Query 011655
Match_columns 480
No_of_seqs 228 out of 1569
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01042 V-ATPase_V1_A V-type 100.0 3E-135 7E-140 1082.9 43.5 465 2-467 19-484 (591)
2 TIGR01043 ATP_syn_A_arch ATP s 100.0 2E-133 4E-138 1072.9 44.8 460 2-467 18-479 (578)
3 PRK04192 V-type ATP synthase s 100.0 2E-132 5E-137 1065.8 44.2 460 2-468 21-483 (586)
4 PRK14698 V-type ATP synthase s 100.0 7E-118 2E-122 1007.5 43.3 459 3-466 22-912 (1017)
5 COG1155 NtpA Archaeal/vacuolar 100.0 2E-118 4E-123 932.1 33.5 463 1-469 18-483 (588)
6 KOG1352 Vacuolar H+-ATPase V1 100.0 2E-118 5E-123 903.6 23.9 467 1-468 37-504 (618)
7 cd01134 V_A-ATPase_A V/A-type 100.0 6E-116 1E-120 892.1 33.0 369 52-424 1-369 (369)
8 COG1157 FliI Flagellar biosynt 100.0 1E-105 3E-110 823.4 32.9 350 2-464 41-395 (441)
9 PRK09280 F0F1 ATP synthase sub 100.0 3E-100 6E-105 804.5 35.3 348 4-464 24-381 (463)
10 TIGR01041 ATP_syn_B_arch ATP s 100.0 8E-100 2E-104 802.9 37.3 360 2-468 19-392 (458)
11 TIGR03324 alt_F1F0_F1_al alter 100.0 6E-100 1E-104 806.0 35.8 355 1-465 44-401 (497)
12 PRK04196 V-type ATP synthase s 100.0 1.4E-99 3E-104 802.5 37.4 360 2-468 21-394 (460)
13 PRK06936 type III secretion sy 100.0 4.9E-99 1E-103 791.4 37.4 351 1-464 39-394 (439)
14 PRK08972 fliI flagellum-specif 100.0 2.1E-98 5E-103 785.2 37.2 352 2-464 42-396 (444)
15 PRK09281 F0F1 ATP synthase sub 100.0 2.3E-98 5E-103 799.2 37.2 354 2-465 45-401 (502)
16 PRK12597 F0F1 ATP synthase sub 100.0 1.8E-98 4E-103 792.4 34.7 350 4-466 24-383 (461)
17 TIGR01039 atpD ATP synthase, F 100.0 2.4E-98 5E-103 787.8 34.8 350 2-464 18-380 (461)
18 TIGR00962 atpA proton transloc 100.0 1.1E-97 2E-102 793.9 36.7 354 2-465 44-400 (501)
19 PRK13343 F0F1 ATP synthase sub 100.0 1.3E-97 3E-102 790.7 36.5 355 1-465 44-401 (502)
20 CHL00059 atpA ATP synthase CF1 100.0 3.7E-97 8E-102 782.0 37.0 354 2-465 24-380 (485)
21 CHL00060 atpB ATP synthase CF1 100.0 4.8E-97 1E-101 782.6 35.8 358 2-465 32-406 (494)
22 TIGR03305 alt_F1F0_F1_bet alte 100.0 8E-97 2E-101 776.5 35.4 348 4-464 20-375 (449)
23 TIGR01040 V-ATPase_V1_B V-type 100.0 3.2E-96 7E-101 770.0 36.2 360 2-468 19-401 (466)
24 PRK08927 fliI flagellum-specif 100.0 7.6E-96 2E-100 767.8 36.3 352 3-464 37-392 (442)
25 PRK07165 F0F1 ATP synthase sub 100.0 1.8E-95 4E-100 771.8 35.2 355 2-465 19-377 (507)
26 PRK02118 V-type ATP synthase s 100.0 4.2E-95 9E-100 759.7 35.5 346 2-464 21-370 (436)
27 PTZ00185 ATPase alpha subunit; 100.0 1.5E-94 3.2E-99 761.2 38.1 363 1-465 59-436 (574)
28 PRK06820 type III secretion sy 100.0 1.4E-94 3E-99 759.3 37.1 351 1-465 45-396 (440)
29 PRK05688 fliI flagellum-specif 100.0 2E-94 4.3E-99 758.7 36.4 352 2-464 44-402 (451)
30 PRK09099 type III secretion sy 100.0 3.3E-94 7.2E-99 757.1 36.4 350 2-464 41-395 (441)
31 TIGR03496 FliI_clade1 flagella 100.0 9E-94 1.9E-98 750.0 36.2 351 2-463 16-370 (411)
32 TIGR03498 FliI_clade3 flagella 100.0 1E-93 2.2E-98 750.1 36.2 351 5-465 21-375 (418)
33 PRK07594 type III secretion sy 100.0 1.4E-93 3.1E-98 750.3 35.9 349 2-464 38-387 (433)
34 TIGR03497 FliI_clade2 flagella 100.0 3.1E-93 6.8E-98 746.3 35.3 349 2-463 16-368 (413)
35 PRK08149 ATP synthase SpaL; Va 100.0 1.5E-92 3.3E-97 741.6 35.9 355 2-465 23-384 (428)
36 PRK08472 fliI flagellum-specif 100.0 1.5E-92 3.2E-97 742.8 35.8 350 2-464 35-389 (434)
37 PRK07960 fliI flagellum-specif 100.0 1.9E-92 4.1E-97 742.3 35.7 352 2-464 44-409 (455)
38 PRK05922 type III secretion sy 100.0 3.7E-92 7.9E-97 739.2 35.7 349 2-465 36-388 (434)
39 TIGR02546 III_secr_ATP type II 100.0 3.1E-90 6.6E-95 726.4 36.0 352 2-464 22-377 (422)
40 PRK07196 fliI flagellum-specif 100.0 3.1E-90 6.7E-95 725.2 35.2 351 2-464 34-388 (434)
41 TIGR01026 fliI_yscN ATPase Fli 100.0 6.8E-89 1.5E-93 718.5 36.4 352 2-465 40-396 (440)
42 PRK06002 fliI flagellum-specif 100.0 2.7E-88 5.8E-93 711.5 34.8 350 3-464 46-398 (450)
43 PRK06793 fliI flagellum-specif 100.0 1.2E-85 2.7E-90 690.2 34.7 352 2-467 38-390 (432)
44 cd01135 V_A-ATPase_B V/A-type 100.0 3.2E-86 6.9E-91 658.1 24.9 236 174-424 33-276 (276)
45 PRK07721 fliI flagellum-specif 100.0 9.9E-85 2.1E-89 686.6 34.3 350 2-464 35-390 (438)
46 cd01133 F1-ATPase_beta F1 ATP 100.0 1.5E-85 3.3E-90 654.0 24.3 237 173-426 32-273 (274)
47 PRK06315 type III secretion sy 100.0 1.8E-84 4E-89 682.9 32.8 353 2-464 40-397 (442)
48 cd01132 F1_ATPase_alpha F1 ATP 100.0 9.8E-85 2.1E-89 647.3 25.0 238 174-424 33-273 (274)
49 cd01136 ATPase_flagellum-secre 100.0 7.3E-82 1.6E-86 642.2 27.8 268 174-464 33-301 (326)
50 COG0056 AtpA F0F1-type ATP syn 100.0 1.1E-79 2.4E-84 632.6 26.1 354 1-465 44-401 (504)
51 COG0055 AtpD F0F1-type ATP syn 100.0 3.2E-78 6.9E-83 611.2 23.3 352 6-467 27-388 (468)
52 COG1156 NtpB Archaeal/vacuolar 100.0 1.3E-73 2.9E-78 581.9 22.4 360 2-467 24-396 (463)
53 PF00006 ATP-synt_ab: ATP synt 100.0 2.5E-69 5.4E-74 522.5 17.2 215 195-422 1-215 (215)
54 PRK12608 transcription termina 100.0 4E-68 8.7E-73 547.2 24.1 298 37-460 56-359 (380)
55 KOG1350 F0F1-type ATP synthase 100.0 1.2E-68 2.6E-73 531.8 13.1 346 15-467 85-438 (521)
56 KOG1351 Vacuolar H+-ATPase V1 100.0 7.3E-67 1.6E-71 514.8 22.2 359 5-469 44-424 (489)
57 PRK09376 rho transcription ter 100.0 4.2E-63 9.1E-68 511.5 25.0 332 57-459 50-394 (416)
58 PRK12678 transcription termina 100.0 5.8E-61 1.3E-65 510.7 22.5 264 156-458 360-640 (672)
59 TIGR00767 rho transcription te 100.0 6.3E-56 1.4E-60 459.8 21.9 238 192-459 151-393 (415)
60 cd01128 rho_factor Transcripti 100.0 1.1E-52 2.3E-57 414.7 22.4 236 196-461 3-243 (249)
61 COG1158 Rho Transcription term 100.0 1.1E-45 2.3E-50 370.3 16.8 231 197-457 161-396 (422)
62 KOG1353 F0F1-type ATP synthase 100.0 2.9E-31 6.3E-36 257.9 6.7 255 2-466 38-302 (340)
63 cd01120 RecA-like_NTPases RecA 99.1 1.7E-09 3.7E-14 96.3 15.7 158 212-404 2-165 (165)
64 COG2256 MGS1 ATPase related to 98.4 5.9E-07 1.3E-11 94.1 7.6 77 207-327 46-122 (436)
65 PF06745 KaiC: KaiC; InterPro 98.2 3.1E-06 6.7E-11 81.8 6.5 179 194-405 2-186 (226)
66 PF02874 ATP-synt_ab_N: ATP sy 98.2 4.2E-06 9E-11 66.7 5.8 47 4-50 19-69 (69)
67 cd01394 radB RadB. The archaea 98.1 2.1E-05 4.6E-10 75.4 11.7 50 193-242 1-54 (218)
68 COG0467 RAD55 RecA-superfamily 98.0 3.2E-05 7E-10 76.6 10.4 186 191-408 3-197 (260)
69 PRK09302 circadian clock prote 98.0 7.2E-05 1.6E-09 81.3 12.9 179 189-405 251-435 (509)
70 smart00382 AAA ATPases associa 97.9 3.5E-05 7.5E-10 65.3 7.0 95 208-328 1-97 (148)
71 PRK06067 flagellar accessory p 97.9 0.0001 2.2E-09 71.8 11.1 67 191-257 5-75 (234)
72 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00021 4.6E-09 71.3 11.7 57 193-249 4-78 (259)
73 TIGR03881 KaiC_arch_4 KaiC dom 97.8 0.00024 5.1E-09 68.7 11.6 64 193-256 2-69 (229)
74 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00042 9.2E-09 68.0 13.0 64 193-256 3-70 (237)
75 KOG2028 ATPase related to the 97.7 7.4E-05 1.6E-09 77.9 7.7 74 211-328 164-241 (554)
76 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00011 2.3E-09 71.1 8.3 117 193-323 1-129 (235)
77 TIGR02655 circ_KaiC circadian 97.7 0.00023 5E-09 77.3 11.7 193 188-420 240-440 (484)
78 PRK04328 hypothetical protein; 97.7 0.00034 7.5E-09 69.4 11.9 65 192-256 4-72 (249)
79 PRK09361 radB DNA repair and r 97.7 0.0011 2.3E-08 64.1 14.3 55 190-244 2-60 (225)
80 PF05496 RuvB_N: Holliday junc 97.7 9.5E-05 2E-09 72.9 7.0 67 212-328 53-120 (233)
81 cd01393 recA_like RecA is a b 97.6 0.0002 4.3E-09 68.8 8.7 40 193-232 1-42 (226)
82 TIGR02236 recomb_radA DNA repa 97.6 0.00018 4E-09 73.1 8.3 119 191-323 75-206 (310)
83 TIGR02012 tigrfam_recA protein 97.5 0.00046 9.9E-09 71.4 9.1 109 191-323 34-147 (321)
84 PRK09354 recA recombinase A; P 97.4 0.00049 1.1E-08 71.9 9.0 110 190-323 38-152 (349)
85 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0028 6.1E-08 61.2 13.6 61 196-256 1-65 (224)
86 PRK09302 circadian clock prote 97.4 0.0015 3.3E-08 71.1 12.8 67 191-257 11-82 (509)
87 TIGR02238 recomb_DMC1 meiotic 97.4 0.00084 1.8E-08 69.2 9.5 120 189-323 74-205 (313)
88 TIGR02237 recomb_radB DNA repa 97.3 0.0024 5.3E-08 60.7 11.6 102 206-325 9-113 (209)
89 PLN03187 meiotic recombination 97.3 0.00061 1.3E-08 71.1 7.8 120 189-323 104-235 (344)
90 TIGR02655 circ_KaiC circadian 97.3 0.0012 2.5E-08 71.8 9.6 66 192-257 2-72 (484)
91 PRK08533 flagellar accessory p 97.2 0.0062 1.4E-07 59.8 13.4 62 195-256 8-73 (230)
92 cd01124 KaiC KaiC is a circadi 97.2 0.0046 1E-07 57.2 11.7 45 212-256 2-48 (187)
93 PTZ00035 Rad51 protein; Provis 97.2 0.0011 2.4E-08 68.9 8.0 124 185-323 92-227 (337)
94 cd00983 recA RecA is a bacter 97.2 0.00068 1.5E-08 70.3 6.3 110 190-323 33-147 (325)
95 TIGR00416 sms DNA repair prote 97.1 0.0041 8.8E-08 67.3 12.2 61 191-251 74-138 (454)
96 PRK11823 DNA repair protein Ra 97.1 0.0062 1.3E-07 65.7 13.0 64 191-254 60-127 (446)
97 cd01121 Sms Sms (bacterial rad 97.0 0.0062 1.3E-07 64.3 12.1 62 190-251 61-126 (372)
98 PRK04301 radA DNA repair and r 97.0 0.0023 5.1E-08 65.5 8.6 119 191-323 82-212 (317)
99 PLN03186 DNA repair protein RA 97.0 0.0034 7.4E-08 65.5 9.5 119 191-324 103-233 (342)
100 COG1155 NtpA Archaeal/vacuolar 97.0 0.0019 4.1E-08 70.0 7.6 185 280-464 288-474 (588)
101 PRK13342 recombination factor 96.9 0.0019 4.1E-08 68.6 7.3 48 209-256 36-83 (413)
102 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0033 7.1E-08 64.9 8.7 118 191-323 76-205 (316)
103 PF00004 AAA: ATPase family as 96.9 0.0055 1.2E-07 52.9 8.7 108 212-379 1-111 (132)
104 cd01122 GP4d_helicase GP4d_hel 96.7 0.012 2.6E-07 58.3 10.1 65 191-255 11-79 (271)
105 PF08423 Rad51: Rad51; InterP 96.6 0.0037 8E-08 62.5 5.8 121 190-325 17-149 (256)
106 PRK09519 recA DNA recombinatio 96.5 0.0047 1E-07 70.7 6.9 108 191-322 39-151 (790)
107 cd00009 AAA The AAA+ (ATPases 96.5 0.021 4.6E-07 48.8 9.4 26 208-233 18-43 (151)
108 PRK13341 recombination factor 96.1 0.0093 2E-07 68.0 6.1 30 206-235 49-78 (725)
109 PF13173 AAA_14: AAA domain 95.9 0.011 2.4E-07 52.3 4.7 24 210-233 3-26 (128)
110 PLN00020 ribulose bisphosphate 95.7 0.017 3.7E-07 61.1 6.0 27 212-238 151-177 (413)
111 COG1124 DppF ABC-type dipeptid 95.5 0.007 1.5E-07 60.3 2.1 33 203-235 27-59 (252)
112 PF00154 RecA: recA bacterial 95.5 0.012 2.5E-07 61.2 3.7 119 191-334 32-155 (322)
113 COG2255 RuvB Holliday junction 95.5 0.015 3.2E-07 59.4 4.3 123 212-408 55-188 (332)
114 cd00544 CobU Adenosylcobinamid 95.5 0.064 1.4E-06 50.5 8.4 87 212-326 2-90 (169)
115 PRK14956 DNA polymerase III su 95.5 0.029 6.3E-07 61.1 6.8 107 211-337 42-150 (484)
116 PRK05973 replicative DNA helic 95.4 0.068 1.5E-06 53.2 8.6 52 205-256 60-113 (237)
117 COG1116 TauB ABC-type nitrate/ 95.2 0.0094 2E-07 59.5 1.8 37 197-233 16-53 (248)
118 PRK14957 DNA polymerase III su 95.2 0.051 1.1E-06 60.2 7.7 22 212-233 41-62 (546)
119 cd03222 ABC_RNaseL_inhibitor T 95.2 0.012 2.6E-07 55.8 2.4 36 199-234 15-50 (177)
120 TIGR01166 cbiO cobalt transpor 95.2 0.011 2.5E-07 55.5 2.2 32 203-234 12-43 (190)
121 PRK14962 DNA polymerase III su 95.1 0.053 1.1E-06 59.1 7.3 22 212-233 39-60 (472)
122 TIGR00635 ruvB Holliday juncti 95.1 0.033 7.2E-07 56.1 5.4 29 209-237 30-58 (305)
123 COG0468 RecA RecA/RadA recombi 95.1 0.024 5.3E-07 57.7 4.4 113 188-325 37-157 (279)
124 TIGR02211 LolD_lipo_ex lipopro 95.0 0.013 2.9E-07 56.2 2.2 32 203-234 25-56 (221)
125 PRK14964 DNA polymerase III su 95.0 0.052 1.1E-06 59.4 7.0 23 210-232 36-58 (491)
126 cd03254 ABCC_Glucan_exporter_l 95.0 0.014 2.9E-07 56.4 2.3 33 202-234 22-54 (229)
127 cd03229 ABC_Class3 This class 95.0 0.014 3.1E-07 54.5 2.2 31 204-234 21-51 (178)
128 cd03292 ABC_FtsE_transporter F 94.9 0.015 3.2E-07 55.5 2.2 34 202-235 20-53 (214)
129 cd03258 ABC_MetN_methionine_tr 94.9 0.015 3.2E-07 56.4 2.2 31 204-234 26-56 (233)
130 PF05729 NACHT: NACHT domain 94.8 0.047 1E-06 48.8 5.1 21 212-232 3-23 (166)
131 cd03225 ABC_cobalt_CbiO_domain 94.8 0.016 3.5E-07 55.2 2.2 31 203-233 21-51 (211)
132 cd03269 ABC_putative_ATPase Th 94.8 0.017 3.6E-07 55.1 2.2 31 203-233 20-50 (210)
133 TIGR00960 3a0501s02 Type II (G 94.8 0.017 3.6E-07 55.4 2.2 32 203-234 23-54 (216)
134 cd03226 ABC_cobalt_CbiO_domain 94.8 0.017 3.6E-07 55.0 2.1 31 204-234 21-51 (205)
135 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.017 3.7E-07 55.3 2.2 31 204-234 25-55 (218)
136 PTZ00454 26S protease regulato 94.7 0.2 4.4E-06 53.4 10.4 29 209-237 179-207 (398)
137 cd03235 ABC_Metallic_Cations A 94.7 0.017 3.7E-07 55.2 2.1 31 204-234 20-50 (213)
138 PRK13540 cytochrome c biogenes 94.7 0.019 4E-07 54.6 2.3 33 202-234 20-52 (200)
139 TIGR02315 ABC_phnC phosphonate 94.7 0.018 4E-07 56.0 2.3 32 203-234 22-53 (243)
140 cd03224 ABC_TM1139_LivF_branch 94.7 0.017 3.7E-07 55.4 2.0 31 203-233 20-50 (222)
141 cd03262 ABC_HisP_GlnQ_permease 94.7 0.018 4E-07 54.8 2.3 30 204-233 21-50 (213)
142 cd03250 ABCC_MRP_domain1 Domai 94.7 0.019 4.1E-07 54.6 2.2 33 202-234 24-56 (204)
143 cd03218 ABC_YhbG The ABC trans 94.6 0.019 4.2E-07 55.5 2.2 30 204-233 21-50 (232)
144 TIGR03608 L_ocin_972_ABC putat 94.6 0.02 4.3E-07 54.3 2.2 33 202-234 17-49 (206)
145 cd03265 ABC_DrrA DrrA is the A 94.6 0.02 4.3E-07 55.0 2.3 35 201-235 18-52 (220)
146 cd03257 ABC_NikE_OppD_transpor 94.6 0.02 4.3E-07 55.0 2.3 32 203-234 25-56 (228)
147 cd03260 ABC_PstB_phosphate_tra 94.6 0.017 3.7E-07 55.7 1.8 31 203-233 20-50 (227)
148 PRK11124 artP arginine transpo 94.6 0.02 4.4E-07 55.8 2.3 32 203-234 22-53 (242)
149 PRK14960 DNA polymerase III su 94.6 0.068 1.5E-06 60.4 6.6 23 211-233 39-61 (702)
150 cd03216 ABC_Carb_Monos_I This 94.6 0.02 4.4E-07 52.9 2.2 32 204-235 21-52 (163)
151 PRK07994 DNA polymerase III su 94.6 0.042 9E-07 62.0 5.0 117 202-338 27-149 (647)
152 PRK08118 topology modulation p 94.6 0.02 4.3E-07 53.5 2.1 26 210-235 2-27 (167)
153 PF13401 AAA_22: AAA domain; P 94.6 0.034 7.3E-07 48.3 3.4 25 209-233 4-28 (131)
154 PF00005 ABC_tran: ABC transpo 94.5 0.014 3.1E-07 51.4 1.0 32 204-235 6-37 (137)
155 cd03261 ABC_Org_Solvent_Resist 94.5 0.021 4.5E-07 55.5 2.2 33 202-234 19-51 (235)
156 cd03215 ABC_Carb_Monos_II This 94.5 0.021 4.4E-07 53.6 2.1 32 203-234 20-51 (182)
157 TIGR03410 urea_trans_UrtE urea 94.5 0.021 4.5E-07 55.2 2.2 33 201-233 18-50 (230)
158 PF13521 AAA_28: AAA domain; P 94.5 0.022 4.7E-07 52.2 2.2 36 211-252 1-36 (163)
159 cd03219 ABC_Mj1267_LivG_branch 94.5 0.02 4.3E-07 55.5 2.1 31 203-233 20-50 (236)
160 cd03230 ABC_DR_subfamily_A Thi 94.5 0.021 4.6E-07 53.0 2.2 32 203-234 20-51 (173)
161 COG4619 ABC-type uncharacteriz 94.5 0.03 6.4E-07 53.6 3.1 33 204-236 24-56 (223)
162 cd03256 ABC_PhnC_transporter A 94.5 0.022 4.7E-07 55.3 2.3 31 203-233 21-51 (241)
163 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.023 5E-07 54.2 2.4 34 201-234 16-49 (211)
164 PRK11331 5-methylcytosine-spec 94.5 0.24 5.1E-06 53.8 10.2 26 208-233 193-218 (459)
165 PF13207 AAA_17: AAA domain; P 94.5 0.018 3.9E-07 49.6 1.5 23 211-233 1-23 (121)
166 cd03296 ABC_CysA_sulfate_impor 94.5 0.022 4.8E-07 55.5 2.3 32 202-233 21-52 (239)
167 cd03295 ABC_OpuCA_Osmoprotecti 94.4 0.023 4.9E-07 55.6 2.2 32 203-234 21-52 (242)
168 PRK13541 cytochrome c biogenes 94.4 0.023 5E-07 53.7 2.2 34 200-233 17-50 (195)
169 cd03259 ABC_Carb_Solutes_like 94.4 0.024 5.1E-07 54.2 2.3 30 204-233 21-50 (213)
170 PF13481 AAA_25: AAA domain; P 94.4 0.086 1.9E-06 49.1 6.0 50 207-256 30-91 (193)
171 COG2874 FlaH Predicted ATPases 94.4 0.35 7.6E-06 47.8 10.3 159 209-405 28-191 (235)
172 PRK13539 cytochrome c biogenes 94.4 0.024 5.1E-07 54.3 2.3 32 202-233 21-52 (207)
173 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.022 4.8E-07 54.7 2.1 31 203-233 24-54 (220)
174 cd03236 ABC_RNaseL_inhibitor_d 94.4 0.025 5.4E-07 56.5 2.4 36 200-235 17-52 (255)
175 PRK10895 lipopolysaccharide AB 94.4 0.024 5.1E-07 55.3 2.3 33 202-234 22-54 (241)
176 TIGR03864 PQQ_ABC_ATP ABC tran 94.4 0.024 5.1E-07 55.2 2.2 31 204-234 22-52 (236)
177 cd00820 PEPCK_HprK Phosphoenol 94.4 0.02 4.2E-07 50.4 1.5 27 204-230 10-36 (107)
178 cd03245 ABCC_bacteriocin_expor 94.4 0.024 5.2E-07 54.3 2.2 31 203-233 24-54 (220)
179 cd03247 ABCC_cytochrome_bd The 94.4 0.025 5.4E-07 52.8 2.2 34 201-234 20-53 (178)
180 cd03301 ABC_MalK_N The N-termi 94.4 0.024 5.3E-07 54.0 2.2 32 203-234 20-51 (213)
181 TIGR02673 FtsE cell division A 94.3 0.025 5.4E-07 54.0 2.3 30 204-233 23-52 (214)
182 cd03238 ABC_UvrA The excision 94.3 0.021 4.5E-07 54.1 1.7 28 203-230 15-42 (176)
183 TIGR02881 spore_V_K stage V sp 94.3 0.2 4.4E-06 49.7 8.8 28 205-232 38-65 (261)
184 PRK11701 phnK phosphonate C-P 94.3 0.025 5.3E-07 55.9 2.2 34 201-234 24-57 (258)
185 PRK10584 putative ABC transpor 94.3 0.026 5.6E-07 54.5 2.3 34 202-235 29-62 (228)
186 cd03231 ABC_CcmA_heme_exporter 94.3 0.026 5.6E-07 53.8 2.2 34 201-234 18-51 (201)
187 PRK00080 ruvB Holliday junctio 94.3 0.067 1.4E-06 55.0 5.4 28 210-237 52-79 (328)
188 cd03223 ABCD_peroxisomal_ALDP 94.3 0.028 6E-07 52.1 2.3 32 202-233 20-51 (166)
189 cd03268 ABC_BcrA_bacitracin_re 94.3 0.026 5.6E-07 53.8 2.2 32 203-234 20-51 (208)
190 PRK14250 phosphate ABC transpo 94.3 0.026 5.6E-07 55.3 2.3 34 201-234 21-54 (241)
191 cd03214 ABC_Iron-Siderophores_ 94.3 0.026 5.7E-07 52.7 2.2 32 203-234 19-50 (180)
192 PRK10908 cell division protein 94.3 0.026 5.7E-07 54.3 2.2 32 204-235 23-54 (222)
193 PRK07261 topology modulation p 94.3 0.028 6.1E-07 52.6 2.4 24 210-233 1-24 (171)
194 PRK14949 DNA polymerase III su 94.2 0.094 2E-06 61.0 7.0 124 212-360 41-174 (944)
195 PRK14255 phosphate ABC transpo 94.2 0.022 4.8E-07 55.9 1.7 29 204-232 26-54 (252)
196 PRK14247 phosphate ABC transpo 94.2 0.023 5E-07 55.7 1.8 31 203-233 23-53 (250)
197 TIGR01184 ntrCD nitrate transp 94.2 0.027 5.8E-07 54.9 2.2 31 204-234 6-36 (230)
198 cd03266 ABC_NatA_sodium_export 94.2 0.027 5.8E-07 53.9 2.2 31 203-233 25-55 (218)
199 PRK11264 putative amino-acid A 94.2 0.028 6E-07 55.1 2.3 32 203-234 23-54 (250)
200 PRK11248 tauB taurine transpor 94.2 0.027 5.8E-07 55.9 2.2 31 203-233 21-51 (255)
201 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.2 0.026 5.6E-07 54.9 2.1 32 202-233 22-53 (238)
202 TIGR01978 sufC FeS assembly AT 94.2 0.024 5.3E-07 55.0 1.8 31 202-232 19-49 (243)
203 cd03246 ABCC_Protease_Secretio 94.2 0.029 6.4E-07 52.1 2.3 31 204-234 23-53 (173)
204 PRK03992 proteasome-activating 94.2 0.29 6.3E-06 51.9 10.0 25 212-236 168-192 (389)
205 PRK14267 phosphate ABC transpo 94.1 0.025 5.3E-07 55.6 1.8 31 203-233 24-54 (253)
206 PRK10575 iron-hydroxamate tran 94.1 0.027 5.8E-07 56.0 2.1 33 202-234 30-62 (265)
207 PRK10771 thiQ thiamine transpo 94.1 0.028 6E-07 54.6 2.1 33 201-233 17-49 (232)
208 PRK15177 Vi polysaccharide exp 94.1 0.028 6.2E-07 54.2 2.2 31 203-233 7-37 (213)
209 PRK10253 iron-enterobactin tra 94.1 0.027 5.9E-07 56.0 2.1 31 204-234 28-58 (265)
210 cd03263 ABC_subfamily_A The AB 94.1 0.029 6.3E-07 53.8 2.2 32 203-234 22-53 (220)
211 PRK13543 cytochrome c biogenes 94.1 0.029 6.2E-07 54.0 2.1 32 202-233 30-61 (214)
212 PRK09493 glnQ glutamine ABC tr 94.1 0.029 6.3E-07 54.7 2.2 33 202-234 20-52 (240)
213 cd03252 ABCC_Hemolysin The ABC 94.1 0.029 6.3E-07 54.5 2.2 32 202-233 21-52 (237)
214 TIGR03005 ectoine_ehuA ectoine 94.1 0.03 6.5E-07 55.1 2.2 33 202-234 19-51 (252)
215 PRK14242 phosphate transporter 94.1 0.025 5.5E-07 55.5 1.7 29 204-232 27-55 (253)
216 PRK15056 manganese/iron transp 94.0 0.029 6.4E-07 56.0 2.2 34 201-234 25-58 (272)
217 cd03251 ABCC_MsbA MsbA is an e 94.0 0.03 6.6E-07 54.2 2.2 32 202-233 21-52 (234)
218 COG3842 PotA ABC-type spermidi 94.0 0.03 6.6E-07 58.7 2.3 38 196-233 17-55 (352)
219 PRK14240 phosphate transporter 94.0 0.026 5.7E-07 55.3 1.8 32 201-232 21-52 (250)
220 PRK10247 putative ABC transpor 94.0 0.031 6.8E-07 54.1 2.3 32 202-233 26-57 (225)
221 TIGR03411 urea_trans_UrtD urea 94.0 0.031 6.7E-07 54.5 2.2 30 204-233 23-52 (242)
222 TIGR03771 anch_rpt_ABC anchore 94.0 0.032 7E-07 54.0 2.3 30 205-234 2-31 (223)
223 cd03290 ABCC_SUR1_N The SUR do 94.0 0.031 6.7E-07 53.7 2.2 30 204-233 22-51 (218)
224 PRK14274 phosphate ABC transpo 94.0 0.027 5.9E-07 55.6 1.8 31 203-233 32-62 (259)
225 PRK14961 DNA polymerase III su 94.0 0.1 2.2E-06 54.7 6.1 22 212-233 41-62 (363)
226 TIGR01188 drrA daunorubicin re 94.0 0.032 6.9E-07 56.8 2.3 32 203-234 13-44 (302)
227 PRK11629 lolD lipoprotein tran 94.0 0.032 7E-07 54.2 2.2 32 203-234 29-60 (233)
228 PRK14248 phosphate ABC transpo 94.0 0.028 6E-07 56.0 1.8 29 204-232 42-70 (268)
229 TIGR02323 CP_lyasePhnK phospho 94.0 0.033 7.1E-07 54.8 2.2 34 202-235 22-55 (253)
230 PF13671 AAA_33: AAA domain; P 93.9 0.41 8.8E-06 42.2 9.1 23 212-234 2-24 (143)
231 PRK13538 cytochrome c biogenes 93.9 0.034 7.3E-07 53.0 2.3 34 201-234 19-52 (204)
232 TIGR03740 galliderm_ABC gallid 93.9 0.033 7.2E-07 53.6 2.2 31 204-234 21-51 (223)
233 cd03267 ABC_NatA_like Similar 93.9 0.032 7E-07 54.5 2.2 32 203-234 41-72 (236)
234 PRK14262 phosphate ABC transpo 93.9 0.028 6.1E-07 55.1 1.8 30 203-232 23-52 (250)
235 PRK11247 ssuB aliphatic sulfon 93.9 0.033 7.1E-07 55.6 2.2 33 202-234 31-63 (257)
236 cd03248 ABCC_TAP TAP, the Tran 93.9 0.034 7.4E-07 53.6 2.3 30 204-233 35-64 (226)
237 PRK11831 putative ABC transpor 93.9 0.034 7.3E-07 55.5 2.2 34 201-234 25-58 (269)
238 PRK08181 transposase; Validate 93.9 0.059 1.3E-06 54.6 3.9 26 207-232 104-129 (269)
239 TIGR01242 26Sp45 26S proteasom 93.9 0.33 7.2E-06 50.6 9.7 26 212-237 159-184 (364)
240 PRK14239 phosphate transporter 93.8 0.03 6.5E-07 54.9 1.7 30 203-232 25-54 (252)
241 TIGR02770 nickel_nikD nickel i 93.8 0.035 7.6E-07 53.9 2.2 32 203-234 6-37 (230)
242 PRK13648 cbiO cobalt transport 93.8 0.035 7.6E-07 55.3 2.2 34 201-234 27-60 (269)
243 cd03115 SRP The signal recogni 93.8 0.49 1.1E-05 43.6 9.7 44 212-255 3-48 (173)
244 PRK13649 cbiO cobalt transport 93.8 0.034 7.5E-07 55.6 2.2 32 203-234 27-58 (280)
245 PRK10851 sulfate/thiosulfate t 93.8 0.034 7.5E-07 58.2 2.2 34 201-234 20-53 (353)
246 PRK06645 DNA polymerase III su 93.8 0.13 2.9E-06 56.5 6.8 24 210-233 44-67 (507)
247 PRK13641 cbiO cobalt transport 93.8 0.035 7.5E-07 56.1 2.2 34 202-235 26-59 (287)
248 cd03228 ABCC_MRP_Like The MRP 93.8 0.038 8.1E-07 51.3 2.2 31 204-234 23-53 (171)
249 TIGR02324 CP_lyasePhnL phospho 93.8 0.037 8.1E-07 53.3 2.3 33 202-234 27-59 (224)
250 PRK05800 cobU adenosylcobinami 93.8 0.19 4.1E-06 47.3 7.0 43 211-254 3-46 (170)
251 PRK09544 znuC high-affinity zi 93.8 0.036 7.8E-07 55.0 2.2 31 203-233 24-54 (251)
252 PRK11144 modC molybdate transp 93.8 0.04 8.7E-07 57.5 2.6 35 200-234 15-49 (352)
253 TIGR01288 nodI ATP-binding ABC 93.7 0.036 7.9E-07 56.3 2.2 32 203-234 24-55 (303)
254 TIGR00678 holB DNA polymerase 93.7 0.14 3.1E-06 48.0 6.1 23 210-232 15-37 (188)
255 PRK14273 phosphate ABC transpo 93.7 0.033 7.1E-07 54.9 1.8 31 204-234 28-58 (254)
256 PRK13638 cbiO cobalt transport 93.7 0.036 7.8E-07 55.3 2.1 33 202-234 20-52 (271)
257 cd03233 ABC_PDR_domain1 The pl 93.7 0.03 6.4E-07 53.5 1.5 32 203-234 27-58 (202)
258 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.033 7.2E-07 53.0 1.8 31 202-232 19-49 (200)
259 cd01125 repA Hexameric Replica 93.7 0.27 5.8E-06 48.1 8.2 23 209-231 1-23 (239)
260 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.04 8.7E-07 52.5 2.3 31 203-233 28-58 (207)
261 COG1134 TagH ABC-type polysacc 93.7 0.037 8.1E-07 55.3 2.1 33 201-233 45-77 (249)
262 TIGR03015 pepcterm_ATPase puta 93.7 0.16 3.5E-06 49.9 6.6 27 208-234 41-68 (269)
263 PRK13645 cbiO cobalt transport 93.7 0.037 8E-07 55.8 2.1 32 203-234 31-62 (289)
264 PRK13632 cbiO cobalt transport 93.7 0.039 8.4E-07 55.1 2.3 31 204-234 30-60 (271)
265 PRK12377 putative replication 93.7 0.11 2.5E-06 51.9 5.5 24 210-233 102-125 (248)
266 PRK14241 phosphate transporter 93.7 0.033 7.2E-07 55.0 1.7 31 203-233 24-54 (258)
267 PRK13548 hmuV hemin importer A 93.7 0.038 8.3E-07 54.8 2.2 30 204-233 23-52 (258)
268 PRK11300 livG leucine/isoleuci 93.7 0.037 8E-07 54.3 2.0 32 203-234 25-56 (255)
269 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.04 8.6E-07 50.0 2.1 32 204-235 21-52 (144)
270 TIGR02769 nickel_nikE nickel i 93.6 0.041 8.9E-07 54.7 2.3 34 201-234 29-62 (265)
271 cd03253 ABCC_ATM1_transporter 93.6 0.041 8.8E-07 53.4 2.2 33 201-233 19-51 (236)
272 PRK09984 phosphonate/organopho 93.6 0.04 8.6E-07 54.6 2.2 32 203-234 24-55 (262)
273 COG3839 MalK ABC-type sugar tr 93.6 0.035 7.6E-07 58.0 1.8 31 202-232 22-52 (338)
274 PF00931 NB-ARC: NB-ARC domain 93.6 0.12 2.6E-06 51.1 5.6 43 207-249 17-63 (287)
275 COG1222 RPT1 ATP-dependent 26S 93.6 0.071 1.5E-06 56.1 4.0 44 212-255 188-238 (406)
276 TIGR03689 pup_AAA proteasome A 93.6 0.11 2.3E-06 57.3 5.6 24 211-234 218-241 (512)
277 TIGR00968 3a0106s01 sulfate AB 93.6 0.041 9E-07 53.7 2.2 30 204-233 21-50 (237)
278 PRK11614 livF leucine/isoleuci 93.6 0.038 8.3E-07 53.7 2.0 30 204-233 26-55 (237)
279 TIGR00972 3a0107s01c2 phosphat 93.6 0.041 9E-07 53.9 2.2 32 202-233 20-51 (247)
280 PRK14237 phosphate transporter 93.6 0.036 7.9E-07 55.2 1.8 31 203-233 40-70 (267)
281 PRK15093 antimicrobial peptide 93.6 0.036 7.7E-07 57.3 1.8 36 198-233 21-57 (330)
282 PRK10619 histidine/lysine/argi 93.6 0.042 9E-07 54.3 2.2 32 203-234 25-56 (257)
283 PRK11650 ugpC glycerol-3-phosp 93.5 0.041 8.8E-07 57.7 2.2 35 201-235 22-56 (356)
284 PRK13646 cbiO cobalt transport 93.5 0.041 9E-07 55.5 2.2 32 203-234 27-58 (286)
285 PHA02544 44 clamp loader, smal 93.5 0.18 3.8E-06 51.1 6.8 27 212-238 45-72 (316)
286 TIGR01189 ccmA heme ABC export 93.5 0.044 9.5E-07 51.9 2.2 32 202-233 19-50 (198)
287 PF04665 Pox_A32: Poxvirus A32 93.5 0.16 3.5E-06 50.8 6.3 44 211-254 15-59 (241)
288 PRK14270 phosphate ABC transpo 93.5 0.037 8E-07 54.4 1.8 29 204-232 25-53 (251)
289 PRK11432 fbpC ferric transport 93.5 0.041 8.9E-07 57.6 2.2 33 202-234 25-57 (351)
290 PRK14974 cell division protein 93.5 0.22 4.9E-06 52.0 7.6 26 207-232 138-163 (336)
291 PRK14266 phosphate ABC transpo 93.5 0.037 8.1E-07 54.2 1.8 32 201-232 21-52 (250)
292 PRK14256 phosphate ABC transpo 93.5 0.038 8.3E-07 54.3 1.9 30 204-233 25-54 (252)
293 cd03300 ABC_PotA_N PotA is an 93.5 0.045 9.8E-07 53.2 2.3 32 203-234 20-51 (232)
294 cd03294 ABC_Pro_Gly_Bertaine T 93.5 0.043 9.4E-07 54.8 2.3 33 202-234 43-75 (269)
295 COG1484 DnaC DNA replication p 93.5 0.16 3.4E-06 50.9 6.3 26 208-233 104-129 (254)
296 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.045 9.8E-07 54.2 2.3 29 205-233 21-49 (246)
297 cd03264 ABC_drug_resistance_li 93.5 0.044 9.5E-07 52.3 2.2 30 203-233 20-49 (211)
298 cd03213 ABCG_EPDR ABCG transpo 93.5 0.045 9.8E-07 51.9 2.2 32 202-233 28-59 (194)
299 PRK14245 phosphate ABC transpo 93.5 0.037 8.1E-07 54.3 1.7 30 202-231 22-51 (250)
300 CHL00131 ycf16 sulfate ABC tra 93.5 0.036 7.8E-07 54.3 1.6 29 204-232 28-56 (252)
301 PRK14249 phosphate ABC transpo 93.5 0.043 9.4E-07 53.9 2.1 32 203-234 24-55 (251)
302 PRK10744 pstB phosphate transp 93.4 0.039 8.4E-07 54.7 1.8 31 203-233 33-63 (260)
303 TIGR03265 PhnT2 putative 2-ami 93.4 0.043 9.4E-07 57.4 2.2 33 202-234 23-55 (353)
304 TIGR01277 thiQ thiamine ABC tr 93.4 0.045 9.8E-07 52.4 2.2 34 201-234 16-49 (213)
305 TIGR01618 phage_P_loop phage n 93.4 0.38 8.3E-06 47.4 8.6 20 211-230 14-33 (220)
306 CHL00195 ycf46 Ycf46; Provisio 93.4 0.16 3.6E-06 55.5 6.7 44 212-255 262-312 (489)
307 PRK14251 phosphate ABC transpo 93.4 0.04 8.7E-07 54.1 1.8 32 202-233 23-54 (251)
308 PRK10419 nikE nickel transport 93.4 0.047 1E-06 54.5 2.2 33 201-233 30-62 (268)
309 PRK14272 phosphate ABC transpo 93.4 0.042 9E-07 53.9 1.8 30 204-233 25-54 (252)
310 PRK14260 phosphate ABC transpo 93.4 0.041 8.8E-07 54.5 1.8 31 203-233 27-57 (259)
311 PRK14244 phosphate ABC transpo 93.4 0.041 8.9E-07 54.1 1.8 31 202-232 24-54 (251)
312 PRK14246 phosphate ABC transpo 93.4 0.047 1E-06 54.3 2.2 33 202-234 29-61 (257)
313 PRK14243 phosphate transporter 93.3 0.042 9.1E-07 54.7 1.9 31 202-232 29-59 (264)
314 cd03244 ABCC_MRP_domain2 Domai 93.3 0.05 1.1E-06 52.2 2.3 32 202-233 23-54 (221)
315 PRK10418 nikD nickel transport 93.3 0.049 1.1E-06 53.8 2.2 33 202-234 22-54 (254)
316 PRK14269 phosphate ABC transpo 93.3 0.042 9.1E-07 53.9 1.8 32 201-232 20-51 (246)
317 TIGR02880 cbbX_cfxQ probable R 93.3 0.54 1.2E-05 47.7 9.8 24 209-232 58-81 (284)
318 cd03299 ABC_ModC_like Archeal 93.3 0.049 1.1E-06 53.1 2.2 32 203-234 19-50 (235)
319 PRK13643 cbiO cobalt transport 93.3 0.046 1E-06 55.2 2.1 33 201-233 24-56 (288)
320 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.3 0.049 1.1E-06 52.9 2.2 32 203-234 42-73 (224)
321 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.051 1.1E-06 49.5 2.2 35 201-235 17-51 (157)
322 cd03234 ABCG_White The White s 93.3 0.042 9.1E-07 53.1 1.7 33 202-234 26-58 (226)
323 PRK13547 hmuV hemin importer A 93.3 0.049 1.1E-06 54.8 2.2 31 203-233 21-51 (272)
324 PRK14253 phosphate ABC transpo 93.3 0.044 9.6E-07 53.7 1.8 30 204-233 24-53 (249)
325 PRK14265 phosphate ABC transpo 93.3 0.043 9.2E-07 55.0 1.8 31 202-232 39-69 (274)
326 PRK10078 ribose 1,5-bisphospho 93.3 0.06 1.3E-06 50.7 2.7 29 208-236 1-29 (186)
327 PRK14261 phosphate ABC transpo 93.2 0.044 9.4E-07 53.9 1.8 29 204-232 27-55 (253)
328 PRK14268 phosphate ABC transpo 93.2 0.043 9.4E-07 54.3 1.7 32 202-233 31-62 (258)
329 PRK14238 phosphate transporter 93.2 0.044 9.6E-07 54.8 1.8 31 203-233 44-74 (271)
330 COG3638 ABC-type phosphate/pho 93.2 0.096 2.1E-06 52.3 4.1 54 203-256 24-82 (258)
331 PRK11231 fecE iron-dicitrate t 93.2 0.049 1.1E-06 53.7 2.1 30 204-233 23-52 (255)
332 KOG0733 Nuclear AAA ATPase (VC 93.2 0.21 4.5E-06 55.8 6.9 136 212-360 226-411 (802)
333 PRK12323 DNA polymerase III su 93.2 0.18 3.9E-06 57.0 6.6 130 211-360 40-179 (700)
334 cd00227 CPT Chloramphenicol (C 93.2 0.22 4.8E-06 46.3 6.3 27 208-234 1-27 (175)
335 PRK13647 cbiO cobalt transport 93.2 0.051 1.1E-06 54.5 2.1 31 204-234 26-56 (274)
336 PRK15112 antimicrobial peptide 93.2 0.053 1.1E-06 54.1 2.3 34 201-234 31-64 (267)
337 PF01637 Arch_ATPase: Archaeal 93.2 0.028 6.1E-07 52.9 0.3 27 207-233 18-44 (234)
338 PRK11308 dppF dipeptide transp 93.2 0.044 9.6E-07 56.7 1.8 32 202-233 34-65 (327)
339 PRK14271 phosphate ABC transpo 93.2 0.045 9.9E-07 55.0 1.8 33 201-233 39-71 (276)
340 PRK13639 cbiO cobalt transport 93.1 0.051 1.1E-06 54.4 2.1 33 201-233 20-52 (275)
341 PRK14951 DNA polymerase III su 93.1 0.14 3.1E-06 57.5 5.8 55 306-360 121-179 (618)
342 PRK13637 cbiO cobalt transport 93.1 0.052 1.1E-06 54.9 2.1 32 203-234 27-58 (287)
343 PF07088 GvpD: GvpD gas vesicl 93.1 0.34 7.3E-06 51.8 8.1 50 203-252 4-54 (484)
344 PRK13640 cbiO cobalt transport 93.1 0.052 1.1E-06 54.6 2.1 31 203-233 27-57 (282)
345 PRK00411 cdc6 cell division co 93.1 0.17 3.8E-06 52.7 6.1 39 207-245 53-95 (394)
346 PRK13546 teichoic acids export 93.1 0.054 1.2E-06 54.3 2.2 33 201-233 42-74 (264)
347 cd03291 ABCC_CFTR1 The CFTR su 93.1 0.054 1.2E-06 54.9 2.2 33 201-233 55-87 (282)
348 PRK13537 nodulation ABC transp 93.1 0.055 1.2E-06 55.4 2.2 34 203-236 27-60 (306)
349 PRK14264 phosphate ABC transpo 93.1 0.047 1E-06 55.7 1.7 32 202-233 64-95 (305)
350 TIGR03873 F420-0_ABC_ATP propo 93.0 0.054 1.2E-06 53.4 2.1 31 204-234 22-52 (256)
351 COG1120 FepC ABC-type cobalami 93.0 0.049 1.1E-06 54.9 1.8 33 202-234 21-53 (258)
352 PRK14236 phosphate transporter 93.0 0.049 1.1E-06 54.5 1.8 30 203-232 45-74 (272)
353 PRK14969 DNA polymerase III su 93.0 0.18 3.9E-06 55.7 6.3 22 212-233 41-62 (527)
354 PRK09473 oppD oligopeptide tra 93.0 0.044 9.5E-07 56.8 1.5 31 203-233 36-66 (330)
355 TIGR02982 heterocyst_DevA ABC 93.0 0.059 1.3E-06 51.9 2.3 31 203-233 25-55 (220)
356 PRK13644 cbiO cobalt transport 93.0 0.056 1.2E-06 54.2 2.2 34 201-234 20-53 (274)
357 PRK13650 cbiO cobalt transport 93.0 0.056 1.2E-06 54.3 2.2 33 201-233 25-57 (279)
358 TIGR02314 ABC_MetN D-methionin 93.0 0.056 1.2E-06 56.5 2.2 34 202-235 24-57 (343)
359 PRK14259 phosphate ABC transpo 93.0 0.049 1.1E-06 54.4 1.8 30 203-232 33-62 (269)
360 COG1126 GlnQ ABC-type polar am 93.0 0.051 1.1E-06 53.7 1.7 29 204-232 23-51 (240)
361 PTZ00361 26 proteosome regulat 93.0 0.5 1.1E-05 51.1 9.4 26 211-236 219-244 (438)
362 PRK14275 phosphate ABC transpo 92.9 0.05 1.1E-06 54.9 1.7 32 201-232 57-88 (286)
363 PRK15079 oligopeptide ABC tran 92.9 0.05 1.1E-06 56.4 1.7 36 198-233 35-71 (331)
364 TIGR02868 CydC thiol reductant 92.9 0.058 1.2E-06 58.8 2.3 34 202-235 354-387 (529)
365 COG4167 SapF ABC-type antimicr 92.9 0.05 1.1E-06 52.8 1.5 30 203-232 33-62 (267)
366 PRK11000 maltose/maltodextrin 92.9 0.057 1.2E-06 56.8 2.2 32 202-233 22-53 (369)
367 PRK07940 DNA polymerase III su 92.9 0.33 7.2E-06 51.8 7.9 25 208-232 35-59 (394)
368 PRK09580 sufC cysteine desulfu 92.9 0.05 1.1E-06 53.1 1.6 29 204-232 22-50 (248)
369 cd03297 ABC_ModC_molybdenum_tr 92.9 0.064 1.4E-06 51.3 2.3 33 201-234 16-48 (214)
370 PRK13651 cobalt transporter AT 92.9 0.059 1.3E-06 55.2 2.1 32 202-233 26-57 (305)
371 PRK13652 cbiO cobalt transport 92.9 0.061 1.3E-06 54.0 2.2 32 203-234 24-55 (277)
372 PRK14235 phosphate transporter 92.9 0.054 1.2E-06 54.0 1.8 31 203-233 39-69 (267)
373 PRK13634 cbiO cobalt transport 92.9 0.059 1.3E-06 54.5 2.1 31 204-234 28-58 (290)
374 cd03232 ABC_PDR_domain2 The pl 92.8 0.053 1.2E-06 51.3 1.7 29 204-232 28-56 (192)
375 TIGR03522 GldA_ABC_ATP gliding 92.8 0.06 1.3E-06 54.8 2.1 31 203-233 22-52 (301)
376 PRK13635 cbiO cobalt transport 92.8 0.062 1.3E-06 54.1 2.2 32 203-234 27-58 (279)
377 PRK14252 phosphate ABC transpo 92.8 0.055 1.2E-06 53.7 1.8 33 201-233 34-66 (265)
378 PRK13536 nodulation factor exp 92.8 0.063 1.4E-06 55.9 2.3 33 203-235 61-93 (340)
379 PRK08691 DNA polymerase III su 92.8 0.22 4.7E-06 56.7 6.6 24 210-233 39-62 (709)
380 PRK14254 phosphate ABC transpo 92.8 0.055 1.2E-06 54.7 1.8 30 204-233 60-89 (285)
381 PRK10636 putative ABC transpor 92.8 0.062 1.3E-06 60.5 2.3 34 201-234 19-52 (638)
382 COG4987 CydC ABC-type transpor 92.8 0.068 1.5E-06 58.7 2.5 34 203-236 358-391 (573)
383 PRK09452 potA putrescine/sperm 92.7 0.061 1.3E-06 56.8 2.1 32 202-233 33-64 (375)
384 PRK14958 DNA polymerase III su 92.7 0.2 4.3E-06 55.2 6.1 23 211-233 40-62 (509)
385 CHL00181 cbbX CbbX; Provisiona 92.7 0.79 1.7E-05 46.7 10.1 28 205-232 55-82 (287)
386 cd02027 APSK Adenosine 5'-phos 92.7 0.4 8.7E-06 43.7 7.2 22 212-233 2-23 (149)
387 PRK03695 vitamin B12-transport 92.7 0.054 1.2E-06 53.4 1.6 33 201-233 14-46 (248)
388 PRK13633 cobalt transporter AT 92.7 0.066 1.4E-06 53.8 2.2 33 202-234 29-61 (280)
389 cd03288 ABCC_SUR2 The SUR doma 92.7 0.058 1.2E-06 53.4 1.8 30 204-233 42-71 (257)
390 PRK11022 dppD dipeptide transp 92.7 0.055 1.2E-06 55.9 1.6 36 198-233 21-57 (326)
391 COG4172 ABC-type uncharacteriz 92.7 0.13 2.9E-06 55.0 4.4 37 197-233 300-337 (534)
392 PRK13642 cbiO cobalt transport 92.6 0.066 1.4E-06 53.7 2.1 30 204-233 28-57 (277)
393 TIGR02142 modC_ABC molybdenum 92.6 0.076 1.7E-06 55.4 2.6 34 201-234 15-48 (354)
394 TIGR00665 DnaB replicative DNA 92.6 0.11 2.5E-06 55.3 4.0 62 191-252 176-241 (434)
395 PF03796 DnaB_C: DnaB-like hel 92.6 0.099 2.1E-06 51.7 3.3 60 193-252 2-65 (259)
396 PRK11607 potG putrescine trans 92.6 0.067 1.5E-06 56.5 2.1 33 202-234 38-70 (377)
397 cd03289 ABCC_CFTR2 The CFTR su 92.5 0.063 1.4E-06 54.2 1.8 30 204-233 25-54 (275)
398 PRK11153 metN DL-methionine tr 92.5 0.07 1.5E-06 55.5 2.2 33 202-234 24-56 (343)
399 COG0563 Adk Adenylate kinase a 92.5 0.06 1.3E-06 51.1 1.5 22 211-232 2-23 (178)
400 COG1136 SalX ABC-type antimicr 92.4 0.071 1.5E-06 52.8 1.9 35 198-232 19-54 (226)
401 PRK14258 phosphate ABC transpo 92.4 0.066 1.4E-06 53.1 1.8 33 202-234 26-58 (261)
402 PRK05541 adenylylsulfate kinas 92.4 0.51 1.1E-05 43.7 7.6 29 205-233 3-31 (176)
403 PRK14263 phosphate ABC transpo 92.4 0.067 1.4E-06 53.3 1.8 32 202-233 27-58 (261)
404 COG3840 ThiQ ABC-type thiamine 92.4 0.11 2.3E-06 50.5 3.0 32 202-233 18-49 (231)
405 PRK10416 signal recognition pa 92.4 0.42 9E-06 49.5 7.6 26 207-232 112-137 (318)
406 PRK11147 ABC transporter ATPas 92.4 0.072 1.6E-06 59.8 2.2 34 202-235 22-55 (635)
407 TIGR03258 PhnT 2-aminoethylpho 92.4 0.076 1.6E-06 55.9 2.2 32 202-233 24-55 (362)
408 PRK14955 DNA polymerase III su 92.4 0.27 5.8E-06 52.2 6.3 21 212-232 41-61 (397)
409 PRK14530 adenylate kinase; Pro 92.3 0.085 1.8E-06 50.8 2.3 27 208-234 2-28 (215)
410 PRK14531 adenylate kinase; Pro 92.2 0.086 1.9E-06 49.6 2.2 24 210-233 3-26 (183)
411 TIGR01243 CDC48 AAA family ATP 92.2 0.19 4.2E-06 57.4 5.5 31 207-237 210-240 (733)
412 KOG0727 26S proteasome regulat 92.2 0.15 3.2E-06 51.7 3.9 47 209-255 189-242 (408)
413 COG4608 AppF ABC-type oligopep 92.2 0.076 1.6E-06 53.8 1.8 60 197-256 26-95 (268)
414 PF13238 AAA_18: AAA domain; P 92.1 0.059 1.3E-06 46.2 0.9 22 212-233 1-22 (129)
415 PRK06921 hypothetical protein; 92.1 0.19 4.1E-06 50.7 4.6 26 208-233 116-141 (266)
416 PRK13636 cbiO cobalt transport 92.1 0.086 1.9E-06 53.1 2.2 34 201-234 24-57 (283)
417 TIGR01526 nadR_NMN_Atrans nico 92.1 0.49 1.1E-05 49.1 7.8 90 209-328 162-251 (325)
418 PRK13631 cbiO cobalt transport 92.1 0.086 1.9E-06 54.4 2.2 30 204-233 47-76 (320)
419 COG4525 TauB ABC-type taurine 92.1 0.095 2.1E-06 51.3 2.3 34 201-234 23-56 (259)
420 PRK14257 phosphate ABC transpo 92.1 0.075 1.6E-06 55.1 1.7 32 202-233 101-132 (329)
421 PRK10762 D-ribose transporter 92.1 0.082 1.8E-06 57.5 2.1 32 202-233 23-54 (501)
422 PF07728 AAA_5: AAA domain (dy 92.0 0.083 1.8E-06 46.8 1.7 42 212-255 2-43 (139)
423 PRK11176 lipid transporter ATP 92.0 0.09 2E-06 57.9 2.4 35 201-235 361-395 (582)
424 PLN03073 ABC transporter F fam 92.0 0.074 1.6E-06 60.8 1.7 31 201-231 195-225 (718)
425 PRK09536 btuD corrinoid ABC tr 92.0 0.084 1.8E-06 56.4 2.0 30 204-233 24-53 (402)
426 PRK07003 DNA polymerase III su 92.0 0.27 5.8E-06 56.5 6.0 24 211-234 40-63 (830)
427 TIGR01186 proV glycine betaine 92.0 0.086 1.9E-06 55.5 2.1 34 202-235 12-45 (363)
428 PRK15064 ABC transporter ATP-b 91.9 0.092 2E-06 57.5 2.3 32 202-233 20-51 (530)
429 TIGR03263 guanyl_kin guanylate 91.9 0.082 1.8E-06 48.9 1.7 25 209-233 1-25 (180)
430 PRK08233 hypothetical protein; 91.9 0.13 2.8E-06 47.2 3.0 25 209-233 3-27 (182)
431 PF08477 Miro: Miro-like prote 91.9 0.084 1.8E-06 45.0 1.6 23 211-233 1-23 (119)
432 PRK00300 gmk guanylate kinase; 91.9 0.087 1.9E-06 49.8 1.8 28 207-234 3-30 (205)
433 TIGR00235 udk uridine kinase. 91.9 0.078 1.7E-06 50.8 1.5 26 208-233 5-30 (207)
434 PRK06217 hypothetical protein; 91.9 0.11 2.3E-06 48.8 2.4 25 210-234 2-26 (183)
435 PRK11819 putative ABC transpor 91.8 0.097 2.1E-06 57.8 2.3 32 202-233 26-57 (556)
436 COG1066 Sms Predicted ATP-depe 91.8 0.27 5.9E-06 52.7 5.5 57 193-249 75-134 (456)
437 PRK05480 uridine/cytidine kina 91.8 0.14 3E-06 48.9 3.1 27 207-233 4-30 (209)
438 COG1127 Ttg2A ABC-type transpo 91.8 0.1 2.2E-06 52.3 2.2 34 203-236 28-61 (263)
439 TIGR02928 orc1/cdc6 family rep 91.8 0.49 1.1E-05 48.8 7.3 26 207-232 38-63 (365)
440 COG4555 NatA ABC-type Na+ tran 91.8 0.13 2.7E-06 50.6 2.8 36 201-236 20-55 (245)
441 COG0488 Uup ATPase components 91.7 0.097 2.1E-06 57.9 2.2 34 201-234 21-54 (530)
442 TIGR00602 rad24 checkpoint pro 91.7 0.18 3.8E-06 57.0 4.3 32 202-233 103-134 (637)
443 cd00984 DnaB_C DnaB helicase C 91.7 0.16 3.4E-06 49.3 3.4 49 206-254 10-61 (242)
444 TIGR03269 met_CoM_red_A2 methy 91.7 0.086 1.9E-06 57.5 1.8 31 202-232 19-49 (520)
445 PRK10938 putative molybdenum t 91.6 0.1 2.2E-06 56.5 2.2 35 199-233 18-53 (490)
446 COG4181 Predicted ABC-type tra 91.6 0.094 2E-06 50.4 1.7 30 204-233 31-60 (228)
447 PRK09183 transposase/IS protei 91.6 0.077 1.7E-06 53.1 1.2 28 205-232 98-125 (259)
448 PRK10636 putative ABC transpor 91.6 0.1 2.2E-06 58.7 2.3 32 202-233 331-362 (638)
449 PRK14948 DNA polymerase III su 91.6 0.36 7.8E-06 54.4 6.5 24 210-233 39-62 (620)
450 TIGR02322 phosphon_PhnN phosph 91.5 0.097 2.1E-06 48.5 1.7 25 209-233 1-25 (179)
451 cd01428 ADK Adenylate kinase ( 91.5 0.12 2.5E-06 48.2 2.2 23 211-233 1-23 (194)
452 PRK05563 DNA polymerase III su 91.5 0.33 7.2E-06 54.0 6.1 23 210-232 39-61 (559)
453 TIGR01243 CDC48 AAA family ATP 91.5 0.3 6.5E-06 55.9 5.9 26 212-237 490-515 (733)
454 PRK15064 ABC transporter ATP-b 91.4 0.11 2.4E-06 56.9 2.3 32 202-233 338-369 (530)
455 cd01853 Toc34_like Toc34-like 91.4 0.28 6E-06 49.1 4.9 24 210-233 32-55 (249)
456 PRK09700 D-allose transporter 91.4 0.11 2.4E-06 56.6 2.1 32 202-233 282-313 (510)
457 KOG0651 26S proteasome regulat 91.3 0.23 5E-06 51.5 4.3 45 212-256 169-220 (388)
458 COG1131 CcmA ABC-type multidru 91.3 0.12 2.6E-06 52.8 2.2 39 198-236 19-58 (293)
459 PHA00729 NTP-binding motif con 91.3 0.065 1.4E-06 53.1 0.2 35 198-233 7-41 (226)
460 PRK08727 hypothetical protein; 91.3 1 2.2E-05 44.2 8.7 44 211-254 43-88 (233)
461 PRK10070 glycine betaine trans 91.3 0.11 2.4E-06 55.5 1.9 33 202-234 47-79 (400)
462 PRK00131 aroK shikimate kinase 91.2 0.15 3.2E-06 46.3 2.5 28 208-235 3-30 (175)
463 KOG0057 Mitochondrial Fe/S clu 91.2 0.11 2.4E-06 57.2 1.9 30 204-233 373-402 (591)
464 TIGR02640 gas_vesic_GvpN gas v 91.2 0.16 3.6E-06 50.7 3.0 33 206-238 18-50 (262)
465 COG4586 ABC-type uncharacteriz 91.2 0.1 2.2E-06 53.2 1.6 35 198-232 39-73 (325)
466 PRK10790 putative multidrug tr 91.1 0.12 2.6E-06 57.1 2.2 34 201-234 359-392 (592)
467 PRK11147 ABC transporter ATPas 91.1 0.12 2.6E-06 58.1 2.2 31 203-233 339-369 (635)
468 TIGR01193 bacteriocin_ABC ABC- 91.1 0.12 2.6E-06 58.5 2.3 33 201-233 492-524 (708)
469 PRK09700 D-allose transporter 91.1 0.12 2.5E-06 56.4 2.0 33 201-233 23-55 (510)
470 COG0488 Uup ATPase components 91.1 0.12 2.7E-06 57.0 2.2 33 201-233 340-372 (530)
471 TIGR02857 CydD thiol reductant 91.1 0.13 2.7E-06 56.1 2.3 34 202-235 341-374 (529)
472 TIGR01241 FtsH_fam ATP-depende 91.0 0.28 6.1E-06 53.5 4.9 25 212-236 91-115 (495)
473 COG1122 CbiO ABC-type cobalt t 91.0 0.11 2.4E-06 51.6 1.6 32 201-232 22-53 (235)
474 PRK13409 putative ATPase RIL; 91.0 0.14 3.1E-06 57.1 2.7 36 199-234 89-124 (590)
475 PRK10522 multidrug transporter 91.0 0.13 2.8E-06 56.5 2.3 32 202-233 342-373 (547)
476 KOG0062 ATPase component of AB 91.0 0.12 2.6E-06 56.6 1.9 32 201-232 98-129 (582)
477 TIGR02633 xylG D-xylose ABC tr 91.0 0.11 2.4E-06 56.4 1.7 32 202-233 20-51 (500)
478 PRK05748 replicative DNA helic 91.0 0.22 4.8E-06 53.6 4.0 62 191-252 184-249 (448)
479 cd03270 ABC_UvrA_I The excisio 90.9 0.1 2.2E-06 50.9 1.2 25 203-227 15-39 (226)
480 PF01583 APS_kinase: Adenylyls 90.9 0.32 7E-06 45.5 4.5 85 208-320 1-86 (156)
481 PRK11174 cysteine/glutathione 90.9 0.11 2.4E-06 57.3 1.7 32 202-233 369-400 (588)
482 TIGR03719 ABC_ABC_ChvD ATP-bin 90.9 0.14 2.9E-06 56.5 2.3 33 201-233 23-55 (552)
483 PRK15134 microcin C ABC transp 90.9 0.11 2.5E-06 56.8 1.7 32 202-233 28-59 (529)
484 COG1125 OpuBA ABC-type proline 90.9 0.12 2.6E-06 52.4 1.7 39 196-234 13-52 (309)
485 PRK06647 DNA polymerase III su 90.9 0.53 1.1E-05 52.5 6.9 23 211-233 40-62 (563)
486 PRK10261 glutathione transport 90.9 0.13 2.8E-06 57.7 2.1 33 201-233 34-66 (623)
487 TIGR03796 NHPM_micro_ABC1 NHPM 90.8 0.13 2.9E-06 58.1 2.3 32 202-233 498-529 (710)
488 PRK03839 putative kinase; Prov 90.8 0.14 3.1E-06 47.6 2.1 23 211-233 2-24 (180)
489 PRK13549 xylose transporter AT 90.8 0.11 2.4E-06 56.5 1.6 32 202-233 24-55 (506)
490 TIGR03600 phage_DnaB phage rep 90.8 0.19 4.1E-06 53.5 3.2 60 193-252 177-240 (421)
491 PRK11160 cysteine/glutathione 90.8 0.14 3.1E-06 56.7 2.3 34 202-235 359-392 (574)
492 TIGR03797 NHPM_micro_ABC2 NHPM 90.7 0.14 3E-06 57.9 2.2 33 201-233 471-503 (686)
493 CHL00176 ftsH cell division pr 90.7 0.3 6.6E-06 55.2 4.9 24 212-235 219-242 (638)
494 COG1223 Predicted ATPase (AAA+ 90.7 0.2 4.3E-06 51.0 3.1 46 211-256 153-201 (368)
495 cd03287 ABC_MSH3_euk MutS3 hom 90.7 0.74 1.6E-05 45.3 7.0 35 197-231 19-53 (222)
496 PRK10789 putative multidrug tr 90.6 0.15 3.1E-06 56.5 2.3 33 202-234 334-366 (569)
497 TIGR02633 xylG D-xylose ABC tr 90.6 0.12 2.7E-06 55.9 1.7 36 198-233 274-310 (500)
498 PRK10762 D-ribose transporter 90.6 0.14 3.1E-06 55.6 2.2 33 202-234 271-303 (501)
499 PF13086 AAA_11: AAA domain; P 90.6 0.19 4.2E-06 47.1 2.8 47 212-259 20-75 (236)
500 PTZ00088 adenylate kinase 1; P 90.6 0.18 3.9E-06 49.8 2.7 36 207-245 4-39 (229)
No 1
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=3.1e-135 Score=1082.91 Aligned_cols=465 Identities=82% Similarity=1.302 Sum_probs=452.2
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
++++|||+|+|+++++.||||+++++.+.+|+||+|+||++|++|+.||++++|+||||||||||||+|||||++++..+
T Consensus 19 ~~~~~gE~v~v~~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG~V~DgigrPLd~~~~~~~ 98 (591)
T TIGR01042 19 AGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGNIFDGIQRPLKAIAEQSQ 98 (591)
T ss_pred CCCCcCCEEEECCCceEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhhcccCcCCCchHHHHhhcc
Confidence 58999999999877799999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
..|++||+++++||+++.|+|.|..+|+||.|++|+++|+|+||++++|+||+||+..|+|++|+++|+||++|+|++++
T Consensus 99 ~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~~~g~ytv~~~i~~~~ 178 (591)
T TIGR01042 99 SIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAPAGNYTVDDTVLEVE 178 (591)
T ss_pred CccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEe
Confidence 88999999999999999999999779999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV 241 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~ 241 (480)
.+|..++++|.|+||||+|+|+++|.++++||.||+|+||+|+|||||||++|||++|+|||+|++||+||+++|++||+
T Consensus 179 ~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l~~~lak~s~aDviVyv 258 (591)
T TIGR01042 179 FQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIVYV 258 (591)
T ss_pred eCCceeeeccceeeecccCCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHHHHHHHHHhccCcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHH
Q 011655 242 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 321 (480)
Q Consensus 242 ~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~ 321 (480)
+||||+|||+||+++||++.++. ++++++.|+|||+|+||||+|+.+|++++|+|+|+||||||||+|||+++||+|||
T Consensus 259 g~GERG~Em~evle~fp~l~dp~-~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~ 337 (591)
T TIGR01042 259 GCGERGNEMAEVLMDFPELTMEV-DGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRW 337 (591)
T ss_pred EEeechHHHHHHHHHhHhhcccc-cccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 99999999999999999999888 66667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEE
Q 011655 322 AEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWG 401 (480)
Q Consensus 322 a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~ 401 (480)
|+|+||||+++||||+++|||+||||+|++||||||+++++|+++++||||+|++|++|+||++|||+++|++|+|+||+
T Consensus 338 AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~ 417 (591)
T TIGR01042 338 AEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWG 417 (591)
T ss_pred HHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceee
Confidence 99999999999999999999999999999999999999988876668999999999999999999999999999999999
Q ss_pred ecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 402 LDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 402 Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
|||+||++||||||||+.|+||+|+.+.+||...+++|++++.++|++|++|+|+++||+ +|.+++
T Consensus 418 Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l~g~~~l 484 (591)
T TIGR01042 418 LDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVGKDAL 484 (591)
T ss_pred eCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999987799999999999999999999999999 666654
No 2
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2e-133 Score=1072.94 Aligned_cols=460 Identities=59% Similarity=1.048 Sum_probs=446.6
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
++++|||+|+|+++++.||||++++|.+.+|+||+|+||++|++|++||++++|+||||||||||||+|||||++.+..+
T Consensus 18 ~~~~~gE~v~v~~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGrV~DgigrPLd~~~~~~g 97 (578)
T TIGR01043 18 KGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLDVLKEKTG 97 (578)
T ss_pred CCCCcCCEEEECCCcEEEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcceeccCCccccCcccccc
Confidence 46999999999877799999999999999999999999999999999999999999999999999999999999877665
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+ |++||+++++|+.++.|+|.|. +|+||.|.+|+++|+|+|++.++|+||+||+..|+|++|+++|+||++|+|++++
T Consensus 98 ~-~i~rg~~~~~l~~~~~w~f~p~-~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~~g~~~~~~~v~~~~ 175 (578)
T TIGR01043 98 D-FIARGVDAPGLDRDKKWHFKPT-VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIAEEGDYTVEDTIAVVD 175 (578)
T ss_pred c-ccccCccCCCcCcccccccccc-cccCccccCCceEEEEecccceeeeeecCCCCcceEEEeccCCCceeeeeEEEEe
Confidence 4 9999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV 241 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~ 241 (480)
.+|. ++++|.|+||||+|+|+++|.++++||.||||+||+|+|||||||++|||++|+|||+|++|||+|+++|++||+
T Consensus 176 ~~g~-~~~~~~~~wPvr~p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l~~~lak~~~adivVyv 254 (578)
T TIGR01043 176 TDGD-EEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQLAKWSDADIVVYI 254 (578)
T ss_pred cCCc-eeeeeeeecccccCCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 9888 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHH
Q 011655 242 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 321 (480)
Q Consensus 242 ~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~ 321 (480)
+||||++||+||+++||+++++. .+.+.|+|||+|+||||+|+++|++++|+|+|+||||||||+||++|+||+|||
T Consensus 255 g~GERG~E~~e~le~f~~l~dp~---~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS~sR~ 331 (578)
T TIGR01043 255 GCGERGNEMTDVLEEFPELKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 331 (578)
T ss_pred EeccChHHHHHHHHHhHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChhHH
Confidence 99999999999999999999876 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEE
Q 011655 322 AEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWG 401 (480)
Q Consensus 322 a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~ 401 (480)
|+|+||||+++||||+++|||+||||+|++||||||++++++++++.||||+|++|++|+||++|||+++|++|+|+||+
T Consensus 332 AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~sdPVt~~t~~i~dg~i~ 411 (578)
T TIGR01043 332 AEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWA 411 (578)
T ss_pred HHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCCCccHHHHHHHHhCcEEE
Confidence 99999999999999999999999999999999999999988875568999999999999999999999999999999999
Q ss_pred ecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 402 LDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 402 Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
|||+||++||||||||+.|+||+++.+++||.. ++++|.+++.+++++|++|+|+++|++ +|.|++
T Consensus 412 Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~lvG~d~L 479 (578)
T TIGR01043 412 LDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVGPDAL 479 (578)
T ss_pred eCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999976 599999999999999999999999999 599987
No 3
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=2.4e-132 Score=1065.85 Aligned_cols=460 Identities=60% Similarity=1.019 Sum_probs=446.7
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
++++|||+|+|+++++.||||+++++.+.+||||+|+||++|++|++||++++|+||||||||||||+|||||++++..
T Consensus 21 ~~~~~~E~v~v~~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLGrv~Dg~grPLd~~~~~~- 99 (586)
T PRK04192 21 GGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSIFDGIQRPLDELAEKS- 99 (586)
T ss_pred CCCCccCEEEECCCcEEEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcCCeecCCCCcccccchhc-
Confidence 4689999999987789999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+.|++||+++++||++++|+|.|. +|+||.|.+||++|+|+|++.++|+||+||+..|++++|+++|+||++|+|++++
T Consensus 100 ~~~i~rG~~~~~l~~~~~w~f~p~-~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~~~G~ytv~~~i~~~~ 178 (586)
T PRK04192 100 GDFLERGVYVPALDREKKWEFTPT-VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIVSEGDYTVDDTIAVLE 178 (586)
T ss_pred ccccccCCCCCCCCcccccceecc-cccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEE
Confidence 459999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred -ECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 -FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 -~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
.+|..++++|.|+||||+++|..+|.++++||.||||+||+|+||+||||++|||++|+|||+|+++||+|+++|++||
T Consensus 179 ~~~G~~~~~~~~~~wPvr~~~p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~adivVy 258 (586)
T PRK04192 179 DEDGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADADIVIY 258 (586)
T ss_pred ccCCceeeeccccccccccCCcccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
++||||++|++||+++||++.++. .+++.|+|||+|+||||||+++|++++|+|+|+||||||||+|||+|+||+||
T Consensus 259 vg~GERg~E~~e~l~ef~~l~dp~---~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR 335 (586)
T PRK04192 259 VGCGERGNEMTEVLEEFPELIDPK---TGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSR 335 (586)
T ss_pred EEcCcChHHHHHHHHHHHhhcccc---cccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHH
Confidence 999999999999999999998876 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||+++||+|+++|||+||||+|++||||||+++++++ .+||||+|++|++|+||++|||+++|++|+|+||
T Consensus 336 ~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~--~~GSIT~i~aVs~pggD~sePVt~~t~~i~dg~i 413 (586)
T PRK04192 336 WAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGG--EEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFW 413 (586)
T ss_pred HHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCC--CCcceEEEEEEECCCCCCCcchHHHHHHHhCceE
Confidence 99999999999999999999999999999999999999998876 4799999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
+|||+||++||||||||+.|+||+++.+.+||.+ ++++|.+++.+++++|++|+++++|++ +|.|++-
T Consensus 414 ~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~lvG~d~Ls 483 (586)
T PRK04192 414 ALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVRLVGPDALP 483 (586)
T ss_pred EEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 9999999999999999999999999999999976 589999999999999999999999999 8999764
No 4
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=7.4e-118 Score=1007.53 Aligned_cols=459 Identities=57% Similarity=1.005 Sum_probs=440.5
Q ss_pred CCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCCc
Q 011655 3 GAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGD 82 (480)
Q Consensus 3 ~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~~ 82 (480)
+++|||+|+|++..+.||||+++++.+.+||||+|+||++|++|++||++++|++||+||||||||+||||+.+.+.+++
T Consensus 22 ~~~iGE~v~I~~~~l~gEVIg~~~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~~LLGRV~DGlGrPL~~~~~~~~~ 101 (1017)
T PRK14698 22 GAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLTSIYDGIQRPLEVIREKSGD 101 (1017)
T ss_pred CCCCCCEEEECCCcEEEEEEEEeCCEEEEEECCCCCCCCCCCEEEEcCCcceeecCHHHhhcccCCCCChHHHHHHHhcc
Confidence 78999999998666999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred cccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEEE
Q 011655 83 VYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF 162 (480)
Q Consensus 83 ~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~~ 162 (480)
|++||++.|+||++++|+|.|. +++||+|.+||++|+|+||++++|+||+||..+|+|+||+++|+|||+|+|++++.
T Consensus 102 -~i~~g~~~~~l~~~~~w~f~p~-~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~~~g~~~~~~~~~~~~~ 179 (1017)
T PRK14698 102 -FIARGISAPALPRDKKWHFIPK-VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIADEGEYTIEEVIAKVKT 179 (1017)
T ss_pred -cccCCCCCCCCCCCCeeeeEee-eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEcCCCCcceeeEEEEEEc
Confidence 9999999999999999999996 99999999999999999999999999999999999999999999999999999995
Q ss_pred -CCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchH-----------------
Q 011655 163 -QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV----------------- 224 (480)
Q Consensus 163 -~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~----------------- 224 (480)
+|..++++|+|+||||.|+|+.+|++++.||.||+|+||+|+|++||++.+|+|++|+||++
T Consensus 180 ~~g~~~~~~~~~~wpvr~~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G~GKCV~~dt~V~l~~g~~i~i~ 259 (1017)
T PRK14698 180 PSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIK 259 (1017)
T ss_pred CCCCEEEeeeEecCCCCCCCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCCcCcccCCcceEeecCCceeEec
Confidence 89999999999999999999999999999999999999999999999999999999999921
Q ss_pred --------------------------------------------------------------------------------
Q 011655 225 -------------------------------------------------------------------------------- 224 (480)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (480)
T Consensus 260 elve~~~g~~~~~~~g~e~~~~i~~~~~v~~~~dgklv~~~~~~v~k~~~~~v~rikt~~Gr~I~vT~~Hpflt~~v~~~ 339 (1017)
T PRK14698 260 DLYEILDGKGKKTVEGNEEWTELEEPITLYGYKDGKIVEIKATHVYKGASAGMIEIKTRTGRKIKVTPIHKLFTGRVTKD 339 (1017)
T ss_pred cceEeccCCcceeeeccceeeecccccceeeeccceEEEEeeeEEeecCCceeEEEEecCCcEEEEeecceeeeeccccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011655 225 -------------------------------------------------------------------------------- 224 (480)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (480)
T Consensus 340 G~~~~~~ka~eLk~GD~IavpR~vp~~~~v~~~~~~~~~~~~~l~lp~~~deeLA~lLGyliGDG~~~~~~v~i~n~dee 419 (1017)
T PRK14698 340 GLEIEEVMAKDIKKGDRIAVAKKIDGGERVKLNIRVDQKRGKKIKIPDVLDEELAEFLGYLIADGTLKPRTVAIYNNDES 419 (1017)
T ss_pred CcchhhhhhhhcCcCceEeecccccccccccccccchhcccccccCCcccCHHHHHHHHHHhhCCcccccceeeccccHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011655 225 -------------------------------------------------------------------------------- 224 (480)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (480)
T Consensus 420 ll~~i~~la~~~FG~~~~i~~~~~~~~l~i~sk~l~~~L~~LGl~g~k~a~~KrIPe~Vf~~~~e~i~aFLrGlfdaDG~ 499 (1017)
T PRK14698 420 LLKRANELAMELFGIEGKIVKERTVKALLIHSKALVDFFKKLGIPGNKKARTWKVPKELLISEPEVVKAFIKAYIACDGY 499 (1017)
T ss_pred HHHHHHHHHHHhcCCcceeecccccceeeechHHHHHHHHHhCCccccccccccCCHHHHhCCHHHHHHHHHHeeccCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011655 225 -------------------------------------------------------------------------------- 224 (480)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (480)
T Consensus 500 v~~~~~~I~~sT~S~~Lae~L~~LLlrlGI~s~i~~k~~~~~~~Y~L~IsG~~nL~~lg~~~~~~~~~n~D~iP~~v~~~ 579 (1017)
T PRK14698 500 YDEEKGEIEIVTASEEAAYGFSYLLAKLGIYAIIREKIIGDKEYYRVVISGEANLEKLGIEREARGYTSIDIVPVDVEEI 579 (1017)
T ss_pred cccccceEEEEeccHHHHHHHHHHHHHCCceEEEeeecccCCceEEEEEechhhHHHhhhccccccCCcccccchhHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011655 225 -------------------------------------------------------------------------------- 224 (480)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (480)
T Consensus 580 ~~a~~r~~~~l~~~g~~~~~~~~~~~~sr~~~~~~~~~~~~~~l~~~~~~di~wD~vv~Ie~~g~~~~VyDlTV~~hNFl 659 (1017)
T PRK14698 580 YEALGRPYAELKKAGIEIHNYLSGENMSYEMFRKFAKFVGLEEIAENHLQHILFDEIVEINYISEGQEVYDITTETHNFI 659 (1017)
T ss_pred HHhhccchhhhhhcccccccccccccccHHHHHhHHhhhchHHHHhhhcccccceeeEEeeccCccceEEeeeccchhhh
Confidence
Q ss_pred ------------HHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHH
Q 011655 225 ------------ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 292 (480)
Q Consensus 225 ------------L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~ 292 (480)
.++|||+++++|++||++||||++||+||+++||++.++. .+.+.|+|||+|+||||+|+++|++
T Consensus 660 a~~~~~~~hns~~q~~la~~~~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~---~g~~~m~rtvlv~~ts~~p~~~R~~ 736 (1017)
T PRK14698 660 GGNMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPK---TGKPLMERTVLIANTSNMPVAAREA 736 (1017)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCCEEEEEeeccchHHHHHHHHHHHhhcccc---cCccccccEEEEEECCCCCHHHHHH
Confidence 1224677788999999999999999999999999999988 7789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCcccee
Q 011655 293 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVT 372 (480)
Q Consensus 293 a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT 372 (480)
++|+|+|+||||||||+|||+|+||+||||+|+||||+++||||+++|||+|||++|++||||||+++++++.+++||||
T Consensus 737 s~y~a~tiAEyfrd~G~~Vll~~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT 816 (1017)
T PRK14698 737 SIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVS 816 (1017)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887766789999
Q ss_pred EEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHH
Q 011655 373 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQ 451 (480)
Q Consensus 373 ~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~ 451 (480)
+|++|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.+.+||.. .+++|.+++.+++++|+
T Consensus 817 ~i~~V~~~g~D~s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 896 (1017)
T PRK14698 817 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQ 896 (1017)
T ss_pred EEEEEECCCCCCCCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 69999999999999999
Q ss_pred hhhhHHHHHHc-CCcc
Q 011655 452 REDDLNEIVQV-GYLW 466 (480)
Q Consensus 452 ~y~e~~~li~~-G~d~ 466 (480)
+|+|+++++++ |.++
T Consensus 897 ~~~el~~~i~l~g~~~ 912 (1017)
T PRK14698 897 KEAELQEIVRIVGPDA 912 (1017)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 99999999996 5443
No 5
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=1.7e-118 Score=932.12 Aligned_cols=463 Identities=58% Similarity=0.992 Sum_probs=449.0
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
+.+++|+|+|+||+.+|.||||++++|++.|||||+|+||++|++|.+||+||||+||||||+.||||+||||+.+.+.+
T Consensus 18 m~~~~my~~v~Vg~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~IyDGiQrPL~~i~e~s 97 (588)
T COG1155 18 MEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKSIYDGIQRPLDVIKETS 97 (588)
T ss_pred CcCCceEEEEEEcCCceeEEEEEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhhhhhhccChHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCC-CCcEEEecCCCCccccceEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA-MGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~-~g~v~~~~~~g~~~~~~~v~~ 159 (480)
| .|+.||+++|+||++++|+|+|. +|+||.|.+||++|+|+|++.+ |++|+||+. +|++++++++|+||++|+|++
T Consensus 98 g-~Fi~RGv~~p~Ldr~~kW~F~P~-~~~Gd~V~~GdvlGtV~Et~~i-~~imvpp~~~~~~v~~i~~~G~ytv~d~ia~ 174 (588)
T COG1155 98 G-DFIARGLNPPALDRKKKWDFVPA-VKKGDTVYPGDVLGTVQETSLI-THRIMVPPGVSGKVTWIAEEGEYTVEDVIAT 174 (588)
T ss_pred h-hHhhcCCCCCCCCcccccccccc-cccCCEeccCceEEEeccCCce-EEEEeCCCCCceEEEEEecCCCceeeEEEEE
Confidence 8 79999999999999999999997 5999999999999999999999 778888885 579999999999999999999
Q ss_pred EEECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEE
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVV 239 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V 239 (480)
++.++..++++|.|+||||+|+|+.+|+++++||.||+|+||+|+|+.||+..+|+||+|+|||++.+++|+++++|++|
T Consensus 175 v~~~~g~~~~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~laK~sdadiVV 254 (588)
T COG1155 175 VSTEGGEVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLADGDIVI 254 (588)
T ss_pred EecCCCeEEEEEEEeccccCCccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcEehhhhhhhhccCCEEE
Confidence 99665599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccch
Q 011655 240 YVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTS 319 (480)
Q Consensus 240 ~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dslt 319 (480)
|++||||++|++|++.+||||+++- .+...|+||++++||||||.++|+.++|+|.|+||||||||+||+++.||++
T Consensus 255 yigCGERGNEmtevL~eFPeL~Dp~---tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTS 331 (588)
T COG1155 255 YVGCGERGNEMTEVLQEFPELKDPN---TGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTS 331 (588)
T ss_pred EEecCCccchHHHHHHhCccccCCC---CCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHH
Confidence 9999999999999999999999977 7788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEE
Q 011655 320 RWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVF 399 (480)
Q Consensus 320 r~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~ 399 (480)
|||+|+||||.+++|+|+.+|||+||-++|+++|||||++.++|++++.||+|++++|+++++|+++||+.+|..+...|
T Consensus 332 RWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vF 411 (588)
T COG1155 332 RWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVF 411 (588)
T ss_pred HHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeee
Confidence 99999999999999999999999999999999999999999998878889999999999999999999999999999999
Q ss_pred EEecHHhhhcCCCCCCccccccccchhhhhhhhc-cCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccccc
Q 011655 400 WGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSLS 469 (480)
Q Consensus 400 i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~-~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~~ 469 (480)
|.||++||+++|||||||+.|+|.+.+.+++||. .++++|.++..+++++|++..+++++++ +|.|++-+
T Consensus 412 w~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e 483 (588)
T COG1155 412 WALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPE 483 (588)
T ss_pred cccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccch
Confidence 9999999999999999999999999999999997 5799999999999999999999999999 99999754
No 6
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=2.4e-118 Score=903.62 Aligned_cols=467 Identities=78% Similarity=1.254 Sum_probs=458.9
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
|.+++|+|+|+||..+|.||||++++|.++|||||+|+|+.+||+|..||+||+|+||||++|.||||+||||..+.+.+
T Consensus 37 M~G~aMYELVrVGh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s 116 (618)
T KOG1352|consen 37 MAGCAMYELVRVGHDELVGEIIRLEGDMATIQVYEETSGLTVGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDISELS 116 (618)
T ss_pred ccchHHHHHHHcchHhhhhheeEecCceeEEEEEeccCCcccCCchhhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
++.|+|+|++.|+|+++..|+|+|..+++|++|.+||++|.|+||++++|+++.||...|+|+||||.|+|+++|.|.|+
T Consensus 117 ~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~ 196 (618)
T KOG1352|consen 117 QSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRARGTVTYIAPAGNYTLDDVVLEL 196 (618)
T ss_pred CcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccCceEEEEecCCccccccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
|.+|.+.+++|+|.||||.|+|+.++++-+.||.||+|++|+|+||+.|+...|+|.+|||||++.+.++++++.|++||
T Consensus 197 Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGCGKTVISQsLSKYSNSD~iiY 276 (618)
T KOG1352|consen 197 EFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIIY 276 (618)
T ss_pred eecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcchhcCCccccCcccccchHHHHHHHhhccCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
++||||++|+.|++.+||+|..++ ++..+..|+||++|+||+|||.++|.+++|+++|+||||||||+||-.|.||++|
T Consensus 277 VGCGERGNEMsEVL~dFPeLt~ev-~G~~esiMKRT~LVANTSNMPVAAREASIYTGITlsEYfRDmG~nVsMmADStSR 355 (618)
T KOG1352|consen 277 VGCGERGNEMSEVLMDFPELTMEV-DGKTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSR 355 (618)
T ss_pred EcccccchhHHHHHHhChhhEEec-CCcchhhhhhhhhhhcCCCCchhhhhhhhhhcccHHHHHHhcCcceeeeecchhH
Confidence 999999999999999999998877 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||.+++|+|+..|||+||-++|++||||||+++|+|++++.||+|++++|++|+||++|||+.+|.+|++.||
T Consensus 356 WAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQVFW 435 (618)
T KOG1352|consen 356 WAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFW 435 (618)
T ss_pred HHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEEEeecCCCCCcCCcchhhhhheeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
.||++||++.|||.|||+.|+|.+|..|++||++..|++..+..++|++|++.+++.++++ +|..++-
T Consensus 436 GLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq~eedl~eivQLVGK~aL~ 504 (618)
T KOG1352|consen 436 GLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQLVGKSALA 504 (618)
T ss_pred cccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHHHHHHhhhhhHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 8887653
No 7
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=6.5e-116 Score=892.11 Aligned_cols=369 Identities=73% Similarity=1.239 Sum_probs=360.4
Q ss_pred ccEEecCccccccccccccCccccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeecccccccc
Q 011655 52 PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHH 131 (480)
Q Consensus 52 ~lsV~lG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~ 131 (480)
||||+|||||||+||||+||||+.+.+..++.|++||+++++||++++|+|+|. +|+||.|.+||++|+|+||++++|+
T Consensus 1 ~lsveLgPGll~~i~DGiqrpL~~i~~~~~~~fi~rg~~~~~ld~~~~w~f~p~-~k~gd~v~~gd~~g~v~e~~~~~h~ 79 (369)
T cd01134 1 PLSVELGPGLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKPL-VKVGDHVTGGDILGTVPENSLIEHK 79 (369)
T ss_pred CcceEeccchhccccCcccCCHHHHHHhhcCCcccCCCCCCCCCCCCeeeeEec-cccCCCccCCCEEEEEecCCceeeE
Confidence 689999999999999999999999987676789999999999999999999996 8999999999999999999999999
Q ss_pred ccCCCCCCCcEEEecCCCCccccceEEEEEECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccc
Q 011655 132 VALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGT 211 (480)
Q Consensus 132 i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr 211 (480)
||+||+..|+|++++++|+||++|+|++++.+|..++++|.|+|||++++|..+|..+++||.||||+||+|+||+||||
T Consensus 80 imvp~~~~g~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~~~r~~~~~pL~TGirvID~l~Pi~kGqr 159 (369)
T cd01134 80 IMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNEPLLTGQRVLDTLFPVVKGGT 159 (369)
T ss_pred EeCCCCCCeEEEEEecCCCeeEEEEEEEEEeCCeEeccccceeeecccCCCccccCCCCCchhccchhhhccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 291 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~ 291 (480)
++|||++|+|||+|+++|++|+++|++||++||||++|++||+++||+++++. .+++.|+|||+|+||||+|+.+|+
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~---~~~~~m~rtvlV~nts~~p~~~R~ 236 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPV---TGEPLMKRTVLIANTSNMPVAARE 236 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHHHhhcccc---ccCCccceEEEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999877 778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccce
Q 011655 292 ASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSV 371 (480)
Q Consensus 292 ~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSI 371 (480)
+++|+|+|+||||||||+|||+++||+||||+|+||||+++||+|+++|||+|+|++|++||||||+++++|+++++|||
T Consensus 237 ~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSI 316 (369)
T cd01134 237 ASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSV 316 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776678999
Q ss_pred eEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccc
Q 011655 372 TIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 424 (480)
Q Consensus 372 T~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~ 424 (480)
|+|++|++|+||++|||++++++|+|+||+|||+||++||||||||+.|+||+
T Consensus 317 T~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 317 TIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhCCCCCCcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999995
No 8
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-105 Score=823.38 Aligned_cols=350 Identities=29% Similarity=0.468 Sum_probs=326.4
Q ss_pred CCCccCCEEEecCC----cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVGHD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~~~----~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
|.+.+||+|+|... ...|||++|+++.+++++|++..|+.+|++|.++|++++|++|++|||||+|++|||||+.+
T Consensus 41 ~~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~ 120 (441)
T COG1157 41 PQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGG 120 (441)
T ss_pred CCCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCCCEEEecCCccccccChhhhhhhhccCCCcCcCCC
Confidence 68999999999542 23999999999999999999999999999999999999999999999999999999999843
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
. ++.. .| .
T Consensus 121 ~---------------~~~~-~~--~------------------------------------------------------ 128 (441)
T COG1157 121 L---------------PDGT-ER--R------------------------------------------------------ 128 (441)
T ss_pred C---------------CCCc-cc--c------------------------------------------------------
Confidence 1 1110 11 1
Q ss_pred EEEEECCeEEEEeecccccccCC-CCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~-~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|+..+ ++++.|.++++||.||||+||+|+|||+|||+|||+++|+|||||+.||++++.+|
T Consensus 129 ------------------~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~aD 190 (441)
T COG1157 129 ------------------PLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (441)
T ss_pred ------------------cccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHHHHHHHhccccCC
Confidence 22222 23799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecc
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 316 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~D 316 (480)
++|+++||||+|||+||+++. .+++.++|||+|++|||+||.+|..++++|++|||||||||+|||+|||
T Consensus 191 v~ViaLIGERGREVrEFIE~~----------Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mD 260 (441)
T COG1157 191 VNVIALIGERGREVREFIEKD----------LGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMD 260 (441)
T ss_pred EEEEEEeeccchhHHHHHHHh----------cchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 999999999999999999861 5677799999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
|+||||+|+|||+++.||||+++||||++|+.|++|+||||+. .+||||+||||++++||++|||+|++++||
T Consensus 261 SlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~-------~~GsITafYTVLveGDD~~dPiaD~~RsIL 333 (441)
T COG1157 261 SLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG-------DKGSITAFYTVLVEGDDMNDPIADEVRSIL 333 (441)
T ss_pred cHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC-------CCCcEEEEEEEEeecCCCCCchhhhhhhhc
Confidence 9999999999999999999999999999999999999999994 579999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||+|||+||++|||||||+++|+||+|+++ ++++|++++.++|++|+.|+|++|||++|+
T Consensus 334 DGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i------~~~~h~~~a~~~r~lls~y~e~edLi~iGa 395 (441)
T COG1157 334 DGHIVLSRALAEAGHYPAIDVLASISRVMPQI------VSEEHRKAARRLRQLLSRYEENEDLIRIGA 395 (441)
T ss_pred cceEEeeHhHHhcCCCCCcchHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 999999999999999999999999999876
No 9
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=2.8e-100 Score=804.49 Aligned_cols=348 Identities=30% Similarity=0.480 Sum_probs=326.0
Q ss_pred CccCCEEEe--c-CCcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccccc
Q 011655 4 AAMYELVRV--G-HDNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 79 (480)
Q Consensus 4 a~igE~v~v--~-~~~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~ 79 (480)
+.+||+|+| . ++.+.|||++ ++++.+.+++|++++||++|++|++||++++||+|++|||||||++|||||+.+
T Consensus 24 ~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~lLGRViD~~G~pld~~~-- 101 (463)
T PRK09280 24 PKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKG-- 101 (463)
T ss_pred ccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeeeccccCCCC--
Confidence 399999999 2 4569999999 999999999999999999999999999999999999999999999999999742
Q ss_pred CCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEE
Q 011655 80 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 80 ~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~ 159 (480)
++.
T Consensus 102 -------------~~~---------------------------------------------------------------- 104 (463)
T PRK09280 102 -------------PIG---------------------------------------------------------------- 104 (463)
T ss_pred -------------CcC----------------------------------------------------------------
Confidence 110
Q ss_pred EEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC--
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD-- 236 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d-- 236 (480)
..++||++.++| +++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.||+++..+|
T Consensus 105 -----------~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~ 173 (463)
T PRK09280 105 -----------AEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHG 173 (463)
T ss_pred -----------ccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHHHHHHHHHHhcCC
Confidence 124688887777 899999999999999999999999999999999999999999999998886555
Q ss_pred -EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCCceeee
Q 011655 237 -TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMM 314 (480)
Q Consensus 237 -v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G~dVlll 314 (480)
++||++||||++||+||++++ .+.+.++|||+|++|+|+||.+|++++|+|+|+|||||| ||+||||+
T Consensus 174 ~v~V~~liGER~rEv~efi~~~----------~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll 243 (463)
T PRK09280 174 GYSVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLF 243 (463)
T ss_pred CEEEEEEeccCcHHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999999999999999984 456889999999999999999999999999999999999 99999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhc
Q 011655 315 ADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLS 394 (480)
Q Consensus 315 ~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~ 394 (480)
+||+||||+|+||||+++||||+++|||||+|+.|++||||||+. ++||||+||||++|+||++|||+|++++
T Consensus 244 ~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-------~~GSITai~tVl~~gdD~~dPI~d~~~s 316 (463)
T PRK09280 244 IDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST-------KKGSITSVQAVYVPADDLTDPAPATTFA 316 (463)
T ss_pred ecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC-------CCCceeEEEEEECcCCCCCCcchHhhhh
Confidence 999999999999999999999999999999999999999999983 5799999999999999999999999999
Q ss_pred eecEEEEecHHhhhcCCCCCCccccccccch-hhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 395 IVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 395 i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||||+|||+||++||||||||+.|+||+| +.+ ++++|++++.++|++|++|+++++|+++|.
T Consensus 317 ilDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~------~~~~~~~~a~~~r~~la~y~e~e~li~i~g 381 (463)
T PRK09280 317 HLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLI------VGEEHYDVAREVQQILQRYKELQDIIAILG 381 (463)
T ss_pred hcceEEEEcHHHHhCCCCCccCCcccccccccccc------CCHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999 555 789999999999999999999999999654
No 10
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=7.8e-100 Score=802.93 Aligned_cols=360 Identities=24% Similarity=0.341 Sum_probs=328.2
Q ss_pred CCCccCCEEEec--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCe-EEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~--~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~-V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+++++||+|+|. ++ .+.|||++++++.+.+|+|++|.||++|+. |.+||++++||+|++|||||||++|||||+.+
T Consensus 19 ~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lLGRViD~~G~plD~~~ 98 (458)
T TIGR01041 19 EPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGP 98 (458)
T ss_pred CCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhccCEEccCCcccCCCC
Confidence 478999999994 23 378999999999999999999999999987 99999999999999999999999999999842
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
. +..
T Consensus 99 ~---------------~~~------------------------------------------------------------- 102 (458)
T TIGR01041 99 E---------------IVP------------------------------------------------------------- 102 (458)
T ss_pred C---------------CCc-------------------------------------------------------------
Confidence 1 100
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.||++|+++|
T Consensus 103 --------------~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ad 168 (458)
T TIGR01041 103 --------------DERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVR 168 (458)
T ss_pred --------------cceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHHHHHHhhccc
Confidence 02355654444 789999999999999999999999999999999999999999999999999888
Q ss_pred ------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH-HCCC
Q 011655 237 ------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGY 309 (480)
Q Consensus 237 ------v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr-d~G~ 309 (480)
++||++||||++||+||++++ .+.+.|+|||+|++|+|+||.+|++++|+|+|+||||| |+|+
T Consensus 169 ~~~~~~v~V~~~iGERgrEv~efi~~~----------~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~ 238 (458)
T TIGR01041 169 GEESEFAVVFAAMGITYEEANFFMKDF----------EETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDM 238 (458)
T ss_pred CCCCceEEEEEEccccchHHHHHHHHH----------HhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999984 56789999999999999999999999999999999999 7999
Q ss_pred ceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhh
Q 011655 310 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVT 389 (480)
Q Consensus 310 dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~ 389 (480)
||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ .++||||+||+|++|+||++||||
T Consensus 239 ~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~-----~~~GSITai~tV~~~gdD~~dPI~ 313 (458)
T TIGR01041 239 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK-----GKKGSITQMPILTMPGDDITHPIP 313 (458)
T ss_pred cEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCC-----CCCcceEEEEEEEcCCCCCCCchH
Confidence 999999999999999999999999999999999999999999999999974 247999999999999999999999
Q ss_pred hhhhceecEEEEecHHhhhcCCCCCCccccccccchhhh-hhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 390 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL-ESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 390 ~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l-~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
|++++||||||+|||+||++||||||||+.|+||+|+.. .+++ ++++|++++.+++..|+++++++++.+ +|.|.+
T Consensus 314 d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~--~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G~d~l 391 (458)
T TIGR01041 314 DLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGK--TREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEAL 391 (458)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999999999872 1211 679999999988888888888888888 498766
Q ss_pred c
Q 011655 468 L 468 (480)
Q Consensus 468 ~ 468 (480)
.
T Consensus 392 ~ 392 (458)
T TIGR01041 392 S 392 (458)
T ss_pred C
Confidence 4
No 11
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=6.1e-100 Score=806.01 Aligned_cols=355 Identities=24% Similarity=0.348 Sum_probs=333.9
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++++||+|++. +++.|||++++++.+.+++|++++||+.|+.|.+||++++||+|++|||||+|++|+|||+.+.
T Consensus 44 l~~~~~gEl~~i~-~~~~g~Vi~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~-- 120 (497)
T TIGR03324 44 LPGVGFEELLRFP-GGLLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGP-- 120 (497)
T ss_pred cCCCCcCCEEEEC-CCcEEEEEEEcCCeEEEEEecCCcCCcCCCEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCC--
Confidence 4789999999995 4589999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+.
T Consensus 121 -------------~~----------------------------------------------------------------- 122 (497)
T TIGR03324 121 -------------LA----------------------------------------------------------------- 122 (497)
T ss_pred -------------CC-----------------------------------------------------------------
Confidence 10
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
..++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++|+++|+
T Consensus 123 ----------~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~ 192 (497)
T TIGR03324 123 ----------SSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVL 192 (497)
T ss_pred ----------CCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcE
Confidence 013578877776 8999999999999999999999999999999999999999999 579999999997
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||.+|++++ .+.++|+|||+|++|+|+||.+|+++||+|+|+||||||+|+|||+++||
T Consensus 193 ~V~~~IGeR~rev~e~i~~l----------~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~Dd 262 (497)
T TIGR03324 193 CIYCAIGQRASAVAKVVANL----------REHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDD 262 (497)
T ss_pred EEEEEeccCcHHHHHHHHHh----------hhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 99999999999999999973 67899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||+++.. .++||||+||+|++++||++|||||+++||||
T Consensus 263 lTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~---~~~GSITal~~V~~~~dD~s~pI~d~v~sItD 339 (497)
T TIGR03324 263 LTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEE---LGGGSLTALPIIETEAQNISAYIPTNLISITD 339 (497)
T ss_pred hhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCC---CCCcceeEEEEEEcCCCCCCCcchHhheeccc
Confidence 999999999999999999999999999999999999999997521 13599999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||++||||||||+.|+||+|..+ ++++|++++.++|+.|++|+|+++++++|++
T Consensus 340 GqIvLsr~La~~G~~PAIDv~~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~ 401 (497)
T TIGR03324 340 GQIYLSPTLFELGVLPAVDVGKSVSRVGGKA------QLAAYRAVAGDLKLAYAQFEELETFARFGAR 401 (497)
T ss_pred eEEEEcHHHHhCCCCCcCCCccccccCCccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999988 8899999999999999999999999999976
No 12
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.4e-99 Score=802.51 Aligned_cols=360 Identities=26% Similarity=0.376 Sum_probs=328.4
Q ss_pred CCCccCCEEEec--CC-cEEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~--~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~-~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+++++||+|+|. ++ .+.|||+++++|.+.+|+|++|.||+ .|++|.+||++++|++|++|||||||++|||||+.+
T Consensus 21 ~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg~~lLGRVvD~~G~PlD~~~ 100 (460)
T PRK04196 21 EGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGP 100 (460)
T ss_pred CCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcCcccccCEECccCCCccCCC
Confidence 478999999994 23 37999999999999999999999999 899999999999999999999999999999999853
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
+. ..
T Consensus 101 ~i---------------~~------------------------------------------------------------- 104 (460)
T PRK04196 101 EI---------------IP------------------------------------------------------------- 104 (460)
T ss_pred CC---------------CC-------------------------------------------------------------
Confidence 11 00
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.++||+..++| +++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.+|++++++|
T Consensus 105 --------------~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~~d 170 (460)
T PRK04196 105 --------------EKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVL 170 (460)
T ss_pred --------------CccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHHHHHHHHhhhhc
Confidence 01345544444 899999999999999999999999999999999999999999999999998887
Q ss_pred ------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH-HCCC
Q 011655 237 ------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGY 309 (480)
Q Consensus 237 ------v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr-d~G~ 309 (480)
+|||++||||++||+||++++ .+.++|+|||+|++|+|+||.+|++++|+|+|+||||| |||+
T Consensus 171 ~~~~~~v~V~~~iGeRgrEv~e~~~~~----------~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~ 240 (460)
T PRK04196 171 GEEENFAVVFAAMGITFEEANFFMEDF----------EETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGM 240 (460)
T ss_pred cCCCceEEEEEEeccccHHHHHHHHHH----------HhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999984 55788999999999999999999999999999999999 7999
Q ss_pred ceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhh
Q 011655 310 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVT 389 (480)
Q Consensus 310 dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~ 389 (480)
||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||++. .++||||+||+|++++||++||||
T Consensus 241 ~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~-----~~~GSITai~~V~~~gdD~~dpI~ 315 (460)
T PRK04196 241 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK-----GKKGSITQIPILTMPDDDITHPIP 315 (460)
T ss_pred cEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCC-----CCCeeeEEEEEEEcCCCCCCCchh
Confidence 999999999999999999999999999999999999999999999999974 257999999999999999999999
Q ss_pred hhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhh-hhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 390 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 390 ~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
|++++||||||+|||+||++||||||||+.|+||+|+.+- +++ +.++|++++.+++..|++|++++++.+ +|.|.+
T Consensus 316 d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~--~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G~~~l 393 (460)
T PRK04196 316 DLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGK--TREDHKDVANQLYAAYARGKDLRELAAIVGEEAL 393 (460)
T ss_pred hhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999999999999998761 111 239999999999999999999999998 587766
Q ss_pred c
Q 011655 468 L 468 (480)
Q Consensus 468 ~ 468 (480)
.
T Consensus 394 ~ 394 (460)
T PRK04196 394 S 394 (460)
T ss_pred C
Confidence 4
No 13
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.9e-99 Score=791.35 Aligned_cols=351 Identities=30% Similarity=0.440 Sum_probs=328.3
Q ss_pred CCCCccCCEEEecC---C-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccc
Q 011655 1 MNGAAMYELVRVGH---D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTI 76 (480)
Q Consensus 1 l~~a~igE~v~v~~---~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~ 76 (480)
++++++||+|+|+. . .+.|||++++++++.+|+|++|+||++|++|++||++++||+|++|||||||++|||||+.
T Consensus 39 ~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~ 118 (439)
T PRK06936 39 VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGG 118 (439)
T ss_pred eCCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCCCCEEEeCCCceEEEeCccccCCEECCCCCccCCC
Confidence 36899999999952 2 4899999999999999999999999999999999999999999999999999999999984
Q ss_pred cccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccce
Q 011655 77 AIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDT 156 (480)
Q Consensus 77 ~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~ 156 (480)
+. +..
T Consensus 119 ~~---------------~~~------------------------------------------------------------ 123 (439)
T PRK06936 119 HP---------------PEP------------------------------------------------------------ 123 (439)
T ss_pred CC---------------CCc------------------------------------------------------------
Confidence 21 100
Q ss_pred EEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 157 VLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 157 v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.++||+..++| +++|.++++||.|||++||.++|+++|||++|||++|+|||||+++|+++.++
T Consensus 124 ---------------~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~ 188 (439)
T PRK06936 124 ---------------AAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEV 188 (439)
T ss_pred ---------------cceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCCCC
Confidence 01356655555 79999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeec
Q 011655 236 DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMA 315 (480)
Q Consensus 236 dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~ 315 (480)
|++||++||||+|||+||+++. .+++.|+|||+|++|+|+||.+|++++|+|+|+||||||||+|||+++
T Consensus 189 dv~V~~liGERgrEv~ef~~~~----------l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~ 258 (439)
T PRK06936 189 DVTVLALIGERGREVREFIESD----------LGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLM 258 (439)
T ss_pred CEEEEEEEccCcHHHHHHHHHH----------hcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 9999999999999999999761 345669999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhce
Q 011655 316 DSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSI 395 (480)
Q Consensus 316 Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i 395 (480)
||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++|+||++|||+|++++|
T Consensus 259 DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~-------~~GSIT~i~tVl~~gdD~~dpI~d~~~si 331 (439)
T PRK06936 259 DSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS-------DKGSITALYTVLVEGDDMTEPVADETRSI 331 (439)
T ss_pred cchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-------CCcceeeeEEEEccCCCCCcchHHHhhhh
Confidence 99999999999999999999999999999999999999999983 57999999999999999999999999999
Q ss_pred ecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 396 VQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 396 ~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++++++|+
T Consensus 332 lDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~la~y~e~e~li~iG~ 394 (439)
T PRK06936 332 LDGHIILSRKLAAANHYPAIDVLRSASRVMNQI------VSKEHKTWAGRLRELLAKYEEVELLLQIGE 394 (439)
T ss_pred cceEEEECHHHHhCCCCCccCCcccccccchhh------CCHHHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence 999999999999999999999999999999988 899999999999999999999999999976
No 14
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.1e-98 Score=785.24 Aligned_cols=352 Identities=27% Similarity=0.407 Sum_probs=329.2
Q ss_pred CCCccCCEEEec--CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccccc
Q 011655 2 NGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 79 (480)
Q Consensus 2 ~~a~igE~v~v~--~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~ 79 (480)
+.+.+||+|+|+ ++.+.||||+|+++.+.+|+|++|+||++|++|.+||++++||+|++|||||||++|+|||+.++
T Consensus 42 ~~~~ige~~~i~~~~~~~~~EVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~- 120 (444)
T PRK08972 42 CRAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGP- 120 (444)
T ss_pred CCCCCCCEEEEecCCCcEEEEEEEecCCEEEEEECCCcCCCCCCCEEEECCCccEEEcChhhcCCeECCCCCCcCCCCC-
Confidence 468999999994 34599999999999999999999999999999999999999999999999999999999998531
Q ss_pred CCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEE
Q 011655 80 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 80 ~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~ 159 (480)
++.
T Consensus 121 --------------~~~--------------------------------------------------------------- 123 (444)
T PRK08972 121 --------------IYT--------------------------------------------------------------- 123 (444)
T ss_pred --------------CCC---------------------------------------------------------------
Confidence 111
Q ss_pred EEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
.++||+..++| +++|.++++||+||+++||.++|+++|||++|||++|+|||||+.+|+++..+|++
T Consensus 124 ------------~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~dv~ 191 (444)
T PRK08972 124 ------------DQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVI 191 (444)
T ss_pred ------------CccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccCCCCCEE
Confidence 12356655555 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST 318 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsl 318 (480)
||++||||++||+||++++ .+++.|+|||+|++|+|+||.+|++++|+|+|+||||||+|+|||+++||+
T Consensus 192 Vi~lIGER~rEv~efi~~~----------l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 192 VVGLVGERGREVKEFIEEI----------LGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred EEEEEcCChHHHHHHHHHh----------hccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 9999999999999999973 456779999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecE
Q 011655 319 SRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQV 398 (480)
Q Consensus 319 tr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg 398 (480)
||||+|+||||+++||||+++||||++|+.|++|+||||+.. +++||||+||||++|+||++|||||++++|+||
T Consensus 262 TR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~-----~~~GSITai~tVl~~gdD~~dpI~d~~~silDG 336 (444)
T PRK08972 262 TRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGG-----PGQGSITAFYTVLTEGDDLQDPIADASRAILDG 336 (444)
T ss_pred HHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCC-----CCCceeeeEEEEEEeCCCCCcchHHhhhhhcce
Confidence 999999999999999999999999999999999999999863 247999999999999999999999999999999
Q ss_pred EEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 399 FWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 399 ~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|++++|||++|.
T Consensus 337 hIvLsr~La~~g~yPAIDvl~S~SR~~~~i------~~~~h~~~a~~~r~~ls~y~~~e~li~~g~ 396 (444)
T PRK08972 337 HIVLSRELADSGHYPAIDIEASISRVMPMV------ISEEHLEAMRRVKQVYSLYQQNRDLISIGA 396 (444)
T ss_pred EEEEcHHHHhCCCCCeeCCccccccCchhc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998 899999999999999999999999999775
No 15
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.3e-98 Score=799.23 Aligned_cols=354 Identities=25% Similarity=0.340 Sum_probs=331.0
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|+|. +++.|||++++++.+.+|+|++++||+.|+.|++||++++||+|++|||||||++|||||+.++
T Consensus 45 ~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~--- 120 (502)
T PRK09281 45 DNVMAGELLEFP-GGVYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGP--- 120 (502)
T ss_pred cccccCCEEEEC-CCcEEEEEEEcCCeEEEEEecCcccccCCCeeeecCCceEEecCHHhcCCEEccCCCCcCCCCC---
Confidence 478999999996 4589999999999999999999999999999999999999999999999999999999998531
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+..
T Consensus 121 ------------~~~----------------------------------------------------------------- 123 (502)
T PRK09281 121 ------------IEA----------------------------------------------------------------- 123 (502)
T ss_pred ------------CCC-----------------------------------------------------------------
Confidence 100
Q ss_pred ECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-E
Q 011655 162 FQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-V 238 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv-~ 238 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++|+++|+ |
T Consensus 124 ----------~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~ 193 (502)
T PRK09281 124 ----------TETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVIC 193 (502)
T ss_pred ----------CceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHHHHHHHhcCCCeEE
Confidence 12466655555 8999999999999999999999999999999999999999999 678999999998 5
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST 318 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsl 318 (480)
||++||||++|+++|++++ .+.++|+|||+|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+
T Consensus 194 V~~~IGer~~ev~e~~~~~----------~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~Ddl 263 (502)
T PRK09281 194 IYVAIGQKASTVAQVVRKL----------EEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDL 263 (502)
T ss_pred EEEEecCChHHHHHHHHHH----------hhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 9999999999999999983 677899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecE
Q 011655 319 SRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQV 398 (480)
Q Consensus 319 tr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg 398 (480)
||||+|+||||+++||||+++||||++|+.+++|+||||+++... ++||||+||+|++|+||++|||||+++|||||
T Consensus 264 Tr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~---~~GSITal~~V~~~~dD~s~pI~d~~~sItDG 340 (502)
T PRK09281 264 SKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEL---GGGSLTALPIIETQAGDVSAYIPTNVISITDG 340 (502)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCC---CCccEEEEEEEECCCCCCCCcchHhhhcccce
Confidence 999999999999999999999999999999999999999986321 36999999999999999999999999999999
Q ss_pred EEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 399 FWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 399 ~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++++++|.+
T Consensus 341 qIvLsr~La~~G~~PAIdv~~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~e~~~l~~~g~~ 401 (502)
T PRK09281 341 QIFLESDLFNAGIRPAINVGISVSRVGGAA------QIKAMKKVAGTLRLDLAQYRELEAFAQFGSD 401 (502)
T ss_pred EEEEcHHHHhCCCCCccCCcccccccCCcc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998 7899999999999999999999999999954
No 16
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.8e-98 Score=792.42 Aligned_cols=350 Identities=28% Similarity=0.421 Sum_probs=325.1
Q ss_pred CccCCEEEecC--CcEEEEEEEE-eCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 4 AAMYELVRVGH--DNLIGEIIRL-EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 4 a~igE~v~v~~--~~l~gEVi~~-~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
+++||+|+|.. +.+.+||+++ +++.+.+++|++|+||++|+.|.+||++++||+|++|||||||++|+|||+.+.
T Consensus 24 ~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~-- 101 (461)
T PRK12597 24 PPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPP-- 101 (461)
T ss_pred cCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeeccccccCCCC--
Confidence 89999999953 4588999999 999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
++.
T Consensus 102 -------------~~~---------------------------------------------------------------- 104 (461)
T PRK12597 102 -------------LPA---------------------------------------------------------------- 104 (461)
T ss_pred -------------CCC----------------------------------------------------------------
Confidence 110
Q ss_pred EECCeEEEEeecccccccCCC-CcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC---CC
Q 011655 161 EFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SD 236 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~-p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~---~d 236 (480)
.++||+..++ ++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.||+++.. +|
T Consensus 105 -----------~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~d 173 (461)
T PRK12597 105 -----------EERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSG 173 (461)
T ss_pred -----------cceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHHHHHHHHHhhCCC
Confidence 1246665544 48999999999999999999999999999999999999999999999988765 89
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeec
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMA 315 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~ 315 (480)
++||++||||+|||+||++++ .+++.++||++|++|+|+||.+|++++|+|+|+||||||+ |+||||++
T Consensus 174 v~V~~liGER~rEv~ef~~~~----------~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~ 243 (461)
T PRK12597 174 SSVFAGVGERSREGHELYHEM----------KESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFI 243 (461)
T ss_pred EEEEEcCCcchHHHHHHHHHH----------HhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 999999999999999999983 5678899999999999999999999999999999999997 99999999
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhce
Q 011655 316 DSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSI 395 (480)
Q Consensus 316 Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i 395 (480)
||+||||+|+||||+++||||+++||||++|++|++|+|||++. ++||||+||||++|+||++|||+|++++|
T Consensus 244 DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~-------~~GSIT~i~tVl~~~dD~~dPI~d~~~~i 316 (461)
T PRK12597 244 DNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST-------KNGSITSIQAVYVPADDLTDPAAVAIFSH 316 (461)
T ss_pred ccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC-------CCccccEEEEEEecCCCCCCccHHHHHhh
Confidence 99999999999999999999999999999999999999999873 57999999999999999999999999999
Q ss_pred ecEEEEecHHhhhcCCCCCCccccccccch-hhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC-cc
Q 011655 396 VQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY-LW 466 (480)
Q Consensus 396 ~dg~i~Lsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~-d~ 466 (480)
|||||+|||+||++||||||||+.|+||+| +.+ .+++|++++.++|++|++|+|+++|+++|. +.
T Consensus 317 lDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i------~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~ 383 (461)
T PRK12597 317 LDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLV------VGERHYDAAIEVKRILQRYKELEDVIAILGIDE 383 (461)
T ss_pred cceEEEEcHHHHhCCCCCccCCcccccccccccc------CCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCcc
Confidence 999999999999999999999999999998 555 689999999999999999999999999554 44
No 17
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2.4e-98 Score=787.81 Aligned_cols=350 Identities=30% Similarity=0.478 Sum_probs=326.1
Q ss_pred CCCccCCEE---EecC-C--cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccc
Q 011655 2 NGAAMYELV---RVGH-D--NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLK 74 (480)
Q Consensus 2 ~~a~igE~v---~v~~-~--~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd 74 (480)
+.+.+||+| ++.. + .+.+||++ |+++.+.+++|+++.||+.|+.|.+|+++++||+|++|||||+|++|+|||
T Consensus 18 ~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg~~lLGRViD~~G~pid 97 (461)
T TIGR01039 18 EQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPID 97 (461)
T ss_pred CCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcChhhcCCEEccCCcccC
Confidence 568899999 8832 2 48999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCcccc
Q 011655 75 TIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~ 154 (480)
+.+. + ++
T Consensus 98 ~~~~---------------~----------------------------------------~~------------------ 104 (461)
T TIGR01039 98 EKGP---------------I----------------------------------------PA------------------ 104 (461)
T ss_pred CCCC---------------C----------------------------------------CC------------------
Confidence 7421 0 00
Q ss_pred ceEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 155 DTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 155 ~~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++||++.++| +++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.||+++.
T Consensus 105 -----------------~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~~~~~~~ 167 (461)
T TIGR01039 105 -----------------KERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNI 167 (461)
T ss_pred -----------------CcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHHHHHHHH
Confidence 13578876666 899999999999999999999999999999999999999999999999886
Q ss_pred CCC---EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCC
Q 011655 234 NSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGY 309 (480)
Q Consensus 234 ~~d---v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G~ 309 (480)
.+| ++||++||||+|||+||++++ .+.+.|+|||+|+||+|+||.+|++++|+|+|+|||||| +|+
T Consensus 168 ~~~~~~v~V~alIGER~rEv~ef~~~~----------~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~ 237 (461)
T TIGR01039 168 AKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQ 237 (461)
T ss_pred HhcCCCeEEEEEecCCchHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555 999999999999999999973 567899999999999999999999999999999999999 899
Q ss_pred ceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhh
Q 011655 310 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVT 389 (480)
Q Consensus 310 dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~ 389 (480)
||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+||+|++|+||++|||+
T Consensus 238 ~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-------~~GSITai~tVl~~gdD~~dPi~ 310 (461)
T TIGR01039 238 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST-------KTGSITSVQAVYVPADDLTDPAP 310 (461)
T ss_pred eeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC-------CCCceeEEEEEEccCCCCCCccH
Confidence 99999999999999999999999999999999999999999999999983 57999999999999999999999
Q ss_pred hhhhceecEEEEecHHhhhcCCCCCCccccccccch-hhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 390 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 390 ~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|++++||||||+|||+||++||||||||+.|+||+| +.+ ++++|++++.++|++|++|+|+++|+++|.
T Consensus 311 d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~------~~~~h~~~a~~~r~~la~y~e~~~li~i~g 380 (461)
T TIGR01039 311 ATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSV------VGEEHYDVARGVQQILQRYKELQDIIAILG 380 (461)
T ss_pred HHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCcc------CCHHHHHHHHHHHHHHHhhhHHHHHHHHhC
Confidence 999999999999999999999999999999999999 655 789999999999999999999999999654
No 18
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=1.1e-97 Score=793.92 Aligned_cols=354 Identities=26% Similarity=0.339 Sum_probs=329.4
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|++. +++.|||++++++.+.+++|+++.||+.|+.|++||++++||+|++|||||+|++|||||+.++..
T Consensus 44 ~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~- 121 (501)
T TIGR00962 44 ENVMSGELIEFE-GGVQGIALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPID- 121 (501)
T ss_pred cCCCCCCEEEEC-CCeEEEEEEecCCeEEEEEecCCcCCCCCCeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCcC-
Confidence 488999999995 458999999999999999999999999999999999999999999999999999999999853110
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
.
T Consensus 122 --------------~----------------------------------------------------------------- 122 (501)
T TIGR00962 122 --------------S----------------------------------------------------------------- 122 (501)
T ss_pred --------------C-----------------------------------------------------------------
Confidence 0
Q ss_pred ECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-E
Q 011655 162 FQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-V 238 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv-~ 238 (480)
..+||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++|+++|+ |
T Consensus 123 ----------~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~ 192 (501)
T TIGR00962 123 ----------DEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYC 192 (501)
T ss_pred ----------CCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHHHHHHhhcCCCeEE
Confidence 01245544444 8999999999999999999999999999999999999999999 678999999998 5
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST 318 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsl 318 (480)
||++||||++||++|++++ .+.++|+|||+|++|+|+||.+|++++|+|+|+||||||+|+||||++||+
T Consensus 193 V~~~IGer~rev~e~~~~~----------~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddl 262 (501)
T TIGR00962 193 VYVAIGQKASTVAQVVRKL----------EEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDL 262 (501)
T ss_pred EEEEccCChHHHHHHHHHH----------HhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecch
Confidence 9999999999999999983 667899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecE
Q 011655 319 SRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQV 398 (480)
Q Consensus 319 tr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg 398 (480)
||||+|+||||+++||||+++||||++|+.+++|+||||+++..+ ++||||+||+|++++||++|||||+++|||||
T Consensus 263 tr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~---g~GSITal~~V~~~~dD~s~pI~~~~~sItDG 339 (501)
T TIGR00962 263 SKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEK---GGGSLTALPIIETQAGDVSAYIPTNVISITDG 339 (501)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCC---CCcceEEEEEEECCCCCCCCcchHhhhhhcce
Confidence 999999999999999999999999999999999999999986322 25999999999999999999999999999999
Q ss_pred EEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 399 FWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 399 ~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|+++++++|.+
T Consensus 340 qIvLsr~La~~G~~PAIdv~~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~e~~~l~~~g~~ 400 (501)
T TIGR00962 340 QIFLESDLFNSGIRPAINVGLSVSRVGGAA------QIKAMKQVAGSLRLELAQYRELEAFSQFASD 400 (501)
T ss_pred EEEEcHhHHhCCCCCccCCccchhccCccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998 7899999999999999999999999999854
No 19
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.3e-97 Score=790.70 Aligned_cols=355 Identities=28% Similarity=0.382 Sum_probs=332.3
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++. +++.|||++++++.+.+++|++++||+.|+.|++||++++||+|++|||||+|++|||||+.++
T Consensus 44 l~~~~~ge~~~i~-~~~~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~-- 120 (502)
T PRK13343 44 LPDAALDELLRFE-GGSRGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGP-- 120 (502)
T ss_pred CCCCCCCCEEEEC-CCcEEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeecCHHhcCCEECCCCCcccCCCC--
Confidence 4789999999995 4589999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+..
T Consensus 121 -------------i~~---------------------------------------------------------------- 123 (502)
T PRK13343 121 -------------LQA---------------------------------------------------------------- 123 (502)
T ss_pred -------------CCC----------------------------------------------------------------
Confidence 100
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++|+++|+
T Consensus 124 -----------~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~ 192 (502)
T PRK13343 124 -----------TARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQKDSDVI 192 (502)
T ss_pred -----------CceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHHHHHhhcCCCEE
Confidence 12456655555 8999999999999999999999999999999999999999999 689999999998
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .+.++|+||+||++|+|+||.+|+++||+|+++||||||+|+|||+++||
T Consensus 193 ~V~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~Dd 262 (502)
T PRK13343 193 CVYVAIGQKASAVARVIETL----------REHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDD 262 (502)
T ss_pred EEEEEeccChHHHHHHHHHH----------HhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 59999999999999999973 67899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||+++.. .++||||+||+|++++||++|||||+++||||
T Consensus 263 lTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~---~~gGSITal~~V~~~~dD~s~pI~~~v~sItD 339 (502)
T PRK13343 263 LSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPE---LGGGSLTALPIIETLAGELSAYIPTNLISITD 339 (502)
T ss_pred hHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCC---CCCcceEEEEEEEcCCCCCCCcchhhhhcccc
Confidence 999999999999999999999999999999999999999998531 13699999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||++||||||||+.|+||+|..+ ++++|++++.++|+.|++|+|+++++++|.+
T Consensus 340 GqIvLsr~La~~G~~PAIDv~~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~ 401 (502)
T PRK13343 340 GQIYLDSDLFAAGQRPAVDVGLSVSRVGGKA------QHPAIRKESGRLRLDYAQFLELEAFTRFGGL 401 (502)
T ss_pred eEEEECHHHHhCCCCCccCCccchhccCccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 8999999999999999999999999999976
No 20
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=3.7e-97 Score=782.02 Aligned_cols=354 Identities=24% Similarity=0.324 Sum_probs=329.4
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++.+||+|++. +++.|||++++++.+.+++|+++.||+.|+.|++||++++||+|++|||||+|++|+|||+.+.
T Consensus 24 ~~~~~ge~~~i~-~~~~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~piDg~~~--- 99 (485)
T CHL00059 24 DEVMAGELVEFE-DGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGE--- 99 (485)
T ss_pred ccCCcCCEEEEC-CCCEEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhhcCCEECCCCCeeCCCCC---
Confidence 478999999996 4589999999999999999999999999999999999999999999999999999999998531
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+..
T Consensus 100 ------------~~~----------------------------------------------------------------- 102 (485)
T CHL00059 100 ------------ISA----------------------------------------------------------------- 102 (485)
T ss_pred ------------cCC-----------------------------------------------------------------
Confidence 100
Q ss_pred ECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-E
Q 011655 162 FQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-V 238 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv-~ 238 (480)
..+||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+||+++|+ |
T Consensus 103 ----------~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I~~q~~~dv~c 172 (485)
T CHL00059 103 ----------SESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVIC 172 (485)
T ss_pred ----------CccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHHHHHHhcccCCeEE
Confidence 01355655544 8999999999999999999999999999999999999999999 678999999997 5
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST 318 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsl 318 (480)
||++||||++||++|++++ .+.++|+||++|++|+|+||.+|+++||+|||+|||||++|+|||+++||+
T Consensus 173 V~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 173 VYVAIGQKASSVAQVVTTL----------QERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDL 242 (485)
T ss_pred EEEEecCCchHHHHHHHHh----------hcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcCh
Confidence 9999999999999999973 678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecE
Q 011655 319 SRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQV 398 (480)
Q Consensus 319 tr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg 398 (480)
||||+|+||||+++||||+++||||++|+.+++|+||||+++.. .++||||+||+|++++||++|||||+++|||||
T Consensus 243 Tr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~---~~~GSITal~~V~~~~dD~s~pI~~~v~sItDG 319 (485)
T CHL00059 243 SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ---LGEGSMTALPIVETQAGDVSAYIPTNVISITDG 319 (485)
T ss_pred hHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCC---CCCcceEEEEEEEccCCCCCCcchHhhhhhcce
Confidence 99999999999999999999999999999999999999998532 136999999999999999999999999999999
Q ss_pred EEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 399 FWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 399 ~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||+|||+||++|||||||++.|+||++..+ ++++|++++.++|+.|++|+|++++++++.+
T Consensus 320 qIvLsr~La~~G~~PAIDv~~SvSRvg~~a------q~~~~~~~a~~lr~~la~y~e~e~~~~~~~~ 380 (485)
T CHL00059 320 QIFLSADLFNAGIRPAINVGISVSRVGSAA------QIKAMKQVAGKLKLELAQFAELEAFAQFASD 380 (485)
T ss_pred EEEEcHHHHhCCCCCCcCcccchhcCCchh------hcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998 8899999999999999999999999997543
No 21
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=4.8e-97 Score=782.64 Aligned_cols=358 Identities=28% Similarity=0.430 Sum_probs=321.7
Q ss_pred CCCcc---CCEEEecC-C------cEEEEEEEEeC-CEEEEEEecCCCCCCCCCeEEEcCCccEEecCcccccccccccc
Q 011655 2 NGAAM---YELVRVGH-D------NLIGEIIRLEG-DSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQ 70 (480)
Q Consensus 2 ~~a~i---gE~v~v~~-~------~l~gEVi~~~~-~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglG 70 (480)
+.+.+ ||+|.+.. + .+.+||+++.+ +.+.+++|++++||+.|+.|.+||++++||+|++|||||+|++|
T Consensus 32 ~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVid~~G 111 (494)
T CHL00060 32 PPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLG 111 (494)
T ss_pred cCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCCcceeecchhhcCCEEeecC
Confidence 34566 99999942 2 48999999999 99999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCC
Q 011655 71 RPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQ 150 (480)
Q Consensus 71 rPLd~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~ 150 (480)
||||+.+. +..
T Consensus 112 ~piDg~~~---------------~~~------------------------------------------------------ 122 (494)
T CHL00060 112 EPVDNLGP---------------VDT------------------------------------------------------ 122 (494)
T ss_pred cccCCCCC---------------CCC------------------------------------------------------
Confidence 99998531 100
Q ss_pred ccccceEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHH
Q 011655 151 YSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQAL 229 (480)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~i 229 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.||
T Consensus 123 ---------------------~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvGKs~L~~~~ 181 (494)
T CHL00060 123 ---------------------RTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMEL 181 (494)
T ss_pred ---------------------CccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCChhHHHHHH
Confidence 12456644444 89999999999999999999999999999999999999999999999
Q ss_pred hhc-CC--CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011655 230 SKY-SN--SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD 306 (480)
Q Consensus 230 a~~-~~--~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd 306 (480)
+++ ++ .|++||++||||+|||+||++++.+... + + .+...++|+++|++|+|+||.+|++++|+|+|+||||||
T Consensus 182 ~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~-~-~-~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~tiAEyfrd 258 (494)
T CHL00060 182 INNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGV-I-N-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRD 258 (494)
T ss_pred HHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCc-c-c-cCcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 887 54 4999999999999999999998633221 1 0 111237899999999999999999999999999999999
Q ss_pred CCC-ceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCC
Q 011655 307 MGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFS 385 (480)
Q Consensus 307 ~G~-dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~ 385 (480)
+|+ ||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. .+||||+||+|++|+||++
T Consensus 259 ~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~-------~~GSITai~tVl~~gdD~t 331 (494)
T CHL00060 259 VNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-------KEGSITSIQAVYVPADDLT 331 (494)
T ss_pred cCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC-------CCCCeeEEEEEECCCCCCC
Confidence 986 99999999999999999999999999999999999999999999999985 4699999999999999999
Q ss_pred ChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccc-hhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 386 DPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 386 dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~-~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|||||+++|||||||+|||+||++||||||||+.|+||+ ++.+ ++++|++++.++|++|++|+|+++|+++|.
T Consensus 332 dPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~------v~~~h~~~a~~~r~~la~y~e~e~li~~~g 405 (494)
T CHL00060 332 DPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI------VGEEHYETAQRVKQTLQRYKELQDIIAILG 405 (494)
T ss_pred CcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhccccc------CCHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998 6666 789999999999999999999999999555
Q ss_pred c
Q 011655 465 L 465 (480)
Q Consensus 465 d 465 (480)
.
T Consensus 406 ~ 406 (494)
T CHL00060 406 L 406 (494)
T ss_pred c
Confidence 3
No 22
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8e-97 Score=776.50 Aligned_cols=348 Identities=27% Similarity=0.412 Sum_probs=323.7
Q ss_pred CccCCEEEecC-CcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 4 AAMYELVRVGH-DNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 4 a~igE~v~v~~-~~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
..+++.+.+.. +++.+||++ ++++.+.+++|++|+||+.|+.|.+||++++||+|++|||||+|++|+|||+.++
T Consensus 20 p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lLGRVlD~~G~PiD~~~~--- 96 (449)
T TIGR03305 20 PAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREP--- 96 (449)
T ss_pred cchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhcCCEEccCccccCCCCC---
Confidence 46788888874 679999999 9999999999999999999999999999999999999999999999999998531
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+..
T Consensus 97 ------------~~~----------------------------------------------------------------- 99 (449)
T TIGR03305 97 ------------PKD----------------------------------------------------------------- 99 (449)
T ss_pred ------------CCC-----------------------------------------------------------------
Confidence 100
Q ss_pred ECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC---CCE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDT 237 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~---~dv 237 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.+|++|.. +|+
T Consensus 100 ----------~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v 169 (449)
T TIGR03305 100 ----------VEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGV 169 (449)
T ss_pred ----------ccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCE
Confidence 12466655555 8999999999999999999999999999999999999999999999988853 799
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCCceeeecc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMAD 316 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G~dVlll~D 316 (480)
+||++||||++|++||++++ .+.++|+||++|++|+|+||.+|++++|+|+|+|||||| +|+||||++|
T Consensus 170 ~V~~~iGeR~rEv~e~~~~~----------~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~D 239 (449)
T TIGR03305 170 SIFCGIGERCREGEELYREM----------KEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLID 239 (449)
T ss_pred EEEEEeccCcHHHHHHHHHH----------hhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEec
Confidence 99999999999999999973 567899999999999999999999999999999999998 9999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
|+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+|++|++|+||++|||||++++||
T Consensus 240 slTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~-------~~GSIT~i~~V~~~~dD~~dPi~d~~~sil 312 (449)
T TIGR03305 240 NIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT-------SDGAITSIQAVYVPADDFTDPAAVHTFSHL 312 (449)
T ss_pred ChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC-------CCcCeeEEEEEEccCCCCCCchhHhhhhhc
Confidence 9999999999999999999999999999999999999999984 569999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccch-hhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||+|||+||++||||||||+.|+||+| +.+ ++++|++++.++|++|++|+|+++|+++|.
T Consensus 313 DG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i------~~~~h~~~a~~~~~~l~~y~e~~~li~~~g 375 (449)
T TIGR03305 313 SASLVLSRKRASEGLYPAIDPLQSTSKMATPGI------VGERHYDLAREVRQTLAQYEELKDIIAMLG 375 (449)
T ss_pred ceEEEEcHHHHhCCCCCccCCCcchhhcCCccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999 555 689999999999999999999999999654
No 23
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=3.2e-96 Score=770.02 Aligned_cols=360 Identities=23% Similarity=0.351 Sum_probs=318.0
Q ss_pred CCCccCCEEEe--cCCc-EEEEEEEEeCCEEEEEEecCCCCCCC-CCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRV--GHDN-LIGEIIRLEGDSATIQVYEETAGLMV-NDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v--~~~~-l~gEVi~~~~~~a~iqv~e~t~Gl~~-G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+++++||+|+| .++. +.|||++|+++.+.+|+|++++||++ |+.|.+||++++||+|++|||||||++|+|||+.+
T Consensus 19 ~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~~lLGRVid~~G~piD~~~ 98 (466)
T TIGR01040 19 KFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 98 (466)
T ss_pred CCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCcccccCEECccccccCCCC
Confidence 48999999999 3333 78999999999999999999999998 99999999999999999999999999999999853
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
. +..
T Consensus 99 ~---------------~~~------------------------------------------------------------- 102 (466)
T TIGR01040 99 P---------------VLA------------------------------------------------------------- 102 (466)
T ss_pred C---------------CCC-------------------------------------------------------------
Confidence 1 100
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC--
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN-- 234 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~-- 234 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.||++|++
T Consensus 103 --------------~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~~i~~~~~~~ 168 (466)
T TIGR01040 103 --------------EDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLV 168 (466)
T ss_pred --------------CceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHHHHHHhhccc
Confidence 02355655554 8899999999999999999999999999999999999999999999999987
Q ss_pred ----CC---------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 011655 235 ----SD---------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 301 (480)
Q Consensus 235 ----~d---------v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiA 301 (480)
+| ++||++|||| +|+.+|+++ .| .++++|+|||+|++|+|+||.+|++++|+|+|+|
T Consensus 169 ~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~------~l---~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 238 (466)
T TIGR01040 169 KLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQ------DF---EENGSMERVCLFLNLANDPTIERIITPRLALTTA 238 (466)
T ss_pred cccccccccccCCceEEEEEEeeee-hHHHHHHHH------HH---HhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHH
Confidence 67 8999999999 999998875 23 5667899999999999999999999999999999
Q ss_pred HHHH-HCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecC
Q 011655 302 EYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP 380 (480)
Q Consensus 302 Eyfr-d~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~ 380 (480)
|||| ++|+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+++ .++||||+||+|++|
T Consensus 239 Eyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~-----~~~GSITai~tV~~~ 313 (466)
T TIGR01040 239 EYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMP 313 (466)
T ss_pred HHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCC-----CCCcceEEEEEEECC
Confidence 9999 6999999999999999999999999999999999999999999999999999974 246999999999999
Q ss_pred CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhh-hhhccCCHHHHHHHHHHHHHHHhhhhHHHH
Q 011655 381 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREVLQREDDLNEI 459 (480)
Q Consensus 381 ~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~L~~y~e~~~l 459 (480)
+||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.+. +++ ..++|++++.++...|++++++.++
T Consensus 314 ~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~--~~~~h~~~a~~l~~~y~~~~~L~~i 391 (466)
T TIGR01040 314 NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM--TRKDHSDVSNQLYACYAIGKDVQAM 391 (466)
T ss_pred CCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCc--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999861 111 1289999998844444444444444
Q ss_pred HH-cCCcccc
Q 011655 460 VQ-VGYLWSL 468 (480)
Q Consensus 460 i~-~G~d~~~ 468 (480)
.. +|.|.+.
T Consensus 392 g~y~G~d~l~ 401 (466)
T TIGR01040 392 KAVVGEEALS 401 (466)
T ss_pred HHhcCCCcCC
Confidence 44 6666654
No 24
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.6e-96 Score=767.84 Aligned_cols=352 Identities=27% Similarity=0.410 Sum_probs=327.2
Q ss_pred CCccCCEEEecC--C-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccccc
Q 011655 3 GAAMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 79 (480)
Q Consensus 3 ~a~igE~v~v~~--~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~ 79 (480)
.+++||+|+|.. + .+.|||++++++++.+++|+++.||+.|+.|++||++++||+|++|||||+|++|+|||+.++
T Consensus 37 ~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~piDg~~~- 115 (442)
T PRK08927 37 ALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGP- 115 (442)
T ss_pred CCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEECChhhCCCEEccCCCCccCCCC-
Confidence 689999999942 3 489999999999999999999999999999999999999999999999999999999998531
Q ss_pred CCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEE
Q 011655 80 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 80 ~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~ 159 (480)
+...
T Consensus 116 --------------~~~~-------------------------------------------------------------- 119 (442)
T PRK08927 116 --------------LPQG-------------------------------------------------------------- 119 (442)
T ss_pred --------------CCCC--------------------------------------------------------------
Confidence 1000
Q ss_pred EEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
..+||+..++| +++|.++++||+||||+||+|+|+++|||++|||++|+|||||+++|+++.++|++
T Consensus 120 ------------~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~~ 187 (442)
T PRK08927 120 ------------PVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVS 187 (442)
T ss_pred ------------cccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCEE
Confidence 01356655555 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST 318 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsl 318 (480)
||++||||++||+||+++. .++..++|||+|++|+|+||.+|++++|+|+++||||||+|+||||++||+
T Consensus 188 v~~~iGER~rEv~ef~~~~----------l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 188 VIGLIGERGREVQEFLQDD----------LGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred EEEEEecCcHHHHHHHHHH----------hhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 9999999999999999751 344569999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecE
Q 011655 319 SRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQV 398 (480)
Q Consensus 319 tr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg 398 (480)
||||+|+||||+++||||+++||||++|+.|++||||||+.. +++||||+||||++|+||++|||+|++++|+||
T Consensus 258 Tr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~-----~~~GSIT~i~tVlv~gdD~~dpi~d~~~~i~Dg 332 (442)
T PRK08927 258 TRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGP-----IGEGTITGLFTVLVDGDDHNEPVADAVRGILDG 332 (442)
T ss_pred HHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCC-----CCCeeeeeeeeeEccCCCCCCchhhhhhccccE
Confidence 999999999999999999999999999999999999999963 257999999999999999999999999999999
Q ss_pred EEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 399 FWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 399 ~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+++++++++|.
T Consensus 333 ~ivLsr~La~~g~~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~edli~lg~ 392 (442)
T PRK08927 333 HIVMERAIAERGRYPAINVLKSVSRTMPGC------NDPEENPLVRRARQLMATYADMEELIRLGA 392 (442)
T ss_pred EEEEcHHHHhCCCCCccCCccccccccccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998 899999999999999999999999999776
No 25
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.8e-95 Score=771.81 Aligned_cols=355 Identities=17% Similarity=0.221 Sum_probs=326.9
Q ss_pred CCCccCCEEEecCC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 2 NGAAMYELVRVGHD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 2 ~~a~igE~v~v~~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
+++++||+|++.++ .+.|+|++++++.+.+++|+++.||+.|+.|.+||++++||+|++|||||+|++|+|||+.++..
T Consensus 19 ~~~~~ge~~~~~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~piDg~g~i~ 98 (507)
T PRK07165 19 YDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDGNIIYPEAQNP 98 (507)
T ss_pred cCCCcCCEEEECCCCeEEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCCEECCCCcccCCCCCCC
Confidence 48899999999532 38999999999999999999999999999999999999999999999999999999999854210
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
. . . .|
T Consensus 99 ~-------------~-~-~~------------------------------------------------------------ 103 (507)
T PRK07165 99 L-------------S-K-KF------------------------------------------------------------ 103 (507)
T ss_pred c-------------c-c-cc------------------------------------------------------------
Confidence 0 0 0 00
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
....||+.+++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++|+++|+
T Consensus 104 ----------~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~~I~~q~~~dv~ 173 (507)
T PRK07165 104 ----------LPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVK 173 (507)
T ss_pred ----------ccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHHHHHHHHhcCCCeE
Confidence 012356655555 8999999999999999999999999999999999999999999 678999999997
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .+.++|+||++|++++| ||.+|+++||+|||+|||||++ +|||+++||
T Consensus 174 ~V~~~IGer~~ev~~~~~~l----------~~~gal~~tvvV~atsd-~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~Dd 241 (507)
T PRK07165 174 CIYVAIGQKRENLSRIYETL----------KEHDALKNTIIIDAPST-SPYEQYLAPYVAMAHAENISYN-DDVLIVFDD 241 (507)
T ss_pred EEEEEccCChHHHHHHHHHh----------hhcCceeeeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhc-CceEEEEcC
Confidence 69999999999999999973 67899999999999985 9999999999999999999999 999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.|++||||||+++ ++||||++|+|++++||++|||||+++||||
T Consensus 242 LTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~------g~GSITalpiV~t~~dDis~pIpdnv~sItD 315 (507)
T PRK07165 242 LTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK------NRKTITALPILQTVDNDITSLISSNIISITD 315 (507)
T ss_pred hHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCC------CCCceEEEEEEECCCCCCCCcchhhhccccC
Confidence 9999999999999999999999999999999999999999984 3589999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||++||||||||+.|+||+|+.+ +++.|.+++..+|++|++|+|+++++++|.+
T Consensus 316 GqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~------q~~~~~~~a~~~r~~la~Y~e~e~~~~~~~~ 377 (507)
T PRK07165 316 GQIVTSSDLFASGKLPAIDIDLSVSRTGSSV------QSKTITKVAGEISKIYRAYKRQLKLSMLDYD 377 (507)
T ss_pred eEEEEcHHHHhCCCCCCcCCccchhhccccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988 8899999999999999999999999998765
No 26
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=4.2e-95 Score=759.71 Aligned_cols=346 Identities=22% Similarity=0.332 Sum_probs=318.8
Q ss_pred CCCccCCEEEec--CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccccc
Q 011655 2 NGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 79 (480)
Q Consensus 2 ~~a~igE~v~v~--~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~ 79 (480)
+++++||+|+|. ++.+.|||++++++.+.+|+|++|+||+.|++|.+||++++||+|++|||||||++|+|||+.++.
T Consensus 21 ~~~~~ge~~~i~~~~~~~~geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~lLGRV~d~~G~PiD~~~~~ 100 (436)
T PRK02118 21 EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPEL 100 (436)
T ss_pred CCCCCCCEEEEEcCCCCEEEEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCccccCCEEccCCcccCCCCCC
Confidence 578999999995 345899999999999999999999999999999999999999999999999999999999974311
Q ss_pred CCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEE
Q 011655 80 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 80 ~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~ 159 (480)
..
T Consensus 101 ---------------~~--------------------------------------------------------------- 102 (436)
T PRK02118 101 ---------------EG--------------------------------------------------------------- 102 (436)
T ss_pred ---------------Cc---------------------------------------------------------------
Confidence 00
Q ss_pred EEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
..||+..++| +++|.++++||+||||+||+|+||+||||++|||++|+|||+|+.+|++|+++|++
T Consensus 103 -------------~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ia~~~~~~v~ 169 (436)
T PRK02118 103 -------------EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAEADII 169 (436)
T ss_pred -------------ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHHHHHHhhCCCeE
Confidence 0134433333 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC-Cceeeeccc
Q 011655 239 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADS 317 (480)
Q Consensus 239 V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G-~dVlll~Ds 317 (480)
||++||||++|+.+|+++| .+.++|+|||+|++++|+||.+|++++++|+|+||||||+| +||||++||
T Consensus 170 Vfa~iGeR~rE~~ef~~~~----------~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~Dd 239 (436)
T PRK02118 170 ILGGMGLTFDDYLFFKDTF----------ENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTD 239 (436)
T ss_pred EEEEeccchhHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccC
Confidence 9999999999999999974 67899999999999999999999999999999999999997 999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++|||||+|++|++||||||+++ ++||||+||+|++|+||++|||||+++||||
T Consensus 240 lTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~------~~GSITai~~V~~p~DD~tdPi~d~~~silD 313 (436)
T PRK02118 240 MTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE------DGGSITIIAVTTMPGDDVTHPVPDNTGYITE 313 (436)
T ss_pred chHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCC------CCeeEEEEEEEEcCCCCcCccHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973 4799999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|||+|||+| ||++.|+||+|+.+... .+.++|+++|.+++++|++|+|+++|+++|.
T Consensus 314 GqIvLsR~l--------ID~l~S~SRl~~~v~g~--~t~~~h~~~a~~l~~~~a~y~e~~dli~iG~ 370 (436)
T PRK02118 314 GQFYLRRGR--------IDPFGSLSRLKQLVIGK--KTREDHGDLMNAMIRLYADSREAKEKMAMGF 370 (436)
T ss_pred cEEEecccc--------ccCccccccccccccCc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 99999999999988211 1237999999999999999999999999995
No 27
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=1.5e-94 Score=761.24 Aligned_cols=363 Identities=24% Similarity=0.305 Sum_probs=329.5
Q ss_pred CCCCccCCEEEe---cCCcEEEEEEEEeCC-EEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccc
Q 011655 1 MNGAAMYELVRV---GHDNLIGEIIRLEGD-SATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTI 76 (480)
Q Consensus 1 l~~a~igE~v~v---~~~~l~gEVi~~~~~-~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~ 76 (480)
++++..||+|++ .++...|.|+.+++| .+.+++|++++||+.|+.|++||++++||+|++|||||+|++|+|||+.
T Consensus 59 l~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~ 138 (574)
T PTZ00185 59 NPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVG 138 (574)
T ss_pred CcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccEEECCcccccCEECCCCcccCCC
Confidence 578999999999 334468999999999 7999999999999999999999999999999999999999999999985
Q ss_pred cccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccce
Q 011655 77 AIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDT 156 (480)
Q Consensus 77 ~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~ 156 (480)
+...+ +| ++. +.
T Consensus 139 ~~~~~-----~g----~i~----------------------------------------~~------------------- 150 (574)
T PTZ00185 139 LLTRS-----RA----LLE----------------------------------------SE------------------- 150 (574)
T ss_pred Ccccc-----CC----CCC----------------------------------------cc-------------------
Confidence 32100 00 000 00
Q ss_pred EEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcC-
Q 011655 157 VLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYS- 233 (480)
Q Consensus 157 v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~- 233 (480)
...||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+||+
T Consensus 151 ---------------~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~~ 215 (574)
T PTZ00185 151 ---------------QTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVR 215 (574)
T ss_pred ---------------cccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEeecCCCCChHHHHHHHHHhhhh
Confidence 02457755555 8999999999999999999999999999999999999999999 47899986
Q ss_pred --------CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 011655 234 --------NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR 305 (480)
Q Consensus 234 --------~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr 305 (480)
++++|||++||||.+||.++.++ | .+.++|+||++|++++|+||.+|+++||+|+|+|||||
T Consensus 216 ~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~-------L---~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFr 285 (574)
T PTZ00185 216 INQQILSKNAVISIYVSIGQRCSNVARIHRL-------L---RSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFM 285 (574)
T ss_pred hccccccCCCCEEEEEEeccchHHHHHHHHH-------H---HhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998876 3 67788999999999999999999999999999999999
Q ss_pred HCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCC
Q 011655 306 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFS 385 (480)
Q Consensus 306 d~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~ 385 (480)
|+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++.. .++||||+||+|++++||++
T Consensus 286 d~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~---~G~GSITAlpiV~t~adDis 362 (574)
T PTZ00185 286 NRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPG---KGGGSVTALPIVETLSNDVT 362 (574)
T ss_pred HcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCC---CCCcceEEEEEEEccCCCCC
Confidence 999999999999999999999999999999999999999999999999999998631 13599999999999999999
Q ss_pred ChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 386 DPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 386 dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||||++++|||||||+|||+|+++|+|||||++.|+||++..+ +++.|++++.++|..|++|+|++.+.+.|.|
T Consensus 363 ~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~a------q~~~~k~vAg~lr~~LaqY~El~~fa~fgsd 436 (574)
T PTZ00185 363 AYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSA------QNVAMKAVAGKLKGILAEYRKLAADSVGGSQ 436 (574)
T ss_pred CcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCcc------CCHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999998 8899999999999999999999999998865
No 28
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.4e-94 Score=759.26 Aligned_cols=351 Identities=29% Similarity=0.418 Sum_probs=327.5
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|+|..+++.|||++++++++.+|+|++++||++|++|++||++++|++|++|||||||++|||||+.+.
T Consensus 45 ~~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~-- 122 (440)
T PRK06820 45 LPGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPP-- 122 (440)
T ss_pred ECCCCcCCEEEEecCCeEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCCcEEEechhhcCCEECccCCccCCCCC--
Confidence 368999999999545589999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+. ..
T Consensus 123 -------------~~--~~------------------------------------------------------------- 126 (440)
T PRK06820 123 -------------LT--GQ------------------------------------------------------------- 126 (440)
T ss_pred -------------CC--cc-------------------------------------------------------------
Confidence 10 01
Q ss_pred EECCeEEEEeecccccccCCC-CcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEE
Q 011655 161 EFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVV 239 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~-p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V 239 (480)
+||+..++ ++++|.++++||.||||+||.|+|+++|||++|||++|+|||+|+++|+++.++|++|
T Consensus 127 -------------~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V 193 (440)
T PRK06820 127 -------------WRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMV 193 (440)
T ss_pred -------------cccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEE
Confidence 12332233 3789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccch
Q 011655 240 YVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTS 319 (480)
Q Consensus 240 ~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dslt 319 (480)
|++||||++|+.+|++++ ...+.++|+++|++++|+||.+|++++|+|+|+||||||+|+|||+++||+|
T Consensus 194 ~~~iGergrEv~ef~e~~----------l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dslt 263 (440)
T PRK06820 194 LALIGERGREVREFLEQV----------LTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLT 263 (440)
T ss_pred EEEEccChHHHHHHHHHh----------hccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchh
Confidence 999999999999999873 4567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEE
Q 011655 320 RWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVF 399 (480)
Q Consensus 320 r~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~ 399 (480)
|||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++|+||++|||+|++++|+|||
T Consensus 264 r~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~-------~~GSIT~i~tVl~~gdD~~dpI~d~~~~ilDg~ 336 (440)
T PRK06820 264 RYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS-------DRGSITAFYTVLVEGDDMNEPVADEVRSLLDGH 336 (440)
T ss_pred HHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-------CCcceeEEEEEEccCCCCCCcchhhhccccceE
Confidence 9999999999999999999999999999999999999994 469999999999999999999999999999999
Q ss_pred EEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 400 WGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 400 i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++||++|+.
T Consensus 337 ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~li~~G~y 396 (440)
T PRK06820 337 IVLSRRLAGAGHYPAIDIAASVSRIMPQI------VSAGQLAMAQKLRRMLACYQEIELLVRVGEY 396 (440)
T ss_pred EEECHHHHhCCCCCccCCcccccccchhh------CCHHHHHHHHHHHHHHHhhhHHHHHHHhhCc
Confidence 99999999999999999999999999988 8999999999999999999999999998764
No 29
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2e-94 Score=758.71 Aligned_cols=352 Identities=26% Similarity=0.408 Sum_probs=327.1
Q ss_pred CCCccCCEEEecC--C----cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccc
Q 011655 2 NGAAMYELVRVGH--D----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKT 75 (480)
Q Consensus 2 ~~a~igE~v~v~~--~----~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~ 75 (480)
+.+++||+|+|.. + .+.|||++|+++.+.+|+|++++||++|+.|++||++++||+|++|||||+|++|+|||+
T Consensus 44 ~~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~ 123 (451)
T PRK05688 44 LRAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDG 123 (451)
T ss_pred CCCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEecccccCCEEeccCceecC
Confidence 4689999999942 2 489999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccc
Q 011655 76 IAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKD 155 (480)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~ 155 (480)
.+. ++..
T Consensus 124 ~~~---------------~~~~---------------------------------------------------------- 130 (451)
T PRK05688 124 KGP---------------MKAE---------------------------------------------------------- 130 (451)
T ss_pred CCC---------------CCcc----------------------------------------------------------
Confidence 531 1100
Q ss_pred eEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 156 TVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 156 ~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++||+..++| +++|.++++||+||||+||.|+|+++|||++|||++|+|||||+.+|+++.+
T Consensus 131 -----------------~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 131 -----------------DWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred -----------------ceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 1234444443 7899999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeee
Q 011655 235 SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMM 314 (480)
Q Consensus 235 ~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll 314 (480)
++++|+++||+|++|+++|++.+ .+.+.++|+|+|++|+|+||.+|++++++|+++||||||+|+||||+
T Consensus 194 ~dv~V~g~Ig~rg~ev~~~~~~~----------~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~ 263 (451)
T PRK05688 194 ADIIVVGLIGERGREVKEFIEHI----------LGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLL 263 (451)
T ss_pred CCEEEEEEeCcCcHhHHHHHHHH----------hhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 99999999999999999999873 56788999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhc
Q 011655 315 ADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLS 394 (480)
Q Consensus 315 ~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~ 394 (480)
+||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+ .++||||+||||++|+||++|||||++++
T Consensus 264 ~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~-----~~~GSITai~tVl~~gdD~~dpI~d~~~s 338 (451)
T PRK05688 264 MDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAE-----PGGGSITAFYTVLSEGDDQQDPIADSARG 338 (451)
T ss_pred ecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCC-----CCCceeeEEEEEEecCCCCCCchHHHHHh
Confidence 9999999999999999999999999999999999999999999863 13799999999999999999999999999
Q ss_pred eecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 395 IVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 395 i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|++++||+++|.
T Consensus 339 ilDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~la~y~~~~dli~~g~ 402 (451)
T PRK05688 339 VLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQV------VDPEHLRRAQRFKQLWSRYQQSRDLISVGA 402 (451)
T ss_pred hccEEEEEcHHHHhCCCCCccCCccccCccchhh------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998 899999999999999999999999999763
No 30
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.3e-94 Score=757.09 Aligned_cols=350 Identities=30% Similarity=0.455 Sum_probs=325.8
Q ss_pred CCCccCCEEEec--CCc--EEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVG--HDN--LIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~--~~~--l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+++++||+|+|. ++. +.|||++|+++++.+|+|++|+||++|++|.+||++++||+|++|||||||++|||||+.+
T Consensus 41 ~~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~v~vg~~lLGrV~d~~G~piD~~~ 120 (441)
T PRK09099 41 LDVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGG 120 (441)
T ss_pred cCCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCCCEEEeCCCccEEEeccccccCEEcccCCccCCCC
Confidence 468999999993 233 7999999999999999999999999999999999999999999999999999999999842
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
+++..
T Consensus 121 ---------------~~~~~------------------------------------------------------------ 125 (441)
T PRK09099 121 ---------------PLDCD------------------------------------------------------------ 125 (441)
T ss_pred ---------------CCccc------------------------------------------------------------
Confidence 11110
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
++||+..++| +++|.++++||.||+++||.++|+++||+++|||++|+|||+|+++|+++..+|
T Consensus 126 ---------------~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d 190 (441)
T PRK09099 126 ---------------ELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD 190 (441)
T ss_pred ---------------cccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 1245544444 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecc
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 316 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~D 316 (480)
+.+|++||||++|+++|++.+ .+.+.++|+++|++|+|+||.+|++++|+|+|+||||||+|+|||+++|
T Consensus 191 ~~vi~~iGer~~ev~ef~~~~----------~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~D 260 (441)
T PRK09099 191 VNVIALIGERGREVREFIELI----------LGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMD 260 (441)
T ss_pred eEEEEEEccChHHHHHHHHHH----------hhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 999999999999999999873 4567899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
|+||||+|+||||+++||||+++||||++|+.|++||||||.. ++||||+||||++++||++|||||++++|+
T Consensus 261 slTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~-------~~GSIT~i~tVl~~~dd~~dpI~d~~~~i~ 333 (441)
T PRK09099 261 SLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG-------ETGSITALYTVLAEDESGSDPIAEEVRGIL 333 (441)
T ss_pred chhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC-------CCcchheeEEEEecCCCcCCcchhhhheec
Confidence 9999999999999999999999999999999999999999963 579999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++++++|+
T Consensus 334 DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~lr~~la~y~e~e~li~iG~ 395 (441)
T PRK09099 334 DGHMILSREIAARNQYPAIDVLGSLSRVMPQV------VPREHVQAAGRLRQLLAKHREVETLLQVGE 395 (441)
T ss_pred ceEEEEcHHHHhCCCCCccCCccccCccchhc------CCHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999998 889999999999999999999999999863
No 31
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=9e-94 Score=749.98 Aligned_cols=351 Identities=29% Similarity=0.469 Sum_probs=329.3
Q ss_pred CCCccCCEEEec--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~--~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+++++||+|+|. ++ .+.|||++++++.+.+++|++|+||++|+.|++||++++||+|++|||||||++|||||+.+
T Consensus 16 ~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGrVid~~G~pld~~~- 94 (411)
T TIGR03496 16 LRAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKG- 94 (411)
T ss_pred CCCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhcCCEECCCCCCcCCCC-
Confidence 368999999995 23 47999999999999999999999999999999999999999999999999999999999742
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
++..
T Consensus 95 --------------~~~~-------------------------------------------------------------- 98 (411)
T TIGR03496 95 --------------PLDA-------------------------------------------------------------- 98 (411)
T ss_pred --------------CCCc--------------------------------------------------------------
Confidence 1100
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
.++||+..++| +++|.++++++.||+++||.++|+++||+++|||++|+|||+|+++|+++.++|+
T Consensus 99 -------------~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~ 165 (411)
T TIGR03496 99 -------------GERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADV 165 (411)
T ss_pred -------------ccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 12467766555 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
.+|++||||++|+.+|++++ .+.+.|+||++|++|+|+||.+|++++|+|+|+||||||+|+||||++||
T Consensus 166 ~vi~~iGer~~ev~e~~~~~----------~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Ds 235 (411)
T TIGR03496 166 VVVGLIGERGREVKEFIEDI----------LGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDS 235 (411)
T ss_pred EEEEEEecChHHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 99999999999999999873 56788999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.|++||||||+++ +++||||+|+||++|+||++|||+|++++|+|
T Consensus 236 ltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~-----~~~GSIT~~~tv~~~~dd~~dpi~~~~~~i~d 310 (411)
T TIGR03496 236 LTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGE-----EGKGSITAFYTVLVEGDDQQDPIADAARAILD 310 (411)
T ss_pred hHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccC-----CCCcceeEEEEEEccCCCCCCcchhhhccccc
Confidence 9999999999999999999999999999999999999999974 25799999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcC
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVG 463 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G 463 (480)
|||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|+++++++|
T Consensus 311 g~ivLsr~la~~g~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~l~~~g 370 (411)
T TIGR03496 311 GHIVLSRELAEQGHYPAIDILASISRVMPDV------VSPEHRQAARRFKQLLSRYQENRDLISIG 370 (411)
T ss_pred EEEEEchhHHhCCCCCccCCCcccccchhhh------CCHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 9999999999999999999999999999988 89999999999999999999999999976
No 32
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1e-93 Score=750.10 Aligned_cols=351 Identities=30% Similarity=0.484 Sum_probs=326.2
Q ss_pred ccCCEEEecC--C-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 5 AMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 5 ~igE~v~v~~--~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
++||+|+|.. + .+.|||++++++.+.+++|++|+||++|+.|++||++++||+|++|||||||++|||||+.++
T Consensus 21 ~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~lLGRViD~lG~plD~~~~--- 97 (418)
T TIGR03498 21 RLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGP--- 97 (418)
T ss_pred CCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhhcCCEECCCCCccCCCCC---
Confidence 8999999953 3 489999999999999999999999999999999999999999999999999999999998421
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+...
T Consensus 98 ------------~~~~---------------------------------------------------------------- 101 (418)
T TIGR03498 98 ------------LPQG---------------------------------------------------------------- 101 (418)
T ss_pred ------------CCCC----------------------------------------------------------------
Confidence 1000
Q ss_pred ECCeEEEEeecccccccC-CCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~-~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
..+||+.. ++++++|.++++||.||+++||.++|+++|||++|||++|+|||+|+.+|+++.+++..+|
T Consensus 102 ----------~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi 171 (418)
T TIGR03498 102 ----------ERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVI 171 (418)
T ss_pred ----------cceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 01367764 4448999999999999999999999999999999999999999999999999988999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
+++|||++|+++|++++ .+++.|+|||+|++|+|+||.+|++++|+|+++||||||+|+|||+++||+||
T Consensus 172 ~~iGer~~ev~~~~~~~----------l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 172 ALVGERGREVREFLEDD----------LGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred EEEeeechHHHHHHHHh----------hhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 99999999999999862 34456999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||+++||||+++||||++|+.|++|+||||+.. +++||||+||||++|+||++|||||++++||||||
T Consensus 242 ~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~-----~~~GSIT~~~tVl~~gdd~~dpi~d~~~si~DG~i 316 (418)
T TIGR03498 242 FAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGA-----EGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHI 316 (418)
T ss_pred HHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCC-----CCCcceeeeEEEeccCCCCCCcchhhhheeeeeEE
Confidence 9999999999999999999999999999999999999852 25799999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+++++++++|..
T Consensus 317 vLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y 375 (418)
T TIGR03498 317 VLDRAIAERGRYPAINVLASVSRLAPRV------WSPEERKLVRRLRALLARYEETEDLIRLGAY 375 (418)
T ss_pred EECHHHHhCCCCCccCCcccccccchhh------cCHHHHHHHHHHHHHHHhhHHHHHHHHhhCC
Confidence 9999999999999999999999999988 8999999999999999999999999998863
No 33
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=1.4e-93 Score=750.29 Aligned_cols=349 Identities=28% Similarity=0.451 Sum_probs=326.3
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|+|..+++.|||++++++.+.+|+|++|+||++|+.|.+||++++|++|++|||||||++|||||+.+..
T Consensus 38 ~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGrVid~~G~pld~~~~~-- 115 (433)
T PRK07594 38 PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-- 115 (433)
T ss_pred CCcCCCCEEEEecCCeEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEeChhhccCEEcccCCCcCCCCCC--
Confidence 689999999995456899999999999999999999999999999999999999999999999999999999985310
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
. ..|
T Consensus 116 -------------~--~~~------------------------------------------------------------- 119 (433)
T PRK07594 116 -------------D--VCW------------------------------------------------------------- 119 (433)
T ss_pred -------------c--ccc-------------------------------------------------------------
Confidence 0 011
Q ss_pred ECCeEEEEeecccccccC-CCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~-~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
||+.. ++++++|..+++|+.||+++||.++|+++|||++|||++|+|||||+++|+++.++|.+||
T Consensus 120 -------------~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi 186 (433)
T PRK07594 120 -------------KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL 186 (433)
T ss_pred -------------cccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE
Confidence 22322 2347899999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
++||||++|+++|++++ .+.+.++|+++|++++|+|+.+|++++|+|+|+||||||+|+||||++||+||
T Consensus 187 ~~iGeRgrEv~efl~~~----------~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 187 VLIGERGREVREFIDFT----------LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred EEECCCchHHHHHHHHh----------hccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 99999999999999873 34577899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||+++||||+++||||++|+.|++|+||||.. ++||||+||||++|+||++|||||++++|+||||
T Consensus 257 ~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~-------~~GSIT~~~tVl~~gdD~~dpi~d~~~~ilDG~I 329 (433)
T PRK07594 257 YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI 329 (433)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC-------CCcchheeeeeeecCCCCCCchHHHhhhhcceEE
Confidence 999999999999999999999999999999999999962 5799999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++||++|+
T Consensus 330 vLsr~la~~g~yPAIDvl~S~SR~~~~~------~~~~h~~~a~~~r~~la~y~e~e~li~~G~ 387 (433)
T PRK07594 330 VLSRRLAERGHYPAIDVLATLSRVFPVV------TSHEHRQLAAILRRCLALYQEVELLIRIGE 387 (433)
T ss_pred EEcHHHHhCCCCCccCCcccccccchhh------CCHHHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence 9999999999999999999999999998 899999999999999999999999999987
No 34
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3.1e-93 Score=746.31 Aligned_cols=349 Identities=28% Similarity=0.463 Sum_probs=326.7
Q ss_pred CCCccCCEEEec---CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~---~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+++.+||+|+|. +..+.|||+++.++.+.+++|++|+||++|+.|.+||++++||+|++|||||||++|+|||+.++
T Consensus 16 ~~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lLGRVid~~G~plD~~~~ 95 (413)
T TIGR03497 16 PKAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGP 95 (413)
T ss_pred CCCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhcCCEEcCCCCcccCCCC
Confidence 468999999993 44589999999999999999999999999999999999999999999999999999999997421
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
+.
T Consensus 96 ---------------~~--------------------------------------------------------------- 97 (413)
T TIGR03497 96 ---------------II--------------------------------------------------------------- 97 (413)
T ss_pred ---------------CC---------------------------------------------------------------
Confidence 10
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
..++||++.++| +++|.++++++.||+|+||.++|+++|||++|||++|+|||+|+++|+++.++++
T Consensus 98 ------------~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~ 165 (413)
T TIGR03497 98 ------------GEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADI 165 (413)
T ss_pred ------------CCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence 013577776665 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
.+++++|||++|+++|+++. .++..++|+++|++|+|+||.+|++++++|+|+||||||+|+||||++||
T Consensus 166 gvi~~~Ger~~ev~e~~~~~----------l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Ds 235 (413)
T TIGR03497 166 NVIALIGERGREVRDFIEKD----------LGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDS 235 (413)
T ss_pred EEEEEEccchHHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 99999999999999999862 23455999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++|+||++|||+|++++|+|
T Consensus 236 ltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~-------~~GSIT~~~tVl~~gdD~~dpi~~~~~si~d 308 (413)
T TIGR03497 236 VTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS-------QKGSITGFYTVLVDGDDMNEPIADAVRGILD 308 (413)
T ss_pred cHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCC-------CCcceeEEEEEEccCCCCCCcchhhcccccc
Confidence 999999999999999999999999999999999999999982 5799999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcC
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVG 463 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G 463 (480)
|||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+++++++++|
T Consensus 309 g~ivLsr~la~~g~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~li~~g 368 (413)
T TIGR03497 309 GHIVLSRELAAKNHYPAIDVLASVSRVMNEI------VSEEHKELAGKLRELLAVYKEAEDLINIG 368 (413)
T ss_pred EEEEECHHHHhCCCCCccCCccccccCcccc------CCHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 9999999999999999999999999999988 89999999999999999999999999974
No 35
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.5e-92 Score=741.57 Aligned_cols=355 Identities=28% Similarity=0.435 Sum_probs=328.3
Q ss_pred CCCccCCEEEec----CCcEE--EEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccc
Q 011655 2 NGAAMYELVRVG----HDNLI--GEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKT 75 (480)
Q Consensus 2 ~~a~igE~v~v~----~~~l~--gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~ 75 (480)
+++++||+|+|. ++.+. |||++++++++.+|+|++|.||++|++|.+||++++|++|++|||||+|++|||+|+
T Consensus 23 ~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G~piD~ 102 (428)
T PRK08149 23 PDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVER 102 (428)
T ss_pred CCCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEEEeChhhcCCeeCCCCCCcCC
Confidence 689999999993 23355 999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccc
Q 011655 76 IAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKD 155 (480)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~ 155 (480)
.+. ++... | +
T Consensus 103 ~~~-------------~~~~~---------------------------------~-----~------------------- 112 (428)
T PRK08149 103 FDA-------------PPTVG---------------------------------P-----I------------------- 112 (428)
T ss_pred CCC-------------Ccccc---------------------------------c-----c-------------------
Confidence 520 00000 0 0
Q ss_pred eEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 156 TVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 156 ~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
..+||+..++| +++|.++++||.||+++||.++|+++|||++|||++|+|||||+.+|+++.+
T Consensus 113 ----------------~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 113 ----------------SEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred ----------------cceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 12456655544 7899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeee
Q 011655 235 SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMM 314 (480)
Q Consensus 235 ~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll 314 (480)
+|++|+++||+|++|+++|++++ ...+.++|+++|++++|+||.+|++++|+|+++||||||+|+||||+
T Consensus 177 ~dv~v~g~Ig~rg~ev~e~~~~~----------l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~ 246 (428)
T PRK08149 177 ADVFVIGLIGERGREVTEFVESL----------RASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLF 246 (428)
T ss_pred CCeEEEEEEeeCCccHHHHHHHH----------hhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999873 45678899999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhc
Q 011655 315 ADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLS 394 (480)
Q Consensus 315 ~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~ 394 (480)
+||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+||++|||+|++++
T Consensus 247 ~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~-------~~GSIT~~~tVl~~~dD~~dpi~d~~~~ 319 (428)
T PRK08149 247 IDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT-------LAGSITAFYTVLLESEEEPDPIGDEIRS 319 (428)
T ss_pred ccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC-------CCCCceEEEEEEecCCCCCCCchhhhhe
Confidence 999999999999999999999999999999999999999999996 4699999999999999999999999999
Q ss_pred eecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 395 IVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 395 i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++||++|+.
T Consensus 320 ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y 384 (428)
T PRK08149 320 ILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQV------TDPKHRQLAAAFRKLLTRLEELQLFIDLGEY 384 (428)
T ss_pred eccEEEEEcHHHHhCCCCCcccCccccccchhhh------cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999988 8999999999999999999999999999974
No 36
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.5e-92 Score=742.82 Aligned_cols=350 Identities=24% Similarity=0.381 Sum_probs=325.2
Q ss_pred CCCccCCEEEecC----CcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVGH----DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~~----~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+.+++||+|+|+. ..+.|||++++++++.+|+|++|+||++|++|++||++++||+|++|||||||++|||||+.+
T Consensus 35 ~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRViD~~G~plD~~g 114 (434)
T PRK08472 35 LNPSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKG 114 (434)
T ss_pred cCCCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceEEEcChhhcCCEECCCCCcccCCC
Confidence 3589999999953 248999999999999999999999999999999999999999999999999999999999853
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
. +..
T Consensus 115 ~---------------~~~------------------------------------------------------------- 118 (434)
T PRK08472 115 A---------------IDY------------------------------------------------------------- 118 (434)
T ss_pred C---------------CCc-------------------------------------------------------------
Confidence 1 100
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.++||+..++| +++|.++++++.||+++||.++|+++||+++|+|++|+|||||+.+|+++.+++
T Consensus 119 --------------~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~ 184 (434)
T PRK08472 119 --------------ERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAP 184 (434)
T ss_pred --------------ccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 01345544444 799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecc
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 316 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~D 316 (480)
++||+++|+|++|+++|++.. .+ +.++++++|++|+|+||++|++++++|+++||||||+|+||||++|
T Consensus 185 v~vi~~iGergrev~e~~~~~----------l~-~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~D 253 (434)
T PRK08472 185 IKVVALIGERGREIPEFIEKN----------LG-GDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMD 253 (434)
T ss_pred EEEEEeeCccchhHHHHHHHH----------hc-CcccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 999999999999999998751 22 3389999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
|+||||+|+||||+++||||+++||||++|+.|++||||||+.+ ++||||+||||++|+||++|||+|++++|+
T Consensus 254 slTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~------g~GSIT~~~tVlv~gdD~~dpi~d~~~~i~ 327 (434)
T PRK08472 254 SVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE------GKGSITAFFTVLVEGDDMSDPIADQSRSIL 327 (434)
T ss_pred cchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC------CCceeeEeEEEEecCCCCCCCchHHhhhhc
Confidence 99999999999999999999999999999999999999999963 479999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++||++|+
T Consensus 328 Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~e~li~~G~ 389 (434)
T PRK08472 328 DGHIVLSRELTDFGIYPPINILNSASRVMNDI------ISPEHKLAARKFKRLYSLLKENEVLIRIGA 389 (434)
T ss_pred ceEEEEcHHHHhCCCCCccCCccccCccchhc------CCHHHHHHHHHHHHHHHhchhHHHHHHhhC
Confidence 99999999999999999999999999999998 899999999999999999999999999876
No 37
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.9e-92 Score=742.29 Aligned_cols=352 Identities=26% Similarity=0.388 Sum_probs=328.0
Q ss_pred CCCccCCEEEe-c-CC----cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEc-------CCccEEecCcccccccccc
Q 011655 2 NGAAMYELVRV-G-HD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT-------HKPLSVELGPGILGNIFDG 68 (480)
Q Consensus 2 ~~a~igE~v~v-~-~~----~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~t-------g~~lsV~lG~gLLGrV~Dg 68 (480)
+.+++||+|.| . ++ .+.+|||+|+++.+.+|+|++++||++|+.|++| |++++||+|++|||||+|+
T Consensus 44 ~~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~~~~~~~~v~vg~~llGRvid~ 123 (455)
T PRK07960 44 LQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDG 123 (455)
T ss_pred CCCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCCCEEEECCcccccCCCceEEECCcccccCEECC
Confidence 57899999999 2 22 3789999999999999999999999999999999 9999999999999999999
Q ss_pred ccCccccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCC
Q 011655 69 IQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPA 148 (480)
Q Consensus 69 lGrPLd~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~ 148 (480)
+|+|||+.+. +..
T Consensus 124 ~G~piDg~~~---------------~~~---------------------------------------------------- 136 (455)
T PRK07960 124 SGKPLDGLPA---------------PDT---------------------------------------------------- 136 (455)
T ss_pred CccccCCCCC---------------CCC----------------------------------------------------
Confidence 9999998531 100
Q ss_pred CCccccceEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHH
Q 011655 149 GQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQ 227 (480)
Q Consensus 149 g~~~~~~~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~ 227 (480)
.++||+..++| +++|.++++||+||||+||+|+|+++||+++|||++|+|||||++
T Consensus 137 -----------------------~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~ 193 (455)
T PRK07960 137 -----------------------GETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLG 193 (455)
T ss_pred -----------------------CccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEEECCCCCCccHHHH
Confidence 02356655555 789999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q 011655 228 ALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM 307 (480)
Q Consensus 228 ~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~ 307 (480)
+|+++.+++++|+++||+|++|+.+|++++ .+.+.+++++||++++|+||.+|++++++|+|+||||||+
T Consensus 194 ~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~----------~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~ 263 (455)
T PRK07960 194 MMARYTQADVIVVGLIGERGREVKDFIENI----------LGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR 263 (455)
T ss_pred HHhCCCCCCEEEEEEEEECCeEHHHHHHhh----------cCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999873 5667799999999999999999999999999999999999
Q ss_pred CCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCCh
Q 011655 308 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDP 387 (480)
Q Consensus 308 G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dp 387 (480)
|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+.. +++||||+|++|++|+||++||
T Consensus 264 G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~-----~~~GSIT~i~tVlv~~dD~~dp 338 (455)
T PRK07960 264 GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI-----SGGGSITAFYTVLTEGDDQQDP 338 (455)
T ss_pred CCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCC-----CCCeeeeeEEEEEEcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999963 2569999999999999999999
Q ss_pred hhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 388 VTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 388 v~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++.+.++|++|+.|++++|||++|+
T Consensus 339 i~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~------~~~~~~~~~~~~r~~l~~Y~~~~dli~ig~ 409 (455)
T PRK07960 339 IADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL------IDEQHYARVRQFKQLLSSFQRNRDLVSVGA 409 (455)
T ss_pred hHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCcccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998 899999999999999999999999999764
No 38
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=3.7e-92 Score=739.21 Aligned_cols=349 Identities=25% Similarity=0.334 Sum_probs=322.4
Q ss_pred CCCccCCEEEecC---CcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVGH---DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~~---~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+.+++||+|+|.. +.+.|||++++++++.+|+|++|+||++|++|.+||++++|++|++|||||+|++|||||+.+
T Consensus 36 ~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg~~llGrv~d~~G~pld~~~- 114 (434)
T PRK05922 36 LSACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKE- 114 (434)
T ss_pred CCCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcChhhcCCEeCCCCCccCCCC-
Confidence 3578999999952 348999999999999999999999999999999999999999999999999999999999753
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
+++ .|
T Consensus 115 --------------~~~---~~---------------------------------------------------------- 119 (434)
T PRK05922 115 --------------QLP---KT---------------------------------------------------------- 119 (434)
T ss_pred --------------CCC---cc----------------------------------------------------------
Confidence 111 11
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
+.||+..++| +++|.++++||.||||+||.|+|+++|||++|||++|+|||||+.+|+++.++++
T Consensus 120 --------------~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~ 185 (434)
T PRK05922 120 --------------HLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTI 185 (434)
T ss_pred --------------ceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCc
Confidence 1234443333 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
++|++||+|++|+.+|++++ .+...+++|++|++|+|+||.+|++++++|+|+||||||+|+||||++||
T Consensus 186 gvi~liGerg~ev~eyl~q~----------~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Ds 255 (434)
T PRK05922 186 NVIALIGERGREVREYIEQH----------KEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDS 255 (434)
T ss_pred eEEEEeCCCCchHHHHHHHH----------HhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 99999999999999999863 34456789999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++|||||+|+.|++||||||+. ++||||+||+|++++| ..|||+|++++|||
T Consensus 256 lTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~-------~~GSIT~~~tVl~~~~-~~dpi~d~~rsilD 327 (434)
T PRK05922 256 LSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN-------DKGSITALYAILHYPN-HPDIFTDYLKSLLD 327 (434)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC-------CCcceeEEEEEEecCC-CCCccccchhhhcC
Confidence 999999999999999999999999999999999999999983 4699999999999998 78999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||+++ |||||++.|+||+|+.+ ++++|++++.++|++|++|+|++|+|++|.-
T Consensus 328 GhIvLsr~la~~~-~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~edli~~G~y 388 (434)
T PRK05922 328 GHFFLTPQGKALA-SPPIDILTSLSRSARQL------ALPHHYAAAEELRSLLKAYHEALDIIQLGAY 388 (434)
T ss_pred cEEEEcHHHHhCC-CCCcCCccccccCCccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999987 99999999999999998 8999999999999999999999999998864
No 39
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=3.1e-90 Score=726.44 Aligned_cols=352 Identities=32% Similarity=0.501 Sum_probs=329.1
Q ss_pred CCCccCCEEEec---CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~---~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+++.+||+|+|. ++.+.|||++++++.+.+|+|++|+||++|++|++||++++||+|++|||||||++|||||+.++
T Consensus 22 ~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrViD~~G~plD~~~~ 101 (422)
T TIGR02546 22 PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGE 101 (422)
T ss_pred CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeChhhccCEeCCCCCcccCCCC
Confidence 578999999995 33599999999999999999999999999999999999999999999999999999999998531
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
+... +
T Consensus 102 ---------------~~~~--------------------------------~---------------------------- 106 (422)
T TIGR02546 102 ---------------LPAG--------------------------------E---------------------------- 106 (422)
T ss_pred ---------------CCCC--------------------------------C----------------------------
Confidence 1000 0
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
.++||++.++| +++|.++++||.||+++||.++|+++|||++|+|++|+|||+|+++|+++.+++.
T Consensus 107 -------------~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~ 173 (422)
T TIGR02546 107 -------------IETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 173 (422)
T ss_pred -------------ceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 02578865555 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
++|++||+|++|+.+|++++ .+.+.++++++|++++|+|+.+|++++++|+++|||||++|+|||+++||
T Consensus 174 ~vi~~iG~~~~ev~~~~~~~----------~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Ds 243 (422)
T TIGR02546 174 NVIALIGERGREVREFIEHH----------LGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDS 243 (422)
T ss_pred EEEEEEccCCcCHHHHHHHH----------hccccccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 99999999999999999862 45677999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++|||+++|+.|++||||||+. ++||||+|+||++++||++|||+|++++|+|
T Consensus 244 ltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~-------~~GSIT~~~tv~~~~dd~~~pi~~~~~~i~d 316 (422)
T TIGR02546 244 LTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG-------EKGSITALYTVLVEGDDMNDPIADEVRSILD 316 (422)
T ss_pred chHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCC-------CCCceeEEEEEeccCCCCCCCchhhhhcccc
Confidence 999999999999999999999999999999999999999983 5799999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|+++|+++|+
T Consensus 317 g~i~Lsr~la~~g~yPAId~~~S~SR~~~~~------~~~~~~~~a~~~~~~l~~y~e~~~li~~g~ 377 (422)
T TIGR02546 317 GHIVLSRALAERNHYPAIDVLASLSRVMSQV------VSTEHRRAAGKLRRLLATYKEVELLIRLGE 377 (422)
T ss_pred EEEEEcHHHHhCCCCCccCCccccccchhhh------CCHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 9999999999999999999999999999988 899999999999999999999999999854
No 40
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.1e-90 Score=725.25 Aligned_cols=351 Identities=23% Similarity=0.366 Sum_probs=323.2
Q ss_pred CCCccCCEEEe-c-CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRV-G-HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v-~-~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+.+++||+|+| . ++ .+.||||+|+++++.+|+|++|+||++|++|.+||++++||+|++|||||+|++|+|||+.+.
T Consensus 34 ~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~ 113 (434)
T PRK07196 34 CRLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQ 113 (434)
T ss_pred CCCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCCCEEEECCCccEEEcCccccCCeeCcCCCCcCCCCC
Confidence 57899999999 2 23 489999999999999999999999999999999999999999999999999999999998531
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
+..+
T Consensus 114 ---------------~~~~------------------------------------------------------------- 117 (434)
T PRK07196 114 ---------------LGGS------------------------------------------------------------- 117 (434)
T ss_pred ---------------CCCC-------------------------------------------------------------
Confidence 1000
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
.+||+..++| +++|.++++||+||+++||.++|+++||+++|||++|+|||||+.+|+++.++|+
T Consensus 118 --------------~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 118 --------------TPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred --------------ceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 0123322223 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
+|+++||+|++|+.+|.++. ..+..+.|++++++++|+|+.+|+.++++++++||||+++|+||||++||
T Consensus 184 ~vig~IGerg~ev~ef~~~~----------l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Ds 253 (434)
T PRK07196 184 VVVGLIGERGREVKEFIEHS----------LQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDS 253 (434)
T ss_pred EEEEEEeeecHHHHHHHHHH----------hhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecc
Confidence 99999999999999999762 23344889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.|++|+||||+.+ ++||||+||||++|+||++|||||++++|+|
T Consensus 254 ltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~------~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilD 327 (434)
T PRK07196 254 LTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS------GNGTMTAIYTVLAEGDDQQDPIVDCARAVLD 327 (434)
T ss_pred hhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCC------CCEEeeeeeEEEccCCCCCCchhHhhhhhcc
Confidence 9999999999999999999999999999999999999999963 4699999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++|+++|.
T Consensus 328 G~ivLsr~la~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~~a~y~e~~~li~~g~ 388 (434)
T PRK07196 328 GHIVLSRKLAEAGHYPAIDISQSISRCMSQV------IGSQQAKAASLLKQCYADYMAIKPLIPLGG 388 (434)
T ss_pred eEEEEcHHHHhCCCCCccCCccccCccchhc------cCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998 899999999999999999999999999763
No 41
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=6.8e-89 Score=718.53 Aligned_cols=352 Identities=30% Similarity=0.446 Sum_probs=326.2
Q ss_pred CCCccCCEEEec----CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVG----HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~----~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
+.+.+||+|+|. ++.+.|||++++++++.+|+|++|+||++|++|++||++++||+|++|||||||++|||||+.+
T Consensus 40 ~~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~ 119 (440)
T TIGR01026 40 PQASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKG 119 (440)
T ss_pred CCCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCCCEEEeCCCccEEEcChhhhhceecCCCcccCCCC
Confidence 568999999995 2339999999999999999999999999999999999999999999999999999999999853
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
. ++..
T Consensus 120 ~--------------~~~~------------------------------------------------------------- 124 (440)
T TIGR01026 120 K--------------FLDN------------------------------------------------------------- 124 (440)
T ss_pred C--------------CCCC-------------------------------------------------------------
Confidence 1 0000
Q ss_pred EEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.++||+..++| +++|.++++|+.||+++||.++|+++|||++|+|++|+|||+|+.+|+++.+++
T Consensus 125 --------------~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 125 --------------VETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred --------------ccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 01345544444 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecc
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 316 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~D 316 (480)
+.+|+++|+|++|+.+|+++. .+.+.++||++|++++|+||.+|++++++|+++||||||+|+||||++|
T Consensus 191 ~~vi~~iG~r~~ev~~~~~~~----------~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~D 260 (440)
T TIGR01026 191 VNVIALIGERGREVREFIEHD----------LGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMD 260 (440)
T ss_pred EEEEEEEeecchHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999762 4556799999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
|+||||+|+||||+++||||+++||||++|+.+++|+||||. .++||||+|+||+++++|++|||+|++++|+
T Consensus 261 slTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~-------~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~ 333 (440)
T TIGR01026 261 SVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA-------SGKGSITAFYTVLVEGDDMNEPIADSVRGIL 333 (440)
T ss_pred ChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc-------CCCCeeeEEEEEEccCcCCCcchhhhhcccc
Confidence 999999999999999999999999999999999999999996 2569999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++|+++|+.
T Consensus 334 dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~li~ig~y 396 (440)
T TIGR01026 334 DGHIVLSRALAQRGHYPAIDVLASISRLMTAI------VSEEHRRAARKFRELLSKYKDNEDLIRIGAY 396 (440)
T ss_pred ceEEEEecchhhCCccCccCCCcccccCcccc------CCHHHHHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 99999999999999999999999999999988 8999999999999999999999999998754
No 42
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.7e-88 Score=711.50 Aligned_cols=350 Identities=28% Similarity=0.441 Sum_probs=321.2
Q ss_pred CCccCCEEEecC--CcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 3 GAAMYELVRVGH--DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 3 ~a~igE~v~v~~--~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++||+|+|.. +.+.|||++|+++.+.+++|+++.||++|++|.. ++++++++|++|||||+|++|+|||+.+.
T Consensus 46 ~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~-- 122 (450)
T PRK06002 46 FVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGP-- 122 (450)
T ss_pred CCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccCCcCCCCCCEEEe-CCCceeecCcccccCEECCCCcCCCCCCC--
Confidence 799999999942 2489999999999999999999999999999999 67999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+...
T Consensus 123 -------------~~~~--------------------------------------------------------------- 126 (450)
T PRK06002 123 -------------LAPG--------------------------------------------------------------- 126 (450)
T ss_pred -------------CCCC---------------------------------------------------------------
Confidence 1100
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEE
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVV 239 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V 239 (480)
..+||+..++| +++|..+++++.||+++||.++||++|||++|||++|+|||||+.+|++..+++..+
T Consensus 127 -----------~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gv 195 (450)
T PRK06002 127 -----------TRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVV 195 (450)
T ss_pred -----------cceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeee
Confidence 00245544444 889999999999999999999999999999999999999999999999988889999
Q ss_pred EEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccch
Q 011655 240 YVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTS 319 (480)
Q Consensus 240 ~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dslt 319 (480)
|+++|||++|+.+|.++. .. ..++|+++|++++|+||.+|++++|+|+++||||||+|+|||+++||+|
T Consensus 196 v~liGergrev~e~~~~~----------l~-~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 196 IALVGERGREVREFLEDT----------LA-DNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred eeecccCCccHHHHhHHH----------HH-HhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchH
Confidence 999999999999998752 12 2378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEE
Q 011655 320 RWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVF 399 (480)
Q Consensus 320 r~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~ 399 (480)
|||+|+||||+++||||+++||||++|+.|++|+||||+.. +++||||+||||++|+||++|||||++++|+|||
T Consensus 265 r~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~-----~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ 339 (450)
T PRK06002 265 RFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGA-----EGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGH 339 (450)
T ss_pred HHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCC-----CCCeeeeEEEEEEecCCCCCCccHHHHHhhcceE
Confidence 99999999999999999999999999999999999999852 3579999999999999999999999999999999
Q ss_pred EEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 400 WGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 400 i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++||++|.
T Consensus 340 ivLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a~~~r~~la~y~e~e~li~ig~ 398 (450)
T PRK06002 340 IVLDRAIAEQGRYPAVDPLASISRLARHA------WTPEQRKLVSRLKSMIARFEETRDLRLIGG 398 (450)
T ss_pred EEEcHHHHhCCCCCccCCccccCcccccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999998 889999999999999999999999997654
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-85 Score=690.16 Aligned_cols=352 Identities=24% Similarity=0.361 Sum_probs=325.5
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|+|.++.+.|||++++++.+.+++|++++||++|+.|.+||++++||+|++|||||+|++|+|+|+.+...
T Consensus 38 ~~~~ige~~~i~~~~~~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg~~~lGrV~d~~G~piD~~~~~~- 116 (432)
T PRK06793 38 PKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENI- 116 (432)
T ss_pred CCCCcCCEEEECCCCEEEEEEEecCCcEEEEEccCccCCCCCCEEEECCCccEEEcCHhhccCEECcCCccCCCCCCCC-
Confidence 6899999999953458999999999999999999999999999999999999999999999999999999999853100
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
.
T Consensus 117 --------------~----------------------------------------------------------------- 117 (432)
T PRK06793 117 --------------P----------------------------------------------------------------- 117 (432)
T ss_pred --------------C-----------------------------------------------------------------
Confidence 0
Q ss_pred ECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
.++||+..++| +++|..+++++.||+|+||.++|+++|||++|||++|+|||+|+.+|+++.+++..++
T Consensus 118 ----------~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI 187 (432)
T PRK06793 118 ----------LQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI 187 (432)
T ss_pred ----------cccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE
Confidence 01244544444 7899999999999999999999999999999999999999999999999998999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
+++|||++|+++|++.. .++..++|+++|++++|+|+.+|++++++|+++||||||+|+||||++||+||
T Consensus 188 ~~iGerg~ev~e~~~~~----------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 188 SLVGERGREVKDFIRKE----------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred EeCCCCcccHHHHHHHH----------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 99999999999998751 23344999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+|||++++||+|+. |||+++|+.+++|+||||+. ++||||++|+|++|+||++|||+|++++|+||||
T Consensus 258 ~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~-------~~GSiT~~~tvlv~~dD~~dpI~d~~~si~DG~i 329 (432)
T PRK06793 258 FADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT-------QKGSITGIYTVLVDGDDLNGPVPDLARGILDGHI 329 (432)
T ss_pred HHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC-------CCcceEEEEEEEecCCCCCCcchHHhhhhcceEE
Confidence 999999999999999996 99999999999999999995 4699999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCccc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLWS 467 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d~~ 467 (480)
+|||+||++|||||||++.|+||+|+.+ ++++|++++.++|++|++|+++++++++|....
T Consensus 330 vLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~ 390 (432)
T PRK06793 330 VLKRELATLSHYPAISVLDSVSRIMEEI------VSPNHWQLANEMRKILSIYKENELYFKLGTIQE 390 (432)
T ss_pred EEcHHHHhCCCCCccCCCcccCcCcccc------CCHHHHHHHHHHHHHHHhChHHHHHHHhCCccC
Confidence 9999999999999999999999999998 899999999999999999999999999987543
No 44
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=3.2e-86 Score=658.10 Aligned_cols=236 Identities=28% Similarity=0.418 Sum_probs=224.7
Q ss_pred cccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC------CCEEEEEeeCCc
Q 011655 174 AWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVGCGER 246 (480)
Q Consensus 174 ~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~------~dv~V~~~iGer 246 (480)
+||+..++| +++|.+++|||+||||+||+|+|||||||++|||++|+|||+|+.+|++|.+ +|+|||++||||
T Consensus 33 ~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR 112 (276)
T cd01135 33 YLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGIT 112 (276)
T ss_pred eeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccc
Confidence 356655555 8999999999999999999999999999999999999999999999999976 789999999999
Q ss_pred hhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeecccchHHHHHH
Q 011655 247 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEAL 325 (480)
Q Consensus 247 ~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~Dsltr~a~A~ 325 (480)
++|+.||++++ .+.++|+||++|++++|+||.+|++++|+|+|+||||||+ |+|||+++||+||||+|+
T Consensus 113 ~rev~e~~~~~----------~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~ 182 (276)
T cd01135 113 MEDARFFKDDF----------EETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEAL 182 (276)
T ss_pred cHHHHHHHHHh----------hhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHH
Confidence 99999999973 5678999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHH
Q 011655 326 REISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 405 (480)
Q Consensus 326 reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~ 405 (480)
||||+++||||+++||||++|+.|++|+||||+++ .++||||+|++|++++||++|||||+++|||||||+|||+
T Consensus 183 rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~-----~~~GSITa~~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~ 257 (276)
T cd01135 183 REISAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIVLDRQ 257 (276)
T ss_pred HHHHhccCCCCCccCcCccHHHHhhHHheecccCC-----CCCeeEEEEEEEEccCCCcCcchHHHHHhhcceEEEEcHH
Confidence 99999999999999999999999999999999974 1469999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCccccccccc
Q 011655 406 LAQRKHFPSVNWLISYSKY 424 (480)
Q Consensus 406 La~~g~yPAId~l~S~SR~ 424 (480)
||++||||||||+.|+||+
T Consensus 258 la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 258 LHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred HHhCCCCCCcCCcccccCC
Confidence 9999999999999999995
No 45
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.9e-85 Score=686.57 Aligned_cols=350 Identities=28% Similarity=0.450 Sum_probs=323.1
Q ss_pred CCCccCCEEEec---CC--cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccc
Q 011655 2 NGAAMYELVRVG---HD--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTI 76 (480)
Q Consensus 2 ~~a~igE~v~v~---~~--~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~ 76 (480)
+.+++||+|+|. ++ .+.|||++|+++.+.+|+|++|+||++|++|++||++++||+|++|||||||++|+|||+.
T Consensus 35 ~~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~v~vg~~llGRv~d~~G~plD~~ 114 (438)
T PRK07721 35 PESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGS 114 (438)
T ss_pred CCCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEechhhcCCEECcCCCccCCC
Confidence 468999999993 22 4899999999999999999999999999999999999999999999999999999999974
Q ss_pred cccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccce
Q 011655 77 AIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDT 156 (480)
Q Consensus 77 ~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~ 156 (480)
+.. .+
T Consensus 115 ~~~-------~~-------------------------------------------------------------------- 119 (438)
T PRK07721 115 ALP-------KG-------------------------------------------------------------------- 119 (438)
T ss_pred CCC-------Cc--------------------------------------------------------------------
Confidence 200 00
Q ss_pred EEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 157 VLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 157 v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
..+||+..++| +++|.++++||.||+++||.++|+++||+++|+|++|+|||+|+++|+++.++
T Consensus 120 ---------------~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~ 184 (438)
T PRK07721 120 ---------------LAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA 184 (438)
T ss_pred ---------------cccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 01234433334 78999999999999999999999999999999999999999999999999989
Q ss_pred CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeec
Q 011655 236 DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMA 315 (480)
Q Consensus 236 dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~ 315 (480)
+..+++++|||++|+.+|+++. .+...++|+++|++|+|+|+.+|++++|+|+|+||||||+|+||||++
T Consensus 185 ~~gvI~~~Gerg~ev~e~~~~~----------l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~ 254 (438)
T PRK07721 185 DLNVIALIGERGREVREFIERD----------LGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMM 254 (438)
T ss_pred CeEEEEEEecCCccHHHHHHhh----------cChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 9999999999999999998751 234558999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhce
Q 011655 316 DSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSI 395 (480)
Q Consensus 316 Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i 395 (480)
||+||||+|+||||+++||||+++||||++|+.+++++||+++. +.||||+|+||+++++|++||++|++++|
T Consensus 255 Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~-------~~GsIT~~~TVlv~~hdm~e~i~d~v~~i 327 (438)
T PRK07721 255 DSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN-------ASGSITAFYTVLVDGDDMNEPIADTVRGI 327 (438)
T ss_pred eChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC-------CCCCeeeEEEEEEECCCCCchhhhhEEEe
Confidence 99999999999999999999999999999999999999999972 46999999999999999999999999999
Q ss_pred ecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 396 VQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 396 ~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
+||||+||++|+++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|++++|++|.
T Consensus 328 ~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~li~~g~ 390 (438)
T PRK07721 328 LDGHFVLDRQLANKGQYPAINVLKSVSRVMNHI------VSPEHKEAANRFRELLSTYQNSEDLINIGA 390 (438)
T ss_pred cCEEEEEeccHHHCCCCCccCCccccccccccc------CCHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 999999999999999999999999999999988 899999999999999999999999999887
No 46
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=1.5e-85 Score=653.99 Aligned_cols=237 Identities=32% Similarity=0.508 Sum_probs=226.5
Q ss_pred ccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC---CCEEEEEeeCCchh
Q 011655 173 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYVGCGERGN 248 (480)
Q Consensus 173 ~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~---~dv~V~~~iGer~~ 248 (480)
++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++++++.. .+++||++||||++
T Consensus 32 ~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 32 KTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred ccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH
Confidence 4688877777 8999999999999999999999999999999999999999999999987743 78899999999999
Q ss_pred HHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeecccchHHHHHHHH
Q 011655 249 EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALRE 327 (480)
Q Consensus 249 Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~Dsltr~a~A~re 327 (480)
||+||++++ .+.++|+||++|++|+|+||.+|++++|+|+++||||||+ |+||||++||+||||+|+||
T Consensus 112 Ev~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~re 181 (274)
T cd01133 112 EGNDLYHEM----------KESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181 (274)
T ss_pred HHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHH
Confidence 999999984 5678899999999999999999999999999999999998 99999999999999999999
Q ss_pred HhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhh
Q 011655 328 ISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLA 407 (480)
Q Consensus 328 is~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La 407 (480)
||+++||+|+++||||++|+.|++||||||+. ++||||+|++|++++||++|||||++++|+||||+|||+||
T Consensus 182 is~~~ge~p~~~gyp~~~f~~~~~l~ERag~~-------~~GSiT~~~~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la 254 (274)
T cd01133 182 VSALLGRMPSAVGYQPTLATEMGALQERITST-------KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIA 254 (274)
T ss_pred HHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC-------CCcccceEEEEEecCCCCCCchHHHHHHhcceEEEEcHHHH
Confidence 99999999999999999999999999999973 57999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccccchh
Q 011655 408 QRKHFPSVNWLISYSKYST 426 (480)
Q Consensus 408 ~~g~yPAId~l~S~SR~~~ 426 (480)
++||||||||+.|+||+|+
T Consensus 255 ~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 255 ELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred hCCCCCCcCCccchhcccC
Confidence 9999999999999999875
No 47
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.8e-84 Score=682.92 Aligned_cols=353 Identities=30% Similarity=0.450 Sum_probs=323.3
Q ss_pred CCCccCCEEEecC-C--cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVGH-D--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~~-~--~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+.+.+||+|+|.. + .+.|||++++++.+.+++|++|+||++|++|++||++++||+|++|||||||++|||||+...
T Consensus 40 ~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~vg~~llGrv~d~~G~pld~~~~ 119 (442)
T PRK06315 40 PDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETK 119 (442)
T ss_pred CCcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEecccccCCEEeccCcccccccC
Confidence 5689999999943 2 489999999999999999999999999999999999999999999999999999999997310
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
+++..
T Consensus 120 -------------~~~~~-------------------------------------------------------------- 124 (442)
T PRK06315 120 -------------GPLEN-------------------------------------------------------------- 124 (442)
T ss_pred -------------CCccc--------------------------------------------------------------
Confidence 01100
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcC-CCC
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS-NSD 236 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-~~d 236 (480)
..+.||+..++| +++|.++++||.||||+||.++|+++|||++|||++|+|||+|+.+|+++. .++
T Consensus 125 ------------~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 192 (442)
T PRK06315 125 ------------VDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD 192 (442)
T ss_pred ------------ccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhcccccCC
Confidence 012356544444 789999999999999999999999999999999999999999999999876 567
Q ss_pred EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecc
Q 011655 237 TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 316 (480)
Q Consensus 237 v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~D 316 (480)
..|++++|||++|+.+|.++. + +. ..++++++|++|++++|..|+.++++|+++|||||++|++||+++|
T Consensus 193 ~~vi~liGerg~ev~~~~~~~------l---~~-~g~~~svvvvats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~D 262 (442)
T PRK06315 193 VNVIALIGERGREVREFIEGD------L---GE-EGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD 262 (442)
T ss_pred ceEEEEECCCchHHHHHHHHH------H---Hh-cCCceEEEEEeCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhh
Confidence 789999999999999999761 2 22 4588999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
++||||+|+|||++++||||+++||||++||.|++|+||||+. ++||||+||||++++||++|||+|++++|+
T Consensus 263 s~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~-------~~GSITai~tVl~~gdD~~dpi~d~~~~i~ 335 (442)
T PRK06315 263 SVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS-------DKGTITAFYTVLVAGDDMNEPVADEVKSIL 335 (442)
T ss_pred HHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC-------CCcceeeeEEEEecCCCCCcccHHHhhhhc
Confidence 9999999999999999999999999999999999999999984 479999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|++++|++|+
T Consensus 336 dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~e~li~~g~ 397 (442)
T PRK06315 336 DGHIVLSNALAQAYHYPAIDVLASISRLLTAI------VPEEQRRIIGKAREVLAKYKANEMLIRIGE 397 (442)
T ss_pred ceEEEEeccHHHcCCCCCccchhhhcccchhc------CCHHHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 99999999999999999999999999999988 899999999999999999999999999887
No 48
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=9.8e-85 Score=647.34 Aligned_cols=238 Identities=27% Similarity=0.378 Sum_probs=226.2
Q ss_pred cccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-EEEEeeCCchhHH
Q 011655 174 AWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEM 250 (480)
Q Consensus 174 ~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv-~V~~~iGer~~Ev 250 (480)
+||++.++| +++|.++++||.||||+||+|+|||||||++|||++|+|||+| +++|+++.++|+ +||++||||++|+
T Consensus 33 ~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev 112 (274)
T cd01132 33 RRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTV 112 (274)
T ss_pred eeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHH
Confidence 578877777 8999999999999999999999999999999999999999999 578999988887 5999999999999
Q ss_pred HHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhh
Q 011655 251 AEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISG 330 (480)
Q Consensus 251 ~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~ 330 (480)
+||++++ .+.+.++||++|++|+|+||.+|++++|+|+++||||||+|+||||++||+||||+|+||||+
T Consensus 113 ~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl 182 (274)
T cd01132 113 AQVVKTL----------EEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSL 182 (274)
T ss_pred HHHHHHH----------HhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHH
Confidence 9999984 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcC
Q 011655 331 RLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRK 410 (480)
Q Consensus 331 ~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g 410 (480)
++||||+++||||++|+.+++|+||||++++.. ++||||+|++|++|+||++|||||++++||||||+|||+||++|
T Consensus 183 ~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~---~~GSIT~i~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g 259 (274)
T cd01132 183 LLRRPPGREAYPGDVFYLHSRLLERAAKLNDEL---GGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKG 259 (274)
T ss_pred hcCCCCCCcCcCchHHHHhHHHHHHhhhccCCC---CCcceEEEEEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCC
Confidence 999999999999999999999999999986421 46999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccc
Q 011655 411 HFPSVNWLISYSKY 424 (480)
Q Consensus 411 ~yPAId~l~S~SR~ 424 (480)
|||||||+.|+||+
T Consensus 260 ~yPaId~l~S~SR~ 273 (274)
T cd01132 260 IRPAINVGLSVSRV 273 (274)
T ss_pred CCCCcCCcccccCC
Confidence 99999999999996
No 49
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=7.3e-82 Score=642.18 Aligned_cols=268 Identities=31% Similarity=0.462 Sum_probs=257.6
Q ss_pred cccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHH
Q 011655 174 AWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 174 ~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e 252 (480)
+||+..++| +++|.++++|+.||+++||.++|+++|||++|||++|+|||+|+.+|+++.+++++++++||||++|+.+
T Consensus 33 ~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~ 112 (326)
T cd01136 33 RYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVRE 112 (326)
T ss_pred cccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHH
Confidence 577766665 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhc
Q 011655 253 VLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 332 (480)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ 332 (480)
|.+++ ...+.++||+||++|+|+||.+|++++++|+++||||||+|+||||++||+||||+|+|||++++
T Consensus 113 ~~~~~----------~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ 182 (326)
T cd01136 113 FIEKD----------LGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAA 182 (326)
T ss_pred HHHHH----------HhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHhc
Confidence 99862 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCCC
Q 011655 333 AEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 412 (480)
Q Consensus 333 ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~y 412 (480)
||||+++|||+++|+.+++||||||+. +.||||+|++|++|+||++|||++++++|+||||+|||+||++|||
T Consensus 183 ge~p~~~gyp~~~~~~~~~l~ERag~~-------~~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~ 255 (326)
T cd01136 183 GEPPTTKGYPPSVFALLPRLLERAGNS-------DKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHY 255 (326)
T ss_pred CCCCCcCCcChHHHHHhHHHHHHhcCC-------CCCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCC
Confidence 999999999999999999999999996 4599999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 413 PSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 413 PAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
||||++.|+||+++.+ ++++|++++.++|++|++|+|++++|++|.
T Consensus 256 PAid~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~ 301 (326)
T cd01136 256 PAIDVLKSISRLMNAV------VTPEHKEAARKLRELLSAYQEVEDLIRIGA 301 (326)
T ss_pred CCcccccccccCcccc------CCHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 9999999999999988 899999999999999999999999999875
No 50
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-79 Score=632.63 Aligned_cols=354 Identities=28% Similarity=0.381 Sum_probs=329.0
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
|.++..||++++. ++..|.++.+++|.+.+.++++.+.|+.|+.|..||+.++||+|+.|||||+|.+|+|+|+.++
T Consensus 44 l~~~~~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~-- 120 (504)
T COG0056 44 LENVMAGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGP-- 120 (504)
T ss_pred CchhhcCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEecchhhcceeecCCCCccCCCCC--
Confidence 4678999999996 6689999999999999999999999999999999999999999999999999999999998542
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
++.+
T Consensus 121 -------------i~~~--------------------------------------------------------------- 124 (504)
T COG0056 121 -------------IDAT--------------------------------------------------------------- 124 (504)
T ss_pred -------------cccc---------------------------------------------------------------
Confidence 1111
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHH-HHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQ-ALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~-~ia~~~~~dv- 237 (480)
..-|+....| +++|.++++||+|||++||+|+|||||||.+|.|+.+||||.++. .|.||.+.++
T Consensus 125 ------------~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIAidtIiNQk~~~v~ 192 (504)
T COG0056 125 ------------KTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGSGVK 192 (504)
T ss_pred ------------ccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhhHHHHHhcccCCcE
Confidence 0113333344 899999999999999999999999999999999999999999998 5899988887
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||++.+.|.++++. | ++.++|++|+||++++++|+..+|++||++|++|||||++|+|||+++||
T Consensus 193 CIYVAIGQK~stva~vv~t-------L---~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDD 262 (504)
T COG0056 193 CIYVAIGQKRSTVANVVRT-------L---EEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDD 262 (504)
T ss_pred EEEEEcccchHHHHHHHHH-------H---HHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecC
Confidence 9999999999999999987 3 67899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc-CCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC-LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~-~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
||++|.||||||+++++||+|++|||++|.-+++|+|||++++. +| +||||++|++.+.++|++..||+|+.|||
T Consensus 263 LsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g----~GSiTALPIIETqagDvSAyIpTNVISIT 338 (504)
T COG0056 263 LSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELG----GGSITALPIIETQAGDVSAYIPTNVISIT 338 (504)
T ss_pred chHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccC----CCceEeeeeEEeccCceeeecccceEEec
Confidence 99999999999999999999999999999999999999999983 33 49999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
||||+|+.+|+++|+.||||+..|+||+.... +.+...+++..+|..|++|+|++.+.++|.|
T Consensus 339 DGQIfl~t~LFn~G~rPAInvGlSVSRvGssA------Q~kamkkvag~lrl~laqYrel~afsqf~sd 401 (504)
T COG0056 339 DGQIFLETDLFNAGIRPAINVGLSVSRVGSAA------QIKAMKKVAGSLRLILAQYRELEAFSQFGSD 401 (504)
T ss_pred CCcEEeehhhhhcCCCccccCCceeeccchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999987 6788999999999999999999999998876
No 51
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-78 Score=611.16 Aligned_cols=352 Identities=30% Similarity=0.484 Sum_probs=317.8
Q ss_pred cCCEEEecCC---cEEEEEEEE-eCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 6 MYELVRVGHD---NLIGEIIRL-EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 6 igE~v~v~~~---~l~gEVi~~-~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
++....+... .+..||..+ .++.+....++.|+||..|+.|..||+|++||||++.||||||.+|+|||+.++
T Consensus 27 I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~--- 103 (468)
T COG0055 27 IYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGP--- 103 (468)
T ss_pred hhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEecchhhcccchhccCCcccccCC---
Confidence 4444555433 378899885 457889999999999999999999999999999999999999999999998431
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+... +
T Consensus 104 ------------~~~~---------------------------------------~------------------------ 108 (468)
T COG0055 104 ------------IKAE---------------------------------------D------------------------ 108 (468)
T ss_pred ------------CCcc---------------------------------------c------------------------
Confidence 1000 0
Q ss_pred ECCeEEEEeecccccccCCCCc-ccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhc---CCCCE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRPV-SSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDT 237 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p~-~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~---~~~dv 237 (480)
..+||+++++|. .+...-+|.|+||||+||+|+|+.||+|+|+||++|+|||+|+++|++| .+..+
T Consensus 109 ----------~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~ 178 (468)
T COG0055 109 ----------FEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY 178 (468)
T ss_pred ----------cceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCe
Confidence 136899888884 4555668999999999999999999999999999999999999998877 47789
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeecc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMAD 316 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~D 316 (480)
.||+++|||.||-.|++.++ .+.+.+++|++|...+|+||++|.+.+.+++|+||||||+ |+|||+++|
T Consensus 179 SVFaGvGERtREGndLy~Em----------~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFID 248 (468)
T COG0055 179 SVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFID 248 (468)
T ss_pred EEEEeccccccchHHHHHHH----------HhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhcccCCeEEEEeh
Confidence 99999999999999999884 5678899999999999999999999999999999999985 999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 317 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 317 sltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
+++||.+|.+|+|.++|++|+.-||+|.|.+++..|.||... +++||||++++|++|+||++||.|.++++||
T Consensus 249 NIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts-------tk~GSITSiQavyvPaDDlTDPapattFaHL 321 (468)
T COG0055 249 NIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS-------TKKGSITSVQAVYVPADDLTDPAPATTFAHL 321 (468)
T ss_pred hhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc-------CCCCceEEEEEEEeccccCCCcchhhhhhhc
Confidence 999999999999999999999999999999999999999988 3789999999999999999999999999999
Q ss_pred cEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 397 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 397 dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
|..++|||++|+.|+|||||||.|.||. ++|.+ +.++||++|.+++++|++|+||+|+|+ +|.|-+
T Consensus 322 Dat~vLsR~ia~~GIyPAvDPL~StSr~---l~p~i--vGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdEL 388 (468)
T COG0055 322 DATTVLSRQIAALGIYPAVDPLDSTSRA---LDPKI--VGEEHYEVAREVQSILQRYKELQDIIAILGMDEL 388 (468)
T ss_pred ccceeeeHhHHhcCCCcccCcccccccc---cCccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhc
Confidence 9999999999999999999999999996 44545 569999999999999999999999999 999875
No 52
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.3e-73 Score=581.89 Aligned_cols=360 Identities=27% Similarity=0.416 Sum_probs=324.5
Q ss_pred CCCccCCEEEecC---CcEEEEEEEEeCCEEEEEEecCCCCCCCCCe-EEEcCCccEEecCccccccccccccCcccccc
Q 011655 2 NGAAMYELVRVGH---DNLIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVELGPGILGNIFDGIQRPLKTIA 77 (480)
Q Consensus 2 ~~a~igE~v~v~~---~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~-V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~ 77 (480)
.+++.||+|+|.. ....|+|+.++++.+.+||||.|+||...+. |+++|+++.+++++.||||+|||+|+|+|+.+
T Consensus 24 eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~PiDggp 103 (463)
T COG1156 24 EGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGP 103 (463)
T ss_pred cCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCCCcCCCCC
Confidence 4789999999952 3579999999999999999999999999977 99999999999999999999999999999965
Q ss_pred ccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceE
Q 011655 78 IRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTV 157 (480)
Q Consensus 78 ~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v 157 (480)
+...+ +.+ ++.|. .+|
T Consensus 104 ~i~~e----------------------------~~~---dI~g~-----------~~N---------------------- 119 (463)
T COG1156 104 EIVPE----------------------------DRL---DINGA-----------PIN---------------------- 119 (463)
T ss_pred cCCCC----------------------------ccc---ccCCC-----------CCC----------------------
Confidence 32111 111 12110 122
Q ss_pred EEEEECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCC-
Q 011655 158 LELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD- 236 (480)
Q Consensus 158 ~~~~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d- 236 (480)
+..|..|.++++|||++||+|+++.||||++||+++|.....|+.+||+|+..+
T Consensus 120 -------------------------P~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~LaaqIarQA~v~~ 174 (463)
T COG1156 120 -------------------------PYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDG 174 (463)
T ss_pred -------------------------chhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHHHHHHHhcccCC
Confidence 357889999999999999999999999999999999999999999999997543
Q ss_pred -----EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH-HCCCc
Q 011655 237 -----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYN 310 (480)
Q Consensus 237 -----v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr-d~G~d 310 (480)
.+||+++|-..+|...|.++| ...++++|++++.|.+|+|+.+|..+|.+|+|.||||+ ++++|
T Consensus 175 ~~e~favVfaamGit~eea~fF~~~f----------e~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~~h 244 (463)
T COG1156 175 EEEEFAVVFAAMGITHEEALFFMDEF----------EETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMH 244 (463)
T ss_pred CccceeEEEeecCccHHHHHHHHHHH----------HhhhhhhhhHhhhhccCCCceeEecchhHHHHHHHHHhccCCce
Confidence 499999999999999999885 66799999999999999999999999999999999999 57999
Q ss_pred eeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhh
Q 011655 311 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTS 390 (480)
Q Consensus 311 Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~ 390 (480)
||+++-|+|+||+|+||||.+.+|.|+++|||+|||++|+.+|||||+++ .++||||.+++++||+||++|||||
T Consensus 245 VLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~-----g~~GSiTqipIlTMP~DDITHPIPD 319 (463)
T COG1156 245 VLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIR-----GRKGSITQIPILTMPGDDITHPIPD 319 (463)
T ss_pred EEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceec-----cCCCceEEEEeeecCCCCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999997 3689999999999999999999999
Q ss_pred hhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 391 ATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 391 ~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
+|.+||+|||+|||+|..+|+||+||++.|+||+|+... -.+ +.++|.+++.++-+.+++.+++++|.. +|++++
T Consensus 320 lTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~gi--G~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~aL 396 (463)
T COG1156 320 LTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGI--GEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEAL 396 (463)
T ss_pred ccceeccceEEEEhhcccCCcCCCccccccHHHHhhccc--CCCccccccHHHHHHHHHHHhcchhHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999762 122 568999999999999999999999999 677665
No 53
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=2.5e-69 Score=522.50 Aligned_cols=215 Identities=46% Similarity=0.686 Sum_probs=203.2
Q ss_pred cccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc
Q 011655 195 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 274 (480)
Q Consensus 195 TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~ 274 (480)
||||+||+|+|||||||++|||++|+|||+|+++|+++.++|++||++||||++|+.+|++++ .+.+.++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~----------~~~~~~~ 70 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEEL----------KGEGALE 70 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHH----------HHTTGGG
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHH----------hhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999983 5678899
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHH
Q 011655 275 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYE 354 (480)
Q Consensus 275 rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~E 354 (480)
||++|++++|+|+.+|++++++|+++||||||+|+|||+++||+||||+|+|||++++||+|+++|||+++|+.+++|||
T Consensus 71 ~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~E 150 (215)
T PF00006_consen 71 RTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYE 150 (215)
T ss_dssp GEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHT
T ss_pred ccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccc
Q 011655 355 RAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYS 422 (480)
Q Consensus 355 Rag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~S 422 (480)
|||++. ..+++||||+|++|++|+||++|||++++++|+|+||+|||+||++||||||||+.|+|
T Consensus 151 Rag~~~---~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 151 RAGKVN---SEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp TSEEBS---TTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred Hhhccc---cccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 999982 12367999999999999999999999999999999999999999999999999999997
No 54
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=4e-68 Score=547.25 Aligned_cols=298 Identities=18% Similarity=0.192 Sum_probs=267.6
Q ss_pred CCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCCccccCCCCccCCCCcCcccccccccccCCccccCC
Q 011655 37 TAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGG 116 (480)
Q Consensus 37 t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g 116 (480)
..||+.|+.|..++++ ++|..+||||+|++|+|+|+... +.+
T Consensus 56 ~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~~-------------------~~~---------------- 97 (380)
T PRK12608 56 RFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLAR-------------------RPH---------------- 97 (380)
T ss_pred HhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhccc-------------------ccC----------------
Confidence 4589999999999999 99999999999999999997420 000
Q ss_pred cceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEEECCeEEEEeecccccccCCCCcccccCCCCcc-cc
Q 011655 117 DLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPL-LT 195 (480)
Q Consensus 117 ~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl-~T 195 (480)
|.+ ..|+ .+.+|.++.+++ .+
T Consensus 98 -----------~~~--~~pi---------------------------------------------~p~~R~~ie~~~~~~ 119 (380)
T PRK12608 98 -----------FDD--LTPL---------------------------------------------HPRERLRLETGSDDL 119 (380)
T ss_pred -----------cCc--CCCC---------------------------------------------CccccccccccCcch
Confidence 001 1121 145777888777 89
Q ss_pred ccceeccccccccccccccCCCCCCCchHHHHHHhhcC---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 011655 196 GQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 271 (480)
Q Consensus 196 GIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~ 271 (480)
|+|+||+|+|||||||++|+|++|+|||||+++|+++. +.|+ +++++||||++|+++|++. +
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~-------i------- 185 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRS-------V------- 185 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHH-------H-------
Confidence 99999999999999999999999999999999988753 3466 6999999999999999976 1
Q ss_pred CcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHH
Q 011655 272 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLAS 351 (480)
Q Consensus 272 ~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~ 351 (480)
..+|+++++|+|+..|.+++++++++||||+++|+||+|++||+||||+|+||++++.||+|+ +|||+++|+.+++
T Consensus 186 ---~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~r 261 (380)
T PRK12608 186 ---KGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKR 261 (380)
T ss_pred ---hhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHH
Confidence 127889999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHhhcCcccCCCCCCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhh
Q 011655 352 FYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 430 (480)
Q Consensus 352 l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~ 430 (480)
|+||||+++ ++||||+|+||+++ +++++|||.+++++++||||+|||+||++|||||||+++|.||.|+.+
T Consensus 262 l~~~A~~~~------~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l-- 333 (380)
T PRK12608 262 LFGAARNIE------EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELL-- 333 (380)
T ss_pred HHHhcCCCC------CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhc--
Confidence 999999973 67999999999999 788899999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHhhhhHHHHH
Q 011655 431 FYEQFDPDFINIRTKAREVLQREDDLNEIV 460 (480)
Q Consensus 431 ~~~~~~~~~~~~~~~~r~~L~~y~e~~~li 460 (480)
++++|++.++++|++|+.|++++.+-
T Consensus 334 ----~~~~~~~~~~~~R~~l~~~~~~e~~~ 359 (380)
T PRK12608 334 ----LDSKELEKVRRLRRALASRKPVEAME 359 (380)
T ss_pred ----CCHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999998877653
No 55
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-68 Score=531.83 Aligned_cols=346 Identities=28% Similarity=0.447 Sum_probs=310.4
Q ss_pred CcEEEEEEEEeC-CEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCCccccCCCCccCC
Q 011655 15 DNLIGEIIRLEG-DSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPA 93 (480)
Q Consensus 15 ~~l~gEVi~~~~-~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~ 93 (480)
.++..||..+-+ +.+....++.|+||..|++|..||.|++||+|++.||||+|.+|+|+|+.+ |
T Consensus 85 ~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG~~tLGRI~NViGePiDerG---------------p 149 (521)
T KOG1350|consen 85 TRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPVGPETLGRIMNVIGEPIDERG---------------P 149 (521)
T ss_pred ceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeecCHHHHhhHHHhcCCcccccC---------------C
Confidence 347888888655 778999999999999999999999999999999999999999999999854 2
Q ss_pred CCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEEECCeEEEEeecc
Q 011655 94 LDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQ 173 (480)
Q Consensus 94 l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~ 173 (480)
++.. .|.
T Consensus 150 i~s~---~~~---------------------------------------------------------------------- 156 (521)
T KOG1350|consen 150 IKSK---KYS---------------------------------------------------------------------- 156 (521)
T ss_pred cccc---ccc----------------------------------------------------------------------
Confidence 2221 011
Q ss_pred cccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhc---CCCCEEEEEeeCCchhH
Q 011655 174 AWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNE 249 (480)
Q Consensus 174 ~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~---~~~dv~V~~~iGer~~E 249 (480)
|++..+| +.+...-.|.|.||||++|+|.|..||+|+|+||++|+|||+|+++++|| +|..+.||+++|||.||
T Consensus 157 --~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~GvGERTRE 234 (521)
T KOG1350|consen 157 --PIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE 234 (521)
T ss_pred --ccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEeecccccccc
Confidence 3444445 55666777889999999999999999999999999999999999999887 47789999999999999
Q ss_pred HHHHHHhcccccc-CCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCCceeeecccchHHHHHHHH
Q 011655 250 MAEVLMDFPQLTM-TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALRE 327 (480)
Q Consensus 250 v~e~~~~~~~~~~-~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G~dVlll~Dsltr~a~A~re 327 (480)
-.+++.+|.|... .+ ++...+..+|...+|+||++|.+.+.+++|+|||||| .|+|||+++|+++||.+|..|
T Consensus 235 GNDLY~EM~E~gVI~l-----~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSE 309 (521)
T KOG1350|consen 235 GNDLYHEMIESGVINL-----EGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSE 309 (521)
T ss_pred ccHHHHHHHhcCeeec-----cCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchH
Confidence 9999999866532 22 2334789999999999999999999999999999998 599999999999999999999
Q ss_pred HhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhh
Q 011655 328 ISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLA 407 (480)
Q Consensus 328 is~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La 407 (480)
+|.++|++|+.-||+|.+..++..+.||.... ++||||++++|++|+||++||.|..+++++|...+|||.+|
T Consensus 310 VSALLGRiPSAVGYQPTLaTdMG~mQERITtT-------kkGSiTSvQAvYVPADDLtDPaPattFaHLDAttVLSR~ia 382 (521)
T KOG1350|consen 310 VSALLGRIPSAVGYQPTLATDMGTMQERITTT-------KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIA 382 (521)
T ss_pred HHHHhccCccccccCcccccchhhhhHhhhcc-------ccCceeEEEEEEeehhccCCCCccceeeccchhhhhhhhhH
Confidence 99999999999999999999999999999874 78999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCccc
Q 011655 408 QRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWS 467 (480)
Q Consensus 408 ~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~ 467 (480)
+.|+|||+|||.|.||+|+- .+ +.++||+.++.++++|+.|++++|+|. +|+|-+
T Consensus 383 elgIYPAVDPLDStSrimdp---~i--vG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDEL 438 (521)
T KOG1350|consen 383 ELGIYPAVDPLDSTSRIMDP---NI--VGEEHYNVARGVQKTLQDYKSLQDIIAILGMDEL 438 (521)
T ss_pred hcCCccccCCccccccccCc---cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999998763 22 579999999999999999999999999 998865
No 56
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=7.3e-67 Score=514.85 Aligned_cols=359 Identities=25% Similarity=0.370 Sum_probs=319.3
Q ss_pred ccCCEEEec---CCcEEEEEEEEeCCEEEEEEecCCCCCCCC-CeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 5 AMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVN-DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 5 ~igE~v~v~---~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G-~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
+..|+|.+. +....|+|+.++++++.+||||.|+||..- +.|++||+.+..|+++.+|||||||.|+|+|+.+...
T Consensus 44 ~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl 123 (489)
T KOG1351|consen 44 KYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVL 123 (489)
T ss_pred chhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceEEEecccccccccHHHhhhhhcCCCCccCCCCCcC
Confidence 567787773 234689999999999999999999999976 7799999999999999999999999999999865433
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
...|+ ||.|+ .+|
T Consensus 124 ~edyl-------------------------------di~gq-----------pin------------------------- 136 (489)
T KOG1351|consen 124 AEDYL-------------------------------DINGQ-----------PIN------------------------- 136 (489)
T ss_pred hHHhh-------------------------------ccCCC-----------cCC-------------------------
Confidence 22221 12221 122
Q ss_pred EECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCC------
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------ 234 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~------ 234 (480)
+..|..+.|+++|||.+||.|+.|+||||++||+.+|.....++.+|++|+.
T Consensus 137 ----------------------p~~riypeemiqtgis~idvmnsiargqkipifsaaglphneiaaqicrqaglvk~~~ 194 (489)
T KOG1351|consen 137 ----------------------PYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPE 194 (489)
T ss_pred ----------------------cccccChHHHHHhCchHHhhhhHHhccCccceeecCCCChhHHHHHHHHhcCccccCC
Confidence 3578899999999999999999999999999999999999999999998741
Q ss_pred ---------CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 011655 235 ---------SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR 305 (480)
Q Consensus 235 ---------~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr 305 (480)
...+||+++|-.-+..+-|..+| .+.+.|+|++++.|.+++|..+|...|..|+|.|||++
T Consensus 195 k~~~d~~~dnfaivfaamgvnmetarffk~df----------eengsm~~v~lflnlandptieriitprlalt~aefla 264 (489)
T KOG1351|consen 195 KDVHDGHEDNFAIVFAAMGVNMETARFFKQDF----------EENGSMERVCLFLNLANDPTIERIITPRLALTTAEFLA 264 (489)
T ss_pred cccccccccceeeeehhhcccHHHHHHHHhhH----------HhcCCccceEEEEecCCCCchhhhcchhhhHhHHHHHH
Confidence 23589999999998888777764 66789999999999999999999999999999999999
Q ss_pred H-CCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCC
Q 011655 306 D-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDF 384 (480)
Q Consensus 306 d-~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~ 384 (480)
. .+||||+++.|++.||+|+||+|.+.+|.|+|+|||+|||.+|+.+|||||++++ ++||||.|++++||.||+
T Consensus 265 yq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrveg-----r~gsitqipiltmpnddi 339 (489)
T KOG1351|consen 265 YQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEG-----RNGSITQIPILTMPNDDI 339 (489)
T ss_pred HhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhccccc-----CCCceeeeeeEecCCccc
Confidence 7 5999999999999999999999999999999999999999999999999999983 789999999999999999
Q ss_pred CChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-c
Q 011655 385 SDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-V 462 (480)
Q Consensus 385 ~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~ 462 (480)
+|||||.|.+|++|||+.||+|+++.+||+||+|.|+||+|+.. .-++ ..++|-++..++-.-++--++++.+-. +
T Consensus 340 thpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksa--igegmtr~dh~dvsnqlya~yaigkdvqamkavv 417 (489)
T KOG1351|consen 340 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA--IGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 417 (489)
T ss_pred CCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHH--hcCCcccccchhhHHHHHHHHHhcchHHHHHHHh
Confidence 99999999999999999999999999999999999999999975 2233 368999999999888888899999999 9
Q ss_pred CCccccc
Q 011655 463 GYLWSLS 469 (480)
Q Consensus 463 G~d~~~~ 469 (480)
|+|++-+
T Consensus 418 geeals~ 424 (489)
T KOG1351|consen 418 GEEALSS 424 (489)
T ss_pred cccccCh
Confidence 9999865
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=4.2e-63 Score=511.46 Aligned_cols=332 Identities=21% Similarity=0.297 Sum_probs=273.7
Q ss_pred cCcccccccccccc--Ccc-ccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeecccccccccc
Q 011655 57 LGPGILGNIFDGIQ--RPL-KTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 133 (480)
Q Consensus 57 lG~gLLGrV~DglG--rPL-d~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~ 133 (480)
.+.|+|--.-||.| |.. .+..+.+.|.|++..+. + ...++.||.|.+- +
T Consensus 50 ~~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~i-------r-----~~~lr~gd~v~g~-----~----------- 101 (416)
T PRK09376 50 FGEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQI-------R-----RFNLRTGDTVEGK-----I----------- 101 (416)
T ss_pred EEEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHH-------H-----hcCCCCCCEEEEE-----e-----------
Confidence 35677776667766 555 34556666777664421 1 2257788887542 2
Q ss_pred CCCCCCCcEEEecCCCCccccceEEEEE-ECCeEEEEeecccccc--cCCCCcccccCCCC--ccccccceecccccccc
Q 011655 134 LPPDAMGKVTYVAPAGQYSLKDTVLELE-FQGVKKSFTMLQAWPV--RTPRPVSSKLAADT--PLLTGQRVLDALFPSVL 208 (480)
Q Consensus 134 ~pp~~~g~v~~~~~~g~~~~~~~v~~~~-~~~~~~~~~m~~~wpv--r~~~p~~~R~~~~e--pl~TGIraID~l~Pigk 208 (480)
-+|... +-.| .+.+++ +||...+-. .++-++ -.|..+.+|..+.+ |+.||+|+||+|+||||
T Consensus 102 r~~~~~--------e~~~----~l~~v~~vng~~~~~~-~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGk 168 (416)
T PRK09376 102 RPPKEG--------ERYF----ALLKVETVNGEDPEKA-RNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDLIAPIGK 168 (416)
T ss_pred eCCCCC--------CCcc----ceEEEeeeCCCCHHHh-cCCCCcccCCCCChhhcccccCCCCcccceeeeeeeccccc
Confidence 122210 1112 466676 666543211 122222 23444789999988 79999999999999999
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 284 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~---~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d 284 (480)
|||++||||+|+|||||+++|+++. +.|+ +++++||||++|+.++.+. + . .+||++|+|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrs-------I---l-------g~vv~st~d 231 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRS-------V---K-------GEVVASTFD 231 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHH-------h---c-------CcEEEECCC
Confidence 9999999999999999999998864 3466 5889999999999999976 2 1 379999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCC
Q 011655 285 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG 364 (480)
Q Consensus 285 ~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~ 364 (480)
+||..|++++++++++||||+++|+||+|++||+||||+||||++++.|++|+ +||++++++.+++|+||||+++
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e---- 306 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE---- 306 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC----
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999973
Q ss_pred CCCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHH
Q 011655 365 PERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR 443 (480)
Q Consensus 365 ~~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~ 443 (480)
++||||+|+|++++ ++++.|||.+++++++|+||+|||+||++|||||||+++|.||.++.+ ++++|++++
T Consensus 307 --~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l------~~~~~~~~~ 378 (416)
T PRK09376 307 --EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELL------LSPEELQKV 378 (416)
T ss_pred --CCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCccCcccccccccccc------CCHHHHHHH
Confidence 67999999999999 778889999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhhhhHHHH
Q 011655 444 TKAREVLQREDDLNEI 459 (480)
Q Consensus 444 ~~~r~~L~~y~e~~~l 459 (480)
+++|++|+.|++.+.+
T Consensus 379 ~~lR~~l~~~~~~e~~ 394 (416)
T PRK09376 379 WILRKILSPMDEVEAM 394 (416)
T ss_pred HHHHHHHHccCcHHHH
Confidence 9999999999877654
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=5.8e-61 Score=510.66 Aligned_cols=264 Identities=23% Similarity=0.281 Sum_probs=234.1
Q ss_pred eEEEEE-ECCeEEEEeecccccccC--CCCcccccCCC-CccccccceeccccccccccccccCCCCCCCchHHHHHHhh
Q 011655 156 TVLELE-FQGVKKSFTMLQAWPVRT--PRPVSSKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 156 ~v~~~~-~~~~~~~~~m~~~wpvr~--~~p~~~R~~~~-epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.+.+++ +||...+- ..++-++.. |.++.+|..+. +|+.||+|+||+|+|||||||++||||+|+|||+|+++|++
T Consensus 360 ~l~~v~~vNg~~~e~-~~~r~~F~~Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 360 PLVRLDSVNGMSPEE-AKKRPEFGKLTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred eeeeEeeeCCCChHH-hccCCCcccCCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHH
Confidence 567776 67764331 123333333 33378999988 99999999999999999999999999999999999999998
Q ss_pred cC---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEE---EEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 011655 232 YS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT---LVANTSNMPVAAREASIYTGITIAEYF 304 (480)
Q Consensus 232 ~~---~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtv---vv~~t~d~p~~~r~~a~~~a~tiAEyf 304 (480)
+. +.++ +||++||||++||++|. |+| ||++|+|+||..|++++|+|+++||||
T Consensus 439 ~i~~n~~~~~~ivvLIgERpeEVtdm~--------------------rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~f 498 (672)
T PRK12678 439 AITTNNPECHLMVVLVDERPEEVTDMQ--------------------RSVKGEVIASTFDRPPSDHTTVAELAIERAKRL 498 (672)
T ss_pred HHhhcCCCeEEEEEEEeCchhhHHHHH--------------------HhccceEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 64 4555 67999999999998864 455 999999999999999999999999999
Q ss_pred HHCCCceeeecccchHHHHHHHHHhhhcCC-----CCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEec
Q 011655 305 RDMGYNVSMMADSTSRWAEALREISGRLAE-----MPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSP 379 (480)
Q Consensus 305 rd~G~dVlll~Dsltr~a~A~reis~~~ge-----~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~ 379 (480)
+++|+|||||+|||||||+||||++++.|+ +|+..+|||++|..+++++| ++||||+|+||++
T Consensus 499 re~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE------------~gGSLTii~TvLV 566 (672)
T PRK12678 499 VELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIE------------NGGSLTIIATALV 566 (672)
T ss_pred HHcCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhc------------cCccceeeEEEEe
Confidence 999999999999999999999999999999 79999999999988888777 3499999999999
Q ss_pred C-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHH
Q 011655 380 P-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNE 458 (480)
Q Consensus 380 ~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~ 458 (480)
+ ++++.+||.+++++++|+||+|||+||++||||||||++|+||+++.| ++++|+++++++|++|+.|+..+.
T Consensus 567 ETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ee~l------~~~~e~~~~~~lRr~l~~~~~~~a 640 (672)
T PRK12678 567 ETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEELL------LSPDELAIVHKLRRVLSGLDSQQA 640 (672)
T ss_pred ccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccchhh------CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9 556678999999999999999999999999999999999999999999 999999999999999999976544
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=6.3e-56 Score=459.79 Aligned_cols=238 Identities=21% Similarity=0.270 Sum_probs=221.6
Q ss_pred ccccccceeccccccccccccccCCCCCCCchHHHHHHhhcC---CCC-EEEEEeeCCchhHHHHHHHhccccccCCCCC
Q 011655 192 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDG 267 (480)
Q Consensus 192 pl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~d-v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~ 267 (480)
+-..|+|+||+++|||+|||++|+|++|+|||||+.+|++.. +.+ .++++++|||++|+.+|++. +
T Consensus 151 ~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrs-------I--- 220 (415)
T TIGR00767 151 TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRS-------V--- 220 (415)
T ss_pred ccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHH-------h---
Confidence 445799999999999999999999999999999999998863 233 46889999999999999975 2
Q ss_pred CccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHH
Q 011655 268 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAA 347 (480)
Q Consensus 268 ~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s 347 (480)
...||++|+|+|+..|.+++++++++||||+++|+||+|++|++||||+|+||++++.||+|+ +||||++|+
T Consensus 221 -------lg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~ 292 (415)
T TIGR00767 221 -------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALH 292 (415)
T ss_pred -------hceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhc
Confidence 248999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchh
Q 011655 348 RLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYST 426 (480)
Q Consensus 348 ~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~ 426 (480)
.+++|+||||+++ ++||||+|+||+++ |++++|||.+++++++||||+|||+||++|||||||+++|.||.++
T Consensus 293 ~~~~~~~~a~~~~------~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~ 366 (415)
T TIGR00767 293 RPKRFFGAARNIE------EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEE 366 (415)
T ss_pred ccHHHHhhcCCCC------CCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchh
Confidence 9999999999973 67999999999999 6677889999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHH
Q 011655 427 ALESFYEQFDPDFINIRTKAREVLQREDDLNEI 459 (480)
Q Consensus 427 ~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~l 459 (480)
.+ ++++|++.++++|++|+.|++.+.+
T Consensus 367 ~l------~~~~~~~~~~~~r~~l~~~~~~~~~ 393 (415)
T TIGR00767 367 LL------LTPEELQKIWVLRKIISPMDSIEAM 393 (415)
T ss_pred hc------CCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99 9999999999999999999876543
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=1.1e-52 Score=414.75 Aligned_cols=236 Identities=21% Similarity=0.285 Sum_probs=220.1
Q ss_pred ccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC---CE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 011655 196 GQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS---DT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 271 (480)
Q Consensus 196 GIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~---dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~ 271 (480)
..|+||+|+|+++|||++|+|++|+|||||+++|+++.+. |+ ++++++|+|+.|+.+|++. +
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~-------I------- 68 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRS-------V------- 68 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHH-------h-------
Confidence 3599999999999999999999999999999999987543 55 4667799999999999975 1
Q ss_pred CcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHH
Q 011655 272 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLAS 351 (480)
Q Consensus 272 ~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~ 351 (480)
++++|++++|+|+..|+++++.++++||||+++|++|++++|++||||+|+||+++..|++| .+|||+++|+.+++
T Consensus 69 ---~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q 144 (249)
T cd01128 69 ---KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKR 144 (249)
T ss_pred ---ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHH
Confidence 68899999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred HHHhhcCcccCCCCCCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhh
Q 011655 352 FYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 430 (480)
Q Consensus 352 l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~ 430 (480)
++||||++. ++||||++||++++ +++..||+.++.++++|+||+|||+|+..|+|||||++.|.||.++.+
T Consensus 145 ~~~~Ar~~~------~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll-- 216 (249)
T cd01128 145 FFGAARNIE------EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELL-- 216 (249)
T ss_pred HHHHhcCCC------CCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhh--
Confidence 999999963 57999999999999 556667999999999999999999999999999999999999999988
Q ss_pred hhccCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011655 431 FYEQFDPDFINIRTKAREVLQREDDLNEIVQ 461 (480)
Q Consensus 431 ~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 461 (480)
.+++|++.+.++|++|+.|++++++..
T Consensus 217 ----~~~~~~~~~~~~r~~~~~~~~~~~~~~ 243 (249)
T cd01128 217 ----LDPEELQRMWLLRRVLSDMDPIEAMEF 243 (249)
T ss_pred ----CCHHHHHHHHHHHHHHHccChHHHHHH
Confidence 789999999999999999999999876
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.1e-45 Score=370.27 Aligned_cols=231 Identities=23% Similarity=0.291 Sum_probs=209.2
Q ss_pred cceeccccccccccccccCCCCCCCchHHHHHHhhc---CCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCC
Q 011655 197 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESV 272 (480)
Q Consensus 197 IraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~---~~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~ 272 (480)
-|+||++.|||||||.+|++||.+|||+|++.||+. .+.++ .++.+|+||++||+++.+. .
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrs-------V-------- 225 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRS-------V-------- 225 (422)
T ss_pred hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHh-------h--------
Confidence 389999999999999999999999999999999986 46777 6888999999999997753 1
Q ss_pred cccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHH
Q 011655 273 MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASF 352 (480)
Q Consensus 273 ~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l 352 (480)
+.-||+||+|+||..|.+.+.+.+.-|.++.++|+||++++||+||+|+||+-+.-..|+.-+ .|--+..+.+..+|
T Consensus 226 --~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKrF 302 (422)
T COG1158 226 --KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRF 302 (422)
T ss_pred --cceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhcCchhh
Confidence 367999999999999999999999999999999999999999999999999999999999877 57777888899999
Q ss_pred HHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhh-hhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhh
Q 011655 353 YERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSA-TLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESF 431 (480)
Q Consensus 353 ~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~-~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~ 431 (480)
|..|++++ .+||+|+|+|.++++|+.+|.|--+ ..+.-+..++|||+||++++|||||+.+|.+|.++.+
T Consensus 303 FGAARNIE------eGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLL--- 373 (422)
T COG1158 303 FGAARNIE------EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELL--- 373 (422)
T ss_pred hhhhhccc------cCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhc---
Confidence 99999994 7899999999999999999888544 4444478899999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHhhhhHH
Q 011655 432 YEQFDPDFINIRTKAREVLQREDDLN 457 (480)
Q Consensus 432 ~~~~~~~~~~~~~~~r~~L~~y~e~~ 457 (480)
.++++.+..+.+|++|+...+.+
T Consensus 374 ---l~~~~l~k~w~lRr~l~~md~~~ 396 (422)
T COG1158 374 ---LSPDELQKMWVLRRILSPMDEID 396 (422)
T ss_pred ---CCHHHHHHHHHHHHHhcCCChHH
Confidence 89999999999999999655443
No 62
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=2.9e-31 Score=257.88 Aligned_cols=255 Identities=22% Similarity=0.292 Sum_probs=221.6
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
.++.-+|+|++. .+++|.-..++.+.+.+.+|++..-++.|+.|..|+.-..||+|+.||||+.|++|+|+|+.++
T Consensus 38 ~nvQAeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~--- 113 (340)
T KOG1353|consen 38 TNVQAEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKALLGRVGCALGEPIDGNGK--- 113 (340)
T ss_pred cccchHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCchHHHhhhhhhhhcCeecCCCC---
Confidence 456667777774 4588999999999999999999999999999999999999999999999999999999998542
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+... +|+
T Consensus 114 ------------i~~~-------------------------------~~~------------------------------ 120 (340)
T KOG1353|consen 114 ------------ISAK-------------------------------ERR------------------------------ 120 (340)
T ss_pred ------------cccc-------------------------------ccc------------------------------
Confidence 1110 011
Q ss_pred ECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHH-HhhcC---C---
Q 011655 162 FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQA-LSKYS---N--- 234 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~-ia~~~---~--- 234 (480)
+..|....+|++||+|++|++.|||||||.+|.|+..+|||.|+.. |.++. +
T Consensus 121 ---------------------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~dTI~nqk~~N~~~~ 179 (340)
T KOG1353|consen 121 ---------------------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAIDTILNQKRGNECLD 179 (340)
T ss_pred ---------------------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeeehhhhhhhhhccccc
Confidence 3567889999999999999999999999999999999999999885 55543 1
Q ss_pred ---CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCce
Q 011655 235 ---SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV 311 (480)
Q Consensus 235 ---~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dV 311 (480)
.=.|||++||++.+.|.+++.. | .+.++|++|++|++|++
T Consensus 180 ekkKiyCvyvaigqkrStvaqlv~~-------l---~~~~a~~y~ivv~atas--------------------------- 222 (340)
T KOG1353|consen 180 EKKKIYCVYVAIGQKRSTVAQLVQR-------L---EEADAMEYSIVVAATAS--------------------------- 222 (340)
T ss_pred ccceEEEEEEecccchhHHHHHHHH-------H---HhcCCceEEEEEEeecc---------------------------
Confidence 1249999999999999999986 3 56789999999999988
Q ss_pred eeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhh
Q 011655 312 SMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSA 391 (480)
Q Consensus 312 lll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~ 391 (480)
.++|.+.+||.+
T Consensus 223 --------------------------------------------------------------------q~gdvsayiptn 234 (340)
T KOG1353|consen 223 --------------------------------------------------------------------QAGDVSAYIPTN 234 (340)
T ss_pred --------------------------------------------------------------------cccceeeecccc
Confidence 345667789999
Q ss_pred hhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCcc
Q 011655 392 TLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLW 466 (480)
Q Consensus 392 ~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d~ 466 (480)
+.|| ||+|.|..+|+.+|+.||||+..|+||+.... +.+...+++..++--|++|+|+....++|.|-
T Consensus 235 visi-dgqi~l~t~lfy~girpainvg~svsrvgsaa------q~kamkqvag~~klelaq~revaafaqfgsdl 302 (340)
T KOG1353|consen 235 VISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAA------QTKAMKQVAGSLKLELAQYREVAAFAQFGSDL 302 (340)
T ss_pred eeee-cchhHHHHHHHHhccchhheeeeEeeeccchH------HHHHHHHHhhhhhhHHHHHHHHHHHHHhcccc
Confidence 9999 99999999999999999999999999998876 56888999999999999999999999999873
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.14 E-value=1.7e-09 Score=96.28 Aligned_cols=158 Identities=32% Similarity=0.426 Sum_probs=119.0
Q ss_pred cccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 289 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~ 289 (480)
++|+|++|+|||+++..++.+. ....++|....+...++.+....+ ......++..++....+.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 71 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGE----------SLKGALDNLIIVFATADDPAAA 71 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhh----------hhccccccEEEEEcCCCCCcHH
Confidence 5789999999999999988764 244678888888877776544321 1223445666666665555443
Q ss_pred HHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCcc
Q 011655 290 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTG 369 (480)
Q Consensus 290 r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~G 369 (480)
... .++.++.......++++|+++.+.+...+. ..+++..+...+.+|++++.+ .
T Consensus 72 ~~~------~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~----------~ 126 (165)
T cd01120 72 RLL------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK----------G 126 (165)
T ss_pred HHH------HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc----------C
Confidence 322 557777778888899999999999876653 346788888899999999876 5
Q ss_pred ceeEEEEEecCCCCCCCh----hhhhhhceecEEEEecH
Q 011655 370 SVTIVGAVSPPGGDFSDP----VTSATLSIVQVFWGLDK 404 (480)
Q Consensus 370 SIT~i~~v~~~~~d~~dp----v~~~~~~i~dg~i~Lsr 404 (480)
.+|++.+.....++..++ .++.+..+.|+.|.|+|
T Consensus 127 ~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 127 GVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 789999999998888888 88888889999999875
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.40 E-value=5.9e-07 Score=94.10 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 286 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p 286 (480)
++=..+.++||||+|||||+..||+..+.++.-+-++-..-.|+++++++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~------------------------------ 95 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE------------------------------ 95 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH------------------------------
Confidence 33345789999999999999999999888877777777777788887764
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHH
Q 011655 287 VAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALRE 327 (480)
Q Consensus 287 ~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~re 327 (480)
|+.++..|+.++|++|.++||-.++++
T Consensus 96 --------------a~~~~~~gr~tiLflDEIHRfnK~QQD 122 (436)
T COG2256 96 --------------ARKNRLLGRRTILFLDEIHRFNKAQQD 122 (436)
T ss_pred --------------HHHHHhcCCceEEEEehhhhcChhhhh
Confidence 777788899999999999999999998
No 65
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.17 E-value=3.1e-06 Score=81.78 Aligned_cols=179 Identities=21% Similarity=0.151 Sum_probs=101.0
Q ss_pred ccccceecccc--ccccccccccCCCCCCCchHHHHHHhh-cC-C-CCEEEEEeeCCchhHHHHHHHhccccccCCCCCC
Q 011655 194 LTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK-YS-N-SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGR 268 (480)
Q Consensus 194 ~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~-~~-~-~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~ 268 (480)
.|||..+|-++ -+-+|.-++|.|+||+|||+|+.+++. +. + ..-++|+..-+..+++.+-.+.|- .++ .
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g---~d~---~ 75 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG---WDL---E 75 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT---S-H---H
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC---CcH---H
Confidence 59999999999 778999999999999999999998663 32 3 456899999999998888777531 111 0
Q ss_pred ccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHH
Q 011655 269 EESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAAR 348 (480)
Q Consensus 269 ~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~ 348 (480)
......+-.++-......-......-...-.+.+.+.+.+. -.+++||++-+ .+. .-|..+...
T Consensus 76 ~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~--------------~~~~~~r~~ 139 (226)
T PF06745_consen 76 EYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLY--------------DDPEELRRF 139 (226)
T ss_dssp HHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTS--------------SSGGGHHHH
T ss_pred HHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhc--------------CCHHHHHHH
Confidence 00001123333222221100000111233445555555455 57889999844 111 112234445
Q ss_pred HHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhc-eecEEEEecHH
Q 011655 349 LASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLS-IVQVFWGLDKK 405 (480)
Q Consensus 349 l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~-i~dg~i~Lsr~ 405 (480)
+..|+....+. | +|++.+...+.+....... .... +.|+-|.|+..
T Consensus 140 l~~l~~~l~~~---------~-~t~llt~~~~~~~~~~~~~-~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 140 LRALIKFLKSR---------G-VTTLLTSEMPSGSEDDGTF-GIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHHHHT---------T-EEEEEEEEESSSSSSSSST-SHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHC---------C-CEEEEEEccccCccccccc-chhhhcccEEEEEEEE
Confidence 66666666542 3 4666677765432222211 2223 78999888753
No 66
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.15 E-value=4.2e-06 Score=66.68 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=42.0
Q ss_pred CccCCEEEec----CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcC
Q 011655 4 AAMYELVRVG----HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTH 50 (480)
Q Consensus 4 a~igE~v~v~----~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg 50 (480)
..+++.+++. ...+.|||+++++|.+.+|+|++|+||++|++|++||
T Consensus 19 ~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 19 PGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 3577888876 3568999999999999999999999999999999986
No 67
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.15 E-value=2.1e-05 Score=75.44 Aligned_cols=50 Identities=32% Similarity=0.410 Sum_probs=39.9
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEe
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVG 242 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~ 242 (480)
+.||+..+|.++. +.+|.-..|+|+||+|||+++.+++.+. ...-++|.-
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4699999999996 7788889999999999999999987653 223355543
No 68
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.02 E-value=3.2e-05 Score=76.64 Aligned_cols=186 Identities=22% Similarity=0.149 Sum_probs=109.7
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc-CC-CCEEEEEeeCCchhHHHHHHHhccccccCCCC
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-SN-SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPD 266 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~-~~-~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~ 266 (480)
+.+.|||.-+|-++- +-+|.-++|.|+||+|||+++.+.+.+ +. ..-++|+..-|...++.+....|---....
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~-- 80 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY-- 80 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH--
Confidence 346799999999999 789999999999999999999997654 33 345999999999999999887631110000
Q ss_pred CCccCCcccEEEEEeCCCCCHH---H--HHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCC
Q 011655 267 GREESVMKRTTLVANTSNMPVA---A--REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGY 341 (480)
Q Consensus 267 ~~~~~~~~rtvvv~~t~d~p~~---~--r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gy 341 (480)
. +.-+-.++-..+...+.. . -.....+.-.+-+...+.+ ...+++||++.+......
T Consensus 81 -~--~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~-------------- 142 (260)
T COG0467 81 -I--EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLND-------------- 142 (260)
T ss_pred -h--hcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCc--------------
Confidence 0 111122222222222211 0 0123335556666666766 666788999965444332
Q ss_pred cchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhh
Q 011655 342 PAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 408 (480)
Q Consensus 342 p~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~ 408 (480)
+......+..+..... +.+ +|++.+...+.+...+. ...-++.||.|.|+....+
T Consensus 143 ~~~~r~~~~~l~~~~~---------~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~ 197 (260)
T COG0467 143 PALVRRILLLLKRFLK---------KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIE 197 (260)
T ss_pred hHHHHHHHHHHHHHHH---------hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeeccc
Confidence 1111122222222222 224 77776665444333331 1223378999998876655
No 69
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.97 E-value=7.2e-05 Score=81.35 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=103.8
Q ss_pred CCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 011655 189 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 264 (480)
Q Consensus 189 ~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l 264 (480)
..+.+.|||..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+ ....-++|+..-+..+++.+-.+.| -.++
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~---g~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW---GIDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc---CCCh
Confidence 45668999999999986 789999999999999999999998754 2344578888888888777666542 1111
Q ss_pred CCCCccCCcccEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcc
Q 011655 265 PDGREESVMKRTTLVAN-TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 343 (480)
Q Consensus 265 ~~~~~~~~~~rtvvv~~-t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~ 343 (480)
.+.....+..++.. +......+. ...+.+...+.+.+ ++++||++-+..+.. +.
T Consensus 328 ---~~~~~~g~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~~-~vVIDslt~l~~~~~---------------~~ 382 (509)
T PRK09302 328 ---EKMEEKGLLKIICARPESYGLEDH------LIIIKREIEEFKPS-RVAIDPLSALARGGS---------------LN 382 (509)
T ss_pred ---HHHhhcCCceeecCCcccCCHHHH------HHHHHHHHHHcCCC-EEEEcCHHHHHHhCC---------------HH
Confidence 00000112222222 111112211 12233333344444 789999996643221 11
Q ss_pred hhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhh-hhhhceecEEEEecHH
Q 011655 344 YLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVT-SATLSIVQVFWGLDKK 405 (480)
Q Consensus 344 ~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~-~~~~~i~dg~i~Lsr~ 405 (480)
.+...+..|...+.+ -.+|++.|..++...-.++.+ ..+.++.|+.|.|+..
T Consensus 383 ~~~~~l~~l~~~~k~----------~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~ 435 (509)
T PRK09302 383 EFRQFVIRLTDYLKS----------EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYV 435 (509)
T ss_pred HHHHHHHHHHHHHHh----------CCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEe
Confidence 223334445544443 235777787665532122322 2356778999998754
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.89 E-value=3.5e-05 Score=65.34 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=54.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCCE--EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSDT--VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 285 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~dv--~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~ 285 (480)
+++.+.|+|++|+|||+++..++++..... ++++.+ +...+....... ......+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~ 58 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-EDILEEVLDQLL---------------------LIIVGGKK 58 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-EEccccCHHHHH---------------------hhhhhccC
Confidence 478899999999999999999998865542 333333 332222111100 00011111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHH
Q 011655 286 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 328 (480)
Q Consensus 286 p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~rei 328 (480)
....+.......++.|++.. ..++++|++.++.......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 59 ASGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHH
Confidence 22233344445555555433 6889999998766655543
No 71
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.89 E-value=0.0001 Score=71.83 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=54.4
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDF 257 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~ 257 (480)
+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+ .+..-++|+..-+..+++.+-.+.|
T Consensus 5 ~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 5 EIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred eEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC
Confidence 457899999999985 668999999999999999999998643 2455688888888888777666553
No 72
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.79 E-value=0.00021 Score=71.30 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=44.2
Q ss_pred cccccceecccc----------------ccccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhH
Q 011655 193 LLTGQRVLDALF----------------PSVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNE 249 (480)
Q Consensus 193 l~TGIraID~l~----------------PigkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~E 249 (480)
+.|||+-+|.++ =+-+|.-..|.|+||+|||+++.+++.+ ....-++|+..-+..+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~ 78 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANF 78 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchH
Confidence 459999999986 3559999999999999999999997654 23345677766665543
No 73
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.78 E-value=0.00024 Score=68.74 Aligned_cols=64 Identities=28% Similarity=0.350 Sum_probs=50.1
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHh
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+.|||..+|-++. +-+|.-+.|.|+||+|||+|+.+++.+ ....-++|+...+..+++.+..+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHH
Confidence 4699999999875 669999999999999999999987643 233457788777777776655443
No 74
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.75 E-value=0.00042 Score=67.98 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=53.5
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHh
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+.|||.-+|-++. +-+|.-++|.|+||+|||+++.+++.+ .+..-++|+...|..+++.+-.+.
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHH
Confidence 5799999999775 669999999999999999999987643 245568999999999888776654
No 75
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.74 E-value=7.4e-05 Score=77.93 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=57.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCC---EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 287 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~d---v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~ 287 (480)
.+.++||||+|||+|+..|++.++.- .+-..+.-....+++++++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~------------------------------- 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ------------------------------- 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH-------------------------------
Confidence 36689999999999999999886544 35556777788888888864
Q ss_pred HHHHHHHHHHHHHHHHH-HHCCCceeeecccchHHHHHHHHH
Q 011655 288 AAREASIYTGITIAEYF-RDMGYNVSMMADSTSRWAEALREI 328 (480)
Q Consensus 288 ~~r~~a~~~a~tiAEyf-rd~G~dVlll~Dsltr~a~A~rei 328 (480)
|... -.-++..++++|.++||.++|+.+
T Consensus 213 -------------aq~~~~l~krkTilFiDEiHRFNksQQD~ 241 (554)
T KOG2028|consen 213 -------------AQNEKSLTKRKTILFIDEIHRFNKSQQDT 241 (554)
T ss_pred -------------HHHHHhhhcceeEEEeHHhhhhhhhhhhc
Confidence 2211 234778899999999999999884
No 76
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.73 E-value=0.00011 Score=71.13 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=70.7
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--C------CCEEEEEeeCC--chhHHHHHHHhcccc
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGE--RGNEMAEVLMDFPQL 260 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~------~dv~V~~~iGe--r~~Ev~e~~~~~~~~ 260 (480)
+.||++.+|-++. +.+|....|.|++|+|||+|+.+++.+. . ..-++|.-..+ +.+++.++.+.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~-- 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFG-- 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhc--
Confidence 3699999999986 7799999999999999999999987442 1 13466665444 2455555554320
Q ss_pred ccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 261 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 261 ~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+ .....+++..++...+. +.... .-..+-+.+.+.++--+|++||++.+.+
T Consensus 79 ---~---~~~~~~~~i~~~~~~~~----~~l~~--~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 79 ---L---DPEEVLDNIYVARAYNS----DHQLQ--LLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred ---c---ChHhHhcCEEEEecCCH----HHHHH--HHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 1 12345566555433221 11111 1112223333443667889999997654
No 77
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.73 E-value=0.00023 Score=77.26 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=110.5
Q ss_pred CCCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccC
Q 011655 188 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMT 263 (480)
Q Consensus 188 ~~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~ 263 (480)
...+.+.|||.-+|.++- +-+|.-++|.|+||+|||+|+.+++.+. +..-++|+.--|..+++..-.+.+ -.+
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l---g~~ 316 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW---GID 316 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc---CCC
Confidence 456679999999999874 7799999999999999999999987653 345689999999998887766552 111
Q ss_pred CCCCCccCCcc--cEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCC
Q 011655 264 LPDGREESVMK--RTTLVAN-TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSG 340 (480)
Q Consensus 264 l~~~~~~~~~~--rtvvv~~-t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~g 340 (480)
+ +...+ +-.++.. +....+.. .+-.+-+...+.+.+ ++++||++-+..+...
T Consensus 317 ~-----~~~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~------------- 371 (484)
T TIGR02655 317 F-----EEMEQQGLLKIICAYPESAGLED------HLQIIKSEIADFKPA-RIAIDSLSALARGVSN------------- 371 (484)
T ss_pred h-----HHHhhCCcEEEEEcccccCChHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH-------------
Confidence 1 11111 1223332 22222221 222223333344444 6789999976554311
Q ss_pred CcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhh-hhhceecEEEEecHHhhhcCCCCCCcccc
Q 011655 341 YPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTS-ATLSIVQVFWGLDKKLAQRKHFPSVNWLI 419 (480)
Q Consensus 341 yp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~-~~~~i~dg~i~Lsr~La~~g~yPAId~l~ 419 (480)
......+.+|.+-+.+ -.||.+.|..++.---..+++. .+-++.|+-|.|...-.+....-+|-+++
T Consensus 372 --~~~r~~~~~l~~~lk~----------~~it~~~t~~~~~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K 439 (484)
T TIGR02655 372 --NAFRQFVIGVTGYAKQ----------EEITGFFTNTSDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFK 439 (484)
T ss_pred --HHHHHHHHHHHHHHhh----------CCCeEEEeecccccccCCccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEE
Confidence 0112223334444433 3567777876664111123332 34567799888864433333333444444
Q ss_pred c
Q 011655 420 S 420 (480)
Q Consensus 420 S 420 (480)
+
T Consensus 440 ~ 440 (484)
T TIGR02655 440 M 440 (484)
T ss_pred c
Confidence 3
No 78
>PRK04328 hypothetical protein; Provisional
Probab=97.72 E-value=0.00034 Score=69.36 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=54.6
Q ss_pred ccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHh
Q 011655 192 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 192 pl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
.+.|||.-+|-++. +-+|.-+.|.|+||+|||+|+.+++.+ .+..-++|+...|.++++.+..+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH
Confidence 36799999999976 558999999999999999999987644 344568999999999998877665
No 79
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=0.0011 Score=64.12 Aligned_cols=55 Identities=35% Similarity=0.442 Sum_probs=43.1
Q ss_pred CCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeC
Q 011655 190 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCG 244 (480)
Q Consensus 190 ~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iG 244 (480)
++.+.||+..+|-++ -+-+|.-..|.|+||+|||+++.+++.+. ...-++|+-.-
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456889999999999 46678889999999999999999987542 22345666543
No 80
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.67 E-value=9.5e-05 Score=72.90 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=42.9
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEee-CCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGC-GERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 290 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~i-Ger~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r 290 (480)
+.++||||+|||||+.-||+..+..+.++.+. =++..++...+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il------------------------------------ 96 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL------------------------------------ 96 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH------------------------------------
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH------------------------------------
Confidence 68999999999999999999987766554442 13333333322
Q ss_pred HHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHH
Q 011655 291 EASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 328 (480)
Q Consensus 291 ~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~rei 328 (480)
...+..-+|++|.++||..++.|+
T Consensus 97 --------------~~l~~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 97 --------------TNLKEGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp --------------HT--TT-EEEECTCCC--HHHHHH
T ss_pred --------------HhcCCCcEEEEechhhccHHHHHH
Confidence 222344578889999999999994
No 81
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.64 E-value=0.0002 Score=68.83 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=36.1
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.||+..+|-++. +-+|+-..|.|++|+|||+|+.+++.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4699999999874 889999999999999999999998765
No 82
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.61 E-value=0.00018 Score=73.14 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=76.7
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHhcc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDFP 258 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~~~ 258 (480)
..+.||++.+|.++. +-+|.-..|+|+||+|||+++.+++.+. ...-+||+-.-+ +.+.+.++.+.|
T Consensus 75 ~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~- 153 (310)
T TIGR02236 75 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEAR- 153 (310)
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHc-
Confidence 347799999999986 6688889999999999999999987552 123688888777 577777777642
Q ss_pred ccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC-ceeeecccchHHHH
Q 011655 259 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAE 323 (480)
Q Consensus 259 ~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~-dVlll~Dsltr~a~ 323 (480)
.+ .....+++..++.....++ +. ...-.+.+++.+.+. --+|++||++-+-+
T Consensus 154 ----gl---~~~~~~~~i~i~~~~~~~~---~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 154 ----GL---DPDEVLKNIYVARAYNSNH---QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred ----CC---CHHHHhhceEEEecCCHHH---HH---HHHHHHHHHHHhcCCCceEEEEecchHhhh
Confidence 11 1112344544443332221 11 122235566665443 33889999996543
No 83
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.00046 Score=71.41 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=69.9
Q ss_pred Cccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 011655 191 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 265 (480)
Q Consensus 191 epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~ 265 (480)
+.+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.+. ....++|+-.-+.... ++.+. +
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~a~~-------l- 103 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYARK-------L- 103 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HHHHH-------c-
Confidence 457899999999998 6688899999999999999999865442 2334666644333332 22322 1
Q ss_pred CCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 266 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 266 ~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+- .+++.+ ++. .+. .+ .++.+++.+..++.--+|++||++.+..
T Consensus 104 ---Gv-d~~~l~-v~~-p~~--~e------q~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 104 ---GV-DIDNLL-VSQ-PDT--GE------QALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred ---CC-CHHHeE-Eec-CCC--HH------HHHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 11 123333 322 221 22 2456667777777777899999996654
No 84
>PRK09354 recA recombinase A; Provisional
Probab=97.44 E-value=0.00049 Score=71.93 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=73.0
Q ss_pred CCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 011655 190 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 264 (480)
Q Consensus 190 ~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l 264 (480)
.+.+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.+ .....++|+-.-+.... ++.+. +
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~--~~a~~-------l 108 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYAKK-------L 108 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH--HHHHH-------c
Confidence 3457899999999998 557778889999999999999987643 23345777766544442 33333 1
Q ss_pred CCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 265 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 265 ~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+-+ +++- +++ ..+. . ..++.+++.+..++.--+|++||++-+..
T Consensus 109 ----Gvd-ld~l-li~-qp~~--~------Eq~l~i~~~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 109 ----GVD-IDNL-LVS-QPDT--G------EQALEIADTLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred ----CCC-HHHe-EEe-cCCC--H------HHHHHHHHHHhhcCCCCEEEEeChhhhcc
Confidence 111 3343 232 2221 2 23466777777778888999999996653
No 85
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.43 E-value=0.0028 Score=61.20 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=49.0
Q ss_pred ccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHh
Q 011655 196 GQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 196 GIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
||+.+|-++. +-+|.-+.|.|+||+|||+++.+++.+ .+..-++|.-.-+..+++.+-.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKS 65 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 6777888763 458999999999999999999988754 234468899999998888877765
No 86
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.42 E-value=0.0015 Score=71.13 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=56.8
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc-C-C-CCEEEEEeeCCchhHHHHHHHhc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-N-SDTVVYVGCGERGNEMAEVLMDF 257 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~-~-~-~dv~V~~~iGer~~Ev~e~~~~~ 257 (480)
+.+.|||..+|-++- +-+|+-++|.|+||+|||+|+.+++.+ . + ..-++|+..-|..+++.+-...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 357899999999974 889999999999999999999998654 2 2 45689999999999998877764
No 87
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.36 E-value=0.00084 Score=69.18 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHh
Q 011655 189 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMD 256 (480)
Q Consensus 189 ~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~ 256 (480)
....+.||++.+|.++- +-+|.=.-|+|++|+|||+|+.+++-+. ...-++|+-.-+ +++.+.++.+.
T Consensus 74 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 74 KVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred cCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34568899999999976 6688889999999999999999876321 123577777665 47777777765
Q ss_pred ccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 257 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
|. + ..+..+++ +.++...+ ..+... ....+.+.+.+. .--||++||++-+-+
T Consensus 154 ~g-----~---d~~~~l~~-i~~~~~~~--~e~~~~---~l~~l~~~i~~~-~~~LvVIDSisal~r 205 (313)
T TIGR02238 154 FG-----V---DPDAVLDN-ILYARAYT--SEHQME---LLDYLAAKFSEE-PFRLLIVDSIMALFR 205 (313)
T ss_pred cC-----C---ChHHhcCc-EEEecCCC--HHHHHH---HHHHHHHHhhcc-CCCEEEEEcchHhhh
Confidence 31 1 12234555 33322211 222211 112334444443 444789999986544
No 88
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.32 E-value=0.0024 Score=60.74 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=59.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCC-chhHHHHHHHhccccccCCCCCCccCCcccEEEEEeC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 282 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGe-r~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t 282 (480)
+-+|+-..|.|++|+|||+++.+++.+. ...-++|+-.-+ ....+.+..+.+++ ..+++.++ ...
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~-----------~~~~~i~~-~~~ 76 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPE-----------RALSNFIV-FEV 76 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChH-----------HHhcCEEE-EEC
Confidence 4578999999999999999999987542 234577777754 66666665543211 12344333 332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHH
Q 011655 283 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL 325 (480)
Q Consensus 283 ~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~ 325 (480)
.+ +.+... ....+.+.+.+.+. =+|++||++.+.++.
T Consensus 77 ~~--~~~~~~---~~~~l~~~~~~~~~-~lvVIDSis~l~~~~ 113 (209)
T TIGR02237 77 FD--FDEQGV---AIQKTSKFIDRDSA-SLVVVDSFTALYRLE 113 (209)
T ss_pred CC--HHHHHH---HHHHHHHHHhhcCc-cEEEEeCcHHHhHHH
Confidence 21 222211 12223444434333 377889999776543
No 89
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.31 E-value=0.00061 Score=71.12 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHh
Q 011655 189 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMD 256 (480)
Q Consensus 189 ~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~ 256 (480)
....+.||++.+|-++- +-+|.=.-|+|++|+|||+|+.+++-+. ...-++|+-.-+ +++.+.+..+.
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 44568999999999976 5578888899999999999999986321 123578887766 68888887765
Q ss_pred ccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 257 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
| . + .....+++. .++. ... ..+..... ..+.+.+.+. .--||++||++-+-+
T Consensus 184 ~---g--~---d~~~~l~~I-~~~~-~~~-~e~~~~~l---~~l~~~i~~~-~~~LvVIDSital~r 235 (344)
T PLN03187 184 F---G--M---DADAVLDNI-IYAR-AYT-YEHQYNLL---LGLAAKMAEE-PFRLLIVDSVIALFR 235 (344)
T ss_pred c---C--C---ChhhhcCeE-EEec-CCC-HHHHHHHH---HHHHHHHHhc-CCCEEEEeCcHHhhh
Confidence 3 1 1 122345553 2222 222 22222111 2233344443 345779999996644
No 90
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.26 E-value=0.0012 Score=71.82 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred ccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc-C-C-CCEEEEEeeCCchhHHHHHHHhc
Q 011655 192 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-N-SDTVVYVGCGERGNEMAEVLMDF 257 (480)
Q Consensus 192 pl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~-~-~-~dv~V~~~iGer~~Ev~e~~~~~ 257 (480)
.+.|||.-+|-++. +-+|...+|.|+||+|||+|+.+++.+ . + ..-++|+...|..+++.+-.+.|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 36799999999986 779999999999999999999997543 2 2 45688888899999988877663
No 91
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.21 E-value=0.0062 Score=59.83 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=44.2
Q ss_pred cccceeccccc--cccccccccCCCCCCCchHHHHHHhh-cC-CCCEEEEEeeCCchhHHHHHHHh
Q 011655 195 TGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YS-NSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 195 TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~-~~-~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+++.-+|-++. +-+|..++|.|++|+|||+|+.+++. .. +..-++|+...+...+..+....
T Consensus 8 ~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 8 LSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred EEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 45555555553 66799999999999999999766543 32 23347888888888877666654
No 92
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.20 E-value=0.0046 Score=57.22 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=35.3
Q ss_pred cccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHh
Q 011655 212 CAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+.|.|+||+|||+|+.+++.+. +..-++|+..-+..+++.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHH
Confidence 4688999999999999987642 33457788888888888777665
No 93
>PTZ00035 Rad51 protein; Provisional
Probab=97.17 E-value=0.0011 Score=68.90 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=73.8
Q ss_pred cccCCCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHH
Q 011655 185 SKLAADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAE 252 (480)
Q Consensus 185 ~R~~~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e 252 (480)
++..-...+.||++.+|.++- +-+|.-..|+|++|+|||+|+.+++.+. ...-++|+-.-+ +++.+.+
T Consensus 92 ~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 92 EARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred HhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 333445668999999999985 6678889999999999999999886432 223455655433 3566777
Q ss_pred HHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 253 VLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+.+.|. + .....+++..++ ...+ ..+..... ..+.+.+. +++--||++||++-+-+
T Consensus 172 ia~~~g-----~---~~~~~l~nI~~~-~~~~--~e~~~~~l---~~~~~~l~-~~~~~lvVIDSital~r 227 (337)
T PTZ00035 172 IAERFG-----L---DPEDVLDNIAYA-RAYN--HEHQMQLL---SQAAAKMA-EERFALLIVDSATALFR 227 (337)
T ss_pred HHHHhC-----C---ChHhHhhceEEE-ccCC--HHHHHHHH---HHHHHHhh-ccCccEEEEECcHHhhh
Confidence 665521 1 122445553332 2221 11221111 12233333 35556889999986543
No 94
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.16 E-value=0.00068 Score=70.26 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 011655 190 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 264 (480)
Q Consensus 190 ~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l 264 (480)
.+.+.||+..+|.++. +-+|.-.-|+|++|+|||+|+.+++.+ .....++|+-.-+... . ++.+. +
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~-~-~~a~~-------l 103 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD-P-VYAKK-------L 103 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH-H-HHHHH-------c
Confidence 3458899999999998 557888889999999999999997644 2334566665533332 2 23332 1
Q ss_pred CCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 265 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 265 ~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+-+ +++ ++++ ..+. . ..++.+++.+...+.-.+|++||++-+..
T Consensus 104 ----Gvd-~~~-l~v~-~p~~--~------eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 104 ----GVD-LDN-LLIS-QPDT--G------EQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred ----CCC-HHH-heec-CCCC--H------HHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 111 233 2333 2221 1 23466677777778888999999986653
No 95
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.14 E-value=0.0041 Score=67.27 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=46.8
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC-C-CCEEEEEeeCCchhHHH
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCGERGNEMA 251 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~-~-~dv~V~~~iGer~~Ev~ 251 (480)
+.+.|||.-+|-++. +.+|+-++|.|+||+|||||+.+++.+. . ..-++|+---|..+.+.
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 458999999999984 8899999999999999999999987653 2 22366665445544443
No 96
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.09 E-value=0.0062 Score=65.69 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=48.8
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHH
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVL 254 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~ 254 (480)
+.+.||+.-+|-++. +.+|+-+.|.|+||+|||+|+.+++.+. ...-++|+-.-|..+.+..-.
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra 127 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRA 127 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHH
Confidence 458899999999985 7789999999999999999999987653 233466766555555554433
No 97
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.03 E-value=0.0062 Score=64.30 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcCC--CCEEEEEeeCCchhHHH
Q 011655 190 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGERGNEMA 251 (480)
Q Consensus 190 ~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~~--~dv~V~~~iGer~~Ev~ 251 (480)
.+.+.|||.-+|-++- +.+|.-+.|.|+||+|||+|+.+++.+.. ..-++|+-.-|..+.+.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 3458899999999985 88999999999999999999999886532 23355654444444443
No 98
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.01 E-value=0.0023 Score=65.54 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=73.8
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHhcc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDFP 258 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~~~ 258 (480)
..+.||+..+|-++. +-+|.-..|+|++|+|||+++.+++-+. ....++|+-.-+ +.+.+.+..+.+.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 447899999999876 7789999999999999999999987542 123578888777 5677777665521
Q ss_pred ccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 259 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 259 ~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
+ ..+..+++..++-.. +..++.. ..-.+.+.+.+...--+|++||++-+-+
T Consensus 162 -----~---~~~~~l~~i~~~~~~---~~~~~~~---~~~~l~~~i~~~~~~~lvVIDSisa~~~ 212 (317)
T PRK04301 162 -----L---DPDEVLDNIHVARAY---NSDHQML---LAEKAEELIKEGENIKLVIVDSLTAHFR 212 (317)
T ss_pred -----C---ChHhhhccEEEEeCC---CHHHHHH---HHHHHHHHHhccCceeEEEEECchHHhh
Confidence 1 112345563333221 1122211 1112333333312333899999996544
No 99
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.98 E-value=0.0034 Score=65.54 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=74.5
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHhcc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDFP 258 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~~~ 258 (480)
..+.||++.+|.++. +-+|.-..|+|+||+|||+|+.+++.+. ...-++|+-.-+ +++.+.++.+.|.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~ 182 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFG 182 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcC
Confidence 448999999999776 5678888899999999999999887432 122577877766 6777777776531
Q ss_pred ccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHH
Q 011655 259 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 324 (480)
Q Consensus 259 ~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A 324 (480)
+ .....+++..++- ..+ ..+..... ..+++.+. .++--||++||++-+-+.
T Consensus 183 -----~---~~~~~l~~i~~~~-~~~--~e~~~~ll---~~~~~~~~-~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 183 -----L---NGADVLENVAYAR-AYN--TDHQSELL---LEAASMMA-ETRFALMIVDSATALYRT 233 (342)
T ss_pred -----C---ChhhhccceEEEe-cCC--HHHHHHHH---HHHHHHhh-ccCCCEEEEeCcHHHHHH
Confidence 1 1233455543332 222 22222211 12233333 344557899999976543
No 100
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=96.97 E-value=0.0019 Score=69.99 Aligned_cols=185 Identities=6% Similarity=-0.182 Sum_probs=157.3
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCc
Q 011655 280 ANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKV 359 (480)
Q Consensus 280 ~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~ 359 (480)
.....++..+..+|-++.+.++.++++..+|+=+.++.+.+++.+.+|...-+..-+....++.+.-+.|++.+++-..=
T Consensus 288 T~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYER 367 (588)
T COG1155 288 TVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYER 367 (588)
T ss_pred eeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHh
Confidence 55566777888999999999999999999999999999999999999998888888898999999999999999988763
Q ss_pred ccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHH
Q 011655 360 KCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPD 438 (480)
Q Consensus 360 ~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~ 438 (480)
.+.--..+.+++|..-||.-+..+...++.+.+-+.|-.+|.+.-.|..+.+++-..|..+.+-.-++...++.. ++++
T Consensus 368 aG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~ 447 (588)
T COG1155 368 AGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDEN 447 (588)
T ss_pred cCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcc
Confidence 332222356788888899999999999999999999999999999999999999999999999988887666655 3666
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH-cCC
Q 011655 439 FINIRTKAREVLQREDDLNEIVQ-VGY 464 (480)
Q Consensus 439 ~~~~~~~~r~~L~~y~e~~~li~-~G~ 464 (480)
+.....++|..+.+.-+.++-++ ++.
T Consensus 448 v~~~~~~~r~~a~~~Lq~e~elqeiv~ 474 (588)
T COG1155 448 VSPEWGALRDQAMEILQRESELQEIVQ 474 (588)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888877776665 543
No 101
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.93 E-value=0.0019 Score=68.62 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=35.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHh
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
...+.|+|++|+|||+|+..|++..+.+.+.+........+++++++.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEE 83 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHH
Confidence 346889999999999999999998877766555555555556665543
No 102
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.92 E-value=0.0033 Score=64.88 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=69.7
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC-----C---CCEEEEEeeCC--chhHHHHHHHhcc
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-----N---SDTVVYVGCGE--RGNEMAEVLMDFP 258 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~-----~---~dv~V~~~iGe--r~~Ev~e~~~~~~ 258 (480)
..+.||++.+|.++. +-+|.=+.|.|++|+|||+|+.+++.+. . ..-++|+-.-+ +.+.+.+..+.|
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~- 154 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY- 154 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc-
Confidence 448899999999776 5578888999999999999999987531 1 12456665544 355566655542
Q ss_pred ccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH
Q 011655 259 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 323 (480)
Q Consensus 259 ~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~ 323 (480)
.+ .....+++..+.-..+ +.+..... -.+.+.+.+ ++--||++||++-+-+
T Consensus 155 ----~~---~~~~~l~~i~~~~~~~---~~~~~~~l---~~~~~~~~~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 155 ----GL---NPEDVLDNVAYARAYN---TDHQLQLL---QQAAAMMSE-SRFALLIVDSATALYR 205 (316)
T ss_pred ----CC---ChHHhhccEEEEecCC---hHHHHHHH---HHHHHhhcc-CCccEEEEECcHHHhh
Confidence 11 1223455543332221 22222111 122333333 3445789999996643
No 103
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.90 E-value=0.0055 Score=52.88 Aligned_cols=108 Identities=17% Similarity=0.335 Sum_probs=62.1
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 291 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~ 291 (480)
++|.|++|+|||+++..+++..+.. ++..-+++ +... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-~~~i~~~~-------~~~~-----------------------------~~~~-- 41 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-FIEIDGSE-------LISS-----------------------------YAGD-- 41 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-EEEEETTH-------HHTS-----------------------------STTH--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-cccccccc-------cccc-----------------------------cccc--
Confidence 4689999999999999999987543 23332221 1100 0000
Q ss_pred HHHHHHHHHHHHHH---HCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCc
Q 011655 292 ASIYTGITIAEYFR---DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERT 368 (480)
Q Consensus 292 ~a~~~a~tiAEyfr---d~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~ 368 (480)
.--.+...|. ..++..++++|++..++... .+....+...+.+.|.+++++... ..
T Consensus 42 ----~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---------~~~~~~~~~~~~~~L~~~l~~~~~--------~~ 100 (132)
T PF00004_consen 42 ----SEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---------QPSSSSFEQRLLNQLLSLLDNPSS--------KN 100 (132)
T ss_dssp ----HHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---------STSSSHHHHHHHHHHHHHHHTTTT--------TS
T ss_pred ----cccccccccccccccccceeeeeccchhccccc---------ccccccccccccceeeeccccccc--------cc
Confidence 1111122222 23357999999998655544 222333444566667666666654 23
Q ss_pred cceeEEEEEec
Q 011655 369 GSVTIVGAVSP 379 (480)
Q Consensus 369 GSIT~i~~v~~ 379 (480)
..++.|.+...
T Consensus 101 ~~~~vI~ttn~ 111 (132)
T PF00004_consen 101 SRVIVIATTNS 111 (132)
T ss_dssp SSEEEEEEESS
T ss_pred ccceeEEeeCC
Confidence 56888877665
No 104
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.67 E-value=0.012 Score=58.30 Aligned_cols=65 Identities=18% Similarity=0.078 Sum_probs=50.1
Q ss_pred Cccccccceecccc-ccccccccccCCCCCCCchHHHHHHhhcC--C-CCEEEEEeeCCchhHHHHHHH
Q 011655 191 TPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 191 epl~TGIraID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~-~dv~V~~~iGer~~Ev~e~~~ 255 (480)
+=+.||+..+|-++ -+.+|.-..|.|++|+|||+++.+++.+. + ..-++|.-.-+...++.+.+.
T Consensus 11 ~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred cCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 34679999999975 36689999999999999999999987652 2 334667777777777776553
No 105
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.56 E-value=0.0037 Score=62.52 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHhc
Q 011655 190 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDF 257 (480)
Q Consensus 190 ~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~~ 257 (480)
...|.||++.||.++- +-.|+=.=|+|++|+|||.|+.+++-+. ...-+||.-..- +.+.+.++.+.|
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 3458899999999983 5566667789999999999999986432 123467775443 455566666553
Q ss_pred cccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHH
Q 011655 258 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL 325 (480)
Q Consensus 258 ~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~ 325 (480)
.+ ..+..++|..+.-.. + ..+...... .+...+.+ .+-=||++||++.+-+..
T Consensus 97 -----~~---~~~~~l~~I~v~~~~-~--~~~l~~~L~---~l~~~l~~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 97 -----GL---DPEEILDNIFVIRVF-D--LEELLELLE---QLPKLLSE-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp -----TS----HHHHHHTEEEEE-S-S--HHHHHHHHH---HHHHHHHH-SCEEEEEEETSSHHHHHH
T ss_pred -----cc---ccchhhhceeeeecC-C--HHHHHHHHH---HHHhhccc-cceEEEEecchHHHHHHH
Confidence 12 234567776554333 2 122222221 23344444 355688999999776643
No 106
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.53 E-value=0.0047 Score=70.70 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred Cccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 011655 191 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 265 (480)
Q Consensus 191 epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~ 265 (480)
+.+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.+ .....++|+-.-+..+ .+..+.+
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~--~~~A~~l-------- 108 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD--PDYAKKL-------- 108 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh--HHHHHHc--------
Confidence 457899999999987 668999999999999999999885443 2334567776555444 1233331
Q ss_pred CCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHH
Q 011655 266 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 322 (480)
Q Consensus 266 ~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a 322 (480)
+-+ +++. +++.... .++ ++.+++.+..++.--||++||++-+.
T Consensus 109 ---GvD-l~~l-lv~~~~~---~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 109 ---GVD-TDSL-LVSQPDT---GEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred ---CCC-hhHe-EEecCCC---HHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 111 2233 3332221 122 45556666666777889999998665
No 107
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.49 E-value=0.021 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.-+.|.|++|+|||+|+..++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998864
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.05 E-value=0.0093 Score=68.02 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
-++-..+.|.|++|+|||||+..|++..+.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345556889999999999999999987543
No 109
>PF13173 AAA_14: AAA domain
Probab=95.90 E-value=0.011 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+-+.|.|++|+|||||+.++++..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999988753
No 110
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.74 E-value=0.017 Score=61.11 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.7
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
++|+||||||||.++..||+..+...+
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i 177 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPI 177 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeE
Confidence 788999999999999999998776543
No 111
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.007 Score=60.34 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
=+.|.+|++.||+|++|+|||||+..|+...+.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 368999999999999999999999999876544
No 112
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.52 E-value=0.012 Score=61.16 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=68.5
Q ss_pred Cccccccceecccccc---ccccccccCCCCCCCchHHHHHHhhc-C-CCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 011655 191 TPLLTGQRVLDALFPS---VLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 265 (480)
Q Consensus 191 epl~TGIraID~l~Pi---gkGqr~~I~g~~g~GKT~L~~~ia~~-~-~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~ 265 (480)
+.+.||+.++|..++. -+|.=+=|+|++++|||+|+.....+ . ....++|+-+ |..-.. ++.+.
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-e~~ld~-~~a~~--------- 100 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-EHALDP-EYAES--------- 100 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-SS---H-HHHHH---------
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-cccchh-hHHHh---------
Confidence 4578999999999983 36777789999999999999875443 2 3335666655 332222 33433
Q ss_pred CCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCC
Q 011655 266 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 334 (480)
Q Consensus 266 ~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge 334 (480)
.+- .++|-+ ++-+ +. ...|+.++|.+...|.-.++++||+... --..|+-..+++
T Consensus 101 --lGv-dl~rll-v~~P-~~--------~E~al~~~e~lirsg~~~lVVvDSv~al-~p~~E~e~~~~~ 155 (322)
T PF00154_consen 101 --LGV-DLDRLL-VVQP-DT--------GEQALWIAEQLIRSGAVDLVVVDSVAAL-VPKAELEGEIGD 155 (322)
T ss_dssp --TT---GGGEE-EEE--SS--------HHHHHHHHHHHHHTTSESEEEEE-CTT--B-HHHHTTSTSS
T ss_pred --cCc-cccceE-EecC-Cc--------HHHHHHHHHHHhhcccccEEEEecCccc-CCHHHHhhcccc
Confidence 111 245643 3332 21 1256788999988888778999998633 233455555554
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.015 Score=59.42 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=73.2
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEE-eeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYV-GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 290 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~-~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r 290 (480)
+++|||||.|||||++-||+..+..+-+-. -.=||+.++.-++.. |
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~-------L-------------------------- 101 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTN-------L-------------------------- 101 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhc-------C--------------------------
Confidence 678999999999999999997766543322 122334333333321 1
Q ss_pred HHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHH----------hhhcCCCCCCCCCcchhHHHHHHHHHhhcCcc
Q 011655 291 EASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI----------SGRLAEMPADSGYPAYLAARLASFYERAGKVK 360 (480)
Q Consensus 291 ~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~rei----------s~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~ 360 (480)
+-.|| +++|.++|.+.+..|+ -...|+-|+.+ + -+++
T Consensus 102 ----------------e~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Ar----s------------v~ld 148 (332)
T COG2255 102 ----------------EEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAAR----S------------IRLD 148 (332)
T ss_pred ----------------CcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccc----e------------Eecc
Confidence 23444 5689999999999996 12233333322 1 1111
Q ss_pred cCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhh
Q 011655 361 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 408 (480)
Q Consensus 361 ~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~ 408 (480)
=---|.+++. +-.|-++.|.-|...-+..-..+-..+|++
T Consensus 149 -------LppFTLIGAT-Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 149 -------LPPFTLIGAT-TRAGMLTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred -------CCCeeEeeec-cccccccchhHHhcCCeeeeecCCHHHHHH
Confidence 1234777554 445788889987776666555555555543
No 114
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.50 E-value=0.064 Score=50.54 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=53.8
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCC-chhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 290 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGe-r~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r 290 (480)
+.|.|++|+|||+++.+++...... ++|....+ ...|+.+.++.+-+ . ++.. -++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~-~~y~at~~~~d~em~~rI~~H~~----~---R~~~---w~t------------- 57 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP-VTYIATAEAFDDEMAERIARHRK----R---RPAH---WRT------------- 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC-eEEEEccCcCCHHHHHHHHHHHH----h---CCCC---ceE-------------
Confidence 4689999999999999998764333 45555544 36678887765211 0 1111 111
Q ss_pred HHHHHHHHHHHHHHHHC-CCceeeecccchHHHHHHH
Q 011655 291 EASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALR 326 (480)
Q Consensus 291 ~~a~~~a~tiAEyfrd~-G~dVlll~Dsltr~a~A~r 326 (480)
......+++.+.+. +.+ ++++|++|-|...+.
T Consensus 58 ---~E~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 58 ---IETPRDLVSALKELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred ---eecHHHHHHHHHhcCCCC-EEEEEcHhHHHHHhC
Confidence 11233455556543 444 689999999988775
No 115
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.029 Score=61.13 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=55.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 289 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~ 289 (480)
-+++.|++|+||||++..+|+..+..- .-.-.||+-.. -.++... .. .-++-.+.++.--..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s-C~~i~~g-----------~~-----~dviEIdaas~~gVd 104 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS-CLEITKG-----------IS-----SDVLEIDAASNRGIE 104 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH-HHHHHcc-----------CC-----ccceeechhhcccHH
Confidence 368999999999999999998743311 11223444332 2222211 00 011112221111111
Q ss_pred HHHHHHHHHHHHHHHHHCCCceeeecccchHHHH-HHHHHhhhcCCCCC
Q 011655 290 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPA 337 (480)
Q Consensus 290 r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~-A~reis~~~ge~p~ 337 (480)
..+.. ..-+.|-...|+..++|+|...++.. |++.+=..+.|||.
T Consensus 105 ~IReL---~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~ 150 (484)
T PRK14956 105 NIREL---RDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150 (484)
T ss_pred HHHHH---HHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11111 11122222357778889998877765 66777677788764
No 116
>PRK05973 replicative DNA helicase; Provisional
Probab=95.42 E-value=0.068 Score=53.22 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHh
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
-+-+|+-+.|.|+||+|||+++.+++.+. +..-++|.-.-|..+++.+-...
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHH
Confidence 46789999999999999999999987642 34457888888888888876655
No 117
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.0094 Score=59.54 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=30.4
Q ss_pred cceec-cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 197 QRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 197 IraID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++++ .=+.+.+|+-+.|.|++|||||||+..||.-.
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 34689999999999999999999999998653
No 118
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.051 Score=60.25 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.5
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++.|++|+|||+++..+|+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999853
No 119
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.012 Score=55.76 Aligned_cols=36 Identities=28% Similarity=0.190 Sum_probs=30.7
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++-.+.+.+|..++|.|++|+|||||+..|+....
T Consensus 15 ~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 15 LLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 444456899999999999999999999999987643
No 120
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.17 E-value=0.011 Score=55.46 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 121
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.053 Score=59.07 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.||+|+||||++..+|+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998864
No 122
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.08 E-value=0.033 Score=56.08 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.4
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
.+-+.|.|++|+|||+|+..+++....++
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34589999999999999999998766554
No 123
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.024 Score=57.69 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCCccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEE-eeC-CchhHHHHHHHhccccc
Q 011655 188 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYV-GCG-ERGNEMAEVLMDFPQLT 261 (480)
Q Consensus 188 ~~~epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~-~iG-er~~Ev~e~~~~~~~~~ 261 (480)
...+.+.||.+.+|.++- +-+|.-.=|||++|+|||+|+.+++-++ ....++|+ .-| -+++....+...+
T Consensus 37 ~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~---- 112 (279)
T COG0468 37 EDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL---- 112 (279)
T ss_pred hccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh----
Confidence 336668899999999987 1255666789999999999999976542 33355554 444 4444444443320
Q ss_pred cCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC--ceeeecccchHHHHHH
Q 011655 262 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY--NVSMMADSTSRWAEAL 325 (480)
Q Consensus 262 ~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~--dVlll~Dsltr~a~A~ 325 (480)
+ .. ++++..+. ..-++.+++.+...+. ==|+++||++-+-++.
T Consensus 113 -----------~-d~-l~v~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 -----------L-DN-LLVSQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred -----------h-cc-eeEecCCC--------HHHHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 1 11 23333332 2345566666665544 5678999998655544
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.02 E-value=0.013 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 125
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.052 Score=59.39 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-.++.|++|+||||++..+|+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45779999999999999999874
No 126
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.014 Score=56.40 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=29.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 336889999999999999999999999987643
No 127
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.014 Score=54.48 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999999987643
No 128
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.91 E-value=0.015 Score=55.47 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3367889999999999999999999999987543
No 129
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.015 Score=56.40 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=28.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999999998754
No 130
>PF05729 NACHT: NACHT domain
Probab=94.83 E-value=0.047 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.5
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.|.|++|+|||+++..++.+
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 578999999999999998754
No 131
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.83 E-value=0.016 Score=55.18 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999998764
No 132
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.017 Score=55.12 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999764
No 133
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.77 E-value=0.017 Score=55.35 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 134
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.76 E-value=0.017 Score=54.97 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999999999987643
No 135
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.74 E-value=0.017 Score=55.26 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 5788999999999999999999999987643
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.73 E-value=0.2 Score=53.38 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
+..+++.||||+|||+|+..+|+..+...
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 34489999999999999999999866543
No 137
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.72 E-value=0.017 Score=55.21 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=27.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5788999999999999999999999987643
No 138
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.71 E-value=0.019 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346788999999999999999999999987643
No 139
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.70 E-value=0.018 Score=56.00 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36788999999999999999999999987643
No 140
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.70 E-value=0.017 Score=55.39 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999998654
No 141
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.70 E-value=0.018 Score=54.77 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998764
No 142
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.65 E-value=0.019 Score=54.57 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 346788999999999999999999999987643
No 143
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.63 E-value=0.019 Score=55.47 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999998764
No 144
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.62 E-value=0.02 Score=54.27 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345678999999999999999999999987643
No 145
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.02 Score=55.05 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.9
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34477889999999999999999999999976433
No 146
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.61 E-value=0.02 Score=55.02 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45778999999999999999999999987643
No 147
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.60 E-value=0.017 Score=55.68 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999998765
No 148
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.02 Score=55.82 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 149
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.068 Score=60.41 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-.++.|++|+|||+++..+|+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999864
No 150
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.59 E-value=0.02 Score=52.89 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67889999999999999999999999876543
No 151
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.042 Score=62.01 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=61.4
Q ss_pred ccccccccccc----ccCCCCCCCchHHHHHHhhcCCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccE
Q 011655 202 ALFPSVLGGTC----AIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRT 276 (480)
Q Consensus 202 ~l~PigkGqr~----~I~g~~g~GKT~L~~~ia~~~~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rt 276 (480)
.|.-.-+.+|+ ++.|++|+||||++..+++..+... .----||.- .--+++-+ +..-..
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C-~~C~~i~~---------------g~~~D~ 90 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC-DNCREIEQ---------------GRFVDL 90 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC-HHHHHHHc---------------CCCCCc
Confidence 33334444454 7889999999999999988643311 001134432 11112111 000011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH-HHHHHhhhcCCCCCC
Q 011655 277 TLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPAD 338 (480)
Q Consensus 277 vvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~-A~reis~~~ge~p~~ 338 (480)
+.+ +.++.--.+..+-. +.-+.|-..+|+.-++|+|...++.. |++.+=..++|||..
T Consensus 91 iei-daas~~~VddiR~l---i~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEI-DAASRTKVEDTREL---LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eee-cccccCCHHHHHHH---HHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 112 22211122222222 11222322468888899998887774 788888888998854
No 152
>PRK08118 topology modulation protein; Reviewed
Probab=94.57 E-value=0.02 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+|+.|+|++|+|||||+..|++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999987543
No 153
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.56 E-value=0.034 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.7
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++-+.|.|++|+|||+++..++++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3446789999999999999998764
No 154
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.55 E-value=0.014 Score=51.37 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccccc
Confidence 46789999999999999999999999876543
No 155
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.021 Score=55.50 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=29.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346889999999999999999999999987643
No 156
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.54 E-value=0.021 Score=53.58 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997643
No 157
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.54 E-value=0.021 Score=55.22 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678899999999999999999999998764
No 158
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.53 E-value=0.022 Score=52.21 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=23.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e 252 (480)
|+.|.|++++|||||+..|++. ++. .+.|-.+++.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~---g~~---~v~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR---GYP---VVPEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH---T-E---EE--TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc---CCe---EEeecHHHHHH
Confidence 6899999999999999999987 333 23777776543
No 159
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.52 E-value=0.02 Score=55.51 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3578899999999999999999999998754
No 160
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.021 Score=53.02 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999999988643
No 161
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.51 E-value=0.03 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=29.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+.+-+|.++.|.||+|+|||||+.++|.-...+
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 567899999999999999999999999865554
No 162
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.022 Score=55.34 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578899999999999999999999998764
No 163
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.023 Score=54.20 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6678899999999999999999999999987643
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.49 E-value=0.24 Score=53.83 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.|.-+.+.|+||+|||+++..+++..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998764
No 165
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.49 E-value=0.018 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|.|++|+||||++++|++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 166
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.022 Score=55.51 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998764
No 167
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.023 Score=55.58 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 168
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.43 E-value=0.023 Score=53.74 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.3
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.|.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444678899999999999999999999998764
No 169
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.024 Score=54.22 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998764
No 170
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.42 E-value=0.086 Score=49.12 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=34.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC-C-----------CCEEEEEeeCCchhHHHHHHHh
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS-N-----------SDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~-~-----------~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
.+|+-..|.|++|+|||+++.+|+... . ..-++|+-.-...+++.+.+..
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 379999999999999999999876431 1 1235566555555577776654
No 171
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.42 E-value=0.35 Score=47.77 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=89.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhc-CCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeC----C
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY-SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT----S 283 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~-~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t----~ 283 (480)
|+=+.|.|+.|+|||.|+++++-. ...+..|....-| ..+++|+..+-.+..++ .+-.+.-...++.. .
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe--~T~refi~qm~sl~ydv----~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE--LTVREFIKQMESLSYDV----SDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec--hhHHHHHHHHHhcCCCc----hHHHhcceeEEEEeccccc
Confidence 788999999999999999999865 2334444443333 34667776643333332 11223333344443 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCC
Q 011655 284 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLG 363 (480)
Q Consensus 284 d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~ 363 (480)
+.-...+..--. -+.|..+-.-+|| +++||++-++.--. ....-.+++.++++.
T Consensus 102 ~~~~~~~~~~L~---~l~~~~k~~~~dV-iIIDSls~~~~~~~-------------------~~~vl~fm~~~r~l~--- 155 (235)
T COG2874 102 NWGRRSARKLLD---LLLEFIKRWEKDV-IIIDSLSAFATYDS-------------------EDAVLNFMTFLRKLS--- 155 (235)
T ss_pred ccChHHHHHHHH---HHHhhHHhhcCCE-EEEecccHHhhccc-------------------HHHHHHHHHHHHHHH---
Confidence 222222211111 2333334344555 56799985442210 224456677777774
Q ss_pred CCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHH
Q 011655 364 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 405 (480)
Q Consensus 364 ~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~ 405 (480)
..|- |++-|| ..+.+.+.+..-.+++-|.++-|+-+
T Consensus 156 ---d~gK-vIilTv--hp~~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 156 ---DLGK-VIILTV--HPSALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred ---hCCC-EEEEEe--ChhhcCHHHHHHHHHhhheeEEEEhh
Confidence 2344 333344 44567788888889999999988743
No 172
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.42 E-value=0.024 Score=54.27 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999999999998764
No 173
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.022 Score=54.72 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999998764
No 174
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.39 E-value=0.025 Score=56.46 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=29.6
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
++.+..+.+|++++|.|++|+|||||+..|+....+
T Consensus 17 l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 17 LHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred hhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 333344889999999999999999999999876543
No 175
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.024 Score=55.32 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=29.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347788999999999999999999999998643
No 176
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.38 E-value=0.024 Score=55.24 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5688999999999999999999999987643
No 177
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.38 E-value=0.02 Score=50.38 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=24.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHh
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
+.+.+|+.++|.|++|+|||||+.++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 467789999999999999999999987
No 178
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.37 E-value=0.024 Score=54.32 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3678899999999999999999999998764
No 179
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.36 E-value=0.025 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=29.3
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3446777999999999999999999999988743
No 180
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.36 E-value=0.024 Score=54.01 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999999999987643
No 181
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.35 E-value=0.025 Score=54.02 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998764
No 182
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.34 E-value=0.021 Score=54.13 Aligned_cols=28 Identities=18% Similarity=0.168 Sum_probs=25.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHh
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
=+.+.+|++++|.|++|+|||||+..|.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999999999999885
No 183
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.33 E-value=0.2 Score=49.74 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=23.4
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+...+..+.+.||||+|||+++..+++.
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3455667889999999999999999874
No 184
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.30 E-value=0.025 Score=55.92 Aligned_cols=34 Identities=35% Similarity=0.381 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456789999999999999999999999997643
No 185
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.30 E-value=0.026 Score=54.50 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3467889999999999999999999999976443
No 186
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.30 E-value=0.026 Score=53.76 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.3
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|++++|+|++|+|||||+..|+....
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446788999999999999999999999987643
No 187
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.29 E-value=0.067 Score=54.99 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.9
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
..+.|.|++|+|||+|+..+++..+.++
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 4588999999999999999999766543
No 188
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.27 E-value=0.028 Score=52.12 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678899999999999999999999998764
No 189
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.27 E-value=0.026 Score=53.76 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=28.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35788999999999999999999999987643
No 190
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.27 E-value=0.026 Score=55.26 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446788999999999999999999999987643
No 191
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.27 E-value=0.026 Score=52.74 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999999987643
No 192
>PRK10908 cell division protein FtsE; Provisional
Probab=94.26 E-value=0.026 Score=54.32 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999999999876543
No 193
>PRK07261 topology modulation protein; Provisional
Probab=94.26 E-value=0.028 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.7
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|+.|+|++|+|||||+.+|++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998764
No 194
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.094 Score=61.00 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEE-EEEeeCCc--hhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTV-VYVGCGER--GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 288 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~-V~~~iGer--~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~ 288 (480)
.+|.|++|+||||++..+++....... -.-.||.- ..++.+.. ... ++..+.++.--.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~------------------~~D-viEidAas~~kV 101 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR------------------FVD-LIEVDAASRTKV 101 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC------------------Cce-EEEeccccccCH
Confidence 478999999999999999987543210 00123321 11111100 001 122222221112
Q ss_pred HHHHHHHHHHHHHHHHHHCCCceeeecccchHHHH-HHHHHhhhcCCCCCCC------CCcchhHHHHHHHHHhhcCcc
Q 011655 289 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPADS------GYPAYLAARLASFYERAGKVK 360 (480)
Q Consensus 289 ~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~-A~reis~~~ge~p~~~------gyp~~l~s~l~~l~ERag~~~ 360 (480)
...+-.. .-..|....|+..++|+|...++.. |++.+=..++|||..- .++..+ +..|+-|+-.++
T Consensus 102 DdIReLi---e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL---l~TIlSRCq~f~ 174 (944)
T PRK14949 102 DDTRELL---DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL---PVTVLSRCLQFN 174 (944)
T ss_pred HHHHHHH---HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc---hHHHHHhheEEe
Confidence 2222111 1122222468889999999988854 8888888888888642 123332 344556666553
No 195
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.022 Score=55.87 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57889999999999999999999999864
No 196
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.023 Score=55.71 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3678899999999999999999999998764
No 197
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.23 E-value=0.027 Score=54.87 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999999999987643
No 198
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.21 E-value=0.027 Score=53.92 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+.-.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678899999999999999999999998764
No 199
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.21 E-value=0.028 Score=55.08 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 200
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.027 Score=55.90 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999998764
No 201
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.21 E-value=0.026 Score=54.86 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34678899999999999999999999998764
No 202
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.17 E-value=0.024 Score=55.04 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999999999875
No 203
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.17 E-value=0.029 Score=52.09 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 6678999999999999999999999987643
No 204
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.16 E-value=0.29 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+++.|+||||||+|+..+++..+..
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCCC
Confidence 8899999999999999999986654
No 205
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.025 Score=55.61 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=28.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4778899999999999999999999998764
No 206
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.027 Score=56.03 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346788999999999999999999999987643
No 207
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.028 Score=54.60 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566789999999999999999999999998754
No 208
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.14 E-value=0.028 Score=54.23 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678899999999999999999999998653
No 209
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.13 E-value=0.027 Score=56.00 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|++++|.|++|+|||||+..|+....
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6788999999999999999999999987643
No 210
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.12 E-value=0.029 Score=53.76 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999987643
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.11 E-value=0.029 Score=53.97 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|+.-.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998753
No 212
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.11 E-value=0.029 Score=54.66 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999999987643
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.09 E-value=0.029 Score=54.48 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34678899999999999999999999998764
No 214
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.07 E-value=0.03 Score=55.07 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999999987643
No 215
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.025 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=26.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999999999864
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.029 Score=56.02 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446888999999999999999999999987643
No 217
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.03 Score=54.15 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34568899999999999999999999998764
No 218
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.04 E-value=0.03 Score=58.74 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=32.2
Q ss_pred ccceec-cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 196 GQRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 196 GIraID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+..++| .=+.|.+|.-+.+.||+|||||||+.+||.-.
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555 56789999999999999999999999998753
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.026 Score=55.30 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45577889999999999999999999999864
No 220
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.02 E-value=0.031 Score=54.12 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34678899999999999999999999998754
No 221
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.02 E-value=0.031 Score=54.46 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998764
No 222
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.01 E-value=0.032 Score=54.02 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=26.8
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+-+|+.++|.|++|+|||||+..|+....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567899999999999999999999997643
No 223
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.00 E-value=0.031 Score=53.66 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 578899999999999999999999998754
No 224
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.027 Score=55.65 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3668899999999999999999999998643
No 225
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.1 Score=54.65 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.||+|+||||++..+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998864
No 226
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.97 E-value=0.032 Score=56.75 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+.+|+.-..
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 227
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.032 Score=54.17 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999999987643
No 228
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.96 E-value=0.028 Score=55.96 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.7
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999874
No 229
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.95 E-value=0.033 Score=54.75 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3467889999999999999999999999876433
No 230
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.95 E-value=0.41 Score=42.17 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHHHHHHhhcCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.|+||+||||++.++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 45789999999999999997654
No 231
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.95 E-value=0.034 Score=52.99 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788999999999999999999999987643
No 232
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.94 E-value=0.033 Score=53.64 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999999987643
No 233
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.93 E-value=0.032 Score=54.49 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35788999999999999999999999997643
No 234
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.028 Score=55.08 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=27.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999964
No 235
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.91 E-value=0.033 Score=55.55 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346788999999999999999999999987643
No 236
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.90 E-value=0.034 Score=53.59 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 677899999999999999999999998764
No 237
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.87 E-value=0.034 Score=55.51 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457888999999999999999999999987643
No 238
>PRK08181 transposase; Validated
Probab=93.86 E-value=0.059 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.5
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++.+.|+|++|+|||.|+..|++.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHH
Confidence 47888999999999999999999875
No 239
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.85 E-value=0.33 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
++|.|++|+|||+|+..+++..+...
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 89999999999999999999876543
No 240
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.03 Score=54.91 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=27.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 366889999999999999999999999864
No 241
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.83 E-value=0.035 Score=53.88 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999999987654
No 242
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.035 Score=55.31 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446788999999999999999999999987643
No 243
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.82 E-value=0.49 Score=43.64 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=29.4
Q ss_pred cccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
+++.|++|+||||++..++... ...-++++-++-+..+..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHH
Confidence 5678999999999999887642 2223556666655545545443
No 244
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.034 Score=55.64 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 245
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.81 E-value=0.034 Score=58.15 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|+|++|+|||||+.+|+....
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457788999999999999999999999997643
No 246
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.13 Score=56.51 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+-.++.|++|+||||++..+|+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998864
No 247
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.035 Score=56.07 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999876443
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.038 Score=51.28 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+..+|.|++|+|||||+..|+....
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6788999999999999999999999987643
No 249
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.79 E-value=0.037 Score=53.26 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 336888999999999999999999999987643
No 250
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.79 E-value=0.19 Score=47.31 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=31.1
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchh-HHHHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGN-EMAEVL 254 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~-Ev~e~~ 254 (480)
.+.|.|++|+|||+++..++...+.. ++|.+.+...+ |+.+=+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~-~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ-VLYIATAQPFDDEMAARI 46 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC-cEeCcCCCCChHHHHHHH
Confidence 57899999999999999998765433 56777776543 343433
No 251
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.76 E-value=0.036 Score=54.97 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998764
No 252
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.04 Score=57.49 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=31.2
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+|.=+.+-+|+.++|+|++|+|||||+..|+....
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 47778899999999999999999999999987643
No 253
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.75 E-value=0.036 Score=56.35 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 254
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.75 E-value=0.14 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+++.|++|+|||+++..+++.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 55889999999999999998876
No 255
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.033 Score=54.85 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=27.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 6788999999999999999999999987543
No 256
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.73 E-value=0.036 Score=55.28 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346788999999999999999999999987643
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.03 Score=53.53 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35778999999999999999999999987643
No 258
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.72 E-value=0.033 Score=53.01 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999999999876
No 259
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.72 E-value=0.27 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCchHHHHHHhh
Q 011655 209 GGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
|.-..|.|++|+|||+|+.++|.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 44467899999999999999875
No 260
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.71 E-value=0.04 Score=52.46 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=27.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3677899999999999999999999998753
No 261
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.71 E-value=0.037 Score=55.26 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|.++||+|.+|+|||||++.|+.-.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 345789999999999999999999999998754
No 262
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.70 E-value=0.16 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=22.6
Q ss_pred ccc-ccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGG-TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGq-r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++ -+.|.|++|+|||||+..+++...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 444 578999999999999999988754
No 263
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.037 Score=55.82 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 264
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.039 Score=55.14 Aligned_cols=31 Identities=35% Similarity=0.414 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6788999999999999999999999987643
No 265
>PRK12377 putative replication protein; Provisional
Probab=93.67 E-value=0.11 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+-+.|+|++|+|||.|+..|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998863
No 266
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.66 E-value=0.033 Score=55.01 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999999754
No 267
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.66 E-value=0.038 Score=54.76 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998764
No 268
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.037 Score=54.34 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36788999999999999999999999987643
No 269
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.64 E-value=0.04 Score=50.01 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 46779999999999999999999999886533
No 270
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.62 E-value=0.041 Score=54.71 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4447789999999999999999999999987643
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.041 Score=53.35 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344578899999999999999999999998764
No 272
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.61 E-value=0.04 Score=54.59 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=28.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35678999999999999999999999987654
No 273
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.61 E-value=0.035 Score=57.99 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|.-+.|+||+|||||||+.+||.-
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999999999864
No 274
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.61 E-value=0.12 Score=51.09 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc----CCCCEEEEEeeCCchhH
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY----SNSDTVVYVGCGERGNE 249 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~dv~V~~~iGer~~E 249 (480)
...+.++|.|.+|+|||+|+.++++. .+-|.++++-.+.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 34566889999999999999998865 23356777766655433
No 275
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.071 Score=56.06 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=36.7
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEE-------eeCCchhHHHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYV-------GCGERGNEMAEVLM 255 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~-------~iGer~~Ev~e~~~ 255 (480)
+++.||||||||.|+...|+++++..+=++ .|||..|=|+|+++
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~ 238 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFE 238 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHH
Confidence 788999999999999999999888544333 48899998888875
No 276
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.60 E-value=0.11 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+++.||||+|||+++..+++...
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhc
Confidence 389999999999999999998753
No 277
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.59 E-value=0.041 Score=53.71 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=27.4
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998763
No 278
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.038 Score=53.71 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 678899999999999999999999998753
No 279
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.59 E-value=0.041 Score=53.89 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34678899999999999999999999998754
No 280
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.036 Score=55.20 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3678899999999999999999999998754
No 281
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.036 Score=57.30 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=30.7
Q ss_pred ceeccc-cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raID~l-~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|.+ +.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 455554 589999999999999999999999998764
No 282
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.55 E-value=0.042 Score=54.27 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999999987644
No 283
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.041 Score=57.67 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 34578889999999999999999999999876433
No 284
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.53 E-value=0.041 Score=55.48 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 285
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.53 E-value=0.18 Score=51.09 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.9
Q ss_pred ccc-CCCCCCCchHHHHHHhhcCCCCEE
Q 011655 212 CAI-PGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 212 ~~I-~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
+.+ .|++|+|||+++..++++.+.++.
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 444 699999999999999988666543
No 286
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.53 E-value=0.044 Score=51.90 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999999998764
No 287
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.52 E-value=0.16 Score=50.77 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=30.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCC-CEEEEEeeCCchhHHHHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNS-DTVVYVGCGERGNEMAEVL 254 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~-dv~V~~~iGer~~Ev~e~~ 254 (480)
|+.|.|++|+|||+|+..|...... .-.||....+...+..+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i 59 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYI 59 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhc
Confidence 7889999999999999987765322 2245555555555554443
No 288
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.037 Score=54.39 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=26.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999875
No 289
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.041 Score=57.55 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|+|++|+|||||+..|+.-..
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 446788999999999999999999999987543
No 290
>PRK14974 cell division protein FtsY; Provisional
Probab=93.52 E-value=0.22 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++..+++.|++|+||||++..+|.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999888765
No 291
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.037 Score=54.23 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=27.9
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34467889999999999999999999999853
No 292
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.038 Score=54.28 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=27.2
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+-+|+.++|.|++|+|||||+..|+.-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999999999998753
No 293
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.045 Score=53.20 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=28.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999998753
No 294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.043 Score=54.77 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 336788999999999999999999999987643
No 295
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.50 E-value=0.16 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=24.0
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|.-+.+.|++|+|||.|+..|++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 88889999999999999999998864
No 296
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.49 E-value=0.045 Score=54.21 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=26.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46689999999999999999999998764
No 297
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.044 Score=52.26 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+| .++|.|++|+|||||+..|+...
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3567788 99999999999999999998753
No 298
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.48 E-value=0.045 Score=51.94 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678899999999999999999999998765
No 299
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.037 Score=54.31 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhh
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 346788999999999999999999999975
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.46 E-value=0.036 Score=54.34 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 66889999999999999999999999874
No 301
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.043 Score=53.88 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=28.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+..+|.|++|+|||||+..|+....
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35688999999999999999999999987643
No 302
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.039 Score=54.67 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3678899999999999999999999998653
No 303
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.43 E-value=0.043 Score=57.40 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 456788999999999999999999999997643
No 304
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.42 E-value=0.045 Score=52.41 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.3
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5568899999999999999999999999987643
No 305
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.41 E-value=0.38 Score=47.41 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=18.0
Q ss_pred ccccCCCCCCCchHHHHHHh
Q 011655 211 TCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia 230 (480)
.++|.|+||+||||++..++
T Consensus 14 ~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred EEEEECCCCCCHHHHHHhcC
Confidence 47899999999999999886
No 306
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.41 E-value=0.16 Score=55.55 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=33.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEE-------EeeCCchhHHHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVY-------VGCGERGNEMAEVLM 255 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~-------~~iGer~~Ev~e~~~ 255 (480)
+++.||||||||.++..||+..+...+.+ ..+|+....++++++
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~ 312 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIR 312 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHH
Confidence 88999999999999999999866543221 246777777777765
No 307
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.04 Score=54.06 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34678899999999999999999999998754
No 308
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.37 E-value=0.047 Score=54.53 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344778899999999999999999999998754
No 309
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.042 Score=53.90 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=27.4
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 578899999999999999999999998763
No 310
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.041 Score=54.48 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999998753
No 311
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.041 Score=54.07 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=27.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3367889999999999999999999999865
No 312
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.047 Score=54.26 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 336788999999999999999999999997643
No 313
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.35 E-value=0.042 Score=54.67 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3467889999999999999999999999853
No 314
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.33 E-value=0.05 Score=52.20 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678899999999999999999999998763
No 315
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.31 E-value=0.049 Score=53.77 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346888999999999999999999999987643
No 316
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.30 E-value=0.042 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33467889999999999999999999999875
No 317
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.30 E-value=0.54 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|-.+.|.|+||||||+++..+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 445889999999999999877664
No 318
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.049 Score=53.14 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|++.+|.|++|+|||||+..|+....
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36788999999999999999999999987643
No 319
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.046 Score=55.25 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 556788999999999999999999999998764
No 320
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.28 E-value=0.049 Score=52.86 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999999999987643
No 321
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.051 Score=49.45 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.8
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|.-+.+.+|+..+|.|++|+|||||+..|+.....
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44567889999999999999999999999876543
No 322
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.27 E-value=0.042 Score=53.12 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.-+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 345788999999999999999999999987643
No 323
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.27 E-value=0.049 Score=54.78 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998754
No 324
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.044 Score=53.69 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999999998654
No 325
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.043 Score=55.05 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467889999999999999999999999854
No 326
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.25 E-value=0.06 Score=50.68 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.7
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.|+.+.|.|++|+|||||+.+|+.....+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 37789999999999999999998865443
No 327
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.044 Score=53.93 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=26.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 67889999999999999999999999853
No 328
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.043 Score=54.26 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33678899999999999999999999998753
No 329
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.044 Score=54.78 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999999998754
No 330
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.23 E-value=0.096 Score=52.34 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=40.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC--CEEEEEe---eCCchhHHHHHHHh
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG---CGERGNEMAEVLMD 256 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~--dv~V~~~---iGer~~Ev~e~~~~ 256 (480)
-+.|-+|+.+.|+|++|+|||||+..|..-.+. .-+.+-. ++.++.|++++...
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 357889999999999999999999999875432 1233333 67778888887754
No 331
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.049 Score=53.70 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=27.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999999999999999998753
No 332
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.21 Score=55.84 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=85.1
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE-------EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT-------VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 284 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv-------~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d 284 (480)
+++-||||||||.|+..||++..... +|=..-||.-..++|++++ +....-++||.---|
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~-------------A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ-------------AKSNAPCIVFIDEID 292 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH-------------HhccCCeEEEeeccc
Confidence 78899999999999999999864432 4556779999999998875 122345677755433
Q ss_pred CCH---------HHHHHHHHHHHHHHHHHHH--CCCceeeec-----ccc----hHHHHHHHHHhhh-------------
Q 011655 285 MPV---------AAREASIYTGITIAEYFRD--MGYNVSMMA-----DST----SRWAEALREISGR------------- 331 (480)
Q Consensus 285 ~p~---------~~r~~a~~~a~tiAEyfrd--~G~dVlll~-----Dsl----tr~a~A~reis~~------------- 331 (480)
.=. ++|..++-..+.+-|--+. .|+.||||- |++ -|-.+--|||.+-
T Consensus 293 AI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 293 AITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHH
Confidence 222 3344455555555555443 589999974 443 2333333444221
Q ss_pred ----cCCCC------CCCCCcchhHHHHHHHHHhhcCcc
Q 011655 332 ----LAEMP------ADSGYPAYLAARLASFYERAGKVK 360 (480)
Q Consensus 332 ----~ge~p------~~~gyp~~l~s~l~~l~ERag~~~ 360 (480)
+.-.+ -.+--|||+-++|..|.-+|+.+.
T Consensus 373 ~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 373 ICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred HHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 11111 012357788899999988888754
No 333
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.18 Score=57.02 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=66.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCC-----E-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSD-----T-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 284 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~d-----v-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d 284 (480)
-.++.|++|+||||++..+++..+.+ - .-.-.||+- +.-+++-. +.....+ ..+.++
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C-~sC~~I~a---------------G~hpDvi-EIdAas 102 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC-RACTEIDA---------------GRFVDYI-EMDAAS 102 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc-HHHHHHHc---------------CCCCcce-Eecccc
Confidence 36889999999999999999864321 0 111134432 22222211 0011111 122222
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHH-HHHHHHhhhcCCCCCCCCCcc---hhHHHHHHHHHhhcCcc
Q 011655 285 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA-EALREISGRLAEMPADSGYPA---YLAARLASFYERAGKVK 360 (480)
Q Consensus 285 ~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a-~A~reis~~~ge~p~~~gyp~---~l~s~l~~l~ERag~~~ 360 (480)
.--....+.. +....|-...|+.-++|+|...++. .+.|.+=..++|||..--|=- +...-+..+.-|+-.++
T Consensus 103 ~~gVDdIReL---ie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~ 179 (700)
T PRK12323 103 NRGVDEMAQL---LDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 179 (700)
T ss_pred cCCHHHHHHH---HHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcc
Confidence 2122222221 1122222235777778888877664 577777788899886532211 23334556677776654
No 334
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.18 E-value=0.22 Score=46.30 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+|.-+.+.|++|+||||++..+++...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 356678899999999999999988754
No 335
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.051 Score=54.51 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6888999999999999999999999987643
No 336
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.17 E-value=0.053 Score=54.05 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3446788999999999999999999999987643
No 337
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.16 E-value=0.028 Score=52.89 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=22.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.++.+.|.|++|+|||+|+..+++..
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 456889999999999999999988875
No 338
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.044 Score=56.66 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 35678899999999999999999999998764
No 339
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.045 Score=54.96 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 445678899999999999999999999998754
No 340
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.051 Score=54.44 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334788899999999999999999999998764
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.14 Score=57.53 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=33.7
Q ss_pred HCCCceeeecccchHHHH-HHHHHhhhcCCCCCCCCCcc---hhHHHHHHHHHhhcCcc
Q 011655 306 DMGYNVSMMADSTSRWAE-ALREISGRLAEMPADSGYPA---YLAARLASFYERAGKVK 360 (480)
Q Consensus 306 d~G~dVlll~Dsltr~a~-A~reis~~~ge~p~~~gyp~---~l~s~l~~l~ERag~~~ 360 (480)
-+|+.-++++|+..++.. +++.+-..++|||..--|=- +....+..+..|+-.++
T Consensus 121 ~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~ 179 (618)
T PRK14951 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFN 179 (618)
T ss_pred ccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeee
Confidence 457667788888877655 77777788888875422110 12223555677776554
No 342
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.12 E-value=0.052 Score=54.87 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=28.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 37888999999999999999999999987643
No 343
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=93.11 E-value=0.34 Score=51.81 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=35.1
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCCE-EEEEeeCCchhHHHH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAE 252 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv-~V~~~iGer~~Ev~e 252 (480)
|+.-..||.++|-|-||+|||++..++.+..+.+- +.|+.-=-...-|.+
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v~YISTRVd~d~vy~ 54 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHGNVMYISTRVDQDTVYE 54 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhccCCeEEEEeccCHHHHHH
Confidence 67788999999999999999999998766533222 345544334444443
No 344
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.052 Score=54.65 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 3578899999999999999999999998764
No 345
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.10 E-value=0.17 Score=52.71 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=27.7
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC---CC-EEEEEeeCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN---SD-TVVYVGCGE 245 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~---~d-v~V~~~iGe 245 (480)
++++.+.|.|++|+|||+++..++++.. .+ .++|+-|-+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 3456689999999999999999876531 12 356665543
No 346
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.08 E-value=0.054 Score=54.27 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455678899999999999999999999998764
No 347
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.08 E-value=0.054 Score=54.90 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678899999999999999999999998764
No 348
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.07 E-value=0.055 Score=55.35 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+-+|+..+|.|+.|+|||||+..|+....++
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3678899999999999999999999998765443
No 349
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.047 Score=55.70 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||++.|+...
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34678899999999999999999999998653
No 350
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.04 E-value=0.054 Score=53.42 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.7
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5677999999999999999999999987643
No 351
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.04 E-value=0.049 Score=54.90 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+++-+|.-.+|.||.|+|||||+..|++-..
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456888999999999999999999999988543
No 352
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.049 Score=54.46 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=27.3
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 366789999999999999999999999866
No 353
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.18 Score=55.68 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++.|++|+||||++..+++..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998864
No 354
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.01 E-value=0.044 Score=56.78 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3678899999999999999999999998754
No 355
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.01 E-value=0.059 Score=51.88 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999764
No 356
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.056 Score=54.20 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447788999999999999999999999987643
No 357
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.056 Score=54.33 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445788999999999999999999999998764
No 358
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.99 E-value=0.056 Score=56.47 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+..+|+|++|+|||||+..|+.-...
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999876543
No 359
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.99 E-value=0.049 Score=54.39 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=27.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999865
No 360
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.96 E-value=0.051 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.+.|.||+|+|||||+..|..=
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 57899999999999999999999988653
No 361
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.95 E-value=0.5 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
-++|.|+||||||+|+..||+.....
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 38899999999999999999986654
No 362
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.05 Score=54.94 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34468889999999999999999999999874
No 363
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=92.92 E-value=0.05 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=30.8
Q ss_pred cee-ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVL-DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raI-D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 344 456789999999999999999999999998754
No 364
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.92 E-value=0.058 Score=58.80 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|++++|.|++|+|||||+..|.+....
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4467899999999999999999999999876433
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.92 E-value=0.05 Score=52.77 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=27.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++-+||.++|+|..|+|||||+.||+.-
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 468899999999999999999999999764
No 366
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.057 Score=56.78 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34678899999999999999999999998754
No 367
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=0.33 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+-+++.||+|+|||+++..+|+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4667899999999999999999874
No 368
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.90 E-value=0.05 Score=53.10 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999999876
No 369
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.064 Score=51.34 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+ +.++|.|++|+|||||+..|+....
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 78889999 9999999999999999999987643
No 370
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.86 E-value=0.059 Score=55.19 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45788999999999999999999999998764
No 371
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.86 E-value=0.061 Score=53.96 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 372
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.85 E-value=0.054 Score=54.00 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3667899999999999999999999998754
No 373
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.059 Score=54.54 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=28.2
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.|-+|+.++|.|++|+|||||+..|+....
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6788999999999999999999999987643
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.84 E-value=0.053 Score=51.28 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=26.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999999863
No 375
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.82 E-value=0.06 Score=54.79 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+..+|.|+.|+|||||+.+|+.-.
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998754
No 376
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.80 E-value=0.062 Score=54.07 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+-+|+..+|.|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 37788999999999999999999999987643
No 377
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.78 E-value=0.055 Score=53.72 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 344568899999999999999999999998653
No 378
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.78 E-value=0.063 Score=55.90 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
=+.+.+|+.++|.|+.|+|||||+.+|+.....
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 368899999999999999999999999876433
No 379
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.78 E-value=0.22 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.9
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+-+++.|++|+|||+++..+++..
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 347899999999999999998863
No 380
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.77 E-value=0.055 Score=54.66 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=27.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 578899999999999999999999998653
No 381
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.062 Score=60.49 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|++++|+|+.|+|||||+..|+....
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446889999999999999999999999987643
No 382
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.068 Score=58.66 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
-+++..|+|+.|.|.+|+|||||++.|+++-+.+
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 4689999999999999999999999999864443
No 383
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=92.75 E-value=0.061 Score=56.82 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45788999999999999999999999998754
No 384
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.74 E-value=0.2 Score=55.17 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-.++.|++|+|||+++..+|+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999864
No 385
>CHL00181 cbbX CbbX; Provisional
Probab=92.74 E-value=0.79 Score=46.71 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=23.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-.+|-.+.+.|+||||||+++..+++.
T Consensus 55 ~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 55 SSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345667889999999999999998764
No 386
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.74 E-value=0.4 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.1
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|.|.+|+|||||+..|+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998764
No 387
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.71 E-value=0.054 Score=53.37 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 334678899999999999999999999998653
No 388
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.70 E-value=0.066 Score=53.79 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999999987643
No 389
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.70 E-value=0.058 Score=53.42 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=27.4
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 678899999999999999999999998753
No 390
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.055 Score=55.93 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=30.3
Q ss_pred ceecc-ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|- =+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34433 4789999999999999999999999998753
No 391
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=92.66 E-value=0.13 Score=54.99 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.1
Q ss_pred cceeccc-cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 197 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 197 IraID~l-~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++++|.+ +++-+||.+||+|.+|+|||||-.+|.+-.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 5777765 689999999999999999999999987653
No 392
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.64 E-value=0.066 Score=53.70 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 578899999999999999999999998764
No 393
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.62 E-value=0.076 Score=55.39 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=30.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6668899999999999999999999999987643
No 394
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.62 E-value=0.11 Score=55.30 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=48.7
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC---CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~---~~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++- +.+|+=+.|-|.||+|||+++.+++.+. +..-++|.-.-+...++.+
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 347899999999874 7899999999999999999999987652 2334566677777777654
No 395
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.59 E-value=0.099 Score=51.74 Aligned_cols=60 Identities=27% Similarity=0.318 Sum_probs=42.9
Q ss_pred cccccceecccc-ccccccccccCCCCCCCchHHHHHHhhcC--C-CCEEEEEeeCCchhHHHH
Q 011655 193 LLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 193 l~TGIraID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~-~dv~V~~~iGer~~Ev~e 252 (480)
+.||++.+|-++ -+.+|+=..|-|.||+|||+++.+||.+. + ..-++|.-.....+++..
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 459999999887 57788888999999999999999988753 2 234566666656666544
No 396
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.56 E-value=0.067 Score=56.53 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|+|++|+|||||+..|+.-..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346788999999999999999999999987643
No 397
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.54 E-value=0.063 Score=54.23 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|-+|++++|+|++|+|||||+..|++..
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 689999999999999999999999998654
No 398
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.51 E-value=0.07 Score=55.49 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346788999999999999999999999987643
No 399
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.50 E-value=0.06 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|+||+||||++..|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999986
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.43 E-value=0.071 Score=52.79 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.5
Q ss_pred cee-ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 198 RVL-DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 198 raI-D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++ |.=+.+-+|.-+.|.||+|+|||||+..|..-
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444 44578999999999999999999999998754
No 401
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.43 E-value=0.066 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.-..
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 336788999999999999999999999987643
No 402
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.41 E-value=0.51 Score=43.72 Aligned_cols=29 Identities=34% Similarity=0.293 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.-+|.-+.|.|.+|+||||++..|++..
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999998754
No 403
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.40 E-value=0.067 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=27.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 34678899999999999999999999997653
No 404
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.40 E-value=0.11 Score=50.51 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=28.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+++-.|+++.|.|++|+|||||+..||...
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 44567789999999999999999999999864
No 405
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.39 E-value=0.42 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.7
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+|+.+++.|++|+||||++..||..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999998765
No 406
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.37 E-value=0.072 Score=59.84 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|++++|+|+.|+|||||+..|+.....
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4467889999999999999999999999876433
No 407
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.37 E-value=0.076 Score=55.86 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999999999998753
No 408
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=0.27 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.7
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++.||+|+||||++..+|+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998875
No 409
>PRK14530 adenylate kinase; Provisional
Probab=92.30 E-value=0.085 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.|-++.|+|+||+||||++..|++..+
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998654
No 410
>PRK14531 adenylate kinase; Provisional
Probab=92.25 E-value=0.086 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|+.|+|+||+||||++..|++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999864
No 411
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.23 E-value=0.19 Score=57.39 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=25.8
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
-.+.-+++.|++|+|||+|+..|++..+..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 3456699999999999999999999876543
No 412
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.15 Score=51.73 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=36.2
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCEEEEE-------eeCCchhHHHHHHH
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV-------GCGERGNEMAEVLM 255 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~-------~iGer~~Ev~e~~~ 255 (480)
-+-++++||||||||+|+...|++..+..+-++ -.||.+|-|++++.
T Consensus 189 prgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfr 242 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFR 242 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHH
Confidence 345789999999999999999998766543222 35788888888775
No 413
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.15 E-value=0.076 Score=53.77 Aligned_cols=60 Identities=23% Similarity=0.456 Sum_probs=42.9
Q ss_pred cceec-cccccccccccccCCCCCCCchHHHHHHhhcCCC--CEEEEEeeC-------CchhHHHHHHHh
Q 011655 197 QRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG-------ERGNEMAEVLMD 256 (480)
Q Consensus 197 IraID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~--dv~V~~~iG-------er~~Ev~e~~~~ 256 (480)
++++| .=+.|-+|..+||+|.+|+|||||...|.+-..+ +-+.|-+-. ++-+.+.++++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~ 95 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK 95 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH
Confidence 57777 5689999999999999999999999998875432 335555321 334446666654
No 414
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.14 E-value=0.059 Score=46.22 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++|.|.+|+|||||+..|++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999864
No 415
>PRK06921 hypothetical protein; Provisional
Probab=92.14 E-value=0.19 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.-+.++|++|+|||.|+..|++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 46779999999999999999998863
No 416
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.086 Score=53.10 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447788999999999999999999999987643
No 417
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.10 E-value=0.49 Score=49.07 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=53.0
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHH
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 288 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~ 288 (480)
++++.|.|++|+|||||+..|++..+..+ +-|.+|+. +++. . .+...+ +.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~-----v~E~~R~~---~~~~------~---~~~~~l-------------~~ 211 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS-----AWEYAREY---VEEK------L---GGDEAL-------------QY 211 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EeehhHHH---HHHh------c---CCCccc-------------CH
Confidence 78999999999999999999998755533 33445543 3320 0 001110 11
Q ss_pred HHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHH
Q 011655 289 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 328 (480)
Q Consensus 289 ~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~rei 328 (480)
..+.-...+...+++.+-+..+-++++|.-.--..++-+.
T Consensus 212 ~d~~~i~~g~~~~~~~~~~~a~~iif~D~~~~~t~~y~~~ 251 (325)
T TIGR01526 212 SDYAQIALGQQRYIDYAVRHAHKIAFIDTDFITTQVFAKQ 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCChHHHHHHHHH
Confidence 1133344444445555544566788888765555555553
No 418
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.09 E-value=0.086 Score=54.38 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 778899999999999999999999998764
No 419
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.06 E-value=0.095 Score=51.35 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.-+.|..|+-+.+.||+|||||||++-+|....
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4556789999999999999999999999887543
No 420
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.075 Score=55.07 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=28.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33578899999999999999999999998754
No 421
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.06 E-value=0.082 Score=57.46 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998754
No 422
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.03 E-value=0.083 Score=46.83 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=27.9
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHH
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
+.+.|++|+|||+|+..+++..+..+ +..-+. ...+..+++-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~-~~i~~~-~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV-IRINCS-SDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE-EEEE-T-TTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce-EEEEec-ccccccccee
Confidence 57899999999999999998774433 223333 3334446553
No 423
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.02 E-value=0.09 Score=57.91 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.8
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|.=+.+-+||+++|.|++|+|||||+..|+....+
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 34456789999999999999999999999887543
No 424
>PLN03073 ABC transporter F family; Provisional
Probab=91.99 E-value=0.074 Score=60.82 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhh
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
|.=+.|..|+|++|+|+.|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4567899999999999999999999999985
No 425
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=91.99 E-value=0.084 Score=56.38 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|++|+|||||+++|+...
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 678899999999999999999999998764
No 426
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.96 E-value=0.27 Score=56.52 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+++.|++|+||||++..+++..+
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 357889999999999999998643
No 427
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=91.96 E-value=0.086 Score=55.53 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+..+|.|++|+|||||+.+|+....+
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 4467889999999999999999999999876543
No 428
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.94 E-value=0.092 Score=57.47 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999999998754
No 429
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.92 E-value=0.082 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.6
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|.|++|+|||||+..|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6778999999999999999999854
No 430
>PRK08233 hypothetical protein; Provisional
Probab=91.92 E-value=0.13 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.-++|.|++|+|||||+..|+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567899999999999999999865
No 431
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.89 E-value=0.084 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.|+|++|+|||+|+..++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999998754
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.88 E-value=0.087 Score=49.82 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.0
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-+|+-++|.|++|+|||||+..|++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999988654
No 433
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.88 E-value=0.078 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|..++|.|++|+|||||+..|+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999998754
No 434
>PRK06217 hypothetical protein; Validated
Probab=91.87 E-value=0.11 Score=48.85 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred cccccCCCCCCCchHHHHHHhhcCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.|+.|.|.+|+|||||+.+|++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 435
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.80 E-value=0.097 Score=57.77 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+..|++++|.|++|+|||||+..|+...
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999999998764
No 436
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.27 Score=52.66 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=42.7
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC-CCCEEEEEeeCCchhH
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-NSDTVVYVGCGERGNE 249 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~-~~dv~V~~~iGer~~E 249 (480)
+.||+.-+|-.+- +.+|+-++|=|+||.|||||+.+++.+. ...-++|+.=-|....
T Consensus 75 i~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~Q 134 (456)
T COG1066 75 ISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQ 134 (456)
T ss_pred ccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHH
Confidence 7899999998774 5799999999999999999999987653 2334566543333333
No 437
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.77 E-value=0.14 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.2
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++..++|.|++|+|||||+..|++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998865
No 438
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.77 E-value=0.1 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+-||+-.+|.||+|+|||||+..|.....++
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 3678899999999999999999999998775443
No 439
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.76 E-value=0.49 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+++.+.|.|++|+|||+++..+.++
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988764
No 440
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.13 Score=50.64 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=31.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.-+..-+|+=.||+|+.|+||||++.+|+.-..++
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 667888999999999999999999999998765443
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.74 E-value=0.097 Score=57.85 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.-+.+-.|+|+|++|..|+|||||+..|+....
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 4567899999999999999999999999987643
No 442
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.73 E-value=0.18 Score=56.98 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
..++...|+.++|.||+|+||||++..+++..
T Consensus 103 ~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 103 QVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455667779999999999999999998854
No 443
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.72 E-value=0.16 Score=49.29 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=38.7
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC--C-CCEEEEEeeCCchhHHHHHH
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEVL 254 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~--~-~dv~V~~~iGer~~Ev~e~~ 254 (480)
+.+|+-+.|-|+||+|||+++.+++.+. + ..-++|.-.-+..+++.+-+
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 6789999999999999999999876542 2 33478888888888777633
No 444
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.72 E-value=0.086 Score=57.49 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4467889999999999999999999999886
No 445
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=91.63 E-value=0.1 Score=56.51 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=29.7
Q ss_pred eecc-ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 199 VLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 199 aID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++- =+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4433 4688999999999999999999999998754
No 446
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.63 E-value=0.094 Score=50.43 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+-+-+|++++|+|++|+|||||+.-+|.--
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 347889999999999999999999988643
No 447
>PRK09183 transposase/IS protein; Provisional
Probab=91.62 E-value=0.077 Score=53.15 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=25.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+.+|+.+.|+|++|+|||+|+..|++.
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3788999999999999999999998654
No 448
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.58 E-value=0.1 Score=58.72 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|+.|+|||||+..|+...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588899999999999999999999998764
No 449
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.56 E-value=0.36 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.7
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.-+++.|++|+|||+++..+|+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 346789999999999999998864
No 450
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.55 E-value=0.097 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.+.|.|++|+|||||+..|+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999998764
No 451
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.52 E-value=0.12 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.|+|+||+||||++..|++..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999864
No 452
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.48 E-value=0.33 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.8
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-.++.|++|+|||+++..+|+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999998775
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.48 E-value=0.3 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.0
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
+++.||||+|||+|+..+|+..+...
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 78899999999999999999876654
No 454
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.43 E-value=0.11 Score=56.87 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.-+.+-+|++++|.|++|+|||||+..|+...
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788899999999999999999999998754
No 455
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.39 E-value=0.28 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-+++++|.+|+|||+|...|.+..
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999988753
No 456
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.38 E-value=0.11 Score=56.57 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999999999998764
No 457
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.23 Score=51.53 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=35.3
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEE-------EeeCCchhHHHHHHHh
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVY-------VGCGERGNEMAEVLMD 256 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~-------~~iGer~~Ev~e~~~~ 256 (480)
++|+||+|+|||-++..++.+.+.+.+.. --+||..|=++|.+..
T Consensus 169 ~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~y 220 (388)
T KOG0651|consen 169 LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRY 220 (388)
T ss_pred eEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHH
Confidence 68999999999999999998876654322 2478888888887754
No 458
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.31 E-value=0.12 Score=52.76 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=31.7
Q ss_pred ceecc-ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 198 RVLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 198 raID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.++|. =+.+.+|+-.++.|+.|+|||||+.+|+....++
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 44433 4678899999999999999999999998775543
No 459
>PHA00729 NTP-binding motif containing protein
Probab=91.27 E-value=0.065 Score=53.06 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.6
Q ss_pred ceeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+..|...+. ..+.|+|+||+|||+|+..|++..
T Consensus 7 ~~~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGF-VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444444 479999999999999999999863
No 460
>PRK08727 hypothetical protein; Validated
Probab=91.27 E-value=1 Score=44.19 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=28.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC-CC-EEEEEeeCCchhHHHHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN-SD-TVVYVGCGERGNEMAEVL 254 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~-~d-v~V~~~iGer~~Ev~e~~ 254 (480)
-+.|.|++|+|||+|+..++++.. .+ -++|.-+.+..+...+.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 88 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDAL 88 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHH
Confidence 389999999999999999866521 12 345655544333333443
No 461
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.26 E-value=0.11 Score=55.50 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 345788999999999999999999999987643
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.23 E-value=0.15 Score=46.32 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.3
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
++..+.|.|++|+||||++..+++..+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5678999999999999999999987543
No 463
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=0.11 Score=57.18 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.8
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++|.||.|++|.|++|+||||++.+|-+..
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999988754
No 464
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.18 E-value=0.16 Score=50.67 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=26.9
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
+..|+.+.|.|++|+|||+|+..|++..+..++
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 345788999999999999999999986655543
No 465
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.15 E-value=0.1 Score=53.22 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.2
Q ss_pred ceeccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 198 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 198 raID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+-|.-+.|.+|+++|+.|+.|+||||++.|+..-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 67789999999999999999999999999998654
No 466
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.12 E-value=0.12 Score=57.14 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|.=+.+-+||+++|.|++|+|||||+..|++...
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4557899999999999999999999999987643
No 467
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.12 E-value=0.12 Score=58.07 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+-+|++++|.|+.|+|||||+..|+...
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3588999999999999999999999998764
No 468
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.11 E-value=0.12 Score=58.50 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344788999999999999999999999998764
No 469
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.10 E-value=0.12 Score=56.36 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 345678899999999999999999999998754
No 470
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.10 E-value=0.12 Score=57.04 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=28.2
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|+|++|.|+.|+|||||+..|+...
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 344668899999999999999999999996653
No 471
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.08 E-value=0.13 Score=56.14 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|++++|.|++|+|||||+..|++..+.
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457889999999999999999999999886543
No 472
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.04 E-value=0.28 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.1
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+++.||||||||+|+..||+..+..
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 8899999999999999999876543
No 473
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.01 E-value=0.11 Score=51.56 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|.-+.+.+|++++|.|++|+|||||+..++.-
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 56678999999999999999999999998654
No 474
>PRK13409 putative ATPase RIL; Provisional
Probab=91.00 E-value=0.14 Score=57.14 Aligned_cols=36 Identities=31% Similarity=0.175 Sum_probs=31.3
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++.+..+-+|+.++|+|+.|+|||||+..|+....
T Consensus 89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 566666789999999999999999999999987643
No 475
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=91.00 E-value=0.13 Score=56.54 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999999998764
No 476
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=90.99 E-value=0.12 Score=56.56 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++=+++.+|-|-|++|+.|+|||||+.+|++.
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHhc
Confidence 35578999999999999999999999999983
No 477
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.98 E-value=0.11 Score=56.36 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998654
No 478
>PRK05748 replicative DNA helicase; Provisional
Probab=90.97 E-value=0.22 Score=53.57 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=48.2
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC--C-CCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~--~-~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++. +-+|+=+.|-|.||+|||+++.+++.+. + ..-++|.-.-+..+++.+
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHH
Confidence 348999999999874 7789999999999999999999987652 2 333556666666666654
No 479
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.93 E-value=0.1 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.6
Q ss_pred ccccccccccccCCCCCCCchHHHH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQ 227 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~ 227 (480)
=+.+.+|+.++|.|++|+|||||+.
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHHH
Confidence 3678999999999999999999963
No 480
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.92 E-value=0.32 Score=45.48 Aligned_cols=85 Identities=25% Similarity=0.256 Sum_probs=53.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC-CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 286 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~-~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p 286 (480)
||--+-|.|-+|+|||||+..+.+.. .....+|.+=|. +++..+. .+ -.-+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD---~lR~~l~--------------~d-----------l~fs 52 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD---NLRHGLN--------------AD-----------LGFS 52 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH---HHCTTTT--------------TT-------------SS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc---chhhccC--------------CC-----------CCCC
Confidence 45567789999999999999987653 223556666553 2222111 00 0224
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 287 VAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 287 ~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
...|..-+...-.+|..|.++|..|++-+-|.++
T Consensus 53 ~~dR~e~~rr~~~~A~ll~~~G~ivIva~isp~~ 86 (156)
T PF01583_consen 53 KEDREENIRRIAEVAKLLADQGIIVIVAFISPYR 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEE----SH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCch
Confidence 5677777778888999999999988886666653
No 481
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.92 E-value=0.11 Score=57.33 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|+|++|+|||||+..|.+..
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34788999999999999999999999998764
No 482
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.90 E-value=0.14 Score=56.54 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|++++|.|+.|+|||||+..|+...
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344789999999999999999999999998754
No 483
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=90.90 E-value=0.11 Score=56.75 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 28 VSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34678899999999999999999999998654
No 484
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.90 E-value=0.12 Score=52.39 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.4
Q ss_pred ccceec-cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 196 GQRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 196 GIraID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+-+++| .-++|-+|.-+.+.|++|+||||++.||-+-..
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 335554 457899999999999999999999999876543
No 485
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.89 E-value=0.53 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-.++.|++|+|||+++..+|+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999998863
No 486
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.85 E-value=0.13 Score=57.71 Aligned_cols=33 Identities=36% Similarity=0.421 Sum_probs=29.3
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345788899999999999999999999998764
No 487
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.84 E-value=0.13 Score=58.15 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678899999999999999999999998764
No 488
>PRK03839 putative kinase; Provisional
Probab=90.83 E-value=0.14 Score=47.57 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++.|+|.||+||||++..|++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 489
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.81 E-value=0.11 Score=56.47 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998754
No 490
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.76 E-value=0.19 Score=53.53 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=45.8
Q ss_pred cccccceecccc-ccccccccccCCCCCCCchHHHHHHhhcC--CCC-EEEEEeeCCchhHHHH
Q 011655 193 LLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSD-TVVYVGCGERGNEMAE 252 (480)
Q Consensus 193 l~TGIraID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~d-v~V~~~iGer~~Ev~e 252 (480)
+.||+..+|-++ -+.+|+=+.|-|.||+|||+++.+|+.+. ..+ -+.|.-.....+++.+
T Consensus 177 i~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 177 LSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 789999999988 48899999999999999999999988542 223 2444455555555544
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.75 E-value=0.14 Score=56.69 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|++++|+|++|+|||||+..|++..++
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p 392 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3367889999999999999999999999886433
No 492
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.73 E-value=0.14 Score=57.87 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344778899999999999999999999998764
No 493
>CHL00176 ftsH cell division protein; Validated
Probab=90.73 E-value=0.3 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+++.||||+|||+|+..+|+..+.
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999987544
No 494
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.72 E-value=0.2 Score=51.00 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=33.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCCEE-EEE--eeCCchhHHHHHHHh
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSDTV-VYV--GCGERGNEMAEVLMD 256 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~dv~-V~~--~iGer~~Ev~e~~~~ 256 (480)
.++++||+|+|||.++..+|+.++...+ |=+ +|||.--+..+.+++
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 4788999999999999999998765542 322 566666555555554
No 495
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.67 E-value=0.74 Score=45.27 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=30.0
Q ss_pred cceeccccccccccccccCCCCCCCchHHHHHHhh
Q 011655 197 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 197 IraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
...-|.-+.+.+|++++|.|+.+.||||++..|+.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567777788999999999999999999998765
No 496
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.65 E-value=0.15 Score=56.47 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|++++|.|++|+|||||+..|++...
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345788999999999999999999999987643
No 497
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.62 E-value=0.12 Score=55.91 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=30.6
Q ss_pred ceec-cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++++ .=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 4554 34589999999999999999999999998764
No 498
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.62 E-value=0.14 Score=55.57 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 345889999999999999999999999987643
No 499
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.59 E-value=0.19 Score=47.12 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred cccCCCCCCCchHHHHHHhhcC---------CCCEEEEEeeCCchhHHHHHHHhccc
Q 011655 212 CAIPGAFGCGKTVISQALSKYS---------NSDTVVYVGCGERGNEMAEVLMDFPQ 259 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~---------~~dv~V~~~iGer~~Ev~e~~~~~~~ 259 (480)
..|.||||||||+++..++... ..+ --+..+......+.++++.+.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~-~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRG-KKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCS-S-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhcc-ccceeecCCchhHHHHHHHHHh
Confidence 6789999999998877655443 222 2233344667777788877533
No 500
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.59 E-value=0.18 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=28.0
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE 245 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGe 245 (480)
....|+.|+|+||+||||++..|++..+ +.++-+|+
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g---~~~is~gd 39 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN---LKHINMGN 39 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CcEEECCh
Confidence 3447899999999999999999998643 34555564
Done!