999999875443222211 1112234
Q ss_pred HHH---hcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654 406 AYQ---AAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW 472 (480)
Q Consensus 406 ~~~---a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~ 472 (480)
+.+ .++.+|+|+++++....+++ .+.+...+++..+|||+.+..... .+++.|+.|..-+...-++
T Consensus 50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~ 124 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVW 124 (298)
T ss_pred HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 444 45678999999999855543 356667776667999999987533 3336689998877544333
No 276
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.69 E-value=0.0053 Score=61.62 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=72.9
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||...... .. ...
T Consensus 133 ~l~g~tvgIvG~G----------~IG~~vA~~l~afG~~V~~~~~~~~~~~---~~---------------------~~~ 178 (312)
T PRK15469 133 HREDFTIGILGAG----------VLGSKVAQSLQTWGFPLRCWSRSRKSWP---GV---------------------QSF 178 (312)
T ss_pred CcCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCCCCCCC---Cc---------------------eee
Confidence 5688999999984 4788999999999999999998643210 00 001
Q ss_pred eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
....+++++++++|+|+++.+... -+.+=-....+.|++.+++|++-+ ++|.+.+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL 236 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDL 236 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHH
Confidence 113578999999999999988744 333322456778998889999754 6676544
No 277
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.68 E-value=0.0031 Score=69.06 Aligned_cols=72 Identities=14% Similarity=0.327 Sum_probs=53.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHH-Hhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEK-HVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
++|.|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+.. +..-.+. +++ -+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~--------------L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLEL--------------LRAAGAEK 464 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHH--------------HHhcCCcc
Confidence 4689999999999999999988 9999999999999999886433222 1111111 111 1568
Q ss_pred CcEEEEeccCC
Q 011654 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
||.++++++++
T Consensus 465 A~~vv~~~~d~ 475 (601)
T PRK03659 465 AEAIVITCNEP 475 (601)
T ss_pred CCEEEEEeCCH
Confidence 99999998753
No 278
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.68 E-value=0.005 Score=56.03 Aligned_cols=53 Identities=28% Similarity=0.533 Sum_probs=43.5
Q ss_pred cEEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYV-GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|.| |.++|..|.++ |.+|++.+++.+ ++.+.+.++|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99999999988 889999997531 2334578999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999998865
No 279
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.68 E-value=0.01 Score=61.22 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=57.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCC-CEEEecCHHHHhccC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCP-KIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGR-NLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~-~l~~t~d~~~a~~~a 79 (480)
.+++|||+|..+......++.-.+ -.+|.+|++++++.+.+.+.. -...... .+..+++.++++++|
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~-----------~~~~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV-----------AETYPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----------HHhcCCCceEEEeCCHHHHHcCC
Confidence 468999999999999998887433 358999999999988876421 0000001 267789999999999
Q ss_pred cEEEEeccC
Q 011654 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+++
T Consensus 225 DIVvtaT~s 233 (379)
T PRK06199 225 DIVTYCNSG 233 (379)
T ss_pred CEEEEccCC
Confidence 999999864
No 280
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.67 E-value=0.012 Score=57.55 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=55.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--hcCCCEEEe-cCHHH---H
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--CRGRNLFFS-TDIEK---H 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~~~~~l~~t-~d~~~---a 75 (480)
.||++||.|.+-++.-......+++..|.++|+|++.++.-++ ++.. ....++++. .|..+ .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence 3899999999988654433333345679999999998775542 1110 012345543 34322 2
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV 129 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++|+|+++---.. +-..-.++++.+.+++++|++|+.+|.-
T Consensus 190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 568899999954321 2223478999999999999999999754
No 281
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.67 E-value=0.0074 Score=63.12 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=53.5
Q ss_pred cEEEEEcCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654 2 VKICCIGAGYV-GGPTMAVIALK---CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~ 76 (480)
|||+|||.|.. ...+...|++. .++.+|+++|+|+++.+.+.+- ...+..+. ..-+++.|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 22233444432 3567999999999888764320 11122211 123578999999999
Q ss_pred ccCcEEEEeccC
Q 011654 77 AEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999999753
No 282
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.67 E-value=0.0075 Score=62.86 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-+..+++.|..-|.+|.+|||..... ....
T Consensus 148 ~L~gktvGIiG~G----------~IG~~vA~~~~~fGm~V~~~d~~~~~~--------------------------~~~~ 191 (409)
T PRK11790 148 EVRGKTLGIVGYG----------HIGTQLSVLAESLGMRVYFYDIEDKLP--------------------------LGNA 191 (409)
T ss_pred cCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCCcccc--------------------------cCCc
Confidence 5789999999984 467899999999999999999963210 0123
Q ss_pred eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+..++++.++.+|+|+++.+.. +-+.+==.+..+.|++.+++|.+.+ ++|.+.+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 249 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDAL 249 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHH
Confidence 44568999999999999998873 3444322456678998889999853 6676544
No 283
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.66 E-value=0.0087 Score=59.41 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=71.3
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||+....-+.... .+.....+
T Consensus 1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~ 48 (291)
T TIGR01505 1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET 48 (291)
T ss_pred CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence 589999865 8899999999999999999987533222111 12234567
Q ss_pred HHHhcccccEEEEEecccc-cccc--cHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654 406 AYQAAKDAHGVCILTEWDE-FKTL--DYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~h~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
..++++++|+|++++.-+. .+.+ ....+...+++..+|+|+.+..... .+++.|+.|..
T Consensus 49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8899999999999987642 2221 1123445566667999988776532 23345666654
No 284
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0073 Score=59.46 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=44.1
Q ss_pred cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|. +|.|+|..|... |..|+.+++.. .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999998531 23455688999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999875
No 285
>PLN02306 hydroxypyruvate reductase
Probab=96.64 E-value=0.01 Score=61.23 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=74.9
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEECCCCChHHHH--HhhhccccCCCCCCCCCCCCCCCC
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL-GDKAKLSIYDPQVTEDQIQ--RDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+.+++|+|+|+.- -...+++.|. .-|.+|.+|||+...+... ..++ ..+.. .....
T Consensus 162 ~L~gktvGIiG~G~----------IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~-------~~~~~ 221 (386)
T PLN02306 162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKA-------NGEQP 221 (386)
T ss_pred CCCCCEEEEECCCH----------HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---ccccc-------ccccc
Confidence 57899999999853 6788999985 7899999999987532110 0110 00000 00000
Q ss_pred CceeeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
..+.+..++++.++.+|+|+++.... +-+. ++- +..+.|++.+++|.+.+ ++|.+.+
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~-~~l~~MK~ga~lIN~aRG~lVDe~AL 282 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINK-ERLALMKKEAVLVNASRGPVIDEVAL 282 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCH-HHHHhCCCCeEEEECCCccccCHHHH
Confidence 11233468999999999999988873 3333 454 45578999889999854 7776544
No 286
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.62 E-value=0.017 Score=54.28 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=29.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.||...+..|.+. |++|++++.+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 4799999999999999999998 89999998653
No 287
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.62 E-value=0.019 Score=57.17 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=77.2
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|..- -+..++..|.+.|++|.++|...........++ .
T Consensus 147 ~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~----------------- 196 (296)
T PRK08306 147 PITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKSAHLARITEMG---L----------------- 196 (296)
T ss_pred CCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C-----------------
Confidence 3456789999999754 789999999999999999999854432222221 0
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEE
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYS 464 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~ 464 (480)
.....+++.+.++++|+|+..+++.. ++ ....+.|++..+|||.-.- .+-+..++.|++..+
T Consensus 197 ~~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 197 SPFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred eeecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 00112356788899999999887653 22 4455678888899998543 223455677887765
No 288
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.59 E-value=0.014 Score=49.27 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=35.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD 45 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
|.|+|.|.+|..++..|.+. +.+|+++|.++++++.+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc
Confidence 57999999999999999996 78999999999999998864
No 289
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.59 E-value=0.014 Score=57.82 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRI--AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v--~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-- 76 (480)
+||+|||+|.+|.-++..+.+. ++.++. ++|+|++.. +..++-..+.. .++.++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~ 65 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM 65 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence 5799999999999988877763 467765 589988642 22222222221 23444433
Q ss_pred ---ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 77 ---AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 77 ---~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.|+||+|+|...+ .+ ......+.|..|++.|.
T Consensus 66 ~~~~dIDiVf~AT~a~~H---------------~e---~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 66 PEFDDIDIVFDATSAGAH---------------VR---HAAKLREAGIRAIDLTP 102 (302)
T ss_pred cCCCCCCEEEECCCHHHH---------------HH---HHHHHHHcCCeEEECCc
Confidence 468999999775321 11 22223456888888764
No 290
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.58 E-value=0.021 Score=60.82 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=65.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCE-EEecCH------
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNL-FFSTDI------ 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l-~~t~d~------ 72 (480)
.||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-...+. +..-++.. ..+-. ..+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence 3899999999999887777766 8899999999999988876322210 00000000 00000 011221
Q ss_pred --HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 73 --EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 73 --~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.+.++|+||.|+..|... .+. .+.++..+.++++.+|++.+.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~-------aP~-----lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKP-------APK-----LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCccc-------Ccc-----hHHHHHHHhcCCCCEEEEEcc
Confidence 12235799999999765321 121 123555666788888877553
No 291
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.57 E-value=0.0041 Score=62.45 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=51.2
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|.++ ||+|++++|+++....+......+. .+.+.-..++.++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999998 9999999999876554432111110 112221234556788999
Q ss_pred EEEEeccC
Q 011654 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-+++.
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
No 292
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.56 E-value=0.015 Score=59.98 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=55.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|+.|||+|-||.-.|.+|+.+ | .+|++.+|+.++.+.|.+.. .+....-+++.+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~----------------~~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKL----------------GAEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHh----------------CCeeecHHHHHHhhhhCC
Confidence 3699999999999999999998 6 68999999999999887531 112222345566789999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999998665
No 293
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.0095 Score=61.58 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=55.2
Q ss_pred cEEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654 2 VKICCIGAGYVGGPTMA--VIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|..++|--. .+.. ..|+.++.++|+++++.+.+.. -++.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~--------~~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAI--------LAKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHH--------HHHHHHHhhCCCeEEEEecCHHHHh
Confidence 58999999999987543 2222 2467899999999998874332 012233321 123478899999999
Q ss_pred ccCcEEEEecc
Q 011654 77 AEADIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999974
No 294
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.52 E-value=0.0084 Score=60.36 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=72.5
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||...... .
T Consensus 145 ~l~gktvgIiG~G----------~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~ 186 (317)
T PRK06487 145 ELEGKTLGLLGHG----------ELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P 186 (317)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence 3689999999984 4778999999999999999999643210 1
Q ss_pred eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654 401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
. ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~-~~~~~~mk~ga~lIN~aRG~vVde~AL~ 244 (317)
T PRK06487 187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIG-ARELALMKPGALLINTARGGLVDEQALA 244 (317)
T ss_pred c-ccCHHHHHHhCCEEEECCCCChHHhcCcC-HHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1 23789999999999999887 44444 45 455578998889999864 77765443
No 295
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.50 E-value=0.0058 Score=66.46 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=38.0
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
+|.|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~ 459 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER 459 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC
Confidence 588999999999999999998 99999999999999998863
No 296
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.50 E-value=0.0058 Score=55.57 Aligned_cols=111 Identities=21% Similarity=0.162 Sum_probs=64.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC----ChH-----HHHHhhcCCCEEEecCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP----GLE-----DVVTQCRGRNLFFSTDI 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~----~l~-----~l~~~~~~~~l~~t~d~ 72 (480)
.||.|+|.|.+|..-+..|... |++|+.+|.++++.+.+........+. ... .-.... .-......+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE--HPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH--HCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhH--HHHHhHHHH
Confidence 5899999999999999888887 999999999999888776532111100 000 000000 000011234
Q ss_pred HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.++.+|+||.+.--+-.. .| .-+.++..+.++++.+|++-|.
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence 55678999999876543211 12 1123455566789999988653
No 297
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.48 E-value=0.02 Score=57.65 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=75.6
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++++|+|+. .-...+++.|..-|.+|.+|||.-.++ ...+ .
T Consensus 141 ~~~l~gktvGIiG~G----------rIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~----------------------~ 187 (324)
T COG1052 141 GFDLRGKTLGIIGLG----------RIGQAVARRLKGFGMKVLYYDRSPNPE-AEKE----------------------L 187 (324)
T ss_pred ccCCCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCCChH-HHhh----------------------c
Confidence 346889999999984 467899999998899999999987622 2221 1
Q ss_pred ceeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
+..|.+ +++.++.+|.|++..+- ++-+. ++- +..+.|++.+++|.+-+ +.|.+.+
T Consensus 188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~-~~l~~mk~ga~lVNtaRG~~VDe~AL 246 (324)
T COG1052 188 GARYVD-LDELLAESDIISLHCPLTPETRHLINA-EELAKMKPGAILVNTARGGLVDEQAL 246 (324)
T ss_pred Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH-HHHHhCCCCeEEEECCCccccCHHHH
Confidence 245665 99999999999998876 44333 454 44578998889998754 6676543
No 298
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.48 E-value=0.049 Score=58.25 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|..|.+.+..|... |++|+++|.+++..+.+.+.... +.......+.+.++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888887 99999999887766554431111 1111122334678999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HHH-hhC------CCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIA-NVS------NSNKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~-~~l------~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
||.+-.-|.+ . ..++.+-+ ++. ... .+..+|-+..|..-.||.. +..+|+..
T Consensus 74 VV~SpGi~~~--------~---p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 74 VVTSPGFRPT--------A---PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred EEECCCCCCC--------C---HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 9888654432 1 22222211 111 111 1335777777877667665 56778764
Q ss_pred C
Q 011654 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 143 g 143 (488)
T PRK03369 143 G 143 (488)
T ss_pred C
Confidence 3
No 299
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.45 E-value=0.016 Score=53.79 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=51.6
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecC---HHHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STD---IEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d---~~~a 75 (480)
+++.|+|. |.+|..++..|++. |++|++++|+.++.+.+.+... .. ....+.. ..+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~-----------~~-~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLR-----------AR-FGEGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHH-----------hh-cCCcEEEeeCCCHHHHHHH
Confidence 57999995 99999999999987 8999999999988877653210 00 0011221 122 2356
Q ss_pred hccCcEEEEeccCC
Q 011654 76 VAEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++++|+||.++|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999997654
No 300
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.045 Score=58.04 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-----HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-----RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-----~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~ 76 (480)
.||+|+|+|..|.++|..|.+. |++|+++|.++. ..+.+.+... .+.......+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~~~~~~l~~~gi-----------------~~~~~~~~~~~~ 75 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKSEEELGEVSNELKELGV-----------------KLVLGENYLDKL 75 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCCCccchHHHHHHHhCCC-----------------EEEeCCCChHHh
Confidence 5899999999999999999998 999999998642 1122332100 111112222336
Q ss_pred ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH----------HHhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654 77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------IANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
.++|+||.+..-+. +-..+..+.+. +.+. .+..+|-+..|..-.||.. +..+|...
T Consensus 76 ~~~dlVV~Spgi~~-----------~~p~~~~a~~~~i~i~s~~e~~~~~-~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 76 DGFDVIFKTPSMRI-----------DSPELVKAKEEGAYITSEMEEFIKY-CPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred ccCCEEEECCCCCC-----------CchHHHHHHHcCCcEEechHHhhhh-cCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 78999888732222 21223332211 1122 2345777777877777766 56777754
No 301
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.33 E-value=0.026 Score=59.81 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=79.8
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
.|+|+|+. .+...+++.|.++|++|.+||......+....... .+ ..+...++
T Consensus 1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~---------------~g--~~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA---------------KG--KKIVGAYS 53 (467)
T ss_pred CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc---------------CC--CCceecCC
Confidence 37899985 48999999999999999999986544322211000 00 11333456
Q ss_pred HHHhc---ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654 406 AYQAA---KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW 472 (480)
Q Consensus 406 ~~~a~---~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~ 472 (480)
+++.+ +.+|+|++++...+.-+--.+.+...+.+..+|||+.|..... ++.+.|+.|.+.|...-++
T Consensus 54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 66644 5789999998885422222356666666666999999987543 3446799999988765544
No 302
>PLN02256 arogenate dehydrogenase
Probab=96.33 E-value=0.015 Score=58.13 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=73.9
Q ss_pred HHHHhHHHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhcccc
Q 011654 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKF 381 (480)
Q Consensus 302 ~N~~~~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+...||-..-.++.+++. +.+..+|+|+|+.. .+..++..|.+.|.+|.+||+.-. ......+
T Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~----- 77 (304)
T PLN02256 15 IDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL----- 77 (304)
T ss_pred ccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc-----
Confidence 334444333345555553 34677999999855 678899999999999999999742 2222221
Q ss_pred CCCCCCCCCCCCCCCCCceeeecCHHHhc-ccccEEEEEecccccccccHHHH-HHhcCCCCEEEEcCCC
Q 011654 382 DWDHPIHLQPMSPPASKQVNVVWDAYQAA-KDAHGVCILTEWDEFKTLDYQKI-FDNMRKPAYIFDGRNI 449 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ad~vvi~t~h~~~~~~~~~~~-~~~~~~~~~i~D~~~~ 449 (480)
++...++.++++ .++|+|+++|.-..+.++- .++ ...+++..+|+|.-.+
T Consensus 78 -----------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 78 -----------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred -----------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence 233456777766 4799999999977655422 233 3335556799999884
No 303
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.32 E-value=0.11 Score=52.18 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCCh-HHHHHhhhccccCCCCCC
Q 011654 310 FVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTE-DQIQRDLSMKKFDWDHPI 387 (480)
Q Consensus 310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~ 387 (480)
.++.....+ ..+.+.+|+|+|..- .+..+++.|...| .+|.++|+.... ..+...++
T Consensus 165 Av~~a~~~~-~~l~~~~V~ViGaG~----------iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------- 223 (311)
T cd05213 165 AVELAEKIF-GNLKGKKVLVIGAGE----------MGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------- 223 (311)
T ss_pred HHHHHHHHh-CCccCCEEEEECcHH----------HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC----------
Confidence 344444433 346899999999743 6788889998866 679999986543 23333322
Q ss_pred CCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011654 388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLREIGFIVYSI 465 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~~~g~~y~~i 465 (480)
......++.++++.++|+||.+|..+++.++..+.+....+++.+|+|..+ -++++-..-.|+.++-|
T Consensus 224 ----------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v 293 (311)
T cd05213 224 ----------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI 293 (311)
T ss_pred ----------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence 011112456788899999999999998733222222222234679999875 24444333346666544
No 304
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.024 Score=55.72 Aligned_cols=95 Identities=21% Similarity=0.389 Sum_probs=68.4
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Eec---CHHHHhcc
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FST---DIEKHVAE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~---d~~~a~~~ 78 (480)
||+|||.|.+|+--|....-- |-+|+..|+|.+++..+..- . .+++. ..+ ++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence 799999999999877665544 88999999999988776531 1 12322 122 35677899
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+|++|=+|-.|-.. .|- -+.+++.+.+++|.+||+-.
T Consensus 232 aDlvIgaVLIpgak-------aPk-----Lvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 232 ADLVIGAVLIPGAK-------APK-----LVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ccEEEEEEEecCCC-------Cce-----ehhHHHHHhcCCCcEEEEEE
Confidence 99999888665322 233 35678888899999998754
No 305
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.29 E-value=0.032 Score=50.27 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC
Q 011654 309 RFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH 388 (480)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
-+++.+. ..+-++++++|.|+|-|. .-..+|+..|.++|+.|.+.+...
T Consensus 22 aii~lL~-~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T--------------------- 70 (160)
T PF02882_consen 22 AIIELLE-YYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKT--------------------- 70 (160)
T ss_dssp HHHHHHH-HTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTS---------------------
T ss_pred HHHHHHH-hcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCC---------------------
Confidence 3334333 344578999999999643 457889999999999999977654
Q ss_pred CCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654 389 LQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD 451 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
.++++.++.||+||.++..+.|-.-+ ++ ++.++|||..--+.
T Consensus 71 ---------------~~l~~~~~~ADIVVsa~G~~~~i~~~--~i----k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 ---------------KNLQEITRRADIVVSAVGKPNLIKAD--WI----KPGAVVIDVGINYV 112 (160)
T ss_dssp ---------------SSHHHHHTTSSEEEE-SSSTT-B-GG--GS-----TTEEEEE--CEEE
T ss_pred ---------------CcccceeeeccEEeeeeccccccccc--cc----cCCcEEEecCCccc
Confidence 23566689999999999999974323 33 55679999865444
No 306
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.28 E-value=0.11 Score=50.15 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654 64 RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++|+-+|-. . .. ...++.+.++++.|.+|....|+|+-. +..+++.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~ 187 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED 187 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence 45778888888999999999996632 1 11 356889999999999999888998754 3344444
Q ss_pred cCCCCceeE-eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654 144 NSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.+. .|+.+ .|+|- .-||.. . ++.+. ..-.+++..+++.+|-++..
T Consensus 188 l~R-~DvgVsS~HPa-aVPgt~-----~--q~Yi~--egyAtEEqI~klveL~~sa~ 233 (340)
T TIGR01723 188 LGR-EDLNVTSYHPG-CVPEMK-----G--QVYIA--EGYASEEAVNKLYELGKKAR 233 (340)
T ss_pred hCc-ccCCeeccCCC-CCCCCC-----C--ceEee--cccCCHHHHHHHHHHHHHhC
Confidence 332 34444 35674 234432 1 12222 12236889999999988875
No 307
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.043 Score=58.44 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA 40 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
+||.|+|+|..|.++|..|.++ |++|+++|++.....
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~ 52 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARH 52 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHH
Confidence 5799999999999999999998 899999998766543
No 308
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.028 Score=55.69 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=61.0
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|=+. ....+++..|.++|+.|.+++...
T Consensus 152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------ 192 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------ 192 (296)
T ss_pred hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence 33468999999999433 578999999999999999986421
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN 448 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.++.++++.||+|+.++..+.+-+-+| +++..+|||.--
T Consensus 193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi 231 (296)
T PRK14188 193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI 231 (296)
T ss_pred ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence 135777899999999999998643222 456679999753
No 309
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.26 E-value=0.014 Score=58.58 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=71.1
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+||+..... . ..
T Consensus 144 ~l~gktvgIiG~G----------~IG~~va~~l~~fg~~V~~~~~~~~~~-~--------------------------~~ 186 (314)
T PRK06932 144 DVRGSTLGVFGKG----------CLGTEVGRLAQALGMKVLYAEHKGASV-C--------------------------RE 186 (314)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCcccc-c--------------------------cc
Confidence 3689999999984 467889999999999999999853211 0 00
Q ss_pred eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654 401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
. ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+ ++|.+.+
T Consensus 187 ~-~~~l~ell~~sDiv~l~~Plt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~Vde~AL 243 (314)
T PRK06932 187 G-YTPFEEVLKQADIVTLHCPLTETTQNLIN-AETLALMKPTAFLINTGRGPLVDEQAL 243 (314)
T ss_pred c-cCCHHHHHHhCCEEEEcCCCChHHhcccC-HHHHHhCCCCeEEEECCCccccCHHHH
Confidence 1 24789999999999999886 44444 45 455678998889999854 7776544
No 310
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.26 E-value=0.013 Score=59.57 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=43.1
Q ss_pred CcEEEEEc-CChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654 1 MVKICCIG-AGYVGGPTMAVIALKCPKI---EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV 76 (480)
Q Consensus 1 imkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+||| .|++|.-+...|+++ +| ++..+.++.+.-+.+. + .+ ..+.+.+.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~-----~--~g----------~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELS-----F--KG----------KELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeee-----e--CC----------ceeEEeeCCHHHH
Confidence 68999999 599999999999986 55 4566655433221111 0 00 1233322112235
Q ss_pred ccCcEEEEeccC
Q 011654 77 AEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||.|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 789999999874
No 311
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.26 E-value=0.026 Score=50.78 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=49.0
Q ss_pred cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-+ .+|.|++..|.++ |..|+..+.. |.++.+.++.||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence 589999987 6999999999998 8999998853 234556688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|--. . ...++++.+||+.++
T Consensus 82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence 999999865311 1 245788999987554
No 312
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.25 E-value=0.086 Score=52.36 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=66.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++++|+|+|.+|+-.|.++..- |..|++||.-.-.-+ ..+ -++.+. +.+|++..||+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~~-~~a-------------------~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMAL-AEA-------------------FGVQLV-SLEEILPKADF 203 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchHH-HHh-------------------ccceee-eHHHHHhhcCE
Confidence 4689999999999999999877 889999986321111 111 123443 46788999998
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|-+=+|- .|+++.+.+ +.-...+++|.-||+.|--..=.+..+.+.++.
T Consensus 204 itlH~PL-----------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 204 ITLHVPL-----------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEccCC-----------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8776653 233333322 223345788999998774333233445565654
No 313
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.23 E-value=0.05 Score=57.70 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=67.9
Q ss_pred cEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654 2 VKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|.++. ..+.+.+. ++.+. ....+.+.+
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~~~~~~ 66 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDAENIKD 66 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHCCC
Confidence 57999999999999 78899888 999999998643 22223221 12221 111233667
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|. +...++.+.+ ++ ...++...+|.+..|..-.||.. +..+|+..+
T Consensus 67 ~d~vv~spgi~~-----------~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 67 ADVVVYSSAIPD-----------DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCEEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 999888744332 2222333221 12 23333446787777876666655 677887654
No 314
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.071 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=29.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|..|..+|..|++. |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999988 99999999654
No 315
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.018 Score=56.58 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=55.0
Q ss_pred cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-|. +|.|+|..|..+ |..|++++.. |.++++.++.||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8899998752 234566688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.- +. ..+++++++||+..
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG 231 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG 231 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence 99999976521 11 15678999998644
No 316
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.18 E-value=0.017 Score=57.24 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccc
Q 011654 345 PAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~ 424 (480)
....+++.|.+.|.+|.+||+.....+...+ .+....+++.++++++|+|++++..++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence 6788999999999999999987543322221 123456788999999999999998854
Q ss_pred -ccccc--HHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011654 425 -FKTLD--YQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYS 464 (480)
Q Consensus 425 -~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
++++- .+.+...+++..+|||+..+-+. +.+++.|+.|..
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 44321 13555566666799999966643 234456888865
No 317
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.15 E-value=0.037 Score=52.53 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=29.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 66 566789887
No 318
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.14 E-value=0.022 Score=62.76 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=52.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH---H-HHhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI---E-KHVA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~---~-~a~~ 77 (480)
.+|-|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+++. |. .+++ + .-++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~------------GD---at~~~~L~~agi~ 463 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFY------------GD---ATRMDLLESAGAA 463 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEE------------Ee---CCCHHHHHhcCCC
Confidence 4689999999999999999998 89999999999999999864332221 10 1222 1 1246
Q ss_pred cCcEEEEeccC
Q 011654 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|.+++|+++
T Consensus 464 ~A~~vvv~~~d 474 (621)
T PRK03562 464 KAEVLINAIDD 474 (621)
T ss_pred cCCEEEEEeCC
Confidence 89999999764
No 319
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.13 E-value=0.048 Score=52.14 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=68.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDI----------SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~ 70 (480)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|. |.+.+..+++..-.+.. . .+ .+..
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~- 97 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI- 97 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence 5899999999999999999998 89998 5676 66665555432111100 0 00 0111
Q ss_pred CHHHHh-ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCc
Q 011654 71 DIEKHV-AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK 149 (480)
Q Consensus 71 d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.++.+ .+||+++-|.++..- + .+.+.++ + .-+|.++-..|-| ....+.|.+.+
T Consensus 98 ~~~~i~~~~~Dvlip~a~~~~i----------~----~~~~~~l----~--a~~I~egAN~~~t-~~a~~~L~~rG---- 152 (227)
T cd01076 98 TNEELLELDCDILIPAALENQI----------T----ADNADRI----K--AKIIVEAANGPTT-PEADEILHERG---- 152 (227)
T ss_pred CCccceeecccEEEecCccCcc----------C----HHHHhhc----e--eeEEEeCCCCCCC-HHHHHHHHHCC----
Confidence 111211 389999999765321 1 1122222 2 3344555554445 55667777764
Q ss_pred eeEeeCCcccc
Q 011654 150 YQILSNPEFLA 160 (480)
Q Consensus 150 ~~v~~~Pe~~~ 160 (480)
+.+.|.++.
T Consensus 153 --i~~~PD~~a 161 (227)
T cd01076 153 --VLVVPDILA 161 (227)
T ss_pred --CEEEChHHh
Confidence 567787654
No 320
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.11 E-value=0.18 Score=48.73 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654 64 RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++++-+|- .. .. ..+++.+.++++.|.+|....|+|+-. +..++++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPf--G~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~ 189 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPK--GG------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD 189 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCC--CC------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence 4577888888899999999999663 21 11 356889999999999999888998654 3444554
Q ss_pred cCCCCceeE-eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654 144 NSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.+. .|+.+ .|+|-- -||.. .+..+|- .-.+++.++++.+|-++..
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence 332 34444 356642 23322 1233442 2336888999999988875
No 321
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.09 E-value=0.04 Score=55.02 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=53.6
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH---HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRI---AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v---~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+|+|-|+ |++|+-+...|..+ ||.|.+.-|+++.- +.|.+- ++..+.+. +....+....++.+++.
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l------~~a~~~l~-l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKL------EGAKERLK-LFKADLLDEGSFDKAID 77 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhc------ccCcccce-EEeccccccchHHHHHh
Confidence 68999985 99999999999998 99999999998752 223221 00000000 00123444567888999
Q ss_pred cCcEEEEeccCCCCc
Q 011654 78 EADIVFVSVNTPTKT 92 (480)
Q Consensus 78 ~aDvVii~Vptp~~~ 92 (480)
+||.||=+- +|.+.
T Consensus 78 gcdgVfH~A-sp~~~ 91 (327)
T KOG1502|consen 78 GCDGVFHTA-SPVDF 91 (327)
T ss_pred CCCEEEEeC-ccCCC
Confidence 999987654 45443
No 322
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.07 E-value=0.035 Score=49.90 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=28.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
.+|.|||.|.+|...+..|.+. |++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC
Confidence 4799999999999999999998 999999963
No 323
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.024 Score=55.80 Aligned_cols=71 Identities=28% Similarity=0.389 Sum_probs=53.5
Q ss_pred cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-| .+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999988 8999988532 123455688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|--. + ...+++|.+||+..
T Consensus 203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG 229 (285)
T PRK14191 203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG 229 (285)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 13458899998643
No 324
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.057 Score=54.93 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=62.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHc--------CCCCeEE-EEeC----------CHHHHHHHHCCCCCCCCCChHHHHHhhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALK--------CPKIEVA-VVDI----------SVSRIAAWNGDQLPIYEPGLEDVVTQCR 62 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~l~~~~~ 62 (480)
+||+|+|+|.||..++..|.++ +.+.+|+ ++|+ +.+++..+.+....+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~-------- 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y-------- 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence 6899999999999999988754 1135655 4574 33333333321100000 0
Q ss_pred CCCEEEecCHHHHh--ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc-hHHHHHH
Q 011654 63 GRNLFFSTDIEKHV--AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK-TAEAIEK 139 (480)
Q Consensus 63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~ 139 (480)
.....+.++.+.+ .+.|+|+.|+|+..+.. +.+.+-+...+..|.-||..++-|.. +.++|.+
T Consensus 73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~-------------~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~ 138 (341)
T PRK06270 73 -PEGGGEISGLEVIRSVDADVVVEATPTNIETG-------------EPALSHCRKALERGKHVVTSNKGPLALAYKELKE 138 (341)
T ss_pred -ccccccCCHHHHhhccCCCEEEECCcCccccc-------------chHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHH
Confidence 0011234777766 36899999988643310 11223334445567777754433332 2344555
Q ss_pred HHHhc
Q 011654 140 ILTHN 144 (480)
Q Consensus 140 ~l~~~ 144 (480)
..++.
T Consensus 139 ~A~~~ 143 (341)
T PRK06270 139 LAKKN 143 (341)
T ss_pred HHHHc
Confidence 44443
No 325
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.17 Score=48.56 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=82.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAA-WNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHVA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~~ 77 (480)
|+|++||.|+|-..++..+...+ +..+++.+-.+...... ++. .+.+ +.++ .++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~-------------------~g~~~~~~n-~~~~~ 60 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA-------------------LGVKTVFTN-LEVLQ 60 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc-------------------CCceeeech-HHHHh
Confidence 79999999999999998887651 11234444332211111 221 1232 3334 67789
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch-HHHHHHHHHhcCCCCceeE-eeC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT-AEAIEKILTHNSREIKYQI-LSN 155 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v-~~~ 155 (480)
.+|++++||. |. .+.+++.++......+++|+. +-.|. ...+...+.... .-+.+ .-.
T Consensus 61 ~s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNt 120 (267)
T KOG3124|consen 61 ASDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNT 120 (267)
T ss_pred hccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCC
Confidence 9999999996 32 246677777776677887763 22333 333444443111 01112 235
Q ss_pred CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV 199 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
|+..++|.. ++..+. ....+..+.++++++..+
T Consensus 121 p~~v~eg~s---------v~~~g~--~~~~~D~~l~~~ll~~vG 153 (267)
T KOG3124|consen 121 PSVVGEGAS---------VYAIGC--HATNEDLELVEELLSAVG 153 (267)
T ss_pred hhhhhcCcE---------EEeeCC--CcchhhHHHHHHHHHhcC
Confidence 666676654 222221 123445678888998875
No 326
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.01 E-value=0.023 Score=57.65 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=30.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
.+|.|||+|.+|..+|..|++. |+ +++++|.|.-
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcc
Confidence 4799999999999999999998 87 8999998863
No 327
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.00 E-value=0.034 Score=58.10 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=69.3
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC--C-CCCCceee
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS--P-PASKQVNV 402 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 402 (480)
+|+|+|+.| ....++..|.+.|.+|.+||+.....+. +........+| .++.. . .....++.
T Consensus 2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~~---l~~g~~~~~e~--~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVDK---LNKGKSPIYEP--GLDELLAKALAAGRLRA 66 (411)
T ss_pred EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHHH---hhcCCCCCCCC--CHHHHHHHhhhcCCeEE
Confidence 799999988 8899999999999999999986543221 21100000000 00000 0 00123667
Q ss_pred ecCHHHhcccccEEEEEeccccc--cccc-------HHHHHHhcCCCCEEEEcCCCC
Q 011654 403 VWDAYQAAKDAHGVCILTEWDEF--KTLD-------YQKIFDNMRKPAYIFDGRNIL 450 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~h~~~--~~~~-------~~~~~~~~~~~~~i~D~~~~~ 450 (480)
.++..++++++|+++++++.+.- ..+| .+.+...+++..+|+|...+-
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 78888999999999999998742 1122 234555666677999977543
No 328
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.99 E-value=0.023 Score=56.14 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=63.5
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. .+..++..|.++|.+|.+||+.....+.....+ .+....+
T Consensus 2 ~I~IIG~G~----------mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~ 50 (279)
T PRK07417 2 KIGIVGLGL----------IGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST 50 (279)
T ss_pred eEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence 699999754 778899999999999999998643222111111 1111222
Q ss_pred HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654 406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
..++++++|+||++++-+...+. .+++...+++..+|.|..++-
T Consensus 51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence 33568999999999997765542 456767666667899987754
No 329
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.98 E-value=0.0091 Score=59.75 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-C---CC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEec
Q 011654 12 VGGPTMAVIALKCPKIEVAVVDISVSRIAAWN-G---DQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSV 86 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~-~---~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~V 86 (480)
||..+|..+..+ |++|++.|.|..-++.-+ + .. ....-..++..-......+++-+.|+.+ ++++|.++-+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 789999999998 999999999976554211 1 00 0000000000000001123455667666 89999995554
Q ss_pred cCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccch
Q 011654 87 NTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKT 133 (480)
Q Consensus 87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt 133 (480)
..|++-..+++.+|.+..++..+. .+.|+.+++.
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~ 112 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINV 112 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHH
Confidence 346777889999999999998866 5666666653
No 330
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.98 E-value=0.06 Score=56.79 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=38.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+.+
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 6899999999999999999998 9999999999999988875
No 331
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.084 Score=55.97 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=32.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW 42 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+||.|||+|..|.+.|..|.+. |++|+++|..+.....+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHH
Confidence 4799999999999998888888 99999999876544333
No 332
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.96 E-value=0.04 Score=57.65 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=69.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec--CHHHHhcc
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST--DIEKHVAE 78 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~--d~~~a~~~ 78 (480)
.|||+|+|+|.-|.++|..|.+. |++|+++|.++.. +..... +..+ .++.+.. ...+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~------------~~i~~~~g~~~~~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLL------------EGIEVELGSHDDEDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhc------------cCceeecCccchhcccc
Confidence 37999999999999999999998 9999999977654 111100 0001 1111111 11133678
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH---------HHhhC-CCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM---------IANVS-NSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---------i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+|+.+=.-| ++...++.+... +.-.. .+..+|.++.|..-+||-. +..+|++.+
T Consensus 70 ~d~vV~SPGi~-----------~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 70 FDLVVKSPGIP-----------PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCEEEECCCCC-----------CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 99998874333 333344444321 11122 2445787887876666554 667777654
No 333
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.92 E-value=0.015 Score=53.27 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=29.3
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
||.|||+|.+|..+|..|++. |. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCE
Confidence 689999999999999999998 77 599999886
No 334
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.91 E-value=0.064 Score=52.72 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=61.4
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=|- .-..+|+..|.++|+.|++.....
T Consensus 151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 191 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------ 191 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999643 567889999999999999876532
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++.++.| +..+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvI~AvG~~~~--i~~~~v----k~GavVIDvG 229 (284)
T PRK14170 192 ------KDLPQVAKEADILVVATGLAKF--VKKDYI----KPGAIVIDVG 229 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2456778999999999999998 455455 4457999975
No 335
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.064 Score=52.70 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=60.9
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+++..|..+|+.|++.....
T Consensus 150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 190 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------ 190 (282)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34467999999999543 466889999999999999865432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++.++.| ++.+.+ ++.++|||.-
T Consensus 191 ------~~l~~~~~~ADIvI~AvG~p~~--i~~~~v----k~GavVIDvG 228 (282)
T PRK14169 191 ------RNLKQLTKEADILVVAVGVPHF--IGADAV----KPGAVVIDVG 228 (282)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCcEEEEee
Confidence 2456778999999999999998 455445 4456999975
No 336
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.11 Score=54.77 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-e--cCHHHHhc
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-S--TDIEKHVA 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t--~d~~~a~~ 77 (480)
.|.|||+|..|.++|..|.+. |++|+++|..+. ..+.+.+. ..++.+ . .+. +.+.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~~~~~~~~l~~~-----------------~~g~~~~~~~~~~-~~~~ 67 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSREQPPGLDTLARE-----------------FPDVELRCGGFDC-ELLV 67 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCCCchhHHHHHhh-----------------cCCcEEEeCCCCh-HHhc
Confidence 489999999999999999888 999999997643 11223220 001222 1 232 3367
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|. |-..+..+-+ ++ ...+ +..+|.+..|..-+||.. +..+|.+.+
T Consensus 68 ~~d~vV~sp~i~~-----------~~p~~~~a~~~~i~i~~~~el~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 68 QASEIIISPGLAL-----------DTPALRAAAAMGIEVIGDIELFAREA-KAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred CCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 8998877632221 2122333221 12 2223 446777777876666655 677887653
No 337
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.86 E-value=0.042 Score=55.32 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=66.9
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++|+|+|+. +.+..++..|...|.+|.++++..... ..... .+
T Consensus 14 ~L~gktIgIIG~G----------smG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G 61 (330)
T PRK05479 14 LIKGKKVAIIGYG----------SQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG 61 (330)
T ss_pred hhCCCEEEEEeeH----------HHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence 4578999999984 588999999999999999987753322 11111 12
Q ss_pred eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+.. .+..++++.+|+|+++++-...+++-.+.+...+++.++|+=+.+
T Consensus 62 ~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G 109 (330)
T PRK05479 62 FEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHG 109 (330)
T ss_pred Cee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 333 378999999999999998766554433567777776556654443
No 338
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.85 E-value=0.049 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++++|+|.|.+|.+++..|...+ +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 58999999999999999999862 467888775
No 339
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.84 E-value=0.059 Score=56.71 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEC--CCCChHHHHHhhhccccCCCCCCCC
Q 011654 312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYD--PQVTEDQIQRDLSMKKFDWDHPIHL 389 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+.+++.-+..+.+++|+|+|... -...+++.|...|++|.++| |........
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~---------------- 295 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQAAM---------------- 295 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----------------
Confidence 33444434568999999999754 77889999999999999994 433211111
Q ss_pred CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
.+..+ .+++++++.+|+|+++|..+.+ ++. +..+.|++.++++++-..
T Consensus 296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence 11222 3678899999999999876543 343 445788988899998555
No 340
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.81 E-value=0.011 Score=55.89 Aligned_cols=69 Identities=17% Similarity=0.394 Sum_probs=44.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+ +...+++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999986432224888775 79887755321111 11 111234455443 5
Q ss_pred CcEEEEeccC
Q 011654 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999885
No 341
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.063 Score=52.83 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=62.2
Q ss_pred HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-++++++|.|+|=|- .-..+++..|.++|+.|++.+...
T Consensus 151 ~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t----------------------------- 192 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT----------------------------- 192 (284)
T ss_pred HcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc-----------------------------
Confidence 344468999999999644 567889999999999999875321
Q ss_pred CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+.+ ++.++|||.-
T Consensus 193 -------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG 230 (284)
T PRK14190 193 -------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG 230 (284)
T ss_pred -------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2466778999999999999998 555555 4457999984
No 342
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.078 Score=52.23 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=61.4
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+++..|.++|+.|++.....
T Consensus 149 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T------------------------------ 189 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT------------------------------ 189 (287)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999644 567899999999999999865432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 190 ------~~l~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDVG 227 (287)
T PRK14173 190 ------QDLPAVTRRADVLVVAVGRPHLI--TPEMV----RPGAVVVDVG 227 (287)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence 24567789999999999999985 44444 4457999975
No 343
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.78 E-value=0.14 Score=54.05 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ec-CHHHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--ST-DIEKH 75 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~-d~~~a 75 (480)
+++|.|||+|..|.+.++.|.+...|++|+++|.++.. .+.+.+ ++++ .. +. +.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~--------------------g~~~~~g~~~~-~~ 65 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE--------------------DVELHSGGWNL-EW 65 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc--------------------CCEEEeCCCCh-HH
Confidence 46799999999999999999876423899999976421 122221 1222 21 32 33
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+.++|+||++-.-|. +...++.+.+ ++...+.+..+|-+..|..-.||.. +..+|...+
T Consensus 66 ~~~~d~vV~SpgI~~-----------~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 66 LLEADLVVTNPGIAL-----------ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred hccCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 678998877643332 2223333322 2221122356777777877666665 567777653
No 344
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.76 Score=45.59 Aligned_cols=228 Identities=12% Similarity=0.171 Sum_probs=132.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH----HHHHHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS----RIAAWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIE 73 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~----~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~ 73 (480)
|.++-++|+|.+..-+|.-+..++ ..++=.+++-.. -.++++.+. .++..+-.+..+. ..|+.. +..+++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~-ql~l~~q~eahr~-leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTP-QLYLQGQGEAHRQ-LEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCC-eEEEEeccHHHHh-hcCceehhHHHhhHH
Confidence 457899999999999999998873 456666765432 233444332 2433333333222 234442 455777
Q ss_pred HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHH-hhCCC-CCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654 74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-NVSNS-NKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-+.+|+|||+. +..+++++|- +.++. .++|.+++|+..+. .+...+.+.+ .+..
T Consensus 81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE 141 (431)
T ss_pred HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence 7777889999999863 2355666652 22332 35666666765442 2333333332 3444
Q ss_pred EeeCCccc---------cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhh------
Q 011654 152 ILSNPEFL---------AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSK------ 216 (480)
Q Consensus 152 v~~~Pe~~---------~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|++-.... .|-++..... ..+|.+|+.-. +....+.+..++....- ....+.++..||.--
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 43211111 1112211111 12677886532 45678889999998742 334556777777431
Q ss_pred --hH----------------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654 217 --LA----------------------------ANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKD 254 (480)
Q Consensus 217 --l~----------------------------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++ .-+...-.-..+.|++++..++|+..-.++..++.+
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 00 112333445688999999999999999999999876
No 345
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.77 E-value=0.032 Score=50.10 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=63.1
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|- .+-+..++..|..+|.+|.+|.+.-..-+..+... . .....+ . .....++...++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~---~-n~~~~~---~-~~l~~~i~~t~d 62 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETR---Q-NPKYLP---G-IKLPENIKATTD 62 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT---S-ETTTST---T-SBEETTEEEESS
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC---C-CCCCCC---C-cccCcccccccC
Confidence 6889986 45889999999999999999999653222111111 0 000000 0 122356778899
Q ss_pred HHHhcccccEEEEEecccccccccHHHHHHhcCCCC-EEEEcCCC
Q 011654 406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPA-YIFDGRNI 449 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~-~i~D~~~~ 449 (480)
++++++++|++++.++-..+++ -.+++....+... +|+=++++
T Consensus 63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999887765 3345554443333 44433444
No 346
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.74 E-value=0.1 Score=53.28 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=33.7
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+-.++.+... ...+|++.|+++++++..++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 689999999999876655555 23689999999999998876
No 347
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.73 E-value=0.087 Score=51.73 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=60.5
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+-++++++|.|+|=|. .-..+|+..|.++++.|.+.....
T Consensus 152 ~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T------------------------------- 191 (282)
T PRK14182 152 RVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT------------------------------- 191 (282)
T ss_pred CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence 3467899999999643 567889999999999999976542
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+.+ ++.++|||.-
T Consensus 192 -----~nl~~~~~~ADIvI~AvGk~~~--i~~~~i----k~gaiVIDvG 229 (282)
T PRK14182 192 -----ADLAGEVGRADILVAAIGKAEL--VKGAWV----KEGAVVIDVG 229 (282)
T ss_pred -----CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEee
Confidence 2356678999999999999997 444444 4456999975
No 348
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.73 E-value=0.084 Score=52.00 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|-|. .-..+|+..|.++|+.|.+.+-.
T Consensus 152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~------------------------------- 191 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK------------------------------- 191 (285)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence 33467999999999754 45789999999999999975321
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.+++.+.| ++. +.+++.++|||.-
T Consensus 192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG 230 (285)
T PRK14189 192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG 230 (285)
T ss_pred -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence 12466778999999999999987 444 3456667999975
No 349
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.71 E-value=0.018 Score=53.34 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=62.9
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC---CCCCCceee
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS---PPASKQVNV 402 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 402 (480)
||+|+|+.| -.+.++-.|.++|.+|.+||..-...+. +........+| .++.. .....++.+
T Consensus 2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~v~~---l~~g~~p~~E~--~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEKVEA---LNNGELPIYEP--GLDELLKENVSAGRLRA 66 (185)
T ss_dssp EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHHHHH---HHTTSSSS-CT--THHHHHHHHHHTTSEEE
T ss_pred EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHHHHH---Hhhcccccccc--chhhhhccccccccchh
Confidence 899999999 7799999999999999999996543222 22111111111 00000 000246778
Q ss_pred ecCHHHhcccccEEEEEeccccccc--ccHH-------HHHHhcCCCCEEEEcCCCCChH
Q 011654 403 VWDAYQAAKDAHGVCILTEWDEFKT--LDYQ-------KIFDNMRKPAYIFDGRNILDVE 453 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~h~~~~~--~~~~-------~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
.++.+++++++|+++|+++-|.-.+ .|.. .+...+++.. +|=.+..+.+.
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~-lvV~~STvppG 125 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGD-LVVIESTVPPG 125 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCE-EEEESSSSSTT
T ss_pred hhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcc-eEEEccEEEEe
Confidence 8899999999999999988765432 3433 5555556654 44455555543
No 350
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.70 E-value=0.084 Score=52.28 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=61.0
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+|+..|.++|+.|.+.....
T Consensus 152 ~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 192 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT------------------------------ 192 (297)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467889999999999999875432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.+++.+.| ++.+++ ++.++|||.-
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDvG 230 (297)
T PRK14186 193 ------QDLASITREADILVAAAGRPNL--IGAEMV----KPGAVVVDVG 230 (297)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence 2456678999999999999998 455455 3456999975
No 351
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.69 E-value=0.046 Score=57.36 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=45.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcC------C--CCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKC------P--KIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~ 72 (480)
+||+|||+|.||..++..|.++. . +.+| .++|+++++.+.+. . ....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence 58999999999999998886531 1 2344 45688876532111 0 123467888
Q ss_pred HHHhc--cCcEEEEeccC
Q 011654 73 EKHVA--EADIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~--~aDvVii~Vpt 88 (480)
++.+. +.|+|+.|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88774 57999999764
No 352
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.084 Score=51.88 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=61.0
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=|. .-..+|+..|.++|+.|.+.+-..
T Consensus 152 y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T------------------------------ 192 (282)
T PRK14180 152 YGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT------------------------------ 192 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC------------------------------
Confidence 44578999999999644 567889999999999999875432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+-++.||+||.++.++.| +..+.+ ++.++|||.-
T Consensus 193 ------~dl~~~~k~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG 230 (282)
T PRK14180 193 ------TDLKSHTTKADILIVAVGKPNF--ITADMV----KEGAVVIDVG 230 (282)
T ss_pred ------CCHHHHhhhcCEEEEccCCcCc--CCHHHc----CCCcEEEEec
Confidence 2455668999999999999998 555455 4457999974
No 353
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.14 Score=54.18 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=29.9
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||+|..|.+.|..|+++ |++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCc
Confidence 799999999999999888888 999999998653
No 354
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.089 Score=51.60 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+|+..|..+|+.|.+.+-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------ 192 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------ 192 (278)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999643 467889999999999999876432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.+++||+||.++..+.| ++.+.+ ++.++|||.
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDv 229 (278)
T PRK14172 193 ------KNLKEVCKKADILVVAIGRPKF--IDEEYV----KEGAIVIDV 229 (278)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCcEEEEe
Confidence 2456778999999999999998 555455 445799998
No 355
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.67 E-value=0.051 Score=53.93 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=76.3
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+-.+.+++++|+|+.- -.-+++..+..-|..|..|||+.+.+.... .
T Consensus 141 G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~a-----------------------~ 187 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAEA-----------------------F 187 (406)
T ss_pred eeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHHh-----------------------c
Confidence 4467899999999854 346788888999999999999998765432 2
Q ss_pred ceeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVE 453 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
++++. +++|.+..||-+.++++- |+-+.+=-.+-+..|++...||.+.+ ++|..
T Consensus 188 gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 188 GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 34443 789999999999999887 55555433455678888878888754 66643
No 356
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.66 E-value=0.055 Score=57.19 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=76.9
Q ss_pred HHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhccc---ccEEEEEecc
Q 011654 346 AIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKD---AHGVCILTEW 422 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---ad~vvi~t~h 422 (480)
...+++.|.++|++|.+||-.....+...... +...++..++|++++++. +|+|+++...
T Consensus 2 G~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~-----------------g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 2 GKNLALNIASHGYTVAVYNRTPEKTDEFLAEE-----------------GKGKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred cHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-----------------CCCCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 35688999999999999999755433222100 001236677899998875 8999999988
Q ss_pred cccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654 423 DEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW 472 (480)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~ 472 (480)
.+--+--++.+...+.+..+|||+.|...+. ++++.|+.|.+.|...-++
T Consensus 65 g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 65 GAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred chHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 7533322356777777667999999987643 3446799999998765444
No 357
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.66 E-value=0.054 Score=53.54 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=42.3
Q ss_pred cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|. +|.|+|..|... |.+|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12344468899
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998643
No 358
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.19 Score=52.97 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=30.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|+|.+|.++|..|++. |++|+++|.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4789999999999999999998 99999999865
No 359
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.13 Score=55.20 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|+|+|..|.++|..|.+. |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999988 99999999754
No 360
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.63 E-value=0.062 Score=54.85 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=47.8
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC-ChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP-GLEDVVTQCRGRNLFFS-TDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~l~~l~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
+||+|+| .|++|..+...|.++ |..+++++..+++...+......++.+. ++.. . ...+.+. .++++ +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~---~--~~~~~v~~~~~~~-~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPE---E--VADMEVVSTDPEA-VDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCcccccccccccccccc---c--ccceEEEeCCHHH-hcC
Confidence 6899998 899999999999875 5679999866654432211111111000 0000 0 0123332 34444 689
Q ss_pred CcEEEEeccC
Q 011654 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 77 ~DvVf~a~p~ 86 (349)
T PRK08664 77 VDIVFSALPS 86 (349)
T ss_pred CCEEEEeCCh
Confidence 9999999874
No 361
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.62 E-value=0.091 Score=51.63 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=|- .-..+|+..|.++|+.|++..-..
T Consensus 151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 191 (282)
T PRK14166 151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999644 466889999999999999765432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| ++...+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvIsAvGkp~~--i~~~~v----k~GavVIDvG 229 (282)
T PRK14166 192 ------KDLSLYTRQADLIIVAAGCVNL--LRSDMV----KEGVIVVDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCCEEEEec
Confidence 2456778999999999999998 454444 4457999975
No 362
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.62 E-value=0.093 Score=49.35 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=45.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-C-HHHHhcc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-D-IEKHVAE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d-~~~a~~~ 78 (480)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .++.+.+. ++++... + ..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHHHhCC
Confidence 4799999999999999999998 899999987542 23333221 2232211 1 1223788
Q ss_pred CcEEEEeccC
Q 011654 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+++||+|++.
T Consensus 70 ~~lVi~at~d 79 (205)
T TIGR01470 70 AFLVIAATDD 79 (205)
T ss_pred cEEEEECCCC
Confidence 9999988543
No 363
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.60 E-value=0.1 Score=48.32 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=63.5
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++++++|.|+|=|- .-..+|+..|.++|+.|.+.|-..-..- ... ...+|... ...
T Consensus 59 ~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~~-~~~---------~~~~hs~t---~~~-- 114 (197)
T cd01079 59 RLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQVF-TRG---------ESIRHEKH---HVT-- 114 (197)
T ss_pred CCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCccccc-ccc---------cccccccc---ccc--
Confidence 67999999999643 5678899999999999999974332110 000 00001000 000
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
....++.+.++.||+||.++..++|+ +..+++ ++.++|||.---
T Consensus 115 ~~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi~ 158 (197)
T cd01079 115 DEEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFASI 158 (197)
T ss_pred chhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCCC
Confidence 00112567889999999999999984 344444 445799997543
No 364
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.58 E-value=0.086 Score=46.42 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=46.5
Q ss_pred EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|+|- ..+|.++|..|.+. |..|+..+.+ |.++++.+++||+
T Consensus 30 ~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~ADI 74 (140)
T cd05212 30 KVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDADV 74 (140)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCCE
Confidence 5677763 55677777777766 6677766642 1256677899999
Q ss_pred EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
|+.+++.+. ..+ .+.+++|++|++.
T Consensus 75 VvsAtg~~~---------~i~-----------~~~ikpGa~Vidv 99 (140)
T cd05212 75 VVVGSPKPE---------KVP-----------TEWIKPGATVINC 99 (140)
T ss_pred EEEecCCCC---------ccC-----------HHHcCCCCEEEEc
Confidence 999998652 111 2347899998854
No 365
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.58 E-value=0.056 Score=53.21 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=54.2
Q ss_pred cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+. +|.|+|..|..+ |..|++++.. |.++.+..++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8899998841 235566678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-. . ...+++|++||+.+
T Consensus 210 Ivv~AvG~p~~i---------~-----------~~~vk~gavVIDvG 236 (287)
T PRK14176 210 ILVVATGVKHLI---------K-----------ADMVKEGAVIFDVG 236 (287)
T ss_pred EEEEccCCcccc---------C-----------HHHcCCCcEEEEec
Confidence 999998765211 1 12578899998643
No 366
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.57 E-value=0.074 Score=49.21 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=57.5
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cC----HHH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TD----IEK 74 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d----~~~ 74 (480)
.+|+|||- ..+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-+.| .+ +.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 47999995 56799999999988 89999999764322 111100 0 00111 12 556
Q ss_pred HhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 75 HVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.++.||+||.+++.|-- ... ...+++|++||+.++
T Consensus 123 ~~~~ADIVIsAvG~~~~--------~i~-----------~d~ik~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPSPNY--------KVP-----------TELLKDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCCCCC--------ccC-----------HHHcCCCcEEEEcCC
Confidence 68999999999987521 011 234678999997554
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.082 Score=52.38 Aligned_cols=121 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhh-h---ccccCCCCCCCCCCCCCCCCCce
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDL-S---MKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++|+|+|+.. ....++..|.++|.+|.+||+.....+..... . ..+.....-. .........++
T Consensus 2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~i 69 (288)
T PRK09260 2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLT--EAARQAALARL 69 (288)
T ss_pred cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHhCe
Confidence 5899999865 88999999999999999999975442221110 0 0000000000 00000011346
Q ss_pred eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
+.+++++++++++|+|+.++.-+. .+..-++++.+.+++..+|......+++..+.+
T Consensus 70 ~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~ 127 (288)
T PRK09260 70 SYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS 127 (288)
T ss_pred EEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 677889999999999999887653 232233456666666555534444466665543
No 368
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.54 E-value=0.03 Score=56.39 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=54.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654 4 ICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|.+|...+..+... ++.+|++ .|.+++....+... +...+. ...+........++....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 69999999999999998765 5778765 67777754444321 111111 00000000112346667788998899999
Q ss_pred EEEeccCCC
Q 011654 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999987644
No 369
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.54 E-value=0.027 Score=46.13 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc--
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
.+|+|+|+|..|..++..+.+. .|+. +.++|.+++++..-. +++.+..+.+++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 3799999999999998655543 2665 567899987542111 245666666665555
Q ss_pred CcEEEEeccC
Q 011654 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|+-++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999984
No 370
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.053 Score=53.19 Aligned_cols=71 Identities=28% Similarity=0.521 Sum_probs=53.3
Q ss_pred cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.|+|..|.++ |..|+..... |.++.+.++.||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 479999988 8999999999988 8899876531 234556688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-- .. ..++++|.+||+.+
T Consensus 203 IvV~AvGkp~~---------i~-----------~~~vk~gavvIDvG 229 (281)
T PRK14183 203 IVIVGVGKPNL---------IT-----------EDMVKEGAIVIDIG 229 (281)
T ss_pred EEEEecCcccc---------cC-----------HHHcCCCcEEEEee
Confidence 99999986521 11 23467899998643
No 371
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.52 E-value=0.018 Score=60.00 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=31.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999864
No 372
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.11 Score=50.96 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=61.6
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=|- .-..+|+..|.++|+.|++.+...
T Consensus 153 y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 193 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT------------------------------ 193 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34478999999999643 567889999999999999977532
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+.+ ++.++|||.-
T Consensus 194 ------~~l~~~~~~ADIvIsAvGk~~~--i~~~~i----k~gavVIDvG 231 (284)
T PRK14177 194 ------QNLPSIVRQADIIVGAVGKPEF--IKADWI----SEGAVLLDAG 231 (284)
T ss_pred ------CCHHHHHhhCCEEEEeCCCcCc--cCHHHc----CCCCEEEEec
Confidence 2456678999999999999998 454444 4457999974
No 373
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.50 E-value=0.042 Score=52.01 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=29.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
.+|+|||+|.+|..+|..|++. |. +++++|.|.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCE
Confidence 4799999999999999999998 65 599999884
No 374
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.49 E-value=0.11 Score=51.52 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=77.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC-----CCCCCc
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS-----PPASKQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 399 (480)
++|+|+|... ....++..|..+|.+|.+||+.....+.........+ +.-.+..... .....+
T Consensus 4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLA--DRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHH--HHHHHcCCCChhhhHHHHHcC
Confidence 5899999865 8889999999999999999986543211110000000 0000000000 011246
Q ss_pred eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhc---CcEEEEe
Q 011654 400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREI---GFIVYSI 465 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~---g~~y~~i 465 (480)
++..++.+++++++|.|+.++.-+ +++.--++++....++..+|.+..+.+....+.+. .-++.|+
T Consensus 72 i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~ 141 (287)
T PRK08293 72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL 141 (287)
T ss_pred eEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence 777889999999999999998754 23433345666666666566677777766554432 2345554
No 375
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.48 E-value=0.024 Score=57.60 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=34.3
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW 42 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||||.|.|+ |++|..++..|.+. .|++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence 789999996 99999999999874 169999999987655444
No 376
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.47 E-value=0.11 Score=47.27 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=60.8
Q ss_pred HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.+..++++++|+|+|.+- .-...+++.|.++|++|.+.+...
T Consensus 37 ~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~----------------------------- 78 (168)
T cd01080 37 RYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT----------------------------- 78 (168)
T ss_pred HcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc-----------------------------
Confidence 344578999999999743 236779999999999998877532
Q ss_pred CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
+++.+.+++||+||.+|.-+++ ++.+.+ ++..+|||.-.-
T Consensus 79 -------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~p 118 (168)
T cd01080 79 -------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGIN 118 (168)
T ss_pred -------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccCC
Confidence 2346678999999999998874 555544 445699998543
No 377
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.46 E-value=0.026 Score=44.37 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.4
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||.|++|.-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998654
No 378
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.12 Score=51.15 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=|- .-..+|+..|.++|+.|++.+-..
T Consensus 154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------ 194 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------ 194 (294)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence 34468999999999643 467889999999999999876532
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.+++||+||.++..+.| ++.+++. +.++|||.
T Consensus 195 ------~~l~~~~~~ADIvVsAvGkp~~--i~~~~ik----~gaiVIDV 231 (294)
T PRK14187 195 ------RDLADYCSKADILVAAVGIPNF--VKYSWIK----KGAIVIDV 231 (294)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHcC----CCCEEEEe
Confidence 2456678999999999999998 5555553 45699997
No 379
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.44 E-value=0.058 Score=53.71 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=39.8
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|+| .||.|.-+...|+.+ |..++..+.-+.. + . ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence 4899999 599999999999987 6666665542211 0 0 013344457899
Q ss_pred EEEEeccC
Q 011654 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999874
No 380
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.19 Score=52.98 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=67.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cC-HHHHhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TD-IEKHVA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d-~~~a~~ 77 (480)
++|.|+|.|..|.+.|..|++. |++|+++|.++.. .+.+.+- ..++++. .. ......
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~~~~~~~l~~~-----------------~~gi~~~~g~~~~~~~~ 66 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELKPERVAQIGKM-----------------FDGLVFYTGRLKDALDN 66 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCchhHHHHhhc-----------------cCCcEEEeCCCCHHHHh
Confidence 5899999999999999999988 9999999976532 2222210 0022221 11 222246
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCC--CCCEEEEecCCccchHHH-HHHHHHhc
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSN--SNKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~--~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
++|+||.+..-|.+ .| .++.+.+ -+...++ +..+|.+..|..-.||.. +..+|+..
T Consensus 67 ~~d~vv~spgi~~~--------~p---~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 67 GFDILALSPGISER--------QP---DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCEEEECCCCCCC--------CH---HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 89999988554422 22 2333321 1123332 246777777776666655 66777765
Q ss_pred C
Q 011654 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 136 g 136 (445)
T PRK04308 136 G 136 (445)
T ss_pred C
Confidence 3
No 381
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.42 E-value=0.12 Score=52.14 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=32.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|-+|. ||..++++. |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999997777 455666532 8999999999999987765
No 382
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.41 E-value=0.029 Score=51.11 Aligned_cols=68 Identities=24% Similarity=0.544 Sum_probs=45.0
Q ss_pred cEEEEEcCChhHHHHHH-HHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654 2 VKICCIGAGYVGGPTMA-VIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~-~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-- 77 (480)
.++.+||+|.+|.+++. .+.++. |++++ ++|++++.+-.-..+ .++++ + ++++.-++
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~--~---------------d~le~~v~~~ 145 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD--L---------------DDLEKFVKKN 145 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec--h---------------HHHHHHHHhc
Confidence 58999999999999986 345332 67654 699999976433322 33321 2 23333333
Q ss_pred cCcEEEEeccC
Q 011654 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+.|+.++|||.
T Consensus 146 dv~iaiLtVPa 156 (211)
T COG2344 146 DVEIAILTVPA 156 (211)
T ss_pred CccEEEEEccH
Confidence 78899999984
No 383
>PRK01581 speE spermidine synthase; Validated
Probab=95.40 E-value=0.88 Score=46.42 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=77.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEE-ecCHHHHh---
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFF-STDIEKHV--- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~-t~d~~~a~--- 76 (480)
.+|.|||+|. |..+. .+.+..+.-+|+++|+|++.++..++- .. +.++... ....++++ ..|..+-+
T Consensus 152 krVLIIGgGd-G~tlr-elLk~~~v~~It~VEIDpeVIelAr~~-~~-----L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 152 KRVLILGGGD-GLALR-EVLKYETVLHVDLVDLDGSMINMARNV-PE-----LVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CEEEEECCCH-HHHHH-HHHhcCCCCeEEEEeCCHHHHHHHHhc-cc-----cchhccccCCCCceEEEECcHHHHHHhc
Confidence 4799999984 44444 444442236899999999998877741 00 0000000 01234433 34444322
Q ss_pred -ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH---HHHHHHHhcCCCCceeE
Q 011654 77 -AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE---AIEKILTHNSREIKYQI 152 (480)
Q Consensus 77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~---~l~~~l~~~~~g~~~~v 152 (480)
...|+||+-+|.|... ...--+-.+.++.+.+.|+++-+++..++.+..... .+...+++.+.....+.
T Consensus 224 ~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 224 SSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred CCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence 2469999998766431 111122256778888999999988776654432222 23445555432222334
Q ss_pred eeCCcc
Q 011654 153 LSNPEF 158 (480)
Q Consensus 153 ~~~Pe~ 158 (480)
.+-|.+
T Consensus 297 t~vPsy 302 (374)
T PRK01581 297 TIVPSF 302 (374)
T ss_pred EecCCC
Confidence 456665
No 384
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.39 E-value=0.02 Score=59.56 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|+|||.|.+|+++|..|+++ |++|+++|+++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 7999999999999999999998 999999999753
No 385
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.26 Score=51.81 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.1
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|||+|..|.+.+..|++. |++|+++|.++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999988887 99999999754
No 386
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.36 E-value=0.18 Score=52.96 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=65.8
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HH----HHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCHHHH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IA----AWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDIEKH 75 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~~~a 75 (480)
||.|||+|..|.++|..|.++ |++|++.|..+.. .. .+.. ..++++. .+ .+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~~~~~~~~~~~~~------------------~~gi~~~~g~~-~~~ 59 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPNEELEPSMGQLRL------------------NEGSVLHTGLH-LED 59 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCCccchhHHHHHhh------------------ccCcEEEecCc-hHH
Confidence 589999999999999999998 9999999976431 11 1110 0112221 23 234
Q ss_pred hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------H-HHhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654 76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------M-IANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~-i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
+.++|+||.+-.-|.+ .|. +..+-+ + +...+ +..+|.+..|..-.||.. +..+|+..
T Consensus 60 ~~~~d~vv~sp~i~~~--------~p~---~~~a~~~~i~i~~~~e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 60 LNNADLVVKSPGIPPD--------HPL---VQAAAKRGIPVVGDIELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred hccCCEEEECCCCCCC--------CHH---HHHHHHCCCcEEEHHHHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 6789988777443321 222 222221 1 22333 456777777776666655 67788765
Q ss_pred C
Q 011654 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 128 g 128 (433)
T TIGR01087 128 G 128 (433)
T ss_pred C
Confidence 3
No 387
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.35 E-value=0.14 Score=50.47 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG--DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP 395 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
.+-++++++|.|+|=|- .-..+|+..|.+ +++.|++..-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T---------------------------- 194 (284)
T PRK14193 152 YDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT---------------------------- 194 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC----------------------------
Confidence 34467899999999654 567889999988 799998865421
Q ss_pred CCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 396 ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++.++.| +..+.+ ++.++|||.-
T Consensus 195 --------~~l~~~~k~ADIvV~AvGkp~~--i~~~~i----k~GavVIDvG 232 (284)
T PRK14193 195 --------RDLAAHTRRADIIVAAAGVAHL--VTADMV----KPGAAVLDVG 232 (284)
T ss_pred --------CCHHHHHHhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2467778999999999999998 455455 4457999975
No 388
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.34 E-value=0.059 Score=50.54 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCE
Confidence 3799999999999999999998 75 899999874
No 389
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.34 E-value=0.058 Score=43.73 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CEEE-EECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDK---AKLS-IYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|.. ..+..|++.|.+.| .+|. ++++.-...... .++ ..
T Consensus 1 kI~iIG~G----------~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~ 48 (96)
T PF03807_consen 1 KIGIIGAG----------NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV 48 (96)
T ss_dssp EEEEESTS----------HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred CEEEECCC----------HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence 68888864 48899999999999 9999 558865433222 221 12
Q ss_pred eeec-CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 401 NVVW-DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 401 ~~~~-~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.... +..++++.+|+|++.++...+.++-. .+... .+.++|||.-
T Consensus 49 ~~~~~~~~~~~~~advvilav~p~~~~~v~~-~i~~~-~~~~~vis~~ 94 (96)
T PF03807_consen 49 QATADDNEEAAQEADVVILAVKPQQLPEVLS-EIPHL-LKGKLVISIA 94 (96)
T ss_dssp EEESEEHHHHHHHTSEEEE-S-GGGHHHHHH-HHHHH-HTTSEEEEES
T ss_pred ccccCChHHhhccCCEEEEEECHHHHHHHHH-HHhhc-cCCCEEEEeC
Confidence 3334 78999999999999999998877443 33223 2345898864
No 390
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.31 E-value=0.068 Score=54.41 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=27.4
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEE-eCCH
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVV-DISV 36 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~~ 36 (480)
|||+|+|+ |+||..++..|..+ +.+++..+ +.++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~~ 36 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASPR 36 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEEChh
Confidence 69999995 99999999988876 35788776 6543
No 391
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.28 E-value=0.68 Score=41.67 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=69.8
Q ss_pred HHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCC
Q 011654 311 VNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQ 390 (480)
Q Consensus 311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
++-+++..+-.+.++++.|+|... -...+++.|+..|+.|.++|--. -..++.-
T Consensus 10 ~d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~DP-i~alqA~--------------- 63 (162)
T PF00670_consen 10 VDGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEIDP-IRALQAA--------------- 63 (162)
T ss_dssp HHHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SSH-HHHHHHH---------------
T ss_pred HHHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECCh-HHHHHhh---------------
Confidence 344444444467899999999866 67899999999999999987632 1112211
Q ss_pred CCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecC
Q 011654 391 PMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYSIGK 467 (480)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~ 467 (480)
..+++. .+.+++++.+|.+|-.|..+.. ++.+. .+.|+..+++.+.-.. +|-+.+++.+..-..+..
T Consensus 64 ------~dGf~v-~~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~ 133 (162)
T PF00670_consen 64 ------MDGFEV-MTLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP 133 (162)
T ss_dssp ------HTT-EE-E-HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred ------hcCcEe-cCHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence 133444 3689999999999999999764 33334 4567888677665433 233345555555555543
No 392
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.27 E-value=0.067 Score=53.55 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.5
Q ss_pred CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 011654 1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVV 32 (480)
Q Consensus 1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++||+||| .||+|.-+...|..+ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 46999999 699999999999887 44455444
No 393
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.15 Score=50.30 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=59.4
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+-++.+++|.|+|=|- .-..+|+..|.++|+.|.+..-..
T Consensus 154 ~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T------------------------------- 193 (288)
T PRK14171 154 EPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT------------------------------- 193 (288)
T ss_pred CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence 4468999999999643 456789999999999999765322
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++.++.|- +...+ ++.++|||.-
T Consensus 194 -----~~L~~~~~~ADIvV~AvGkp~~i--~~~~v----k~GavVIDvG 231 (288)
T PRK14171 194 -----HNLSSITSKADIVVAAIGSPLKL--TAEYF----NPESIVIDVG 231 (288)
T ss_pred -----CCHHHHHhhCCEEEEccCCCCcc--CHHHc----CCCCEEEEee
Confidence 24566789999999999999874 44444 4457999975
No 394
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.24 E-value=0.13 Score=50.83 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=61.9
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|+|+|-+. .-..+++..|..+|+.|.+.+-..
T Consensus 152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------ 192 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------ 192 (286)
T ss_pred cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence 34468999999999532 467889999999999999876421
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL 450 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
.++.+.+++||+||.++..+.| +..+.+ ++..+|||.-.-.
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~--i~~~~v----k~gavVIDvGi~~ 233 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGL--VTKDVV----KEGAVIIDVGNTP 233 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCcc--cCHHHc----CCCcEEEEcCCCc
Confidence 2456778999999999999987 444433 4557999986543
No 395
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.22 E-value=0.19 Score=53.17 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=66.5
Q ss_pred EEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCHHHHhcc
Q 011654 3 KICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDIEKHVAE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
+|-|||+|-.|.+ +|..|++. |++|+++|.+... .+.+.+. ++++. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999988 9999999976532 2223221 12222 122 33667
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|. +...++.+.+ -+...+++..+|.+..|..-.||.. +..+|+..+
T Consensus 59 ~d~vV~spgi~~-----------~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 59 ADVVVVSAAIKD-----------DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCEEEECCCCCC-----------CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 998887743332 2122333321 1223333446777777876666655 677887654
No 396
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.21 E-value=0.067 Score=54.23 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=41.5
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA 77 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~ 77 (480)
|+||+|+|+ |++|.-+...|.++ .|..++..+... +.. |+ ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 468999996 99999999999965 233455555332 211 21 111111 1133322 2223 68
Q ss_pred cCcEEEEeccC
Q 011654 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 66 ~vD~vFla~p~ 76 (336)
T PRK05671 66 QVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEcCCH
Confidence 89999999873
No 397
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.19 E-value=0.18 Score=49.69 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK----AKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPA 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+..+|+|+|+. ..+..+++.|.+.| .+|.++|+.... +.+...
T Consensus 2 ~~mkI~~IG~G----------~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~--------------------- 50 (279)
T PRK07679 2 SIQNISFLGAG----------SIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK--------------------- 50 (279)
T ss_pred CCCEEEEECcc----------HHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh---------------------
Confidence 34589999974 58899999999988 789999975321 111111
Q ss_pred CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654 397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE 457 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
.++...++..++++++|+||+++.-+.+.+. .+.+....++..+|||.-+-+..+.+++
T Consensus 51 -~g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 51 -YGVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred -cCceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 1345567888888999999999998877653 3556555555569999855557776664
No 398
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.16 Score=49.85 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=59.5
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+-++++++|.|+|=|- .-..+++..|.++|+.|.+..-..
T Consensus 152 ~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T------------------------------- 191 (281)
T PRK14183 152 EIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT------------------------------- 191 (281)
T ss_pred CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence 3468999999999543 466889999999999998864321
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++++++| +..+++ ++.++|||.-
T Consensus 192 -----~~l~~~~~~ADIvV~AvGkp~~--i~~~~v----k~gavvIDvG 229 (281)
T PRK14183 192 -----KDLKAHTKKADIVIVGVGKPNL--ITEDMV----KEGAIVIDIG 229 (281)
T ss_pred -----cCHHHHHhhCCEEEEecCcccc--cCHHHc----CCCcEEEEee
Confidence 2456678999999999999998 444444 3456999975
No 399
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.18 E-value=0.11 Score=52.48 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=51.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|+ |.||..++..|+.+. | .+++++++++++.+.+.+.. ..+.+ .++++++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el---------------~~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAEL---------------GGGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHh---------------ccccH---HhHHHHHccC
Confidence 57999998 899999999998531 3 68999999988887766420 00111 2466778999
Q ss_pred cEEEEeccCC
Q 011654 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|+.+...+
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999997654
No 400
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.16 E-value=0.4 Score=44.86 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=70.0
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.++++++|+|.|+.- -...+++.|.+.|++|.++|......... ..+
T Consensus 23 ~~~l~gk~v~I~G~G~----------vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--------------------- 71 (200)
T cd01075 23 TDSLEGKTVAVQGLGK----------VGYKLAEHLLEEGAKLIVADINEEAVARAAELF--------------------- 71 (200)
T ss_pred CCCCCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence 4578899999999852 77889999999999999999864321111 111
Q ss_pred CceeeecCHHHhc-ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC-CC----hHHHhhcCcEEEE
Q 011654 398 KQVNVVWDAYQAA-KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI-LD----VEKLREIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~-~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~-~~----~~~~~~~g~~y~~ 464 (480)
+....++ ++.+ .++|+++-+.-... ++-+.+ +.++.+ +|+++-|- +. .+.+++.|+.|.-
T Consensus 72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILYAP 137 (200)
T ss_pred -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEeC
Confidence 1122222 3333 37999986655443 454555 455655 89999986 22 2345678988843
No 401
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.094 Score=51.65 Aligned_cols=71 Identities=18% Similarity=0.376 Sum_probs=53.5
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ +..|++++.. |.++.+.+++||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 578899999999988 8899988631 235566689999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.- .+ ..++++|.+||+.+
T Consensus 204 IvI~AvG~p~~---------i~-----------~~~ik~gavVIDvG 230 (284)
T PRK14190 204 ILIVAVGKPKL---------IT-----------ADMVKEGAVVIDVG 230 (284)
T ss_pred EEEEecCCCCc---------CC-----------HHHcCCCCEEEEee
Confidence 99999986531 11 23457899998643
No 402
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.11 E-value=0.16 Score=44.93 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHH-HHhhhccccCCCCCCCCCCCCCCCC
Q 011654 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQI-QRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
...++++|+|+|.. ..+..+++.|.+.| .+|.++|+.....+. ...++. ..
T Consensus 15 ~~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~ 67 (155)
T cd01065 15 IELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LG 67 (155)
T ss_pred CCCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------cc
Confidence 34678899999964 36788999999885 889999986543221 222210 00
Q ss_pred CceeeecCHHHhcccccEEEEEeccccc--ccccHHHHHHhcCCCCEEEEcCCCCCh-----HHHhhcCcEE
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEF--KTLDYQKIFDNMRKPAYIFDGRNILDV-----EKLREIGFIV 462 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~--~~~~~~~~~~~~~~~~~i~D~~~~~~~-----~~~~~~g~~y 462 (480)
-.. ...+..++++++|+||.+|.-+.. .+..... ..+++..+|+|.... +. +.+++.|..+
T Consensus 68 ~~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~--~~~~~~~~v~D~~~~-~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 68 IAI-AYLDLEELLAEADLIINTTPVGMKPGDELPLPP--SLLKPGGVVYDVVYN-PLETPLLKEARALGAKT 135 (155)
T ss_pred cce-eecchhhccccCCEEEeCcCCCCCCCCCCCCCH--HHcCCCCEEEEcCcC-CCCCHHHHHHHHCCCce
Confidence 001 224566778999999999988764 1221111 223555699999655 33 3455666654
No 403
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.09 E-value=0.068 Score=52.89 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=51.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe---cCHHHHhc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS---TDIEKHVA 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t---~d~~~a~~ 77 (480)
.++.|||+|-+|.+++..|+.. |. +|++++|++++.+.+.+.... ...+... .+..+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~--------------~~~~~~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQ--------------VGVITRLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhh--------------cCcceeccchhhhhhccc
Confidence 3689999999999999999987 65 799999999998887642100 0011111 12234457
Q ss_pred cCcEEEEeccCC
Q 011654 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+||-|+|..
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 899999997753
No 404
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.07 E-value=0.21 Score=56.90 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=65.8
Q ss_pred EEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccC
Q 011654 3 KICCIGAGYVGGPT-MAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
+|.|||+|..|.+. |..|.++ |++|+++|.++. ..+.+.+. ++.+. ....+.+.++
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~-------------------gi~~~~g~~~~~~~~~ 64 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAK-------------------GARFFLGHQEEHVPED 64 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHcCCC
Confidence 49999999999997 8888888 999999997642 22333321 12211 1122336678
Q ss_pred cEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
|+||++-.-|. +...++.+.+ ++ ...++...+|.+..|..-.||.. +..+|+..
T Consensus 65 d~vV~SpgI~~-----------~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 65 AVVVYSSSISK-----------DNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred CEEEECCCcCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 99887743332 2222333321 12 22233336777777877666655 56778764
No 405
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.03 E-value=0.11 Score=44.26 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=59.9
Q ss_pred cEEEEEc----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654 2 VKICCIG----AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -+.+|.-+...|.++ |++|+.++.....+ .+.....++++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 799999999999997 99999987643211 24667778877337
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+.+++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 89999999873 2345666666554 3345555433 3345566666664
No 406
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.01 E-value=0.057 Score=54.65 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=54.5
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH-Hhcc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK-HVAE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
+||+|||+ |++|.-+...|+.+ .|..++..+..+.+ .|+ ++...+ ..+.+. ++++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 68999996 99999999999974 36677777754321 121 111111 124443 3333 2368
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecC
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST 128 (480)
+|++|+|+|.. +..++.+. ...|..||+.|.
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence 99999998742 22333332 246888888663
No 407
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.00 E-value=0.1 Score=51.45 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=53.1
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ +..|+.+... |.++++..++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 77899999999987 7899977631 345666688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|-- .+ ..++++|++||+.
T Consensus 201 IvIsAvGkp~~---------i~-----------~~~vk~GavVIDV 226 (287)
T PRK14173 201 VLVVAVGRPHL---------IT-----------PEMVRPGAVVVDV 226 (287)
T ss_pred EEEEecCCcCc---------cC-----------HHHcCCCCEEEEc
Confidence 99999986621 11 2456889999864
No 408
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.99 E-value=0.2 Score=49.64 Aligned_cols=79 Identities=18% Similarity=0.108 Sum_probs=60.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=|. .-..+|+..|.++|+.|++.+-..
T Consensus 161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------ 201 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------ 201 (299)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467889999999999999975432
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||+||.++..+.|- ..+++ ++.++|||.-
T Consensus 202 ------~nl~~~~~~ADIvv~AvGk~~~i--~~~~v----k~gavVIDvG 239 (299)
T PLN02516 202 ------PDPESIVREADIVIAAAGQAMMI--KGDWI----KPGAAVIDVG 239 (299)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEee
Confidence 24577789999999999999864 44444 4457999975
No 409
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99 E-value=0.38 Score=51.19 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||+|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999653
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.98 E-value=0.081 Score=43.90 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=29.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 4799999999999999999998 89999999875
No 411
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.98 E-value=0.27 Score=50.65 Aligned_cols=80 Identities=13% Similarity=-0.002 Sum_probs=60.8
Q ss_pred CCCEEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654 323 SGKKIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN 401 (480)
Q Consensus 323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..++|+|+| +.- ..-.++..|.++|.+|.+||+...
T Consensus 97 ~~~~I~IiGG~Gl----------mG~slA~~l~~~G~~V~~~d~~~~--------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQ----------LGRLFAKMLTLSGYQVRILEQDDW--------------------------------- 133 (374)
T ss_pred ccceEEEEcCCCh----------hhHHHHHHHHHCCCeEEEeCCCcc---------------------------------
Confidence 347999998 644 778899999999999999997310
Q ss_pred eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
++.+++++++|+||++++.....+ -+.++.. +++.++|+|...+
T Consensus 134 --~~~~~~~~~aDlVilavP~~~~~~-~~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 134 --DRAEDILADAGMVIVSVPIHLTEE-VIARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred --hhHHHHHhcCCEEEEeCcHHHHHH-HHHHHhC-CCCCcEEEECCCc
Confidence 145677889999999999887543 2245555 6667899999665
No 412
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.2 Score=49.43 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=60.1
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=|- .-..+|+..|..+|+.|.+.+-..
T Consensus 158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 198 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------ 198 (287)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence 34467999999999533 357889999999999999877422
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||.||.++..|.|- +.+.+ ++.++|||.-
T Consensus 199 ------~~l~~~~~~ADIvv~AvG~p~~i--~~~~v----k~gavVIDvG 236 (287)
T PRK14176 199 ------DDLKKYTLDADILVVATGVKHLI--KADMV----KEGAVIFDVG 236 (287)
T ss_pred ------CCHHHHHhhCCEEEEccCCcccc--CHHHc----CCCcEEEEec
Confidence 24566789999999999999874 44333 4567999975
No 413
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.93 E-value=0.18 Score=50.78 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCC
Q 011654 307 KNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-++++++|.|+|=|- .-..+++..|.++|+.|.+..-..
T Consensus 198 p~avi~LL-~~~~i~l~GK~vvVIGRS~---------iVGkPla~LL~~~~ATVTicHs~T------------------- 248 (345)
T PLN02897 198 PKGCVELL-IRSGVEIAGKNAVVIGRSN---------IVGLPMSLLLQRHDATVSTVHAFT------------------- 248 (345)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCEEEEEcCCC-------------------
Confidence 34444444 3344578999999999543 456788889999999998865322
Q ss_pred CCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 387 IHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.+++++.| +..+++ ++.++|||.-
T Consensus 249 -----------------~nl~~~~~~ADIvIsAvGkp~~--v~~d~v----k~GavVIDVG 286 (345)
T PLN02897 249 -----------------KDPEQITRKADIVIAAAGIPNL--VRGSWL----KPGAVVIDVG 286 (345)
T ss_pred -----------------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2456778999999999999998 455445 4457999975
No 414
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.93 E-value=0.2 Score=49.37 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=60.5
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=|- .-..+|+..|..+|+.|.+.+-..
T Consensus 153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------ 193 (285)
T PRK10792 153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------ 193 (285)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence 33467899999999533 357889999999999999875431
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||.||.+++++.| +..+. .++.++|||.-
T Consensus 194 ------~~l~~~~~~ADIvi~avG~p~~--v~~~~----vk~gavVIDvG 231 (285)
T PRK10792 194 ------KNLRHHVRNADLLVVAVGKPGF--IPGEW----IKPGAIVIDVG 231 (285)
T ss_pred ------CCHHHHHhhCCEEEEcCCCccc--ccHHH----cCCCcEEEEcc
Confidence 2467778999999999999997 44433 35567999986
No 415
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.92 E-value=0.19 Score=50.91 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCC
Q 011654 308 NRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++.+. ..+-++++++|.|+|=|- --..+|+..|.++++.|.+..-..
T Consensus 216 ~avielL~-~y~i~l~GK~vvVIGRS~---------iVGkPLa~LL~~~~ATVTicHs~T-------------------- 265 (364)
T PLN02616 216 KGCIELLH-RYNVEIKGKRAVVIGRSN---------IVGMPAALLLQREDATVSIVHSRT-------------------- 265 (364)
T ss_pred HHHHHHHH-HhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCeEEEeCCCC--------------------
Confidence 33444433 344578999999999543 456788999999999999875432
Q ss_pred CCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+.+ ++.++|||.-
T Consensus 266 ----------------~nl~~~~r~ADIVIsAvGkp~~--i~~d~v----K~GAvVIDVG 303 (364)
T PLN02616 266 ----------------KNPEEITREADIIISAVGQPNM--VRGSWI----KPGAVVIDVG 303 (364)
T ss_pred ----------------CCHHHHHhhCCEEEEcCCCcCc--CCHHHc----CCCCEEEecc
Confidence 2456778999999999999998 455445 4557999975
No 416
>PRK05868 hypothetical protein; Validated
Probab=94.89 E-value=0.027 Score=58.02 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999998 999999998765
No 417
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.17 Score=49.85 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=59.9
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+++..|.++|+.|.+.+-..
T Consensus 151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------ 191 (285)
T PRK14191 151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------ 191 (285)
T ss_pred hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence 34467899999999542 467889999999999999874321
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~p~~--i~~~~v----k~GavVIDvG 229 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGKPDL--IKASMV----KKGAVVVDIG 229 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCcEEEEee
Confidence 2345678999999999999998 444444 4557999975
No 418
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.83 E-value=0.19 Score=48.96 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=67.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+++|+. ..+..+++.|.+.|. +|.+| |+.-...+.... .++
T Consensus 2 kI~~IG~G----------~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~ 49 (266)
T PLN02688 2 RVGFIGAG----------KMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV 49 (266)
T ss_pred eEEEECCc----------HHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence 68999973 488899999999998 89999 775332221111 234
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
...++..++++++|+|+++++-..+++.- ..+...+++..+||..-+-...+.+++
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~~~~~~~vl-~~l~~~~~~~~~iIs~~~g~~~~~l~~ 105 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVKPQVVKDVL-TELRPLLSKDKLLVSVAAGITLADLQE 105 (266)
T ss_pred EEeCChHHHHhcCCEEEEEECcHHHHHHH-HHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence 56678888889999999999644444422 344444555567887756566666553
No 419
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.13 Score=50.49 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=53.3
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||- ..+|.|+|..|.++ +..|+.+... |.++.+.+++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999988 8899987531 245666689999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- .. ..++++|.+||+.+
T Consensus 203 IvI~AvG~~~~---------i~-----------~~~vk~GavVIDvG 229 (284)
T PRK14170 203 ILVVATGLAKF---------VK-----------KDYIKPGAIVIDVG 229 (284)
T ss_pred EEEEecCCcCc---------cC-----------HHHcCCCCEEEEcc
Confidence 99999986521 11 24567899998643
No 420
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.81 E-value=0.14 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.9
Q ss_pred cEEEEEcCChhHHHHHHHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIAL 22 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~ 22 (480)
|||+|||+|.||..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999987
No 421
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.80 E-value=0.082 Score=53.65 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=42.1
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHh
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIE---VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~ 76 (480)
+||+|||+ |++|.-+...|..+ +.++ +..+....+ .|+. +...+ ..+.+. .+.++ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk~-~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGKT-VQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCCC-eeeCC----------cceEEEeCCHHH-h
Confidence 58999996 99999999999964 3677 555543311 1211 11101 123322 24433 6
Q ss_pred ccCcEEEEeccC
Q 011654 77 AEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|.|+|.
T Consensus 67 ~~~Divf~a~~~ 78 (347)
T PRK06728 67 EGVDIAFFSAGG 78 (347)
T ss_pred cCCCEEEECCCh
Confidence 889999999874
No 422
>PLN00203 glutamyl-tRNA reductase
Probab=94.78 E-value=0.72 Score=49.57 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=69.9
Q ss_pred HHHHHHHHhcC-cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCCChHHH-HHhhhccccCCCCC
Q 011654 310 FVNRIVSSMFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQVTEDQI-QRDLSMKKFDWDHP 386 (480)
Q Consensus 310 ~~~~~~~~l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~~-~~~~~~~~~~~~~~ 386 (480)
.++...+.++. ++.+++|+|+|.. ..+..+++.|...|+ +|.++++....... ...++
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--------- 311 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--------- 311 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------
Confidence 34444444432 4789999999974 488889999999996 69999997654222 22110
Q ss_pred CCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcC------CCCEEEEcC
Q 011654 387 IHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR------KPAYIFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~------~~~~i~D~~ 447 (480)
...-.+...++..+++.++|+||.+|.-+.+- +..+.+...++ +|.+|||..
T Consensus 312 --------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 312 --------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred --------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeC
Confidence 00001112356778899999999999665542 34445544331 466999974
No 423
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.78 E-value=0.11 Score=52.92 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|||+|.+|.++|..|+.. |. +++++|.|.-....+++
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~R 66 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQR 66 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCc
Confidence 4799999999999999999998 77 89999997644444443
No 424
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.78 E-value=0.069 Score=50.85 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=49.6
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 4 ICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+|+ |.+|.+++..|.+. +++|.+.-|++. ..+.+......+-+-+ +.-..++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d------------~~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEAD------------YDDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-------------TT-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeecc------------cCCHHHHHHHHcCCc
Confidence 789996 99999999999997 999999999863 4555553211111111 111133556789999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
No 425
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.14 Score=50.37 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=52.7
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.++++..++||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999988 8899977531 245666688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-- .+ ..++++|++||+.
T Consensus 202 IvI~AvG~p~~---------i~-----------~~~vk~GavVIDv 227 (282)
T PRK14169 202 ILVVAVGVPHF---------IG-----------ADAVKPGAVVIDV 227 (282)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCcEEEEe
Confidence 99999986521 11 2357889999864
No 426
>PRK06753 hypothetical protein; Provisional
Probab=94.76 E-value=0.033 Score=57.09 Aligned_cols=34 Identities=35% Similarity=0.394 Sum_probs=32.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+.+|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999998 999999998865
No 427
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.75 E-value=0.51 Score=47.29 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=57.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHH-H-CCCCCC--CC-CChHHHHHhhcCCCEEEecCHHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAW-N-GDQLPI--YE-PGLEDVVTQCRGRNLFFSTDIEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l-~-~~~~~~--~e-~~l~~l~~~~~~~~l~~t~d~~~a 75 (480)
-+|++||+|.||+-+....++- ||.+|..+ |++....... . .+.... .| ......-..+..|++.+|+|.+..
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m-~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASM-PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred eEEEEecccccchHHHHHHhhc-CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 3799999999999999999864 79997764 7776544332 2 122211 11 122333334567889999988775
Q ss_pred hc--cCcEEEEeccCC
Q 011654 76 VA--EADIVFVSVNTP 89 (480)
Q Consensus 76 ~~--~aDvVii~Vptp 89 (480)
+. ..|+||-++.-|
T Consensus 97 ~~~~~IdvIIdATG~p 112 (438)
T COG4091 97 IANDLIDVIIDATGVP 112 (438)
T ss_pred hcCCcceEEEEcCCCc
Confidence 43 557888887655
No 428
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.26 Score=48.60 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=59.9
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS 393 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+-++++++|.|+|=|- .-..+|+..|.++ ++.|++..-..
T Consensus 147 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~AtVtvchs~T-------------------------- 191 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSN---------IVGKPLAALLMQKHPDTNATVTLLHSQS-------------------------- 191 (287)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHhCcCCCCCEEEEeCCCC--------------------------
Confidence 34467999999999543 4678899999988 78988754321
Q ss_pred CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| +..+++ ++.++|||.-
T Consensus 192 ----------~~l~~~~~~ADIvV~AvG~p~~--i~~~~i----k~GavVIDvG 229 (287)
T PRK14181 192 ----------ENLTEILKTADIIIAAIGVPLF--IKEEMI----AEKAVIVDVG 229 (287)
T ss_pred ----------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence 2467778999999999999998 454445 4457999975
No 429
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.12 Score=51.08 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=53.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|..+ |..|+.+... |.++.+.+++||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 67899999999988 8899887531 235666678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- .+ ..++++|.+||+..
T Consensus 204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDvG 230 (297)
T PRK14186 204 ILVAAAGRPNL---------IG-----------AEMVKPGAVVVDVG 230 (297)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence 99999986521 11 24568899998643
No 430
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.31 Score=46.33 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=86.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+++||.- +...+++.|+.+|.+|.+||-.....+-... ...+-.+|
T Consensus 2 ~iGmiGLGr----------MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~----------------------~ga~~a~s 49 (300)
T COG1023 2 QIGMIGLGR----------MGANLVRRLLDGGHDVVGYDVNQTAVEELKD----------------------EGATGAAS 49 (300)
T ss_pred cceeeccch----------hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh----------------------cCCccccC
Confidence 567778754 6788999999999999999987654332221 12334455
Q ss_pred HHHhc---ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcCcccc
Q 011654 406 AYQAA---KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPWHKDT 476 (480)
Q Consensus 406 ~~~a~---~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~~~~~ 476 (480)
+++-+ ..--+|-++++|-..-+--.++++..+...-+|||+-|-.=++ .+.+.|+.|.-.|.+.-.|-.++
T Consensus 50 l~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~ 129 (300)
T COG1023 50 LDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAER 129 (300)
T ss_pred HHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhc
Confidence 55544 3567899999998765555677888887666999999976433 35568999999999888887653
No 431
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.13 Score=50.54 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=52.8
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||- ..+|.|+|..|.++ |..|+.+... |.|+.+..+.||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 47999995 67899999999988 8899988631 245566678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-- .. ..++++|.+||+.
T Consensus 204 IvIsAvGkp~~---------i~-----------~~~vk~gavVIDv 229 (282)
T PRK14180 204 ILIVAVGKPNF---------IT-----------ADMVKEGAVVIDV 229 (282)
T ss_pred EEEEccCCcCc---------CC-----------HHHcCCCcEEEEe
Confidence 99999986621 11 2346789999864
No 432
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.71 E-value=0.19 Score=51.44 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=24.9
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeC
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIE---VAVVDI 34 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~ 34 (480)
||+|+|||+ |++|.-|...+..+ +.+. +..+..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss 37 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST 37 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence 789999996 99999999855544 3666 666544
No 433
>PRK00536 speE spermidine synthase; Provisional
Probab=94.70 E-value=0.64 Score=45.35 Aligned_cols=101 Identities=8% Similarity=0.094 Sum_probs=67.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.||-|||.|--|. +..+.++ ..+|+.+|+|++.++..++-- |.+.. .....+++......+.- ..-|
T Consensus 74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~l-----P~~~~---~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISFF-----PHFHE---VKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHHC-----HHHHH---hhcCCCEEEeehhhhccCCcCC
Confidence 5899999999876 6777765 249999999999998877621 11111 22345666554443322 4689
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+||+-.. + + .+-.+.+.+.|+++-+++..|+.+-
T Consensus 142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9987731 1 1 2345667888999999988777543
No 434
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.69 E-value=0.097 Score=51.45 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=31.4
Q ss_pred EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011654 3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRI 39 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
+|.|+|+ |++|..++..|.+. |++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889987 99999999999998 99999999998754
No 435
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.67 E-value=0.12 Score=51.90 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=69.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654 326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....++..|.+.|.+|.+||..-...+.....+ . ++... +. .....++....+
T Consensus 3 kI~iiG~G~----------mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~---~~~~~-~~-~~~~~~~~~~~~ 64 (325)
T PRK00094 3 KIAVLGAGS----------WGTALAIVLARNGHDVTLWARDPEQAAEINADR---E---NPRYL-PG-IKLPDNLRATTD 64 (325)
T ss_pred EEEEECCCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC---c---ccccC-CC-CcCCCCeEEeCC
Confidence 799999854 889999999999999999998543322111110 0 00000 00 011124556678
Q ss_pred HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654 406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV 452 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
+.++++++|+|++++......+ -++.+.....+..+|++..|-+++
T Consensus 65 ~~~~~~~~D~vi~~v~~~~~~~-v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 65 LAEALADADLILVAVPSQALRE-VLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred HHHHHhCCCEEEEeCCHHHHHH-HHHHHHhhcCCCCEEEEEeecccC
Confidence 8888999999999999865443 224555555555689999865554
No 436
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.63 E-value=0.14 Score=50.83 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=53.6
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999988 8899988641 235666789999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.- .. ..++++|++||+.+
T Consensus 213 Ivv~AvGk~~~---------i~-----------~~~vk~gavVIDvG 239 (299)
T PLN02516 213 IVIAAAGQAMM---------IK-----------GDWIKPGAAVIDVG 239 (299)
T ss_pred EEEEcCCCcCc---------cC-----------HHHcCCCCEEEEee
Confidence 99999986521 11 24568899998643
No 437
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.15 Score=50.18 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=53.3
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ +..|+.+... |.++++..++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999987 8899987741 245666678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- .+ ....++|.+||+.+
T Consensus 203 IvIsAvGkp~~---------i~-----------~~~vk~GavVIDvG 229 (282)
T PRK14166 203 LIIVAAGCVNL---------LR-----------SDMVKEGVIVVDVG 229 (282)
T ss_pred EEEEcCCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence 99999986521 11 23467899998643
No 438
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.17 Score=49.81 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=54.4
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||- ..+|.|+|..|.++ |..|+.++.. |.|+++..++||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 77899999999988 8899988731 245666688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-- .. ..++++|++||+..+
T Consensus 205 IvIsAvGk~~~---------i~-----------~~~ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVGKPEF---------IK-----------ADWISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCCCcCc---------cC-----------HHHcCCCCEEEEecC
Confidence 99999986521 11 245789999997544
No 439
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.56 E-value=0.16 Score=50.86 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA--KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN 401 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+|+|+|+.- .+..++..|.+.|. +|.+||+.....+....++ ....
T Consensus 6 ~~~I~IIG~G~----------mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g--------------------~~~~ 55 (307)
T PRK07502 6 FDRVALIGIGL----------IGSSLARAIRRLGLAGEIVGADRSAETRARARELG--------------------LGDR 55 (307)
T ss_pred CcEEEEEeeCH----------HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC--------------------CCce
Confidence 46899999743 77889999998884 8999999644322222111 0012
Q ss_pred eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
...+.+++++++|+||++|+-....++ .+.+...+++..+|+|.-++
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~~~~v-~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGASGAV-AAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHHHHHH-HHHHHhhCCCCCEEEeCccc
Confidence 345677888999999999987654432 24555566666689997554
No 440
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.49 E-value=0.15 Score=51.03 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
.+.+|+|+|. .+....++..|.+.|.+|.+||....
T Consensus 3 ~~m~I~iiG~----------G~~G~~lA~~l~~~G~~V~~~~r~~~---------------------------------- 38 (308)
T PRK14619 3 QPKTIAILGA----------GAWGSTLAGLASANGHRVRVWSRRSG---------------------------------- 38 (308)
T ss_pred CCCEEEEECc----------cHHHHHHHHHHHHCCCEEEEEeCCCC----------------------------------
Confidence 3568999998 45899999999999999999997421
Q ss_pred ecCHHHhcccccEEEEEecccccccccHHHHHH-hcCCCCEEEEcCCCCChH
Q 011654 403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFD-NMRKPAYIFDGRNILDVE 453 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~-~~~~~~~i~D~~~~~~~~ 453 (480)
.++.++++++|+|+++++.+..+++- +.+.. .+++..+|+|+.+=++++
T Consensus 39 -~~~~~~~~~advvi~~vp~~~~~~v~-~~l~~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 39 -LSLAAVLADADVIVSAVSMKGVRPVA-EQVQALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred -CCHHHHHhcCCEEEEECChHHHHHHH-HHHHHhcCCCCcEEEEeCCcccCC
Confidence 25678889999999999987655532 45544 245556899987644443
No 441
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.48 E-value=0.033 Score=55.58 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=47.3
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|+++ |++|++++++++....+........ .+.+.-..++.++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999998 9999999998765332221100000 011111123445567889
Q ss_pred EEEEecc
Q 011654 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9988864
No 442
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.48 E-value=0.28 Score=46.85 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=47.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI---EVAVVDIS----VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~ 74 (480)
+||.|+|+|.+|..+|..|... |. +++++|++ .++.+.+... ..++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence 4799999999999999999987 65 69999998 3432211110 011111100001 1135666
Q ss_pred HhccCcEEEEecc
Q 011654 75 HVAEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
++.++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999998876
No 443
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.15 Score=50.02 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=43.4
Q ss_pred cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.|+|..|... |..|+....+. .++.+.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence 479999998 9999999999987 88999888532 23455678999
Q ss_pred EEEEeccCC
Q 011654 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++-|
T Consensus 198 IvI~Avgk~ 206 (279)
T PRK14178 198 ILVSAAGKA 206 (279)
T ss_pred EEEECCCcc
Confidence 999999754
No 444
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.41 E-value=0.48 Score=49.78 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=71.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEe
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-D----------ISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t 69 (480)
++|+|.|.|.||..+|..|... |.+|+++ | +|.+.+..+++.. .. +..+... .+.+..
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~-----l~~~~~~---~~~~~i 302 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGR-----ISEYAEE---FGAEYL 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCc-----hhhhhhh---cCCeec
Confidence 5899999999999999999988 8999988 8 7777766665421 11 1111100 011222
Q ss_pred cCHHHHh-ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCC
Q 011654 70 TDIEKHV-AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREI 148 (480)
Q Consensus 70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~ 148 (480)
+ .++.. .+||+++-|-.+.. .+ .+....+.. .+.-+|.+.-..|-| ..-.++|.+.+
T Consensus 303 ~-~~~i~~~d~DVliPaAl~n~----------It----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG--- 360 (445)
T PRK09414 303 E-GGSPWSVPCDIALPCATQNE----------LD----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG--- 360 (445)
T ss_pred C-CccccccCCcEEEecCCcCc----------CC----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence 2 22222 37999999965432 12 122233321 234455565554444 44556777654
Q ss_pred ceeEeeCCcccc
Q 011654 149 KYQILSNPEFLA 160 (480)
Q Consensus 149 ~~~v~~~Pe~~~ 160 (480)
+.+.|..+.
T Consensus 361 ---I~~vPD~la 369 (445)
T PRK09414 361 ---VLFAPGKAA 369 (445)
T ss_pred ---cEEECchhh
Confidence 556787654
No 445
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.40 E-value=0.44 Score=45.69 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=32.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|..+|..|++. |. +++++|.+.=....+++
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR 53 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR 53 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence 4799999999999999999998 65 89999977544444443
No 446
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.38 E-value=0.096 Score=50.54 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=35.2
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654 1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW 42 (480)
Q Consensus 1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+|+|.|+|+ |.+|..++..|+++ |++|+++.+++++.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 478999995 99999999999998 99999999998876544
No 447
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.37 E-value=0.32 Score=48.20 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=59.7
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS 393 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+-++++++|.|+|=|- .-..+|+..|.++ ++.|++..-.
T Consensus 155 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~atVtv~hs~--------------------------- 198 (297)
T PRK14168 155 SGVETSGAEVVVVGRSN---------IVGKPIANMMTQKGPGANATVTIVHTR--------------------------- 198 (297)
T ss_pred hCCCCCCCEEEEECCCC---------cccHHHHHHHHhcccCCCCEEEEecCC---------------------------
Confidence 34468999999999643 5678899999988 7999885322
Q ss_pred CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
+.++.+.++.||+||.++..+.| ++.+++ ++.++|||.-
T Consensus 199 ---------T~~l~~~~~~ADIvVsAvGkp~~--i~~~~i----k~gavVIDvG 237 (297)
T PRK14168 199 ---------SKNLARHCQRADILIVAAGVPNL--VKPEWI----KPGATVIDVG 237 (297)
T ss_pred ---------CcCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEecC
Confidence 12466778999999999999998 455455 4457999984
No 448
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.37 E-value=0.18 Score=53.17 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred EEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654 326 KIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV 403 (480)
Q Consensus 326 ~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+|+|+| +. ..+..+++.|.+.|.+|.+||+..... .....+ ++.+.
T Consensus 2 kI~IIGG~G----------~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----------------------gv~~~ 49 (437)
T PRK08655 2 KISIIGGTG----------GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----------------------GVEYA 49 (437)
T ss_pred EEEEEecCC----------HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----------------------CCeec
Confidence 688886 43 377889999999999999999754321 111111 23456
Q ss_pred cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654 404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI 449 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
++..++++++|+|+++++-+...+ -.+++...+++..+|+|..++
T Consensus 50 ~~~~e~~~~aDvVIlavp~~~~~~-vl~~l~~~l~~~~iViDvsSv 94 (437)
T PRK08655 50 NDNIDAAKDADIVIISVPINVTED-VIKEVAPHVKEGSLLMDVTSV 94 (437)
T ss_pred cCHHHHhccCCEEEEecCHHHHHH-HHHHHHhhCCCCCEEEEcccc
Confidence 678888999999999998765543 235666777777799999985
No 449
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.37 E-value=0.091 Score=55.67 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=56.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh----hcC------CCEEEecC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ----CRG------RNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~----~~~------~~l~~t~d 71 (480)
.||+|||.|.-|+..|..|+++ .|++|++|++.+.---.++-+..|.+ +....+... ... +++.+..+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~D 117 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGVD 117 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecCc
Confidence 4899999999999999977643 28999999998765544454544433 333333211 111 23344343
Q ss_pred --HHHHhccCcEEEEeccCC
Q 011654 72 --IEKHVAEADIVFVSVNTP 89 (480)
Q Consensus 72 --~~~a~~~aDvVii~Vptp 89 (480)
.++..+..|.||+++...
T Consensus 118 vt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 118 LKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred cCHHHHHhcCCEEEEEcCCC
Confidence 566557899999998754
No 450
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=94.35 E-value=0.17 Score=50.45 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEeccc
Q 011654 346 AIDVCKGLLGDKAKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~ 423 (480)
...+++.|.++|++|.+||+.-.. .+.+..+. ..+....+++.++++++|+|++++.-+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence 478999999999999999986432 11111111 124566788999999999999999876
Q ss_pred c-cccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654 424 E-FKTLDYQKIFDNMRKPAYIFDGRNILD 451 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
+ -+++- ..+...+++..+|||+.-+-+
T Consensus 93 aaV~eVl-~GLaa~L~~GaIVID~STIsP 120 (341)
T TIGR01724 93 KGTFSIA-RTIIEHVPENAVICNTCTVSP 120 (341)
T ss_pred HHHHHHH-HHHHhcCCCCCEEEECCCCCH
Confidence 5 33432 456677777789999955543
No 451
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.35 E-value=0.36 Score=50.62 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=74.4
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCCChHH-HHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQVTEDQ-IQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
++.+++|+|+|.. ..+..++..|...|+ +|.+++....... +...++ .
T Consensus 179 ~~~~~~vlViGaG----------~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------------------~ 228 (423)
T PRK00045 179 DLSGKKVLVIGAG----------EMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------------------G 228 (423)
T ss_pred CccCCEEEEECch----------HHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------------------C
Confidence 4678999999963 477888999999997 7999999654321 222221 0
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhc----CCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNM----RKPAYIFDGRN--ILDVEKLREIGFIVYSI 465 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~----~~~~~i~D~~~--~~~~~~~~~~g~~y~~i 465 (480)
.....++..+++.++|+||.+|..+.+- ++.+.+...+ ..|.+++|... =++++-..-.|..++.|
T Consensus 229 ~~~~~~~~~~~l~~aDvVI~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~v 300 (423)
T PRK00045 229 EAIPLDELPEALAEADIVISSTGAPHPI-IGKGMVERALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDV 300 (423)
T ss_pred cEeeHHHHHHHhccCCEEEECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEH
Confidence 1111245677889999999999887754 4555665543 24679999975 34443322235555554
No 452
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.18 Score=49.93 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=53.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ +..|+.+... |.++.+.+++||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999988 8899987741 235566688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|-- .+ ..++++|++||+.
T Consensus 206 IvVsAvGkp~~---------i~-----------~~~ik~gaiVIDV 231 (294)
T PRK14187 206 ILVAAVGIPNF---------VK-----------YSWIKKGAIVIDV 231 (294)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence 99999987631 11 2346789999863
No 453
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.33 E-value=0.12 Score=52.56 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=40.5
Q ss_pred cEEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654 2 VKICCIG-AGYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+||| .|++|.-+...|++. .|..++..+..... .|+ ++...+ ..+.+.....+++.++
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~~~~~~~ 70 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTEDSFDGV 70 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCHHHHcCC
Confidence 6899999 599999999999885 13334544432211 111 111111 1123322112346899
Q ss_pred cEEEEeccC
Q 011654 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||+|+|.
T Consensus 71 D~vf~a~p~ 79 (344)
T PLN02383 71 DIALFSAGG 79 (344)
T ss_pred CEEEECCCc
Confidence 999999875
No 454
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.32 E-value=0.11 Score=57.66 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=31.3
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|++. |++|++|++.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 5799999999999999999998 999999998764
No 455
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.30 E-value=0.062 Score=61.87 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|.-|++.|..|++. ||+|++||..+.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~ 340 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHD 340 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Confidence 5899999999999999999998 999999998653
No 456
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.29 E-value=0.15 Score=45.66 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCC-hHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVT-EDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++|+|+|. .|....-+..|+..|.+|.+=...-+ +.+..++ .++
T Consensus 2 l~~k~IAViGy----------GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~----------------------~Gf 49 (165)
T PF07991_consen 2 LKGKTIAVIGY----------GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA----------------------DGF 49 (165)
T ss_dssp HCTSEEEEES-----------SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH----------------------TT-
T ss_pred cCCCEEEEECC----------ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH----------------------CCC
Confidence 47899999995 56788899999999999998776655 2222222 233
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEE
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIF 444 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~ 444 (480)
+. .+..||++.||+|+++++-..-.++=-+++...|++...++
T Consensus 50 ~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 50 EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEE
T ss_pred ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEE
Confidence 33 47899999999999998654333333367888888765554
No 457
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.29 E-value=0.31 Score=48.09 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=60.2
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh----CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG----DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP 394 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~----~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
+-++++++|.|+|=|- .-..+|+..|.+ +++.|.+.+...
T Consensus 152 ~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------------------- 195 (286)
T PRK14184 152 GLSPAGKKAVVVGRSN---------IVGKPLALMLGAPGKFANATVTVCHSRT--------------------------- 195 (286)
T ss_pred CCCCCCCEEEEECCCc---------cchHHHHHHHhCCcccCCCEEEEEeCCc---------------------------
Confidence 3467899999999643 467889999998 889998866421
Q ss_pred CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++.++.| +..+.+ ++.++|||.-
T Consensus 196 ---------~~l~~~~~~ADIVI~AvG~p~l--i~~~~v----k~GavVIDVG 233 (286)
T PRK14184 196 ---------PDLAEECREADFLFVAIGRPRF--VTADMV----KPGAVVVDVG 233 (286)
T ss_pred ---------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2467788999999999999998 454444 4557999975
No 458
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.28 E-value=0.21 Score=48.95 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=52.9
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|..+ |..|+.++.. |.++.+..++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999987 8899988741 235566678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-- .+ ..++++|.+||+.
T Consensus 204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDv 229 (278)
T PRK14172 204 ILVVAIGRPKF---------ID-----------EEYVKEGAIVIDV 229 (278)
T ss_pred EEEEcCCCcCc---------cC-----------HHHcCCCcEEEEe
Confidence 99999986521 11 2346789999864
No 459
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.26 E-value=0.21 Score=49.22 Aligned_cols=70 Identities=19% Similarity=0.335 Sum_probs=52.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654 2 VKICCIGA-GYVGGPTMAVIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.+|+|||- +.+|.|+|..|.+ + +..|+.+... |.++++.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 47999994 7789999999987 5 6788887641 2356666889
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
||+||.+++-|-- .. ..++++|++||+.
T Consensus 204 ADIvV~AvGkp~~---------i~-----------~~~ik~GavVIDv 231 (284)
T PRK14193 204 ADIIVAAAGVAHL---------VT-----------ADMVKPGAAVLDV 231 (284)
T ss_pred CCEEEEecCCcCc---------cC-----------HHHcCCCCEEEEc
Confidence 9999999986521 11 2457899999863
No 460
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.24 E-value=0.24 Score=49.44 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=31.1
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|.|.| +|++|..++..|.++ |++|++++++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 5799998 699999999999998 9999999987653
No 461
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.24 E-value=0.046 Score=54.86 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=29.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|.|||+|..|+.+|..|+++ |++|+++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 4799999999999999999999 999999998653
No 462
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.22 E-value=0.41 Score=50.09 Aligned_cols=114 Identities=21% Similarity=0.228 Sum_probs=74.3
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.+.+++|+|+|.. ..+..+++.|...| .+|.+++...... .+...++. .
T Consensus 177 ~l~~~~VlViGaG----------~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~-------------------~ 227 (417)
T TIGR01035 177 SLKGKKALLIGAG----------EMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG-------------------E 227 (417)
T ss_pred CccCCEEEEECCh----------HHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-------------------e
Confidence 4688999999973 47888999999999 7899999865432 22222210 0
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcC---CCCEEEEcCCC--CChHHHhhcCcEEEEe
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR---KPAYIFDGRNI--LDVEKLREIGFIVYSI 465 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~---~~~~i~D~~~~--~~~~~~~~~g~~y~~i 465 (480)
.+ ..++..+++.++|+||.+|..++.- ++.+.+...+. .|.+++|...- ++++-..-.|..++.+
T Consensus 228 ~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~v 297 (417)
T TIGR01035 228 AV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDV 297 (417)
T ss_pred Ee-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEH
Confidence 11 1246778889999999999887753 45556655443 35699999742 3443222236665554
No 463
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.38 Score=47.58 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=59.0
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP 394 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
+-++.+++|.|+|=|- .-..+|+..|.++ ++.|.+..-..
T Consensus 152 ~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~~~~~aTVtvchs~T--------------------------- 195 (293)
T PRK14185 152 HIETSGKKCVVLGRSN---------IVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------------------- 195 (293)
T ss_pred CCCCCCCEEEEECCCc---------cchHHHHHHHHcCCCCCCCEEEEecCCC---------------------------
Confidence 3467999999999643 5678899999988 68888754321
Q ss_pred CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+++ ++.++|||.-
T Consensus 196 ---------~nl~~~~~~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG 233 (293)
T PRK14185 196 ---------KNLKKECLEADIIIAALGQPEF--VKADMV----KEGAVVIDVG 233 (293)
T ss_pred ---------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence 2456778999999999999998 454444 4457999975
No 464
>PLN02427 UDP-apiose/xylose synthase
Probab=94.16 E-value=0.057 Score=55.74 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=34.4
Q ss_pred cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654 2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999998 5999999999999861 599999999877665544
No 465
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.15 E-value=0.18 Score=50.73 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=53.0
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||- ..+|.|+|..|.++ +..|+++... |.++.+..++||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999987 8899887631 345566688999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- .. ...+++|.+||+..
T Consensus 260 IvIsAvGkp~~---------v~-----------~d~vk~GavVIDVG 286 (345)
T PLN02897 260 IVIAAAGIPNL---------VR-----------GSWLKPGAVVIDVG 286 (345)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCCEEEEcc
Confidence 99999986531 11 24468899998643
No 466
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.14 E-value=0.34 Score=48.95 Aligned_cols=103 Identities=7% Similarity=-0.016 Sum_probs=67.8
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|. .+....++..|.+.|.+|.+||+.....+..........+.+ ......++...+
T Consensus 5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~--------g~~~~~~~~~~~ 66 (328)
T PRK14618 5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP--------GVALPAELYPTA 66 (328)
T ss_pred CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC--------CCcCCCCeEEeC
Confidence 48999998 568999999999999999999996433222221110000000 001112355667
Q ss_pred CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654 405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
++.++++++|+|++++..... ..+.+.+++..++++..+=+
T Consensus 67 ~~~e~~~~aD~Vi~~v~~~~~-----~~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 67 DPEEALAGADFAVVAVPSKAL-----RETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CHHHHHcCCCEEEEECchHHH-----HHHHHhcCcCCEEEEEeecc
Confidence 888889999999999988864 33445555556889988843
No 467
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.24 Score=48.88 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=52.6
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||- ..+|.|+|..|.++ +..|+.+... |.++.+..++||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999988 8899987631 235566678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-- .. ..++++|.+||+.
T Consensus 205 IvV~AvGkp~~---------i~-----------~~~vk~GavVIDv 230 (288)
T PRK14171 205 IVVAAIGSPLK---------LT-----------AEYFNPESIVIDV 230 (288)
T ss_pred EEEEccCCCCc---------cC-----------HHHcCCCCEEEEe
Confidence 99999986521 11 2346889999864
No 468
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.07 E-value=0.88 Score=47.42 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=78.4
Q ss_pred HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCC
Q 011654 312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQP 391 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
+-+.+..+..+.+++|+|+|... -.+.++..++..|++|.++|+..........++
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~----------IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------------- 245 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGD----------VGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------------- 245 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------------
Confidence 33444444456899999999754 678899999999999999987543322222221
Q ss_pred CCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC---CCChHHHhhcCcEEEEecCC
Q 011654 392 MSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN---ILDVEKLREIGFIVYSIGKP 468 (480)
Q Consensus 392 ~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y~~iG~~ 468 (480)
... .+.+++++++|+++.+|..+.. ++ +...+.|++.++++..-. -++...+........+.-..
T Consensus 246 --------~~~-~~~~e~v~~aDVVI~atG~~~~--i~-~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~ 313 (413)
T cd00401 246 --------YEV-MTMEEAVKEGDIFVTTTGNKDI--IT-GEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQ 313 (413)
T ss_pred --------CEE-ccHHHHHcCCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCC
Confidence 222 2456788999999999987652 22 344567887777766543 24445555555666655444
Q ss_pred C
Q 011654 469 L 469 (480)
Q Consensus 469 ~ 469 (480)
.
T Consensus 314 ~ 314 (413)
T cd00401 314 V 314 (413)
T ss_pred c
Confidence 3
No 469
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.06 E-value=0.22 Score=52.24 Aligned_cols=109 Identities=9% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC--CCCCCCCCCCce
Q 011654 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH--LQPMSPPASKQV 400 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 400 (480)
..-+|+|+|+.| ..+.++..|.+ |.+|.+||..-...+... -+ ..|+. .++... ....+
T Consensus 5 ~~mkI~vIGlGy----------vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G------~~~~~e~~~~~l~-~~g~l 65 (425)
T PRK15182 5 DEVKIAIIGLGY----------VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NG------VDVNLETTEEELR-EARYL 65 (425)
T ss_pred CCCeEEEECcCc----------chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-Cc------CCCCCCCCHHHHH-hhCCe
Confidence 346899999999 78999999776 799999999765433322 01 11110 000000 01223
Q ss_pred eeecCHHHhcccccEEEEEecccc--cccccH-------HHHHHhcCCCCEEEEcCCCCC
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDE--FKTLDY-------QKIFDNMRKPAYIFDGRNILD 451 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~--~~~~~~-------~~~~~~~~~~~~i~D~~~~~~ 451 (480)
...++ .++++++|+++++++-|. ....|. +.+...+++..+|||..-+.+
T Consensus 66 ~~t~~-~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p 124 (425)
T PRK15182 66 KFTSE-IEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP 124 (425)
T ss_pred eEEeC-HHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 44444 457899999999988762 112333 345566676779999877765
No 470
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.06 E-value=0.2 Score=50.41 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=71.0
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHh-hhccccCCCCCCCCCCCCCCCCCceee
Q 011654 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRD-LSMKKFDWDHPIHLQPMSPPASKQVNV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
-++|+|+|.. .....++..|...|++|.+||+.....+.... +. ..|+.-............++++
T Consensus 7 i~~VaVIGaG----------~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~i~~ 73 (321)
T PRK07066 7 IKTFAAIGSG----------VIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA---NAWPALERQGLAPGASPARLRF 73 (321)
T ss_pred CCEEEEECcC----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---HHHHHHHHcCCChhhHHhhcee
Confidence 4789999974 48899999999999999999997543221110 00 0000000000000112346778
Q ss_pred ecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC-CCChHHH
Q 011654 403 VWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN-ILDVEKL 455 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~-~~~~~~~ 455 (480)
.+++++++++||.|+-++.= .+.|.--++++.+.+++. .||+..- -+....+
T Consensus 74 ~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~l 127 (321)
T PRK07066 74 VATIEACVADADFIQESAPEREALKLELHERISRAAKPD-AIIASSTSGLLPTDF 127 (321)
T ss_pred cCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHH
Confidence 88999999999999987653 334444446677776665 5676533 3343333
No 471
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.05 E-value=0.25 Score=48.56 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=59.8
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|-+. .-..+|+..|..+|+.|.+.+-..
T Consensus 146 ~~i~l~Gk~V~ViGrs~---------~vGrpla~lL~~~~atVtv~hs~t------------------------------ 186 (279)
T PRK14178 146 YKISIAGKRAVVVGRSI---------DVGRPMAALLLNADATVTICHSKT------------------------------ 186 (279)
T ss_pred cCCCCCCCEEEEECCCc---------cccHHHHHHHHhCCCeeEEEecCh------------------------------
Confidence 34468999999999753 345778888889999999876421
Q ss_pred CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 187 ------~~L~~~~~~ADIvI~Avgk~~l--v~~~~v----k~GavVIDVg 224 (279)
T PRK14178 187 ------ENLKAELRQADILVSAAGKAGF--ITPDMV----KPGATVIDVG 224 (279)
T ss_pred ------hHHHHHHhhCCEEEECCCcccc--cCHHHc----CCCcEEEEee
Confidence 2467788999999999998876 444444 5667999976
No 472
>PRK07588 hypothetical protein; Provisional
Probab=94.00 E-value=0.057 Score=55.79 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999998 999999998754
No 473
>PRK07538 hypothetical protein; Provisional
Probab=94.00 E-value=0.057 Score=56.30 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||+|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999998 999999999764
No 474
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.99 E-value=0.073 Score=55.11 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999866689999999864
No 475
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.98 E-value=0.27 Score=51.20 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=28.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|+|.|+|+|.-|.++|..|. + |++|+++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence 78999999999999999999 8 9999999954
No 476
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.98 E-value=0.23 Score=48.77 Aligned_cols=70 Identities=16% Similarity=0.327 Sum_probs=52.2
Q ss_pred cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654 2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||- ..+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67899999999987 7899987531 235566678999
Q ss_pred EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|.- .. ..++++|++||+.
T Consensus 203 IvI~AvGk~~~---------i~-----------~~~ik~gaiVIDv 228 (282)
T PRK14182 203 ILVAAIGKAEL---------VK-----------GAWVKEGAVVIDV 228 (282)
T ss_pred EEEEecCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence 99999986521 11 2346789999864
No 477
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.97 E-value=0.2 Score=55.59 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=31.0
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|+|||.|..|++.|..|++. |++|+++|..+.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~ 361 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPE 361 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4899999999999999999998 999999998643
No 478
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.96 E-value=1.9 Score=40.09 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=61.9
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHh----c
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHV----A 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~----~ 77 (480)
+|.-+|+|.-..++..... ..++.+|+++|++++.++..++..... ++ ..++.+ ..|..+.+ .
T Consensus 43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence 5788898772222222111 112468999999999888665321000 00 012222 22332221 4
Q ss_pred cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
..|.||+..... + +..+++.+...++++..++. .+....+.+++.+.+++.+
T Consensus 111 ~~D~V~~~~~~~------------~---~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~g 162 (198)
T PRK00377 111 KFDRIFIGGGSE------------K---LKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENIG 162 (198)
T ss_pred CCCEEEECCCcc------------c---HHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHcC
Confidence 589999864321 1 35667777788888665554 3334455566666666543
No 479
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.46 Score=47.10 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS 393 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
++-++++++|.|+|=|- .-..+|+..|.++ ++.|.+..-..
T Consensus 151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~aTVtvchs~T-------------------------- 195 (297)
T PRK14167 151 AGVDTEGADVVVVGRSD---------IVGKPMANLLIQKADGGNATVTVCHSRT-------------------------- 195 (297)
T ss_pred hCCCCCCCEEEEECCCc---------ccHHHHHHHHhcCccCCCCEEEEeCCCC--------------------------
Confidence 33467999999999543 4567899999888 89999854321
Q ss_pred CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.| ++.+.+ ++.++|||.-
T Consensus 196 ----------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gaiVIDvG 233 (297)
T PRK14167 196 ----------DDLAAKTRRADIVVAAAGVPEL--IDGSML----SEGATVIDVG 233 (297)
T ss_pred ----------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2456778999999999999997 444444 4457999975
No 480
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.93 E-value=0.28 Score=50.24 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=66.4
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
++|+|+|+.- ..-.++..|.++|.+|.+||+...........+ .. ... ...+
T Consensus 1 ~~I~iIG~Gl----------iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~---~~-------------~~~--~~~~ 52 (359)
T PRK06545 1 RTVLIVGLGL----------IGGSLALAIKAAGPDVFIIGYDPSAAQLARALG---FG-------------VID--ELAA 52 (359)
T ss_pred CeEEEEEeCH----------HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhc---CC-------------CCc--cccc
Confidence 4799999854 788899999999998888887665544332211 00 000 1235
Q ss_pred CHHHhcccccEEEEEecccccccccHHHHHH-hcCCCCEEEEcCCCC
Q 011654 405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFD-NMRKPAYIFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~-~~~~~~~i~D~~~~~ 450 (480)
+..++++++|+||++++-+...++ .+++.. .+++..+|.|.-++=
T Consensus 53 ~~~~~~~~aDlVilavP~~~~~~v-l~~l~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 53 DLQRAAAEADLIVLAVPVDATAAL-LAELADLELKPGVIVTDVGSVK 98 (359)
T ss_pred CHHHHhcCCCEEEEeCCHHHHHHH-HHHHhhcCCCCCcEEEeCcccc
Confidence 678889999999999998876542 245654 255567888987764
No 481
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.93 E-value=0.39 Score=45.83 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=58.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---cc
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---AE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---~~ 78 (480)
++|.=|||| |..++..+|+. |.+|++.|.+++-++..+..-. |.++. .+.. +.+.++.. ..
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~---e~gv~--------i~y~-~~~~edl~~~~~~ 124 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHAL---ESGVN--------IDYR-QATVEDLASAGGQ 124 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh---hcccc--------ccch-hhhHHHHHhcCCC
Confidence 356667887 55889999998 9999999999998776553100 01110 0000 11122222 35
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP 130 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
.|+|+.+ ----+ .+|. ++.++...+.++|+.+++. ||+-
T Consensus 125 FDvV~cm-EVlEH--------v~dp---~~~~~~c~~lvkP~G~lf~-STin 163 (243)
T COG2227 125 FDVVTCM-EVLEH--------VPDP---ESFLRACAKLVKPGGILFL-STIN 163 (243)
T ss_pred ccEEEEh-hHHHc--------cCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence 6766544 11111 3443 4567778888999887765 6764
No 482
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.92 E-value=0.1 Score=39.82 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=26.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.-|+..|..|+++ |++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999998 99999999864
No 483
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.92 E-value=0.15 Score=50.02 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
...+|+.+||.- +.-.++..|.+.|++|.+||-..+...-+.+ .+.++
T Consensus 34 s~~~iGFIGLG~----------MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~----------------------~Ga~v 81 (327)
T KOG0409|consen 34 SKTRIGFIGLGN----------MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE----------------------AGARV 81 (327)
T ss_pred ccceeeEEeecc----------chHHHHHHHHHcCCEEEEEeCcHHHHHHHHH----------------------hchhh
Confidence 578999999965 7789999999999999999976655433332 23467
Q ss_pred ecCHHHhcccccEEEEEecccc
Q 011654 403 VWDAYQAAKDAHGVCILTEWDE 424 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~h~~ 424 (480)
.+++.|..+.+|+++.++..+.
T Consensus 82 ~~sPaeVae~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 82 ANSPAEVAEDSDVVITMVPNPK 103 (327)
T ss_pred hCCHHHHHhhcCEEEEEcCChH
Confidence 8899999999999999988764
No 484
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.90 E-value=0.1 Score=55.05 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=56.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC-C-hHHHHHhhcCCCEEE--------ecC
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP-G-LEDVVTQCRGRNLFF--------STD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~-l~~l~~~~~~~~l~~--------t~d 71 (480)
.+|+|||.|.-|+..|..|++. ||.|+++++.+.-.-.+.-|...+..+ . ++..+..+...++++ .-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 4899999999999999999998 999999998765444444443322221 1 111111111112332 224
Q ss_pred HHHHhccCcEEEEeccCCC
Q 011654 72 IEKHVAEADIVFVSVNTPT 90 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~ 90 (480)
.++..++.|.|++|+.+..
T Consensus 202 ~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 202 LEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHhhCEEEEeccccC
Confidence 5666678899999998753
No 485
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.90 E-value=0.21 Score=53.07 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=30.4
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999875
No 486
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=93.88 E-value=0.69 Score=44.62 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=68.8
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHH------HHhhcCCCEEEecC--H
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDV------VTQCRGRNLFFSTD--I 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l------~~~~~~~~l~~t~d--~ 72 (480)
.+|.|||+|-+|.++|.+|+.. |. +++++|-+.-....+++....-.+.|-... +.++ +..+++..- .
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eL-NP~V~V~~i~~r 103 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRL-NPHVSVYDAVTK 103 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHH-CCCcEEEEcccc
Confidence 3799999999999999999998 65 699999876555555543211111121111 1111 122322211 1
Q ss_pred HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654 73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE 135 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
-+.....++++++..+ ++++++.+...++.-.+++..+|..+-|..
T Consensus 104 ld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~ 149 (287)
T PTZ00245 104 LDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA 149 (287)
T ss_pred cCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence 1113466777777542 356677777767767788888888766644
No 487
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.87 E-value=0.36 Score=47.71 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=58.3
Q ss_pred cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+-.+++++|.|+|-+- .-+.+++..|.++|++|.+++...
T Consensus 154 ~i~l~Gk~vvViG~gg---------~vGkpia~~L~~~gatVtv~~~~t------------------------------- 193 (283)
T PRK14192 154 NIELAGKHAVVVGRSA---------ILGKPMAMMLLNANATVTICHSRT------------------------------- 193 (283)
T ss_pred CCCCCCCEEEEECCcH---------HHHHHHHHHHHhCCCEEEEEeCCc-------------------------------
Confidence 3457899999999531 257889999999999999887521
Q ss_pred ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.+++||.||.+|..+.+ ++.+. +++..+|+|.-
T Consensus 194 -----~~L~~~~~~aDIvI~AtG~~~~--v~~~~----lk~gavViDvg 231 (283)
T PRK14192 194 -----QNLPELVKQADIIVGAVGKPEL--IKKDW----IKQGAVVVDAG 231 (283)
T ss_pred -----hhHHHHhccCCEEEEccCCCCc--CCHHH----cCCCCEEEEEE
Confidence 1345667999999999998875 45444 35567999974
No 488
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.86 E-value=0.11 Score=52.94 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=39.9
Q ss_pred EEEEEc-CChhHHHHHHHHHHcCCCCeE---EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654 3 KICCIG-AGYVGGPTMAVIALKCPKIEV---AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V---~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+||| .|++|.-+...|+++ +|.+ ..+..+.+.-+.+. ..+ ..+.+.+ +. +.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~-~~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKI-ESFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCCh-HHhc
Confidence 689999 699999999999886 5653 34444322111111 001 1122221 22 3468
Q ss_pred cCcEEEEeccC
Q 011654 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999874
No 489
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.81 E-value=0.066 Score=55.30 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=31.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|++. |++|+++++.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4799999999999999999998 999999998764
No 490
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.77 E-value=0.092 Score=52.69 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=29.4
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+++|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999986
No 491
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.76 E-value=0.066 Score=55.83 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=31.1
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~ 37 (480)
|||.|||.|.-|+++|..|+++ | ++|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999997 7 49999999764
No 492
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.76 E-value=0.39 Score=51.45 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhh-h---ccccCCCC-CCCCCCCCCCCCC
Q 011654 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDL-S---MKKFDWDH-PIHLQPMSPPASK 398 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~ 398 (480)
-++|+|+|... ....++..|.++|.+|.+||+.....+..... . ....++.. +. ....
T Consensus 4 i~kIavIG~G~----------MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~g 66 (495)
T PRK07531 4 IMKAACIGGGV----------IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL-------PPEG 66 (495)
T ss_pred cCEEEEECcCH----------HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh-------hhhh
Confidence 35899999854 88999999999999999999965443211100 0 00000000 00 0112
Q ss_pred ceeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC-CCChHHH
Q 011654 399 QVNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN-ILDVEKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~-~~~~~~~ 455 (480)
++.+++++.+++++||+|+..+.-+. .+.--++++...+++. .||+..- -++...+
T Consensus 67 ~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l 124 (495)
T PRK07531 67 RLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDL 124 (495)
T ss_pred ceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHH
Confidence 36788899999999999999876653 3332234555554544 5666533 3344444
No 493
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.74 E-value=0.18 Score=55.02 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~ 170 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGP 170 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999998 99999999653
No 494
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.73 E-value=0.39 Score=47.21 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=69.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+|+|+|+.- .+..+++.|.+.|. +|.+||+....-+...+ ..++
T Consensus 3 ~~IgfIG~G~----------MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---------------------~~g~ 51 (272)
T PRK12491 3 KQIGFIGCGN----------MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---------------------KYGI 51 (272)
T ss_pred CeEEEECccH----------HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---------------------hcCc
Confidence 4799999854 88999999998874 69999985433221111 0124
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
...++..+.++++|+|++++.-..+.++- +.+....++..+|||.-.=++-+.+++
T Consensus 52 ~~~~~~~e~~~~aDiIiLavkP~~~~~vl-~~l~~~~~~~~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 52 TITTNNNEVANSADILILSIKPDLYSSVI-NQIKDQIKNDVIVVTIAAGKSIKSTEN 107 (272)
T ss_pred EEeCCcHHHHhhCCEEEEEeChHHHHHHH-HHHHHhhcCCcEEEEeCCCCcHHHHHH
Confidence 45667788889999999999865555422 445544444469999988777776665
No 495
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.72 E-value=0.57 Score=46.93 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=54.2
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCC--CCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCP--KIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~--G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~- 77 (480)
-++||+|+|.|+.-.+..|... | +|+|+ +.|++.++...+.+...- .+.++..++++.++
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~---------------~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNI---------------PNPKAYGSYEELAKD 70 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCC---------------CCCccccCHHHHhcC
Confidence 3799999999999999888643 3 67765 578988887777654211 12456677888665
Q ss_pred -cCcEEEEeccCCCC
Q 011654 78 -EADIVFVSVNTPTK 91 (480)
Q Consensus 78 -~aDvVii~Vptp~~ 91 (480)
++|+|.|+.|+|.+
T Consensus 71 ~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 71 PEVDVVYISTPNPQH 85 (351)
T ss_pred CCcCEEEeCCCCccH
Confidence 45999999998865
No 496
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.70 E-value=0.56 Score=48.73 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=63.1
Q ss_pred cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|... -...++..|...|++|.++|........... .+.
T Consensus 192 ~l~Gk~VvViG~G~----------IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----------------------~G~ 239 (406)
T TIGR00936 192 LIAGKTVVVAGYGW----------CGKGIAMRARGMGARVIVTEVDPIRALEAAM----------------------DGF 239 (406)
T ss_pred CCCcCEEEEECCCH----------HHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----------------------cCC
Confidence 46899999999866 6788999999999999999543222111111 112
Q ss_pred eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654 401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN 448 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.+ .+.+++++++|++|..|..+.. ++ ......|++.++++..-.
T Consensus 240 ~v-~~leeal~~aDVVItaTG~~~v--I~-~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 240 RV-MTMEEAAKIGDIFITATGNKDV--IR-GEHFENMKDGAIVANIGH 283 (406)
T ss_pred Ee-CCHHHHHhcCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEECC
Confidence 22 2567889999999999886552 22 235578888777776544
No 497
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.68 E-value=0.5 Score=46.92 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred EEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 011654 3 KICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISV---SRIAAWN 43 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~ 43 (480)
++.|+|+|-+|.+++..|+.. |.. |++++|++ ++.+.+.
T Consensus 128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 688999999999999999988 775 99999996 5555544
No 498
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.66 E-value=0.083 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|.+|++.|..|++. |++|+++|..+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 6899999999999999999998 89999999765
No 499
>PRK07236 hypothetical protein; Provisional
Probab=93.65 E-value=0.075 Score=54.86 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=31.5
Q ss_pred cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999998 999999998753
No 500
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=93.64 E-value=0.27 Score=50.02 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCEEEEECCCCChH--HHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEeccc
Q 011654 346 AIDVCKGLLGDKAKLSIYDPQVTED--QIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~ 423 (480)
...++..|.++|.+|.+||+.-..- .....+. ..++....+..++++++|+|+++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~-------------------~~Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVE-------------------DAGVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHH-------------------HCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence 4788899999999999999965411 0111111 134566778889999999999999977
Q ss_pred c-cccccHHHHHHhcCCCCEEEEcCCCC
Q 011654 424 E-FKTLDYQKIFDNMRKPAYIFDGRNIL 450 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
. .+++ .+.+...+++..+|+|+..+-
T Consensus 93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~ 119 (342)
T PRK12557 93 KKTVEI-AKNILPHLPENAVICNTCTVS 119 (342)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence 6 4442 246777777677899987654
Done!