Query 011655
Match_columns 480
No_of_seqs 228 out of 1569
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_A V-type sodium ATPase ca 100.0 3E-125 9E-130 1012.1 39.9 461 2-468 27-490 (600)
2 3mfy_A V-type ATP synthase alp 100.0 1E-126 4E-131 1019.5 26.5 462 2-468 21-485 (588)
3 3gqb_A V-type ATP synthase alp 100.0 7E-124 3E-128 997.6 34.7 456 2-468 20-477 (578)
4 3oaa_A ATP synthase subunit al 100.0 1.6E-99 5E-104 803.8 34.7 358 1-465 44-412 (513)
5 3vr4_D V-type sodium ATPase su 100.0 1.8E-99 6E-104 797.9 34.0 361 1-468 28-402 (465)
6 3gqb_B V-type ATP synthase bet 100.0 9E-99 3E-103 792.5 33.6 360 1-467 24-404 (464)
7 2c61_A A-type ATP synthase non 100.0 5.6E-99 2E-103 797.5 30.1 360 2-468 31-403 (469)
8 2qe7_A ATP synthase subunit al 100.0 2.8E-98 1E-102 795.7 35.0 356 1-466 44-402 (502)
9 2r9v_A ATP synthase subunit al 100.0 1.8E-98 6E-103 797.8 31.9 356 1-465 56-414 (515)
10 2ck3_D ATP synthase subunit be 100.0 4.3E-97 1E-101 783.4 34.5 352 3-467 33-400 (482)
11 2ck3_A ATP synthase subunit al 100.0 1.9E-97 6E-102 790.7 31.5 355 1-465 44-409 (510)
12 1fx0_B ATP synthase beta chain 100.0 2.4E-97 8E-102 788.0 30.7 352 4-468 41-414 (498)
13 1fx0_A ATP synthase alpha chai 100.0 5.2E-98 2E-102 794.5 25.6 355 1-465 45-402 (507)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 4.4E-90 1.5E-94 730.8 30.5 352 3-467 23-392 (473)
15 3l0o_A Transcription terminati 100.0 2.5E-74 8.5E-79 595.7 18.5 337 57-464 57-406 (427)
16 3ice_A Transcription terminati 100.0 1.7E-71 5.7E-76 575.4 17.4 253 184-466 145-407 (422)
17 2dpy_A FLII, flagellum-specifi 100.0 4.9E-62 1.7E-66 514.1 31.2 351 3-464 27-391 (438)
18 2obl_A ESCN; ATPase, hydrolase 100.0 2.9E-60 9.9E-65 486.9 26.1 268 173-464 34-302 (347)
19 2cvh_A DNA repair and recombin 97.8 3E-05 1E-09 71.4 6.2 62 193-255 2-67 (220)
20 2zts_A Putative uncharacterize 97.6 8.3E-05 2.8E-09 69.6 7.2 66 191-256 10-80 (251)
21 4a74_A DNA repair and recombin 97.6 7.4E-05 2.5E-09 69.2 6.0 42 191-232 5-48 (231)
22 1n0w_A DNA repair protein RAD5 97.5 0.00016 5.5E-09 67.5 7.5 42 191-232 4-47 (243)
23 1v5w_A DMC1, meiotic recombina 97.4 0.00026 8.9E-09 71.6 7.8 121 189-324 100-234 (343)
24 2z43_A DNA repair and recombin 97.3 0.00026 8.7E-09 70.9 6.7 122 188-324 84-218 (324)
25 2ehv_A Hypothetical protein PH 97.3 0.00014 4.8E-09 68.2 4.1 65 191-255 10-79 (251)
26 3io5_A Recombination and repai 97.2 0.00021 7.2E-09 72.7 4.4 107 192-322 6-124 (333)
27 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00017 5.9E-09 66.4 3.5 64 192-255 4-71 (235)
28 2i1q_A DNA repair and recombin 97.2 0.0003 1E-08 69.9 5.1 121 189-324 76-219 (322)
29 1pzn_A RAD51, DNA repair and r 97.1 0.00052 1.8E-08 69.8 6.4 120 189-324 109-246 (349)
30 2zr9_A Protein RECA, recombina 97.1 0.00039 1.3E-08 70.8 5.5 108 191-322 40-152 (349)
31 3lda_A DNA repair protein RAD5 97.0 0.0013 4.4E-08 68.4 8.4 44 188-231 155-200 (400)
32 3hr8_A Protein RECA; alpha and 97.0 0.00054 1.8E-08 70.3 4.9 53 191-243 40-97 (356)
33 3pvs_A Replication-associated 96.8 0.00065 2.2E-08 71.4 4.4 49 207-255 48-96 (447)
34 2dr3_A UPF0273 protein PH0284; 96.8 0.00062 2.1E-08 63.5 3.5 64 192-255 4-71 (247)
35 1u94_A RECA protein, recombina 96.8 0.0012 4.1E-08 67.5 5.6 55 190-244 41-100 (356)
36 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00096 3.3E-08 67.8 4.4 44 189-232 102-146 (331)
37 1xp8_A RECA protein, recombina 96.7 0.0013 4.4E-08 67.6 5.3 108 190-321 52-164 (366)
38 3bh0_A DNAB-like replicative h 96.7 0.0048 1.7E-07 61.4 9.2 62 191-252 49-113 (315)
39 3cmu_A Protein RECA, recombina 96.2 0.0084 2.9E-07 73.3 8.9 115 186-324 8-127 (2050)
40 1zp6_A Hypothetical protein AT 96.0 0.0027 9.1E-08 57.3 2.6 32 203-234 3-34 (191)
41 3cmw_A Protein RECA, recombina 95.9 0.0077 2.6E-07 72.7 6.4 114 187-324 9-127 (1706)
42 1cr0_A DNA primase/helicase; R 95.9 0.0025 8.4E-08 62.2 1.7 41 192-232 16-58 (296)
43 3t15_A Ribulose bisphosphate c 95.7 0.0064 2.2E-07 59.8 3.9 27 212-238 39-65 (293)
44 3bs4_A Uncharacterized protein 95.6 0.052 1.8E-06 53.2 10.1 64 193-256 3-70 (260)
45 3bgw_A DNAB-like replicative h 95.6 0.017 5.8E-07 60.5 7.0 62 191-252 178-242 (444)
46 3h4m_A Proteasome-activating n 95.6 0.045 1.6E-06 52.3 9.4 29 208-236 50-78 (285)
47 2v1u_A Cell division control p 95.5 0.037 1.3E-06 54.6 8.8 27 207-233 42-68 (387)
48 1tf7_A KAIC; homohexamer, hexa 95.4 0.041 1.4E-06 58.5 9.3 62 191-252 261-326 (525)
49 2q6t_A DNAB replication FORK h 95.4 0.031 1.1E-06 58.1 8.3 62 191-252 181-246 (444)
50 3cmu_A Protein RECA, recombina 95.4 0.017 5.9E-07 70.7 7.0 109 189-322 1404-1518(2050)
51 1nlf_A Regulatory protein REPA 95.4 0.0029 9.8E-08 61.4 0.3 45 188-232 8-53 (279)
52 4b4t_J 26S protease regulatory 95.4 0.034 1.2E-06 58.0 8.2 26 212-237 185-210 (405)
53 3uk6_A RUVB-like 2; hexameric 95.3 0.02 6.9E-07 56.8 6.2 28 209-236 70-97 (368)
54 4eun_A Thermoresistant glucoki 95.3 0.0058 2E-07 56.1 1.9 41 193-233 13-53 (200)
55 3ec2_A DNA replication protein 95.2 0.0078 2.7E-07 54.0 2.3 29 205-233 34-62 (180)
56 3tr0_A Guanylate kinase, GMP k 95.2 0.0067 2.3E-07 55.1 1.9 28 206-233 4-31 (205)
57 3cmw_A Protein RECA, recombina 95.2 0.014 4.8E-07 70.5 5.1 109 190-322 361-474 (1706)
58 1znw_A Guanylate kinase, GMP k 95.1 0.0069 2.4E-07 56.0 1.8 29 205-233 16-44 (207)
59 1z6g_A Guanylate kinase; struc 95.0 0.0074 2.5E-07 56.7 1.9 30 204-233 18-47 (218)
60 1q57_A DNA primase/helicase; d 95.0 0.025 8.6E-07 59.6 6.2 62 191-252 222-288 (503)
61 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.12 3.9E-06 51.5 10.6 24 210-233 46-69 (322)
62 4b4t_K 26S protease regulatory 95.0 0.072 2.5E-06 55.8 9.4 27 212-238 209-235 (428)
63 1d2n_A N-ethylmaleimide-sensit 94.8 0.059 2E-06 51.5 7.6 30 208-237 63-92 (272)
64 4b4t_I 26S protease regulatory 94.8 0.066 2.3E-06 56.3 8.5 26 212-237 219-244 (437)
65 3cf0_A Transitional endoplasmi 94.8 0.03 1E-06 55.0 5.6 30 207-236 47-76 (301)
66 3ney_A 55 kDa erythrocyte memb 94.7 0.24 8.1E-06 46.5 11.3 29 204-232 14-42 (197)
67 3tif_A Uncharacterized ABC tra 94.7 0.011 3.9E-07 56.5 2.2 35 202-236 24-58 (235)
68 4b4t_L 26S protease subunit RP 94.7 0.074 2.5E-06 55.9 8.5 26 212-237 218-243 (437)
69 4b4t_H 26S protease regulatory 94.7 0.067 2.3E-06 56.7 8.1 26 212-237 246-271 (467)
70 2j41_A Guanylate kinase; GMP, 94.6 0.012 4E-07 53.5 2.0 29 205-233 2-30 (207)
71 4b4t_M 26S protease regulatory 94.6 0.051 1.8E-06 57.0 7.1 27 212-238 218-244 (434)
72 2qby_A CDC6 homolog 1, cell di 94.6 0.041 1.4E-06 54.1 6.0 27 207-233 43-69 (386)
73 3c8u_A Fructokinase; YP_612366 94.6 0.011 3.8E-07 54.6 1.8 27 206-232 19-45 (208)
74 3n70_A Transport activator; si 94.6 0.11 3.8E-06 45.1 8.1 26 208-233 23-48 (145)
75 1htw_A HI0065; nucleotide-bind 94.5 0.012 4.1E-07 53.1 1.7 30 204-233 28-57 (158)
76 1w5s_A Origin recognition comp 94.4 0.06 2E-06 53.9 6.9 26 208-233 49-76 (412)
77 2ff7_A Alpha-hemolysin translo 94.4 0.014 4.8E-07 56.3 2.1 35 202-236 28-62 (247)
78 2pcj_A ABC transporter, lipopr 94.4 0.012 4.2E-07 55.7 1.6 35 202-236 23-57 (224)
79 2cbz_A Multidrug resistance-as 94.4 0.013 4.3E-07 56.2 1.6 32 202-233 24-55 (237)
80 3eie_A Vacuolar protein sortin 94.3 0.15 5.3E-06 50.2 9.5 27 210-236 52-78 (322)
81 2v9p_A Replication protein E1; 94.3 0.012 4.1E-07 59.0 1.4 35 201-235 118-152 (305)
82 1g6h_A High-affinity branched- 94.3 0.016 5.4E-07 56.1 2.2 35 202-236 26-60 (257)
83 2pze_A Cystic fibrosis transme 94.3 0.016 5.3E-07 55.2 2.1 34 202-235 27-60 (229)
84 4g1u_C Hemin import ATP-bindin 94.3 0.015 5.2E-07 56.8 2.0 36 199-234 26-62 (266)
85 1lv7_A FTSH; alpha/beta domain 94.3 0.31 1.1E-05 45.9 11.2 25 212-236 48-72 (257)
86 1sgw_A Putative ABC transporte 94.3 0.016 5.5E-07 54.9 2.1 34 203-236 29-62 (214)
87 1b0u_A Histidine permease; ABC 94.3 0.016 5.5E-07 56.3 2.2 35 202-236 25-59 (262)
88 2x8a_A Nuclear valosin-contain 94.2 0.019 6.6E-07 56.0 2.7 30 205-236 42-71 (274)
89 2r6a_A DNAB helicase, replicat 94.2 0.029 9.8E-07 58.6 4.1 62 191-252 184-249 (454)
90 1lvg_A Guanylate kinase, GMP k 94.2 0.014 4.9E-07 53.8 1.7 25 208-232 3-27 (198)
91 1fnn_A CDC6P, cell division co 94.2 0.2 6.9E-06 49.4 10.1 35 211-245 46-83 (389)
92 3gfo_A Cobalt import ATP-bindi 94.2 0.017 5.7E-07 56.9 2.1 35 202-236 27-61 (275)
93 3vaa_A Shikimate kinase, SK; s 94.2 0.018 6.3E-07 52.7 2.2 30 205-234 21-50 (199)
94 1vpl_A ABC transporter, ATP-bi 94.1 0.018 6E-07 56.1 2.2 34 203-236 35-68 (256)
95 2olj_A Amino acid ABC transpor 94.1 0.018 6.1E-07 56.3 2.2 35 202-236 43-77 (263)
96 1ji0_A ABC transporter; ATP bi 94.1 0.017 5.9E-07 55.3 2.1 34 203-236 26-59 (240)
97 2ihy_A ABC transporter, ATP-bi 94.1 0.017 5.9E-07 56.8 2.1 35 202-236 40-74 (279)
98 1mv5_A LMRA, multidrug resista 94.1 0.017 5.8E-07 55.4 2.0 33 202-234 21-53 (243)
99 3u61_B DNA polymerase accessor 94.1 0.016 5.4E-07 56.8 1.8 69 211-287 49-118 (324)
100 2ixe_A Antigen peptide transpo 94.1 0.018 6.3E-07 56.3 2.2 35 202-236 38-72 (271)
101 3lnc_A Guanylate kinase, GMP k 94.0 0.014 4.9E-07 54.6 1.3 36 195-232 15-51 (231)
102 1ixz_A ATP-dependent metallopr 94.0 0.026 9E-07 53.4 3.1 30 205-236 47-76 (254)
103 1kgd_A CASK, peripheral plasma 94.0 0.018 6.1E-07 52.1 1.8 26 208-233 4-29 (180)
104 2kjq_A DNAA-related protein; s 94.0 0.015 5E-07 51.7 1.2 25 208-232 35-59 (149)
105 3vfd_A Spastin; ATPase, microt 94.0 0.21 7E-06 50.7 9.9 28 209-236 148-175 (389)
106 2nq2_C Hypothetical ABC transp 93.9 0.02 6.7E-07 55.5 2.1 33 203-235 25-57 (253)
107 2zu0_C Probable ATP-dependent 93.9 0.018 6.2E-07 56.2 1.8 30 203-232 40-69 (267)
108 2d2e_A SUFC protein; ABC-ATPas 93.9 0.018 6E-07 55.6 1.7 31 202-232 22-52 (250)
109 2yz2_A Putative ABC transporte 93.9 0.021 7.3E-07 55.6 2.2 34 203-236 27-60 (266)
110 2ghi_A Transport protein; mult 93.9 0.018 6E-07 56.0 1.6 33 202-234 39-71 (260)
111 2qi9_C Vitamin B12 import ATP- 93.9 0.018 6.1E-07 55.8 1.7 34 202-235 19-52 (249)
112 4gp7_A Metallophosphoesterase; 93.9 0.016 5.4E-07 52.2 1.2 27 204-230 4-30 (171)
113 2jeo_A Uridine-cytidine kinase 93.8 0.019 6.5E-07 54.5 1.7 29 204-232 20-48 (245)
114 3fvq_A Fe(3+) IONS import ATP- 93.8 0.02 6.9E-07 58.7 1.9 38 198-235 18-56 (359)
115 2gno_A DNA polymerase III, gam 93.6 0.034 1.2E-06 55.4 3.2 47 210-256 19-73 (305)
116 1l8q_A Chromosomal replication 93.6 0.03 1E-06 55.0 2.7 26 208-233 36-61 (324)
117 1z47_A CYSA, putative ABC-tran 93.5 0.026 8.9E-07 57.7 2.3 36 201-236 33-68 (355)
118 3rlf_A Maltose/maltodextrin im 93.5 0.027 9.2E-07 58.2 2.4 36 201-236 21-56 (381)
119 1pui_A ENGB, probable GTP-bind 93.5 0.012 4E-07 53.4 -0.3 34 198-232 16-49 (210)
120 2yyz_A Sugar ABC transporter, 93.5 0.027 9.4E-07 57.6 2.4 36 201-236 21-56 (359)
121 2it1_A 362AA long hypothetical 93.5 0.028 9.4E-07 57.7 2.4 36 201-236 21-56 (362)
122 1v43_A Sugar-binding transport 93.4 0.029 9.9E-07 57.7 2.4 36 201-236 29-64 (372)
123 3asz_A Uridine kinase; cytidin 93.4 0.021 7.1E-07 52.3 1.1 28 206-233 3-30 (211)
124 1g29_1 MALK, maltose transport 93.4 0.029 9.9E-07 57.6 2.3 36 201-236 21-56 (372)
125 1iy2_A ATP-dependent metallopr 93.3 0.039 1.3E-06 53.1 3.1 30 205-236 71-100 (278)
126 1kag_A SKI, shikimate kinase I 93.3 0.029 9.9E-07 49.5 1.9 27 208-234 3-29 (173)
127 3nh6_A ATP-binding cassette SU 93.3 0.02 6.7E-07 57.4 0.9 35 202-236 73-107 (306)
128 1tf7_A KAIC; homohexamer, hexa 93.3 0.019 6.6E-07 61.0 0.8 39 191-229 19-59 (525)
129 3b85_A Phosphate starvation-in 93.3 0.026 8.8E-07 53.1 1.6 27 206-232 19-45 (208)
130 4a1f_A DNAB helicase, replicat 93.3 0.042 1.4E-06 55.8 3.2 62 191-252 27-91 (338)
131 2bdt_A BH3686; alpha-beta prot 93.2 0.03 1E-06 50.4 1.9 25 209-233 2-26 (189)
132 2i3b_A HCR-ntpase, human cance 93.2 0.028 9.6E-07 52.1 1.7 24 209-232 1-24 (189)
133 1y63_A LMAJ004144AAA protein; 93.2 0.03 1E-06 50.6 1.9 28 205-232 6-33 (184)
134 2qt1_A Nicotinamide riboside k 93.2 0.026 8.9E-07 51.7 1.4 32 202-233 14-45 (207)
135 1jr3_A DNA polymerase III subu 93.2 0.039 1.3E-06 54.5 2.8 22 212-233 41-62 (373)
136 2eyu_A Twitching motility prot 93.1 0.024 8.4E-07 55.1 1.3 33 199-232 16-48 (261)
137 3d8b_A Fidgetin-like protein 1 93.1 0.15 5.3E-06 51.2 7.1 28 209-236 117-144 (357)
138 3d31_A Sulfate/molybdate ABC t 93.0 0.024 8.2E-07 57.8 1.0 36 201-236 18-53 (348)
139 3gd7_A Fusion complex of cysti 92.9 0.028 9.5E-07 58.2 1.3 31 203-233 41-71 (390)
140 3tui_C Methionine import ATP-b 92.9 0.04 1.4E-06 56.7 2.4 40 197-236 41-81 (366)
141 3a00_A Guanylate kinase, GMP k 92.8 0.035 1.2E-06 50.3 1.7 25 209-233 1-25 (186)
142 1knq_A Gluconate kinase; ALFA/ 92.8 0.034 1.2E-06 49.3 1.6 27 207-233 6-32 (175)
143 2ce7_A Cell division protein F 92.8 0.22 7.6E-06 52.7 8.0 25 212-236 52-76 (476)
144 2bbs_A Cystic fibrosis transme 92.7 0.029 9.8E-07 55.6 1.1 32 203-234 58-89 (290)
145 2pjz_A Hypothetical protein ST 92.7 0.039 1.3E-06 53.8 2.0 31 204-236 26-56 (263)
146 1s96_A Guanylate kinase, GMP k 92.6 0.039 1.3E-06 52.2 1.9 29 206-234 13-41 (219)
147 3tau_A Guanylate kinase, GMP k 92.6 0.044 1.5E-06 50.7 2.1 29 207-235 6-34 (208)
148 1oxx_K GLCV, glucose, ABC tran 92.6 0.024 8.2E-07 57.8 0.3 35 202-236 24-58 (353)
149 2qor_A Guanylate kinase; phosp 92.5 0.043 1.5E-06 50.4 1.9 28 206-233 9-36 (204)
150 1ye8_A Protein THEP1, hypothet 92.5 0.039 1.3E-06 50.5 1.6 23 211-233 2-24 (178)
151 3uie_A Adenylyl-sulfate kinase 92.4 0.04 1.4E-06 50.4 1.6 27 207-233 23-49 (200)
152 1a5t_A Delta prime, HOLB; zinc 92.4 0.091 3.1E-06 52.3 4.3 21 212-232 27-47 (334)
153 3bos_A Putative DNA replicatio 92.4 0.036 1.2E-06 50.7 1.2 36 198-233 41-76 (242)
154 3aez_A Pantothenate kinase; tr 92.3 0.044 1.5E-06 54.7 1.8 28 205-232 86-113 (312)
155 2z4s_A Chromosomal replication 92.3 0.1 3.5E-06 54.3 4.6 25 209-233 130-154 (440)
156 1yqt_A RNAse L inhibitor; ATP- 92.3 0.061 2.1E-06 57.7 3.0 35 199-233 37-71 (538)
157 1t9h_A YLOQ, probable GTPase E 92.2 0.017 5.9E-07 57.8 -1.3 34 200-233 164-197 (307)
158 3cm0_A Adenylate kinase; ATP-b 92.1 0.044 1.5E-06 48.9 1.4 27 207-233 2-28 (186)
159 1lw7_A Transcriptional regulat 92.1 0.039 1.3E-06 55.7 1.1 32 205-236 164-197 (365)
160 2qp9_X Vacuolar protein sortin 92.1 0.16 5.4E-06 51.2 5.6 28 210-237 85-112 (355)
161 2onk_A Molybdate/tungstate ABC 92.0 0.061 2.1E-06 51.6 2.3 35 201-236 17-51 (240)
162 1cke_A CK, MSSA, protein (cyti 91.9 0.054 1.8E-06 49.9 1.8 25 209-233 5-29 (227)
163 3j16_B RLI1P; ribosome recycli 91.9 0.071 2.4E-06 58.2 3.0 35 199-233 93-127 (608)
164 2yv5_A YJEQ protein; hydrolase 91.9 0.044 1.5E-06 54.2 1.2 36 199-235 155-190 (302)
165 2bbw_A Adenylate kinase 4, AK4 91.8 0.054 1.8E-06 51.2 1.7 25 208-232 26-50 (246)
166 1u0l_A Probable GTPase ENGC; p 91.8 0.038 1.3E-06 54.5 0.7 38 199-236 159-196 (301)
167 2qm8_A GTPase/ATPase; G protei 91.8 0.054 1.8E-06 54.5 1.7 35 198-232 43-78 (337)
168 1jbk_A CLPB protein; beta barr 91.7 0.061 2.1E-06 46.9 1.8 26 207-232 41-66 (195)
169 3cf2_A TER ATPase, transitiona 91.6 0.39 1.3E-05 54.1 8.6 25 212-236 241-265 (806)
170 3iij_A Coilin-interacting nucl 91.6 0.071 2.4E-06 47.5 2.1 28 207-234 9-36 (180)
171 3hu3_A Transitional endoplasmi 91.5 0.32 1.1E-05 51.5 7.5 27 209-235 238-264 (489)
172 1qhx_A CPT, protein (chloramph 91.5 0.1 3.4E-06 46.2 3.1 28 209-236 3-30 (178)
173 3bk7_A ABC transporter ATP-bin 91.4 0.081 2.8E-06 57.7 2.8 35 199-233 107-141 (607)
174 1in4_A RUVB, holliday junction 91.4 0.12 4.2E-06 51.3 3.9 46 210-255 52-98 (334)
175 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.052 1.8E-06 57.2 1.2 32 202-233 131-162 (460)
176 2a5y_B CED-4; apoptosis; HET: 91.3 0.37 1.3E-05 51.2 7.8 38 210-247 153-196 (549)
177 2vp4_A Deoxynucleoside kinase; 91.3 0.086 2.9E-06 49.5 2.5 33 205-238 16-48 (230)
178 1sq5_A Pantothenate kinase; P- 91.1 0.058 2E-06 53.3 1.2 28 205-232 76-103 (308)
179 1kht_A Adenylate kinase; phosp 91.1 0.075 2.6E-06 47.2 1.8 26 208-233 2-27 (192)
180 4e22_A Cytidylate kinase; P-lo 91.0 0.075 2.6E-06 50.8 1.8 27 207-233 25-51 (252)
181 3dl0_A Adenylate kinase; phosp 90.9 0.095 3.2E-06 48.1 2.4 24 211-234 2-25 (216)
182 3b9p_A CG5977-PA, isoform A; A 90.8 0.11 3.7E-06 50.1 2.8 27 209-235 54-80 (297)
183 2qz4_A Paraplegin; AAA+, SPG7, 90.8 0.095 3.2E-06 49.1 2.3 27 210-236 40-66 (262)
184 3te6_A Regulatory protein SIR3 90.8 0.35 1.2E-05 48.6 6.6 27 206-232 42-68 (318)
185 3b9q_A Chloroplast SRP recepto 90.8 0.081 2.8E-06 52.6 1.9 28 205-232 96-123 (302)
186 1zu4_A FTSY; GTPase, signal re 90.8 1.1 3.8E-05 44.7 10.3 43 204-246 100-144 (320)
187 1z6t_A APAF-1, apoptotic prote 90.7 0.59 2E-05 49.4 8.7 39 208-246 146-190 (591)
188 2wwf_A Thymidilate kinase, put 90.7 0.074 2.5E-06 48.3 1.4 27 206-232 7-33 (212)
189 2p5t_B PEZT; postsegregational 90.7 0.089 3.1E-06 50.2 2.0 31 205-235 28-58 (253)
190 2yl4_A ATP-binding cassette SU 90.7 0.091 3.1E-06 56.7 2.3 35 202-236 363-397 (595)
191 3b5x_A Lipid A export ATP-bind 90.7 0.091 3.1E-06 56.6 2.3 34 202-235 362-395 (582)
192 2gj8_A MNME, tRNA modification 90.6 0.067 2.3E-06 47.4 1.0 26 208-233 3-28 (172)
193 3kb2_A SPBC2 prophage-derived 90.6 0.079 2.7E-06 46.2 1.4 23 211-233 3-25 (173)
194 2vli_A Antibiotic resistance p 90.5 0.1 3.6E-06 46.2 2.2 29 208-236 4-32 (183)
195 3fb4_A Adenylate kinase; psych 90.5 0.094 3.2E-06 48.0 1.9 24 211-234 2-25 (216)
196 3qf4_B Uncharacterized ABC tra 90.5 0.1 3.4E-06 56.5 2.4 35 202-236 374-408 (598)
197 3trf_A Shikimate kinase, SK; a 90.5 0.1 3.5E-06 46.5 2.1 27 209-235 5-31 (185)
198 2p65_A Hypothetical protein PF 90.5 0.07 2.4E-06 46.6 1.0 27 207-233 41-67 (187)
199 2gza_A Type IV secretion syste 90.4 0.074 2.5E-06 54.0 1.2 33 203-235 169-201 (361)
200 1rj9_A FTSY, signal recognitio 90.4 0.095 3.2E-06 52.2 1.9 26 207-232 100-125 (304)
201 1zuh_A Shikimate kinase; alpha 90.3 0.1 3.5E-06 45.9 1.9 26 210-235 8-33 (168)
202 3dm5_A SRP54, signal recogniti 90.3 0.44 1.5E-05 50.1 7.1 25 208-232 99-123 (443)
203 1nn5_A Similar to deoxythymidy 90.3 0.081 2.8E-06 48.1 1.3 27 206-232 6-32 (215)
204 1rz3_A Hypothetical protein rb 90.3 0.082 2.8E-06 48.5 1.3 28 205-232 18-45 (201)
205 1c9k_A COBU, adenosylcobinamid 90.2 0.16 5.6E-06 47.0 3.3 43 212-256 2-45 (180)
206 3b60_A Lipid A export ATP-bind 90.2 0.089 3E-06 56.7 1.7 35 202-236 362-396 (582)
207 1ofh_A ATP-dependent HSL prote 90.1 0.13 4.6E-06 49.2 2.7 29 208-236 49-77 (310)
208 2pez_A Bifunctional 3'-phospho 90.1 0.096 3.3E-06 46.7 1.6 25 208-232 4-28 (179)
209 1yqt_A RNAse L inhibitor; ATP- 90.1 0.11 3.8E-06 55.7 2.2 28 206-233 309-336 (538)
210 2rcn_A Probable GTPase ENGC; Y 89.9 0.066 2.3E-06 54.8 0.4 35 200-234 206-240 (358)
211 3nwj_A ATSK2; P loop, shikimat 89.9 0.08 2.7E-06 51.3 0.9 30 204-233 40-72 (250)
212 1svm_A Large T antigen; AAA+ f 89.8 0.095 3.3E-06 53.9 1.5 32 204-235 164-195 (377)
213 3pfi_A Holliday junction ATP-d 89.8 0.42 1.4E-05 46.8 6.1 46 210-255 56-102 (338)
214 2plr_A DTMP kinase, probable t 89.8 0.11 3.6E-06 47.0 1.6 26 208-233 3-28 (213)
215 3ozx_A RNAse L inhibitor; ATP 89.8 0.11 3.9E-06 55.7 2.1 29 205-233 290-318 (538)
216 4a82_A Cystic fibrosis transme 89.8 0.08 2.7E-06 57.0 0.9 35 202-236 360-394 (578)
217 2v54_A DTMP kinase, thymidylat 89.8 0.12 4.2E-06 46.6 2.0 26 208-233 3-28 (204)
218 2pt7_A CAG-ALFA; ATPase, prote 89.7 0.084 2.9E-06 53.0 0.9 32 204-235 166-197 (330)
219 2r62_A Cell division protease 89.7 0.15 5.1E-06 48.3 2.6 24 212-235 47-70 (268)
220 1zd8_A GTP:AMP phosphotransfer 89.6 0.11 3.7E-06 48.3 1.6 29 206-234 4-32 (227)
221 2iyv_A Shikimate kinase, SK; t 89.6 0.14 4.7E-06 45.7 2.2 25 210-234 3-27 (184)
222 3bk7_A ABC transporter ATP-bin 89.4 0.13 4.5E-06 56.0 2.2 29 206-234 379-407 (607)
223 2rhm_A Putative kinase; P-loop 89.4 0.12 4.1E-06 46.1 1.6 27 208-234 4-30 (193)
224 1gvn_B Zeta; postsegregational 89.3 0.16 5.4E-06 49.8 2.5 30 205-234 29-58 (287)
225 2dhr_A FTSH; AAA+ protein, hex 89.2 0.18 6.2E-06 53.7 3.1 29 206-236 63-91 (499)
226 2yhs_A FTSY, cell division pro 89.1 0.13 4.5E-06 54.9 2.0 29 204-232 288-316 (503)
227 2og2_A Putative signal recogni 89.1 0.13 4.6E-06 52.5 1.9 29 204-232 152-180 (359)
228 2yvu_A Probable adenylyl-sulfa 89.1 0.13 4.6E-06 46.0 1.7 28 205-232 9-36 (186)
229 2chg_A Replication factor C sm 89.1 0.14 4.8E-06 45.6 1.8 25 208-232 37-61 (226)
230 2f9l_A RAB11B, member RAS onco 89.0 0.13 4.4E-06 46.4 1.5 23 211-233 7-29 (199)
231 3cf2_A TER ATPase, transitiona 89.0 0.24 8.2E-06 55.8 4.0 27 210-236 512-538 (806)
232 1jjv_A Dephospho-COA kinase; P 89.0 0.13 4.4E-06 46.8 1.5 21 211-231 4-24 (206)
233 2c95_A Adenylate kinase 1; tra 88.9 0.12 4E-06 46.2 1.2 28 207-234 7-34 (196)
234 1aky_A Adenylate kinase; ATP:A 88.9 0.14 4.9E-06 47.2 1.8 27 208-234 3-29 (220)
235 3t61_A Gluconokinase; PSI-biol 88.9 0.17 5.8E-06 46.0 2.3 23 211-233 20-42 (202)
236 2w58_A DNAI, primosome compone 88.9 0.13 4.6E-06 46.5 1.6 24 210-233 55-78 (202)
237 3lw7_A Adenylate kinase relate 88.9 0.15 5.2E-06 44.0 1.9 21 212-233 4-24 (179)
238 1tev_A UMP-CMP kinase; ploop, 88.8 0.13 4.5E-06 45.6 1.5 26 209-234 3-28 (196)
239 2if2_A Dephospho-COA kinase; a 88.8 0.11 3.8E-06 47.1 1.0 21 211-231 3-23 (204)
240 3qf4_A ABC transporter, ATP-bi 88.8 0.21 7.1E-06 53.9 3.3 34 203-236 363-396 (587)
241 1ly1_A Polynucleotide kinase; 88.8 0.13 4.6E-06 45.0 1.5 21 211-231 4-24 (181)
242 2cdn_A Adenylate kinase; phosp 88.8 0.17 5.7E-06 46.0 2.2 26 209-234 20-45 (201)
243 2qag_B Septin-6, protein NEDD5 88.7 0.15 5E-06 53.5 1.9 30 203-232 34-65 (427)
244 3sfz_A APAF-1, apoptotic pepti 88.5 0.67 2.3E-05 52.7 7.3 37 210-246 148-190 (1249)
245 1oix_A RAS-related protein RAB 88.5 0.12 4.2E-06 46.5 1.0 23 211-233 31-53 (191)
246 1ukz_A Uridylate kinase; trans 88.4 0.19 6.6E-06 45.4 2.4 26 209-234 15-40 (203)
247 2jaq_A Deoxyguanosine kinase; 88.4 0.16 5.3E-06 45.6 1.7 25 211-235 2-26 (205)
248 2wji_A Ferrous iron transport 88.4 0.14 4.9E-06 44.6 1.4 22 211-232 5-26 (165)
249 3hws_A ATP-dependent CLP prote 88.4 0.24 8.2E-06 49.5 3.2 29 209-237 51-79 (363)
250 3ozx_A RNAse L inhibitor; ATP 88.2 0.18 6.3E-06 54.1 2.3 31 203-233 19-49 (538)
251 1via_A Shikimate kinase; struc 88.2 0.16 5.6E-06 45.0 1.6 24 211-234 6-29 (175)
252 3e70_C DPA, signal recognition 88.0 0.27 9.4E-06 49.4 3.3 28 205-232 125-152 (328)
253 3be4_A Adenylate kinase; malar 88.0 0.15 5.2E-06 47.2 1.4 27 208-234 4-30 (217)
254 2ewv_A Twitching motility prot 87.9 0.17 5.8E-06 51.6 1.7 27 206-232 133-159 (372)
255 2ze6_A Isopentenyl transferase 87.9 0.18 6.3E-06 48.2 1.9 24 212-235 4-27 (253)
256 4b3f_X DNA-binding protein smu 87.9 0.44 1.5E-05 51.8 5.1 21 212-232 208-228 (646)
257 2ius_A DNA translocase FTSK; n 87.9 2.1 7.3E-05 45.7 10.3 47 203-249 161-211 (512)
258 2bwj_A Adenylate kinase 5; pho 87.8 0.13 4.6E-06 46.0 0.8 28 207-234 10-37 (199)
259 1hqc_A RUVB; extended AAA-ATPa 87.8 0.26 9E-06 47.7 3.0 28 209-236 38-65 (324)
260 2zej_A Dardarin, leucine-rich 87.6 0.16 5.3E-06 45.2 1.1 22 211-232 4-25 (184)
261 3syl_A Protein CBBX; photosynt 87.6 0.18 6.2E-06 48.6 1.7 25 208-232 66-90 (309)
262 1njg_A DNA polymerase III subu 87.5 0.18 6.1E-06 45.3 1.5 23 211-233 47-69 (250)
263 3m6a_A ATP-dependent protease 87.5 0.19 6.7E-06 53.7 2.0 33 204-236 103-135 (543)
264 2r44_A Uncharacterized protein 87.4 0.19 6.4E-06 49.3 1.7 30 208-237 45-74 (331)
265 4f4c_A Multidrug resistance pr 87.4 0.19 6.5E-06 59.5 2.0 33 202-234 1098-1130(1321)
266 1vt4_I APAF-1 related killer D 87.4 1 3.5E-05 52.6 7.8 39 209-247 150-193 (1221)
267 2iw3_A Elongation factor 3A; a 87.3 0.18 6.1E-06 58.1 1.6 30 202-231 454-483 (986)
268 1z2a_A RAS-related protein RAB 87.3 0.2 6.8E-06 42.8 1.6 22 211-232 7-28 (168)
269 2dyk_A GTP-binding protein; GT 87.3 0.2 6.8E-06 42.6 1.5 23 211-233 3-25 (161)
270 1nks_A Adenylate kinase; therm 87.3 0.16 5.4E-06 45.0 0.9 23 211-233 3-25 (194)
271 3kta_A Chromosome segregation 87.2 0.19 6.6E-06 44.6 1.5 29 202-231 20-48 (182)
272 1odf_A YGR205W, hypothetical 3 87.2 0.19 6.6E-06 49.5 1.7 27 206-232 28-54 (290)
273 1kao_A RAP2A; GTP-binding prot 87.1 0.2 6.9E-06 42.5 1.5 23 211-233 5-27 (167)
274 2pt5_A Shikimate kinase, SK; a 87.1 0.23 7.8E-06 43.4 1.9 24 211-234 2-25 (168)
275 2wjg_A FEOB, ferrous iron tran 87.0 0.21 7E-06 44.0 1.5 23 210-232 8-30 (188)
276 1m7g_A Adenylylsulfate kinase; 86.9 0.22 7.5E-06 45.8 1.7 28 206-233 22-49 (211)
277 1q3t_A Cytidylate kinase; nucl 86.9 0.23 7.8E-06 46.6 1.9 27 207-233 14-40 (236)
278 3sr0_A Adenylate kinase; phosp 86.9 0.21 7E-06 46.9 1.5 31 211-244 2-32 (206)
279 2nzj_A GTP-binding protein REM 86.9 0.2 6.9E-06 43.2 1.4 22 211-232 6-27 (175)
280 1ak2_A Adenylate kinase isoenz 86.8 0.23 8E-06 46.4 1.9 26 209-234 16-41 (233)
281 3tlx_A Adenylate kinase 2; str 86.7 0.21 7.2E-06 47.4 1.6 26 208-233 28-53 (243)
282 4eaq_A DTMP kinase, thymidylat 86.7 0.23 7.9E-06 46.9 1.8 30 205-234 22-51 (229)
283 1zak_A Adenylate kinase; ATP:A 86.7 0.19 6.7E-06 46.4 1.3 27 208-234 4-30 (222)
284 3sop_A Neuronal-specific septi 86.7 0.18 6.1E-06 49.2 1.0 23 211-233 4-26 (270)
285 1ni3_A YCHF GTPase, YCHF GTP-b 86.6 0.22 7.4E-06 51.6 1.7 29 203-231 14-42 (392)
286 1um8_A ATP-dependent CLP prote 86.5 0.35 1.2E-05 48.5 3.2 28 209-236 72-99 (376)
287 1e6c_A Shikimate kinase; phosp 86.5 0.22 7.7E-06 43.5 1.5 24 211-234 4-27 (173)
288 3jvv_A Twitching mobility prot 86.5 0.22 7.6E-06 50.7 1.7 27 206-232 120-146 (356)
289 1ypw_A Transitional endoplasmi 86.5 0.35 1.2E-05 54.3 3.4 31 206-236 235-265 (806)
290 2qgz_A Helicase loader, putati 86.4 0.23 7.9E-06 49.1 1.7 25 209-233 152-176 (308)
291 2oap_1 GSPE-2, type II secreti 86.4 0.24 8.2E-06 52.9 1.9 33 204-236 255-287 (511)
292 1u8z_A RAS-related protein RAL 86.4 0.24 8.1E-06 42.1 1.6 22 211-232 6-27 (168)
293 1z08_A RAS-related protein RAB 86.3 0.24 8.3E-06 42.5 1.6 22 211-232 8-29 (170)
294 1e4v_A Adenylate kinase; trans 86.3 0.22 7.6E-06 45.8 1.4 24 211-234 2-25 (214)
295 2pbr_A DTMP kinase, thymidylat 86.3 0.24 8.1E-06 44.0 1.6 23 211-233 2-24 (195)
296 2z0h_A DTMP kinase, thymidylat 86.2 0.23 7.8E-06 44.4 1.4 22 212-233 3-24 (197)
297 1ek0_A Protein (GTP-binding pr 86.2 0.25 8.4E-06 42.2 1.6 23 211-233 5-27 (170)
298 2ce2_X GTPase HRAS; signaling 86.2 0.21 7.1E-06 42.3 1.0 22 211-232 5-26 (166)
299 1c1y_A RAS-related protein RAP 86.1 0.25 8.6E-06 42.1 1.6 22 211-232 5-26 (167)
300 2erx_A GTP-binding protein DI- 86.0 0.25 8.5E-06 42.3 1.5 22 211-232 5-26 (172)
301 3cr8_A Sulfate adenylyltranfer 86.0 0.11 3.6E-06 56.2 -1.1 29 205-233 365-393 (552)
302 3q85_A GTP-binding protein REM 86.0 0.24 8.3E-06 42.5 1.4 22 211-232 4-25 (169)
303 2c9o_A RUVB-like 1; hexameric 85.8 0.29 9.8E-06 50.9 2.1 27 209-235 63-89 (456)
304 3a4m_A L-seryl-tRNA(SEC) kinas 85.8 0.39 1.3E-05 46.0 2.9 25 208-232 3-27 (260)
305 1r2q_A RAS-related protein RAB 85.7 0.27 9.3E-06 41.9 1.6 22 211-232 8-29 (170)
306 1uf9_A TT1252 protein; P-loop, 85.6 0.32 1.1E-05 43.6 2.1 23 210-232 9-31 (203)
307 1wms_A RAB-9, RAB9, RAS-relate 85.5 0.27 9.4E-06 42.5 1.5 22 211-232 9-30 (177)
308 2bjv_A PSP operon transcriptio 85.5 0.6 2.1E-05 44.1 4.1 41 209-249 29-71 (265)
309 1r8s_A ADP-ribosylation factor 85.4 0.27 9.1E-06 42.0 1.4 22 211-232 2-23 (164)
310 1tq4_A IIGP1, interferon-induc 85.4 0.21 7E-06 52.1 0.8 21 211-231 71-91 (413)
311 3r20_A Cytidylate kinase; stru 85.4 0.26 9E-06 47.3 1.5 38 210-250 10-47 (233)
312 1ypw_A Transitional endoplasmi 85.4 0.34 1.2E-05 54.4 2.6 50 206-255 508-564 (806)
313 1z0j_A RAB-22, RAS-related pro 85.3 0.28 9.7E-06 41.9 1.5 23 211-233 8-30 (170)
314 2iw3_A Elongation factor 3A; a 85.3 0.22 7.4E-06 57.3 1.0 34 202-235 692-725 (986)
315 3kl4_A SRP54, signal recogniti 85.3 1.1 3.8E-05 46.8 6.3 26 207-232 95-120 (433)
316 3bc1_A RAS-related protein RAB 85.3 0.29 9.8E-06 42.8 1.6 22 211-232 13-34 (195)
317 1ky3_A GTP-binding protein YPT 85.2 0.29 9.8E-06 42.4 1.5 23 211-233 10-32 (182)
318 2hxs_A RAB-26, RAS-related pro 85.2 0.3 1E-05 42.3 1.7 22 211-232 8-29 (178)
319 2ged_A SR-beta, signal recogni 85.2 0.29 9.8E-06 43.4 1.5 24 210-233 49-72 (193)
320 2fna_A Conserved hypothetical 85.2 0.15 5.2E-06 49.4 -0.3 33 210-243 31-63 (357)
321 3g5u_A MCG1178, multidrug resi 85.1 0.34 1.2E-05 57.2 2.5 35 202-236 1052-1086(1284)
322 3co5_A Putative two-component 85.1 0.16 5.3E-06 44.1 -0.3 26 209-234 27-52 (143)
323 3q72_A GTP-binding protein RAD 85.1 0.21 7.2E-06 42.8 0.6 22 211-232 4-25 (166)
324 1g16_A RAS-related protein SEC 85.0 0.25 8.6E-06 42.3 1.1 23 211-233 5-27 (170)
325 1m2o_B GTP-binding protein SAR 85.0 0.26 8.8E-06 44.2 1.1 25 208-232 22-46 (190)
326 2zan_A Vacuolar protein sortin 84.9 0.45 1.6E-05 49.4 3.1 24 210-233 168-191 (444)
327 4dsu_A GTPase KRAS, isoform 2B 84.9 0.3 1E-05 42.6 1.5 23 211-233 6-28 (189)
328 3ux8_A Excinuclease ABC, A sub 84.8 0.19 6.7E-06 54.9 0.3 27 203-229 342-368 (670)
329 1upt_A ARL1, ADP-ribosylation 84.7 0.32 1.1E-05 41.8 1.6 24 209-232 7-30 (171)
330 3tw8_B RAS-related protein RAB 84.7 0.27 9.4E-06 42.5 1.1 22 211-232 11-32 (181)
331 2qmh_A HPR kinase/phosphorylas 84.6 0.39 1.3E-05 45.6 2.2 26 208-233 33-58 (205)
332 1sxj_E Activator 1 40 kDa subu 84.6 0.24 8.2E-06 48.7 0.8 28 205-232 32-59 (354)
333 1z0f_A RAB14, member RAS oncog 84.6 0.32 1.1E-05 41.9 1.6 23 211-233 17-39 (179)
334 3gmt_A Adenylate kinase; ssgci 84.5 0.32 1.1E-05 46.8 1.6 24 210-233 9-32 (230)
335 3clv_A RAB5 protein, putative; 84.5 0.32 1.1E-05 42.6 1.5 22 211-232 9-30 (208)
336 4fcw_A Chaperone protein CLPB; 84.4 0.3 1E-05 46.9 1.4 36 210-245 48-85 (311)
337 3ihw_A Centg3; RAS, centaurin, 84.4 0.33 1.1E-05 43.3 1.6 23 211-233 22-44 (184)
338 2qen_A Walker-type ATPase; unk 84.4 0.47 1.6E-05 45.8 2.8 32 209-243 31-62 (350)
339 3g5u_A MCG1178, multidrug resi 84.3 0.33 1.1E-05 57.3 1.9 34 202-235 409-442 (1284)
340 1mh1_A RAC1; GTP-binding, GTPa 84.3 0.35 1.2E-05 42.1 1.7 22 211-232 7-28 (186)
341 2lkc_A Translation initiation 84.3 0.33 1.1E-05 42.0 1.5 25 208-232 7-31 (178)
342 3con_A GTPase NRAS; structural 84.2 0.34 1.2E-05 42.8 1.6 23 211-233 23-45 (190)
343 1qf9_A UMP/CMP kinase, protein 84.2 0.31 1.1E-05 43.0 1.3 24 210-233 7-30 (194)
344 2fn4_A P23, RAS-related protei 84.2 0.28 9.7E-06 42.4 1.0 22 211-232 11-32 (181)
345 1qvr_A CLPB protein; coiled co 84.2 0.87 3E-05 51.2 5.2 27 207-233 189-215 (854)
346 1ega_A Protein (GTP-binding pr 84.2 0.29 1E-05 48.1 1.2 25 208-232 7-31 (301)
347 3j16_B RLI1P; ribosome recycli 84.1 0.39 1.3E-05 52.3 2.3 32 202-233 366-402 (608)
348 2efe_B Small GTP-binding prote 84.1 0.35 1.2E-05 42.0 1.6 22 211-232 14-35 (181)
349 2a9k_A RAS-related protein RAL 84.0 0.35 1.2E-05 42.0 1.6 22 211-232 20-41 (187)
350 1p9r_A General secretion pathw 84.0 0.34 1.1E-05 50.5 1.6 34 199-233 158-191 (418)
351 1tue_A Replication protein E1; 84.0 0.3 1E-05 46.6 1.2 28 206-233 55-82 (212)
352 2oil_A CATX-8, RAS-related pro 83.9 0.35 1.2E-05 42.9 1.5 22 211-232 27-48 (193)
353 1j8m_F SRP54, signal recogniti 83.9 1.3 4.3E-05 43.8 5.7 26 207-232 96-121 (297)
354 3kkq_A RAS-related protein M-R 83.9 0.36 1.2E-05 42.2 1.6 22 211-232 20-41 (183)
355 2iwr_A Centaurin gamma 1; ANK 83.9 0.28 9.5E-06 42.7 0.8 23 211-233 9-31 (178)
356 1g8p_A Magnesium-chelatase 38 83.8 0.33 1.1E-05 47.5 1.4 26 209-234 45-70 (350)
357 1ex7_A Guanylate kinase; subst 83.8 0.34 1.1E-05 44.9 1.4 22 212-233 4-25 (186)
358 2qby_B CDC6 homolog 3, cell di 83.7 0.32 1.1E-05 48.1 1.2 26 207-232 43-68 (384)
359 2cxx_A Probable GTP-binding pr 83.6 0.29 9.9E-06 42.9 0.8 22 211-232 3-24 (190)
360 2g6b_A RAS-related protein RAB 83.6 0.38 1.3E-05 41.8 1.6 23 211-233 12-34 (180)
361 1sxj_A Activator 1 95 kDa subu 83.4 0.59 2E-05 49.4 3.2 28 209-236 77-104 (516)
362 3bwd_D RAC-like GTP-binding pr 83.4 0.39 1.3E-05 41.8 1.6 24 210-233 9-32 (182)
363 2y8e_A RAB-protein 6, GH09086P 83.4 0.32 1.1E-05 41.9 1.0 22 211-232 16-37 (179)
364 2p67_A LAO/AO transport system 83.4 0.33 1.1E-05 48.6 1.2 29 204-232 51-79 (341)
365 3pqc_A Probable GTP-binding pr 83.4 0.31 1.1E-05 42.8 0.9 23 211-233 25-47 (195)
366 1vht_A Dephospho-COA kinase; s 83.3 0.41 1.4E-05 43.9 1.7 23 209-231 4-26 (218)
367 3tkl_A RAS-related protein RAB 83.2 0.39 1.3E-05 42.3 1.6 22 211-232 18-39 (196)
368 3umf_A Adenylate kinase; rossm 83.2 0.39 1.3E-05 45.5 1.6 22 212-233 32-53 (217)
369 1sxj_C Activator 1 40 kDa subu 83.2 0.37 1.3E-05 47.6 1.5 22 212-233 49-70 (340)
370 3c5c_A RAS-like protein 12; GD 83.2 0.39 1.3E-05 42.8 1.5 23 211-233 23-45 (187)
371 1m7b_A RND3/RHOE small GTP-bin 83.2 0.33 1.1E-05 42.9 1.0 22 211-232 9-30 (184)
372 1sxj_D Activator 1 41 kDa subu 83.2 0.41 1.4E-05 46.7 1.8 23 210-232 59-81 (353)
373 2gf9_A RAS-related protein RAB 83.2 0.4 1.4E-05 42.5 1.6 23 211-233 24-46 (189)
374 1uj2_A Uridine-cytidine kinase 83.2 0.38 1.3E-05 45.6 1.5 23 211-233 24-46 (252)
375 1nrj_B SR-beta, signal recogni 83.1 0.4 1.4E-05 43.5 1.6 23 211-233 14-36 (218)
376 3ake_A Cytidylate kinase; CMP 83.1 0.4 1.4E-05 43.2 1.5 23 211-233 4-26 (208)
377 3ux8_A Excinuclease ABC, A sub 83.1 0.32 1.1E-05 53.2 1.0 24 203-226 38-61 (670)
378 2xb4_A Adenylate kinase; ATP-b 83.1 0.39 1.3E-05 44.7 1.6 23 211-233 2-24 (223)
379 2grj_A Dephospho-COA kinase; T 83.0 0.4 1.4E-05 44.3 1.6 22 211-232 14-35 (192)
380 3k1j_A LON protease, ATP-depen 83.0 0.36 1.2E-05 52.1 1.5 30 205-234 56-85 (604)
381 1svi_A GTP-binding protein YSX 83.0 0.33 1.1E-05 42.9 0.9 23 210-232 24-46 (195)
382 3euj_A Chromosome partition pr 82.8 0.41 1.4E-05 50.8 1.7 29 203-232 24-52 (483)
383 2bov_A RAla, RAS-related prote 82.8 0.42 1.4E-05 42.5 1.6 22 211-232 16-37 (206)
384 2px0_A Flagellar biosynthesis 82.7 0.36 1.2E-05 47.6 1.2 27 206-232 102-128 (296)
385 1vg8_A RAS-related protein RAB 82.7 0.42 1.4E-05 42.6 1.5 23 211-233 10-32 (207)
386 1g41_A Heat shock protein HSLU 82.6 0.65 2.2E-05 48.8 3.2 29 210-238 51-79 (444)
387 2bme_A RAB4A, RAS-related prot 82.6 0.36 1.2E-05 42.2 1.0 22 211-232 12-33 (186)
388 1ksh_A ARF-like protein 2; sma 82.6 0.41 1.4E-05 42.1 1.4 26 208-233 17-42 (186)
389 4bas_A ADP-ribosylation factor 82.6 0.37 1.3E-05 42.6 1.1 22 211-232 19-40 (199)
390 3reg_A RHO-like small GTPase; 82.4 0.44 1.5E-05 42.3 1.6 23 211-233 25-47 (194)
391 1zd9_A ADP-ribosylation factor 82.4 0.44 1.5E-05 42.3 1.6 22 211-232 24-45 (188)
392 3tqf_A HPR(Ser) kinase; transf 82.4 0.66 2.2E-05 43.2 2.7 25 208-232 15-39 (181)
393 3lxx_A GTPase IMAP family memb 82.3 0.43 1.5E-05 44.5 1.5 23 211-233 31-53 (239)
394 2www_A Methylmalonic aciduria 82.3 0.43 1.5E-05 48.1 1.6 24 209-232 74-97 (349)
395 1z06_A RAS-related protein RAB 82.2 0.45 1.5E-05 42.1 1.5 22 211-232 22-43 (189)
396 1zbd_A Rabphilin-3A; G protein 82.2 0.45 1.5E-05 42.5 1.5 22 211-232 10-31 (203)
397 2f1r_A Molybdopterin-guanine d 82.1 0.19 6.7E-06 45.7 -0.9 24 210-233 3-26 (171)
398 4edh_A DTMP kinase, thymidylat 82.1 1.2 4E-05 41.8 4.5 25 208-232 5-29 (213)
399 1fzq_A ADP-ribosylation factor 82.0 0.33 1.1E-05 43.1 0.5 23 210-232 17-39 (181)
400 3t5g_A GTP-binding protein RHE 82.0 0.41 1.4E-05 41.7 1.2 22 211-232 8-29 (181)
401 1x3s_A RAS-related protein RAB 82.0 0.47 1.6E-05 41.7 1.6 22 211-232 17-38 (195)
402 2atv_A RERG, RAS-like estrogen 82.0 0.47 1.6E-05 42.3 1.5 23 210-232 29-51 (196)
403 2orw_A Thymidine kinase; TMTK, 81.9 0.41 1.4E-05 43.7 1.2 25 208-232 2-26 (184)
404 2a5j_A RAS-related protein RAB 81.8 0.47 1.6E-05 42.1 1.5 23 211-233 23-45 (191)
405 3tqc_A Pantothenate kinase; bi 81.7 0.45 1.6E-05 47.8 1.5 22 211-232 94-115 (321)
406 1vma_A Cell division protein F 81.7 0.51 1.7E-05 47.0 1.8 27 206-232 101-127 (306)
407 2fh5_B SR-beta, signal recogni 81.7 0.49 1.7E-05 42.8 1.6 23 211-233 9-31 (214)
408 3dz8_A RAS-related protein RAB 81.6 0.39 1.3E-05 42.7 0.9 23 211-233 25-47 (191)
409 2p5s_A RAS and EF-hand domain 81.6 0.49 1.7E-05 42.4 1.5 23 211-233 30-52 (199)
410 2cjw_A GTP-binding protein GEM 81.5 0.49 1.7E-05 42.6 1.5 22 211-232 8-29 (192)
411 3t1o_A Gliding protein MGLA; G 81.4 0.51 1.7E-05 41.4 1.6 22 211-232 16-37 (198)
412 2ffh_A Protein (FFH); SRP54, s 81.3 2.1 7.3E-05 44.6 6.5 25 208-232 97-121 (425)
413 3nbx_X ATPase RAVA; AAA+ ATPas 81.3 0.48 1.6E-05 50.4 1.6 30 206-235 38-67 (500)
414 2fg5_A RAB-22B, RAS-related pr 81.2 0.43 1.5E-05 42.5 1.0 23 211-233 25-47 (192)
415 2ohf_A Protein OLA1, GTP-bindi 81.1 0.57 1.9E-05 48.6 2.0 28 205-232 18-45 (396)
416 4f4c_A Multidrug resistance pr 81.1 0.49 1.7E-05 56.0 1.7 33 203-235 438-470 (1321)
417 1moz_A ARL1, ADP-ribosylation 80.9 0.3 1E-05 42.7 -0.2 25 208-232 17-41 (183)
418 1udx_A The GTP-binding protein 80.9 0.39 1.3E-05 49.9 0.7 33 200-232 148-180 (416)
419 2h17_A ADP-ribosylation factor 80.8 0.39 1.3E-05 42.3 0.6 22 211-232 23-44 (181)
420 1f6b_A SAR1; gtpases, N-termin 80.8 0.34 1.2E-05 43.8 0.2 23 210-232 26-48 (198)
421 3a8t_A Adenylate isopentenyltr 80.8 0.55 1.9E-05 47.7 1.7 28 208-235 39-66 (339)
422 4akg_A Glutathione S-transfera 80.8 11 0.00038 47.8 13.6 141 208-396 1266-1410(2695)
423 2iut_A DNA translocase FTSK; n 80.7 17 0.00057 39.4 13.3 49 203-251 208-260 (574)
424 1iqp_A RFCS; clamp loader, ext 80.7 0.56 1.9E-05 45.0 1.7 25 208-232 45-69 (327)
425 2fu5_C RAS-related protein RAB 80.6 0.38 1.3E-05 42.1 0.4 22 211-232 10-31 (183)
426 3oes_A GTPase rhebl1; small GT 80.6 0.47 1.6E-05 42.6 1.0 24 210-233 25-48 (201)
427 1zj6_A ADP-ribosylation factor 80.5 0.47 1.6E-05 41.9 1.0 24 209-232 16-39 (187)
428 2f7s_A C25KG, RAS-related prot 80.3 0.53 1.8E-05 42.6 1.3 23 211-233 27-49 (217)
429 2ga8_A Hypothetical 39.9 kDa p 80.2 0.64 2.2E-05 47.6 2.0 27 206-232 19-47 (359)
430 2q3h_A RAS homolog gene family 80.2 0.55 1.9E-05 41.8 1.4 22 211-232 22-43 (201)
431 3cbq_A GTP-binding protein REM 80.1 0.44 1.5E-05 43.0 0.7 21 211-231 25-45 (195)
432 3cph_A RAS-related protein SEC 80.1 0.6 2E-05 41.8 1.6 22 211-232 22-43 (213)
433 1gtv_A TMK, thymidylate kinase 80.0 0.23 7.8E-06 45.1 -1.3 22 212-233 3-24 (214)
434 2gf0_A GTP-binding protein DI- 79.9 0.51 1.7E-05 41.7 1.0 23 210-232 9-31 (199)
435 2ew1_A RAS-related protein RAB 79.8 0.51 1.7E-05 43.0 1.0 22 211-232 28-49 (201)
436 2il1_A RAB12; G-protein, GDP, 79.8 0.51 1.8E-05 42.1 1.0 22 211-232 28-49 (192)
437 3k53_A Ferrous iron transport 79.8 0.5 1.7E-05 45.2 1.0 22 211-232 5-26 (271)
438 2bcg_Y Protein YP2, GTP-bindin 79.7 0.52 1.8E-05 42.3 1.1 22 211-232 10-31 (206)
439 2h57_A ADP-ribosylation factor 79.7 0.41 1.4E-05 42.4 0.3 23 211-233 23-45 (190)
440 1gwn_A RHO-related GTP-binding 79.6 0.53 1.8E-05 43.0 1.0 22 211-232 30-51 (205)
441 2o52_A RAS-related protein RAB 79.5 0.5 1.7E-05 42.6 0.8 22 211-232 27-48 (200)
442 2qu8_A Putative nucleolar GTP- 79.3 0.6 2.1E-05 43.0 1.4 22 211-232 31-52 (228)
443 1ojl_A Transcriptional regulat 79.3 1 3.5E-05 44.2 3.1 43 208-250 24-68 (304)
444 2chq_A Replication factor C sm 79.3 0.68 2.3E-05 44.2 1.8 25 208-232 37-61 (319)
445 2atx_A Small GTP binding prote 79.2 0.55 1.9E-05 41.6 1.0 22 211-232 20-41 (194)
446 3q3j_B RHO-related GTP-binding 79.1 0.66 2.3E-05 42.5 1.6 22 211-232 29-50 (214)
447 4gzl_A RAS-related C3 botulinu 79.1 0.58 2E-05 42.3 1.2 23 210-232 31-53 (204)
448 3szr_A Interferon-induced GTP- 79.0 0.47 1.6E-05 51.5 0.6 34 199-232 30-68 (608)
449 2h92_A Cytidylate kinase; ross 79.0 0.83 2.9E-05 41.7 2.2 26 209-234 3-28 (219)
450 3zvl_A Bifunctional polynucleo 78.9 2.8 9.5E-05 43.1 6.4 26 208-233 257-282 (416)
451 2hf9_A Probable hydrogenase ni 78.7 0.55 1.9E-05 42.9 0.9 23 210-232 39-61 (226)
452 2fv8_A H6, RHO-related GTP-bin 78.5 0.59 2E-05 42.2 1.0 23 211-233 27-49 (207)
453 2b6h_A ADP-ribosylation factor 78.5 0.51 1.7E-05 42.3 0.6 23 210-232 30-52 (192)
454 2qnr_A Septin-2, protein NEDD5 78.3 0.51 1.7E-05 46.5 0.5 21 212-232 21-41 (301)
455 1a7j_A Phosphoribulokinase; tr 78.1 0.64 2.2E-05 45.6 1.2 24 209-232 5-28 (290)
456 2yc2_C IFT27, small RAB-relate 78.1 0.44 1.5E-05 42.4 0.0 23 210-232 21-43 (208)
457 3upu_A ATP-dependent DNA helic 78.1 1 3.5E-05 46.7 2.8 40 211-250 47-90 (459)
458 3crm_A TRNA delta(2)-isopenten 78.1 0.72 2.4E-05 46.5 1.6 24 211-234 7-30 (323)
459 2gco_A H9, RHO-related GTP-bin 78.0 0.63 2.2E-05 41.8 1.0 22 211-232 27-48 (201)
460 1sxj_B Activator 1 37 kDa subu 78.0 0.8 2.7E-05 43.8 1.8 23 210-232 43-65 (323)
461 1np6_A Molybdopterin-guanine d 77.9 0.73 2.5E-05 42.0 1.4 22 211-232 8-29 (174)
462 2hup_A RAS-related protein RAB 77.6 0.65 2.2E-05 41.9 1.0 23 211-233 31-53 (201)
463 2j0v_A RAC-like GTP-binding pr 77.5 0.67 2.3E-05 41.8 1.0 22 211-232 11-32 (212)
464 3p32_A Probable GTPase RV1496/ 77.5 4.4 0.00015 40.5 7.2 26 207-232 77-102 (355)
465 4dkx_A RAS-related protein RAB 77.4 0.79 2.7E-05 42.9 1.6 23 211-233 15-37 (216)
466 2aka_B Dynamin-1; fusion prote 77.3 0.55 1.9E-05 44.9 0.5 23 210-232 27-49 (299)
467 2j37_W Signal recognition part 77.2 2.7 9.2E-05 44.8 5.8 26 207-232 99-124 (504)
468 2j1l_A RHO-related GTP-binding 77.2 0.64 2.2E-05 42.4 0.8 22 211-232 36-57 (214)
469 3th5_A RAS-related C3 botulinu 78.6 0.5 1.7E-05 42.4 0.0 25 208-232 29-53 (204)
470 3lxw_A GTPase IMAP family memb 76.9 0.83 2.9E-05 43.3 1.6 24 210-233 22-45 (247)
471 3cpj_B GTP-binding protein YPT 76.7 0.83 2.9E-05 41.8 1.5 22 211-232 15-36 (223)
472 1ltq_A Polynucleotide kinase; 76.6 0.83 2.8E-05 43.9 1.5 22 211-232 4-25 (301)
473 3thx_A DNA mismatch repair pro 76.6 0.85 2.9E-05 52.2 1.8 32 199-230 652-683 (934)
474 3pxg_A Negative regulator of g 76.6 0.95 3.2E-05 47.3 2.0 26 207-232 199-224 (468)
475 3d3q_A TRNA delta(2)-isopenten 76.6 0.81 2.8E-05 46.5 1.5 24 211-234 9-32 (340)
476 2xtp_A GTPase IMAP family memb 76.3 0.77 2.6E-05 43.3 1.2 23 210-232 23-45 (260)
477 2wsm_A Hydrogenase expression/ 76.2 0.73 2.5E-05 41.9 0.9 24 209-232 30-53 (221)
478 3b1v_A Ferrous iron uptake tra 76.1 0.83 2.9E-05 44.4 1.4 23 210-232 4-26 (272)
479 3llu_A RAS-related GTP-binding 76.1 0.74 2.5E-05 41.2 0.9 22 211-232 22-43 (196)
480 2g3y_A GTP-binding protein GEM 76.0 0.87 3E-05 42.3 1.4 22 211-232 39-60 (211)
481 1wb9_A DNA mismatch repair pro 75.9 0.93 3.2E-05 51.0 1.9 25 207-231 605-629 (800)
482 2ocp_A DGK, deoxyguanosine kin 75.8 0.75 2.6E-05 43.0 0.9 27 208-234 1-27 (241)
483 1xjc_A MOBB protein homolog; s 75.8 0.89 3E-05 41.5 1.4 22 211-232 6-27 (169)
484 3vkg_A Dynein heavy chain, cyt 75.3 11 0.00036 48.7 11.1 77 307-398 1372-1450(3245)
485 2x77_A ADP-ribosylation factor 75.3 0.55 1.9E-05 41.4 -0.2 24 209-232 22-45 (189)
486 3foz_A TRNA delta(2)-isopenten 75.2 1 3.5E-05 45.3 1.8 24 211-234 12-35 (316)
487 3exa_A TRNA delta(2)-isopenten 75.2 1 3.5E-05 45.5 1.7 24 211-234 5-28 (322)
488 1wf3_A GTP-binding protein; GT 75.1 0.89 3.1E-05 44.8 1.3 25 208-232 6-30 (301)
489 2qag_C Septin-7; cell cycle, c 75.1 0.89 3.1E-05 47.3 1.4 21 212-232 34-54 (418)
490 2f6r_A COA synthase, bifunctio 75.0 0.81 2.8E-05 44.4 1.0 21 211-231 77-97 (281)
491 3a1s_A Iron(II) transport prot 74.9 0.98 3.4E-05 43.3 1.5 21 211-231 7-27 (258)
492 1mky_A Probable GTP-binding pr 74.8 0.96 3.3E-05 46.7 1.5 23 210-232 181-203 (439)
493 1qhl_A Protein (cell division 74.8 0.5 1.7E-05 45.1 -0.6 23 210-232 28-50 (227)
494 1u0j_A DNA replication protein 74.7 1.1 3.9E-05 43.9 1.9 22 211-232 106-127 (267)
495 4djt_A GTP-binding nuclear pro 74.4 0.49 1.7E-05 42.9 -0.8 22 211-232 13-34 (218)
496 1ko7_A HPR kinase/phosphatase; 74.4 1.4 4.9E-05 44.1 2.6 37 208-244 143-183 (314)
497 4aby_A DNA repair protein RECN 74.2 0.38 1.3E-05 48.7 -1.7 33 196-229 47-80 (415)
498 1p5z_B DCK, deoxycytidine kina 74.1 0.74 2.5E-05 43.8 0.4 28 207-234 22-49 (263)
499 2r8r_A Sensor protein; KDPD, P 74.1 2.7 9.4E-05 40.3 4.4 44 211-255 8-55 (228)
500 3thx_B DNA mismatch repair pro 73.9 0.77 2.6E-05 52.5 0.5 30 201-230 665-694 (918)
No 1
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=2.7e-125 Score=1012.15 Aligned_cols=461 Identities=53% Similarity=0.927 Sum_probs=443.2
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
.++++||+|+|+++++.|||+++++|.+.+|+||+|+||++|++|++||++++|+|||+||||||||+|||||++++..+
T Consensus 27 ~~~~~gE~v~v~~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGrV~DglGrPlD~~~~~~g 106 (600)
T 3vr4_A 27 SEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQ 106 (600)
T ss_dssp TTSCTTCEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTCEECTTCCBHHHHHHHHC
T ss_pred CCCccCCEEEECCCcEEEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhhhhCcCCCcccccccccC
Confidence 46999999999877899999999999999999999999999999999999999999999999999999999999987778
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+.|+++|++.++++.++.|+|.|. +++||.|.+|+++|+|+|+++++|+||+||+..|+|+|| ++|+|+++|+|++++
T Consensus 107 ~~~~~~g~~~~~l~~~~~w~f~p~-~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~g~~~v~~~v~~i~ 184 (600)
T 3vr4_A 107 SNFLGRGVQLPALDHEKQWWFEAT-IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI-ESGSFTIDDPICVIE 184 (600)
T ss_dssp SSBCCTTCCCCSSCSSCCEEEEEC-SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCEEECTTSCCEEEE
T ss_pred ccccccCCcCCCCCcccccccCcc-cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe-cCCcceeceeEEEEe
Confidence 789999999999999999999995 999999999999999999999999999999999999999 999999999999999
Q ss_pred E-CCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 F-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 ~-~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
. +|. ++++|.|+||||.++|+.+|.++++||+||||+||+|+|||||||++|||++|+|||+|+++|++|+++|++||
T Consensus 185 ~~~g~-~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~ 263 (600)
T 3vr4_A 185 TEQGL-KELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVY 263 (600)
T ss_dssp ETTEE-EEECSCEEEETTSCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred ccCCc-ccccccccccccCCCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEE
Confidence 5 566 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
++||||++|+++|+++|++++++. .++++|+||++|++|+|+||.+|++++|+|+|+||||||+|+|||+++||+||
T Consensus 264 ~~iGER~~Ev~e~~~~~~el~d~~---~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 264 VGCGERGNEMTDVVNEFPELIDPN---TGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEECHHHHHHHHHHTTTCBCTT---TCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 999999999999999999988765 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||+++||||+++|||+|+|++|++||||||+++++++++++||||+|++|++|+||++||||+++++|+|+||
T Consensus 341 ~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~i 420 (600)
T 3vr4_A 341 WAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFW 420 (600)
T ss_dssp HHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSCTTSHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCCCCCcchhhhhhhccEEE
Confidence 99999999999999999999999999999999999999876654346899999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
+|||+||++||||||||+.|+||+|+.+++||.. ++++|++++++++++|++|+++++||+ +|+|++-
T Consensus 421 vLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~i~G~d~Ls 490 (600)
T 3vr4_A 421 GLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLS 490 (600)
T ss_dssp CBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCGGGSC
T ss_pred EEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCC
Confidence 9999999999999999999999999999999865 589999999999999999999999999 8999763
No 2
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.1e-126 Score=1019.53 Aligned_cols=462 Identities=56% Similarity=0.981 Sum_probs=391.2
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|+|+++++.|||+++++|.+.+||||+|+||++|++|++||++++|+||||||||||||+|||||++++..+
T Consensus 21 ~~~~~gElv~v~~~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLGrV~DglgrPLd~~~~~~g 100 (588)
T 3mfy_A 21 KGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTG 100 (588)
T ss_dssp ----------------------------------------CCCCCSSSSSCCEEEESTTCTTCEEETTCCSSSSCCCCCS
T ss_pred CCCccCCEEEEcCCceEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHhhccCCCCCcccCcccccc
Confidence 46899999999877899999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+ |+++|+++++|++++.|+|.|. +++||.|.+|+++|+|+|++.++|+||+||+..|+|++|+++|+|+++|+|++++
T Consensus 101 ~-~~~~g~~~~~l~~~~~w~f~p~-~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i~~~g~~~v~~~i~~i~ 178 (588)
T 3mfy_A 101 D-FIARGVTAPALPRDKKWHFIPK-AKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVK 178 (588)
T ss_dssp S-SCCCCCCCCSSCSSCCEEEEEC-CCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCSEEECTTSEEEEEE
T ss_pred c-ccccccccCccccccccccccc-cccCcccccCceEEEEecccceeeeeecCCCCCceEEEeccCCcccccceEEEEe
Confidence 7 9999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred E-CCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEE
Q 011655 162 F-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 240 (480)
Q Consensus 162 ~-~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~ 240 (480)
. +|..++++|.|+||||+++|+++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++||+++++|++||
T Consensus 179 ~~~g~~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~ 258 (588)
T 3mfy_A 179 TPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIY 258 (588)
T ss_dssp CTTCCEEEEESCEEEETTSCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEE
T ss_pred cCCCccccccccccccccCCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEE
Confidence 4 788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchH
Q 011655 241 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 320 (480)
Q Consensus 241 ~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr 320 (480)
++||||++||++|+++|+|++++. .++++|+||++|++|+|+||.+|++++|+|+|+||||||+|+|||+++||+||
T Consensus 259 ~~iGER~~Ev~e~~~~~~el~d~~---~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 259 IGCGERGNEMTDVLEEFPKLKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EECCSSSSHHHHHHHHTTTCEETT---TTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEecccHHHHHHHHHHHHHhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 999999999999999999987765 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEE
Q 011655 321 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFW 400 (480)
Q Consensus 321 ~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i 400 (480)
||+|+||||+++||||+++|||+|+|++|++||||||+++++++++++||||+|++|++|+||++||||+++++|+|+||
T Consensus 336 ~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~sdpi~~~~~~i~dg~i 415 (588)
T 3mfy_A 336 WAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFW 415 (588)
T ss_dssp CCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSCSSCSHHHHHHHHCSEEC
T ss_pred HHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCCCCCcchHHHHHhccCee
Confidence 99999999999999999999999999999999999999976654446899999999999999999999999999999999
Q ss_pred EecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 401 GLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 401 ~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
+|||+||++||||||||+.|+||+|+.+++||.. ++++|++++++++++|++|+++++|++ +|+|++-
T Consensus 416 ~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~i~G~d~Ls 485 (588)
T 3mfy_A 416 ALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALP 485 (588)
T ss_dssp CBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCC
T ss_pred ecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 9999999999999999999999999999999954 689999999999999999999999999 9999763
No 3
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=7.4e-124 Score=997.63 Aligned_cols=456 Identities=58% Similarity=0.984 Sum_probs=437.6
Q ss_pred CCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccCC
Q 011655 2 NGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSG 81 (480)
Q Consensus 2 ~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~~ 81 (480)
+++++||+|+|+++++.|||+++++|.+.+|+||+|+||++|++|++||++++|+|||+||||||||+|||||++++..|
T Consensus 20 ~~~~~gE~v~v~~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGrV~DglG~PlD~~~~~~g 99 (578)
T 3gqb_A 20 LGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG 99 (578)
T ss_dssp TTCCTTEEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTCEECTTSCBHHHHHHHHC
T ss_pred CCCccCCEEEECCCcEEEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhhhhCcCCCcccccccccC
Confidence 46999999999877899999999999999999999999999999999999999999999999999999999999876666
Q ss_pred ccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEEE
Q 011655 82 DVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELE 161 (480)
Q Consensus 82 ~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~~ 161 (480)
+ |+++|++.++++.++.|+|+|. +++||.|.+|+++|+|+|+..+ |++|+||+..|+|+++++.|+||++|+|++++
T Consensus 100 ~-~~~~g~~~~~l~~~~~w~f~p~-~~~g~~v~~G~i~g~v~e~~~i-h~i~~pp~~~g~v~~i~~~G~~~v~~~i~~~~ 176 (578)
T 3gqb_A 100 I-YITRGVVVHALDREKKWAWTPM-VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE 176 (578)
T ss_dssp S-BCCTTCCCCSSCSSSCEEEEEC-CCTTCEECTTCEEEEEEETTEE-EEEECCTTCCEEEEEECCSEEECTTSCSEEET
T ss_pred c-cccccccCCCcCcccccccccc-cccCccccccceeeeecccccc-eecccCCCcCceeEEeccCCcccccceeEEee
Confidence 5 9999999999999999999995 9999999999999999999888 99999999999999999999999999999998
Q ss_pred ECCeEEEEeecccccccCCCCcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEE
Q 011655 162 FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV 241 (480)
Q Consensus 162 ~~~~~~~~~m~~~wpvr~~~p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~ 241 (480)
. | .+++|.|+||+|+++|+.+|.++++||+||||+||+|+|||||||++|||++|+|||+|+++|++|+++|++||+
T Consensus 177 ~-g--~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~~ 253 (578)
T 3gqb_A 177 D-G--TELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNADVVVYV 253 (578)
T ss_dssp T-C--CEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSSCSEEEEE
T ss_pred c-C--ccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccCCCEEEEE
Confidence 3 4 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHH
Q 011655 242 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 321 (480)
Q Consensus 242 ~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~ 321 (480)
+||||++|+++|+++|+|++++. .++++|+||++|++|+|+||.+|++++|+|+|+||||||+|+|||+++||+|||
T Consensus 254 ~iGER~~Ev~e~~~~~~el~d~~---~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~ 330 (578)
T 3gqb_A 254 GSGERGNEMTDVLVEFPELTDPK---TGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRW 330 (578)
T ss_dssp EEEECHHHHHHHHTTGGGCBCTT---TSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHH
T ss_pred EecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHH
Confidence 99999999999999999988765 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEE
Q 011655 322 AEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWG 401 (480)
Q Consensus 322 a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~ 401 (480)
|+|+||||+++||+|+++|||+|+|++|++||||||+++++++ ++||||+|++|++|+||++||||+++++|+|+||+
T Consensus 331 A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~--~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~iv 408 (578)
T 3gqb_A 331 AEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGG--EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWR 408 (578)
T ss_dssp HHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTS--CEEEEEEEEECCCTTTCTTSHHHHHHHTTCSEECC
T ss_pred HHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCC--CCcceEEEEEEEcCCCCCCCcchHHHhhhcCceEE
Confidence 9999999999999999999999999999999999999976543 67999999999999999999999999999999999
Q ss_pred ecHHhhhcCCCCCCccccccccchhhhhhhhcc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 402 LDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 402 Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
|||+||++||||||||+.|+||+|+.+++||.. ++++|++++++++++|++|+++++||+ +|+|++-
T Consensus 409 Lsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~G~d~Ls 477 (578)
T 3gqb_A 409 LDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQ 477 (578)
T ss_dssp BCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTTTGGGCC
T ss_pred ECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 999999999999999999999999999999865 689999999999999999999999999 9999763
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=1.6e-99 Score=803.84 Aligned_cols=358 Identities=26% Similarity=0.322 Sum_probs=332.6
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++. +++.|||++++++.+.+|+|++++||++|++|++||++++||||++|||||||++|+|||+.++
T Consensus 44 l~~~~~gElv~~~-~~~~g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~-- 120 (513)
T 3oaa_A 44 LADCMQGEMISLP-GNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP-- 120 (513)
T ss_dssp CTTCBTTCEEEET-TTEEEEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCS--
T ss_pred CccCCcCCEEEEC-CCCEEEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCC--
Confidence 4689999999996 4589999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+..
T Consensus 121 -------------i~~---------------------------------------------------------------- 123 (513)
T 3oaa_A 121 -------------LDH---------------------------------------------------------------- 123 (513)
T ss_dssp -------------CCC----------------------------------------------------------------
T ss_pred -------------CCc----------------------------------------------------------------
Confidence 110
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
.++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+|+++.|+
T Consensus 124 -----------~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~ 192 (513)
T 3oaa_A 124 -----------DGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIK 192 (513)
T ss_dssp -----------SCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCE
T ss_pred -----------cceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhccCCce
Confidence 13577766666 8999999999999999999999999999999999999999999 568999998886
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .++++|+||+||++|+|+||.+|++++|+|+|+||||||+|+|||+++||
T Consensus 193 ~V~~~IGeR~~ev~e~~~~l----------~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Ds 262 (513)
T 3oaa_A 193 CIYVAIGQKASTISNVVRKL----------EEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDD 262 (513)
T ss_dssp EEEEEESCCHHHHHHHHHHH----------HHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEEecCChHHHHHHHHHH----------hhcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 89999999999999999984 56789999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC-------CC-CCCccceeEEEEEecCCCCCCChhh
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL-------GG-PERTGSVTIVGAVSPPGGDFSDPVT 389 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~-------~~-~~~~GSIT~i~~v~~~~~d~~dpv~ 389 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||+++.. |. ..++||||+||+|++|+||++||||
T Consensus 263 ltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~dD~s~pIp 342 (513)
T 3oaa_A 263 LSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVP 342 (513)
T ss_dssp HHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGGGCCSSHHH
T ss_pred hHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEEEEcCCCCccCcch
Confidence 999999999999999999999999999999999999999997421 00 0147999999999999999999999
Q ss_pred hhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 390 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 390 ~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
+++++|+||||+|||+||++||||||||+.|+||+|..+ ++++|++++.++|++|++|+|+++++++|.+
T Consensus 343 ~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~------~~~~~~~va~~lr~~la~y~el~~~~~~g~~ 412 (513)
T 3oaa_A 343 TNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAA------QTKIMKKLSGGIRTALAQYRELAAFSQFASD 412 (513)
T ss_dssp HHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGG------SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhhhccCCeEEEEehhHHhCCCCCccCccccccccCccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999988 8899999999999999999999999999965
No 5
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.8e-99 Score=797.87 Aligned_cols=361 Identities=24% Similarity=0.334 Sum_probs=330.6
Q ss_pred CCCCccCCEEEec---CCcEEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCccEEecCccccccccccccCccccc
Q 011655 1 MNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTI 76 (480)
Q Consensus 1 l~~a~igE~v~v~---~~~l~gEVi~~~~~~a~iqv~e~t~Gl~-~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~ 76 (480)
++++++||+|+|. +..+.|||+++++|.+.+|+|++|+||+ .|++|++||++++||+|++|||||||++|+|||+.
T Consensus 28 l~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~ 107 (465)
T 3vr4_D 28 VSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNG 107 (465)
T ss_dssp CCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEECGGGTTEEEETTSCBCSCC
T ss_pred CCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecchhhccceeccCCcccCCC
Confidence 4689999999993 2358999999999999999999999999 89999999999999999999999999999999985
Q ss_pred cccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccce
Q 011655 77 AIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDT 156 (480)
Q Consensus 77 ~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~ 156 (480)
++.. .
T Consensus 108 ~~i~---------------~------------------------------------------------------------ 112 (465)
T 3vr4_D 108 PEIL---------------P------------------------------------------------------------ 112 (465)
T ss_dssp CCCC---------------C------------------------------------------------------------
T ss_pred CCCc---------------c------------------------------------------------------------
Confidence 4210 0
Q ss_pred EEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 157 VLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 157 v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.+|++++.+
T Consensus 113 ---------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 113 ---------------EKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp ---------------SEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ---------------cceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 12345544433 78999999999999999999999999999999999999999999999999766
Q ss_pred --C----EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CC
Q 011655 236 --D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MG 308 (480)
Q Consensus 236 --d----v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G 308 (480)
| ++||++||||++||++|+++| .++++|+||++|++|+|+||.+|++++|+|+|+|||||| +|
T Consensus 178 ~~d~~~~~~V~~~iGeR~~Ev~e~~~~~----------~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G 247 (465)
T 3vr4_D 178 LDSSDDFAVVFAAIGITFEEAEFFMEDF----------RQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKG 247 (465)
T ss_dssp SSCSSCEEEEEEEEEECHHHHHHHHHHH----------HHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCceEEEEEEecCCcHHHHHHHHHH----------hhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 899999999999999999984 556889999999999999999999999999999999998 69
Q ss_pred CceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChh
Q 011655 309 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPV 388 (480)
Q Consensus 309 ~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv 388 (480)
+|||+++||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ +++||||+|++|++|+||++|||
T Consensus 248 ~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~-----~~~GSIT~i~tv~~~~dD~~~pI 322 (465)
T 3vr4_D 248 MHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIR-----GLKGSVTQIPILTMPEDDKTHPI 322 (465)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEET-----TCSCEEEEEEEEECGGGCTTSHH
T ss_pred CeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccC-----CCCCcEEEEEEEEecCCCcccch
Confidence 9999999999999999999999999999999999999999999999999985 25799999999999999999999
Q ss_pred hhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhh-hhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcc
Q 011655 389 TSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLW 466 (480)
Q Consensus 389 ~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~ 466 (480)
||++++|+||||+|||+||++||||||||+.|+||+|+.+. +|+ +.++|++++.+++++|++|+|++++++ +|.|.
T Consensus 323 ~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~--~~~~h~~~a~~l~~~~~~~~el~~i~~~~G~d~ 400 (465)
T 3vr4_D 323 PDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGK--TREDHAATMNQLFAAYAQGKQAKELAVVLGESA 400 (465)
T ss_dssp HHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCccc--CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999872 222 348999999999999999999999999 78776
Q ss_pred cc
Q 011655 467 SL 468 (480)
Q Consensus 467 ~~ 468 (480)
+.
T Consensus 401 L~ 402 (465)
T 3vr4_D 401 LS 402 (465)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 6
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=9e-99 Score=792.45 Aligned_cols=360 Identities=24% Similarity=0.350 Sum_probs=330.4
Q ss_pred CCCCccCCEEEec---CCcEEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCccEEecCccccccccccccCccccc
Q 011655 1 MNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTI 76 (480)
Q Consensus 1 l~~a~igE~v~v~---~~~l~gEVi~~~~~~a~iqv~e~t~Gl~-~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~ 76 (480)
++++++||+|+|. +..+.|||++++++.+.+|+|++|+||+ .|++|++||++++||+|++|||||||++|+|||+.
T Consensus 24 l~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~ 103 (464)
T 3gqb_B 24 AKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGL 103 (464)
T ss_dssp CTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEECSTTTTEEEETTCCBCSSS
T ss_pred CCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEeChHhcCCEeccCCcccCCC
Confidence 4689999999993 2348999999999999999999999999 89999999999999999999999999999999985
Q ss_pred cccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccce
Q 011655 77 AIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDT 156 (480)
Q Consensus 77 ~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~ 156 (480)
++ +..
T Consensus 104 ~~---------------i~~------------------------------------------------------------ 108 (464)
T 3gqb_B 104 PP---------------ITP------------------------------------------------------------ 108 (464)
T ss_dssp CC---------------CCC------------------------------------------------------------
T ss_pred cc---------------ccC------------------------------------------------------------
Confidence 31 100
Q ss_pred EEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 157 VLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 157 v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.++||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.+|++++.+
T Consensus 109 ---------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 109 ---------------EKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp ---------------SEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred ---------------cceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 12355654444 78999999999999999999999999999999999999999999999999765
Q ss_pred ---------C----EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 011655 236 ---------D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 302 (480)
Q Consensus 236 ---------d----v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAE 302 (480)
| ++||++||||++|+++|+++| .++++|+||++|++|+|+||.+|++++|+|+|+||
T Consensus 174 ~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l----------~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAE 243 (464)
T 3gqb_B 174 RPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF----------ERTGALSRSVLFLNKADDPTIERILTPRMALTVAE 243 (464)
T ss_dssp CHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHH----------HHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCceEEEEEEecCchHHHHHHHHHh----------hhcccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5 899999999999999999984 55688999999999999999999999999999999
Q ss_pred HHHH-CCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCC
Q 011655 303 YFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG 381 (480)
Q Consensus 303 yfrd-~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~ 381 (480)
|||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+++ +++||||+|++|++|+
T Consensus 244 yfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~-----~~~GSIT~l~~v~~~~ 318 (464)
T 3gqb_B 244 YLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVE-----GKKGSVTQIPILSMPD 318 (464)
T ss_dssp HHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBT-----TCSCEEEEEEEEEETT
T ss_pred HHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccC-----CCCCcEEEEEEEEccC
Confidence 9998 699999999999999999999999999999999999999999999999999985 2579999999999999
Q ss_pred CCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhh-hhhccCCHHHHHHHHHHHHHHHhhhhHHHHH
Q 011655 382 GDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREVLQREDDLNEIV 460 (480)
Q Consensus 382 ~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li 460 (480)
||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.+. +|+ +.++|++++.++++.|++|+++++++
T Consensus 319 dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~--~~~~h~~~a~~l~~~~~~~~el~~i~ 396 (464)
T 3gqb_B 319 DDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGK--TREDHKQVSDQLYSAYANGVDIRKLV 396 (464)
T ss_dssp SCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTT--SCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCccc--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999872 122 34899999999999999999999999
Q ss_pred H-cCCccc
Q 011655 461 Q-VGYLWS 467 (480)
Q Consensus 461 ~-~G~d~~ 467 (480)
+ +|.|.+
T Consensus 397 ~~~G~d~L 404 (464)
T 3gqb_B 397 AIIGEDAL 404 (464)
T ss_dssp SSSCSCCC
T ss_pred HhcCCCCC
Confidence 9 777764
No 7
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=5.6e-99 Score=797.51 Aligned_cols=360 Identities=24% Similarity=0.335 Sum_probs=318.0
Q ss_pred CCCccCCEEEec--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccc
Q 011655 2 NGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAI 78 (480)
Q Consensus 2 ~~a~igE~v~v~--~~-~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~ 78 (480)
+++++||+|+|. ++ .+.|||++++++.+.+|+|++|+||++|++|++||++++||||++|||||||++|||||+.++
T Consensus 31 ~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg~~lLGRV~d~lG~PiDg~~~ 110 (469)
T 2c61_A 31 EPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPR 110 (469)
T ss_dssp SCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC-------------CEEEBCEEEECGGGTTCEEETTSCBSSSCCC
T ss_pred CCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEccccceeeEEcccCCCCCCCCC
Confidence 478999999994 23 478999999999999999999999999999999999999999999999999999999998542
Q ss_pred cCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEE
Q 011655 79 RSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVL 158 (480)
Q Consensus 79 ~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~ 158 (480)
.. .+
T Consensus 111 i~---------------~~------------------------------------------------------------- 114 (469)
T 2c61_A 111 IV---------------PD------------------------------------------------------------- 114 (469)
T ss_dssp CC---------------CS-------------------------------------------------------------
T ss_pred CC---------------cc-------------------------------------------------------------
Confidence 11 00
Q ss_pred EEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCC--
Q 011655 159 ELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-- 235 (480)
Q Consensus 159 ~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~-- 235 (480)
..||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++||+++.+
T Consensus 115 --------------~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~ 180 (469)
T 2c61_A 115 --------------QLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPG 180 (469)
T ss_dssp --------------EEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTT
T ss_pred --------------ccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 1244544433 78999999999999999999999999999999999999999999999998764
Q ss_pred ----CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH-HCCCc
Q 011655 236 ----DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYN 310 (480)
Q Consensus 236 ----dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfr-d~G~d 310 (480)
+++||++||||++|+++|+++| .+.++|+||++|++|+|+||.+|++++|+|+|+||||| |+|+|
T Consensus 181 ~~~~~~~V~~~iGER~~Ev~e~~~~~----------~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~d 250 (469)
T 2c61_A 181 SESAFAVVFAAMGITNEEAQYFMSDF----------EKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMH 250 (469)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHHHH----------HHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCCcEEEEEEccCCcHHHHHHHHHH----------HhccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 6899999999999999999985 56789999999999999999999999999999999999 59999
Q ss_pred eeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhh
Q 011655 311 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTS 390 (480)
Q Consensus 311 Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~ 390 (480)
||+++||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ .++||||+|++|++|+||++|||||
T Consensus 251 VLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~-----~~~GSIT~i~~v~~~~dD~~dPI~~ 325 (469)
T 2c61_A 251 VLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK-----GAKGSVTQIPILSMPGDDITHPIPD 325 (469)
T ss_dssp EEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBT-----TSSCEEEEEEEEECCSCTTTSCCCC
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccC-----CCCCceeeeeeeecCCCCcCcchHH
Confidence 99999999999999999999999999999999999999999999999985 2579999999999999999999999
Q ss_pred hhhceecEEEEecHHhhhcCCCCCCccccccccchhhh-hhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcccc
Q 011655 391 ATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL-ESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSL 468 (480)
Q Consensus 391 ~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l-~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~~~ 468 (480)
++++|+||||+|||+||++||||||||+.|+||+|+.+ .+|| ++++|++++.++++.|++|++++++++ +|.+.+.
T Consensus 326 ~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~--~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G~~~l~ 403 (469)
T 2c61_A 326 LSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGK--TREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALS 403 (469)
T ss_dssp CGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred HHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999999999999999999999999999999999984 5666 569999999999999999999999999 7877653
No 8
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=2.8e-98 Score=795.73 Aligned_cols=356 Identities=24% Similarity=0.325 Sum_probs=334.3
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++.++ +.|+|++++++.+.+++|+++.||+.|++|++||++++||+|++|||||||++|+|||+.++
T Consensus 44 l~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~-- 120 (502)
T 2qe7_A 44 LEKVMAGELLEFENG-VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP-- 120 (502)
T ss_dssp CTTCBTTEEEEETTS-CEEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCC--
T ss_pred CCCCCCCCEEEECCC-CEEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEEEccCCCCCCCCCC--
Confidence 468999999999653 67999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+.
T Consensus 121 -------------i~----------------------------------------------------------------- 122 (502)
T 2qe7_A 121 -------------IE----------------------------------------------------------------- 122 (502)
T ss_dssp -------------CC-----------------------------------------------------------------
T ss_pred -------------CC-----------------------------------------------------------------
Confidence 10
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
..++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+|++++|+
T Consensus 123 ----------~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 123 ----------TAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp ----------CCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred ----------CCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 124688888887 8999999999999999999999999999999999999999999 569999999995
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .+.++|+||+||++|+|+||.+|++++|+|+|+||||||+|+|||+++||
T Consensus 193 ~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Ds 262 (502)
T 2qe7_A 193 CIYVAIGQKQSTVAGVVETL----------RQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDD 262 (502)
T ss_dssp EEEEEESCCHHHHHHHHHHH----------HHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEECCCcchHHHHHHHHH----------hhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 79999999999999999984 56789999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||++++.+ ++||||+|++|++|+||++||||+++++|+|
T Consensus 263 ltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~---~~GSITal~~v~~~~dD~s~pI~~~~~si~D 339 (502)
T 2qe7_A 263 LSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEK---GGGSLTALPFIETQAGDVSAYIPTNVISITD 339 (502)
T ss_dssp HHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTT---TCCEEEEEEEEECSTTCCSSHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccC---CCcceeEEEEEEccCCCcccchhHHHhhhcC
Confidence 9999999999999999999999999999999999999999986421 3599999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCcc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLW 466 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d~ 466 (480)
|||+|||+||++||||||||+.|+||+|+.+ +.++|++++.++|++|++|+|+++++++|.|-
T Consensus 340 gqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~------~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l 402 (502)
T 2qe7_A 340 GQIFLESDLFYSGVRPAVNVGISVSRVGGAA------QIKAMKKVAGTLRLDLAQYRELQAFAQFGSDL 402 (502)
T ss_dssp EEEEECHHHHTTTCSSCBCTTTCEESSGGGG------SCHHHHHHHHHHHHHHHHHHHGGGSTTCCCCT
T ss_pred cEEEEehhHhhCCCCceeCcccccccCCCcc------CCHHHHHHHHHHHHHHhhhHHHHHHHHhccCC
Confidence 9999999999999999999999999999998 88999999999999999999999999999763
No 9
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.8e-98 Score=797.81 Aligned_cols=356 Identities=23% Similarity=0.308 Sum_probs=334.3
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++..+++.|||++++++.+.+++|+++.||++|++|++||++++||+|++|||||+|++|+|||+.++
T Consensus 56 l~~~~~gEl~~i~~~g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~-- 133 (515)
T 2r9v_A 56 LNKVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGP-- 133 (515)
T ss_dssp CTTCCTTEEEEETTTCCEEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCC--
T ss_pred CCCCCCCCEEEEecCCeEEEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCC--
Confidence 468999999999533467999999999999999999999999999999999999999999999999999999998431
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+
T Consensus 134 -------------i------------------------------------------------------------------ 134 (515)
T 2r9v_A 134 -------------I------------------------------------------------------------------ 134 (515)
T ss_dssp -------------C------------------------------------------------------------------
T ss_pred -------------C------------------------------------------------------------------
Confidence 1
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCCE-
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT- 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~dv- 237 (480)
.+.++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+|++++|+
T Consensus 135 ---------~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 135 ---------NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp ---------CCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred ---------CccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 0124688988887 8999999999999999999999999999999999999999999 569999999995
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .+.++|+||+||++|+|+||.+|++++|+|+|+||||||+|+|||+++||
T Consensus 206 ~V~~~IGeR~~Ev~e~~~~~----------~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Ds 275 (515)
T 2r9v_A 206 CIYVAIGQKKSAIARIIDKL----------RQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDD 275 (515)
T ss_dssp EEEEEESCCHHHHHHHHHHH----------HHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEET
T ss_pred EEEEEcCCCcHHHHHHHHHH----------HhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 79999999999999999984 56789999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||++++.+ ++||||+|++|++|+||++||||+++++|+|
T Consensus 276 lTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~---~~GSITal~~v~~~~~D~s~pI~~~~~si~D 352 (515)
T 2r9v_A 276 LSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKL---GGGSLTALPIVETQANDISAYIPTNVISITD 352 (515)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTT---TSCEEEEEEEEEESTTCTTSHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccC---CCcceEEeeeeeccCCCccccchhhhccccc
Confidence 9999999999999999999999999999999999999999986431 3599999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|+++++++|.|
T Consensus 353 GqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~el~~~~~~G~~ 414 (515)
T 2r9v_A 353 GQIYLEPGLFYAGQRPAINVGLSVSRVGGSA------QIKAMKQVAGMLRIDLAQYRELETFAQFATE 414 (515)
T ss_dssp EEEEBCHHHHHHTCSSCBCTTTCEEGGGTTT------SCHHHHHHHHHHHHHHHHHHHHHTTGGGCSC
T ss_pred eEEEEchHHHhCCCCCeeccccccccCCccc------CCHHHHHHHHHHHHHHhhhhHHHHHHHhccC
Confidence 9999999999999999999999999999998 8899999999999999999999999999965
No 10
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=4.3e-97 Score=783.42 Aligned_cols=352 Identities=27% Similarity=0.428 Sum_probs=324.8
Q ss_pred CCccCCEEEec--CCcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccccccc
Q 011655 3 GAAMYELVRVG--HDNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 79 (480)
Q Consensus 3 ~a~igE~v~v~--~~~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~ 79 (480)
.+.+++.|+|. +.++.+||++ +.++.+.+|+|++|+||++|++|++||++++||+|++|||||||++|+|||+.++
T Consensus 33 ~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiDg~~~- 111 (482)
T 2ck3_D 33 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGP- 111 (482)
T ss_dssp CCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECSGGGBTCEECTTSCBCSSSCS-
T ss_pred cCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeeccccccCCEEcccCcCcCCcCC-
Confidence 46789999995 2358999999 8889999999999999999999999999999999999999999999999998531
Q ss_pred CCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEE
Q 011655 80 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLE 159 (480)
Q Consensus 80 ~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~ 159 (480)
+.
T Consensus 112 --------------~~---------------------------------------------------------------- 113 (482)
T 2ck3_D 112 --------------IK---------------------------------------------------------------- 113 (482)
T ss_dssp --------------CC----------------------------------------------------------------
T ss_pred --------------CC----------------------------------------------------------------
Confidence 10
Q ss_pred EEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcC---CC
Q 011655 160 LEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NS 235 (480)
Q Consensus 160 ~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~ 235 (480)
..++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++|++|. ++
T Consensus 114 -----------~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~ 182 (482)
T 2ck3_D 114 -----------TKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 182 (482)
T ss_dssp -----------CCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCS
T ss_pred -----------ccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCC
Confidence 124688988777 889999999999999999999999999999999999999999999998873 55
Q ss_pred CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc------cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CC
Q 011655 236 DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK------RTTLVANTSNMPVAAREASIYTGITIAEYFRD-MG 308 (480)
Q Consensus 236 dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~------rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd-~G 308 (480)
|++||++||||++||+||+++|. +.++++ ||++|++|+|+||.+|++++|+|+|+|||||| +|
T Consensus 183 ~v~V~~~iGER~rEv~e~~~~~~----------~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G 252 (482)
T 2ck3_D 183 GYSVFAGVGERTREGNDLYHEMI----------ESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252 (482)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHH----------HHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCcchHHHHHHHHhh----------hccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999863 344454 99999999999999999999999999999999 99
Q ss_pred CceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChh
Q 011655 309 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPV 388 (480)
Q Consensus 309 ~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv 388 (480)
+||||++||+||||+|+||||+++||||+++||||++|++|++|||||++ .++||||+|+||++|+||++|||
T Consensus 253 ~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~-------~~~GSIT~i~tv~v~~dD~tdPi 325 (482)
T 2ck3_D 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-------TKKGSITSVQAIYVPADDLTDPA 325 (482)
T ss_dssp SCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSC-------CSSCCEEEEEEEECGGGCTTSHH
T ss_pred CcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcC-------CCCCceeeeEEEEecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999996 36799999999999999999999
Q ss_pred hhhhhceecEEEEecHHhhhcCCCCCCccccccccchh-hhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcc
Q 011655 389 TSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYST-ALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLW 466 (480)
Q Consensus 389 ~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~-~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~ 466 (480)
||++++||||||+|||+||++||||||||+.|+||+|+ .+ ++++|+++++++|++|++|+|+++||+ +|.|.
T Consensus 326 ~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i------~~~~~~~~a~~lr~~la~y~el~~li~i~G~~~ 399 (482)
T 2ck3_D 326 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI------VGSEHYDVARGVQKILQDYKSLQDIIAILGMDE 399 (482)
T ss_dssp HHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHH------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCccc------CCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999984 34 689999999999999999999999999 68775
Q ss_pred c
Q 011655 467 S 467 (480)
Q Consensus 467 ~ 467 (480)
+
T Consensus 400 l 400 (482)
T 2ck3_D 400 L 400 (482)
T ss_dssp S
T ss_pred C
Confidence 5
No 11
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=1.9e-97 Score=790.74 Aligned_cols=355 Identities=23% Similarity=0.312 Sum_probs=332.2
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++.++ +.|+|++++++.+.+++|+++.||+.|+.|.+||++++||+|++|||||||++|+|||+.++
T Consensus 44 l~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~-- 120 (510)
T 2ck3_A 44 LRNVQAEEMVEFSSG-LKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGP-- 120 (510)
T ss_dssp CTTCBTTCEEEETTS-CEEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCC--
T ss_pred CCCCCCCCEEEECCC-CeEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCccceeeEEccCCcCcCCCCC--
Confidence 468999999999653 67999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+.
T Consensus 121 -------------i~----------------------------------------------------------------- 122 (510)
T 2ck3_A 121 -------------IG----------------------------------------------------------------- 122 (510)
T ss_dssp -------------CC-----------------------------------------------------------------
T ss_pred -------------CC-----------------------------------------------------------------
Confidence 10
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCC----
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSN---- 234 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~---- 234 (480)
..++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+++..
T Consensus 123 ----------~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~ 192 (510)
T 2ck3_A 123 ----------SKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 192 (510)
T ss_dssp ----------CSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTS
T ss_pred ----------ccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccc
Confidence 124688888777 8999999999999999999999999999999999999999999 668888865
Q ss_pred ----CC-EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q 011655 235 ----SD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 309 (480)
Q Consensus 235 ----~d-v~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~ 309 (480)
+| +|||++||||++||++|++++ .+.++|+||+||++|+|+||.+|++++|+|+|+||||||+|+
T Consensus 193 ~~~~~d~~~V~~~IGeR~~Ev~~~~~~~----------~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 262 (510)
T 2ck3_A 193 TDEKKKLYCIYVAIGQKRSTVAQLVKRL----------TDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGK 262 (510)
T ss_dssp CCTTTCCEEEEEEESCCHHHHHHHHHHH----------HHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCeEEEEEECCCCcHHHHHHHHHH----------HhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66 599999999999999999984 567899999999999999999999999999999999999999
Q ss_pred ceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhh
Q 011655 310 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVT 389 (480)
Q Consensus 310 dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~ 389 (480)
|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++.+ ++||||+|++|++|+||++||||
T Consensus 263 dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~---~~GSITal~~v~~~~dD~s~pI~ 339 (510)
T 2ck3_A 263 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF---GGGSLTALPVIETQAGDVSAYIP 339 (510)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGG---TSCEEEEEEEEECSTTCTTSHHH
T ss_pred cEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccC---CCcceeEeeeeccCCCCccccch
Confidence 999999999999999999999999999999999999999999999999986421 35999999999999999999999
Q ss_pred hhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 390 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 390 ~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
+++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++++++|.|
T Consensus 340 ~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~------~~~~~~~~a~~lr~~la~y~el~~~~~~G~~ 409 (510)
T 2ck3_A 340 TNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA------QTRAMKQVAGTMKLELAQYREVAAFAQFGSD 409 (510)
T ss_dssp HHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGG------SCHHHHHHHHHHHHHHHHHHHHGGGSSSCSS
T ss_pred HhhhcccceEEEEehhHhhCCCCCcccchhccccccccc------CCHHHHHHHHHHHHHHHhhhHHHHHHHhcCC
Confidence 999999999999999999999999999999999999998 8899999999999999999999999999976
No 12
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=2.4e-97 Score=788.00 Aligned_cols=352 Identities=29% Similarity=0.426 Sum_probs=325.5
Q ss_pred CccCCEEEecC-----C--cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCcccc
Q 011655 4 AAMYELVRVGH-----D--NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKT 75 (480)
Q Consensus 4 a~igE~v~v~~-----~--~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~ 75 (480)
..+|+.|+|.. . ++.+||++ +.++.+.+++|++|+||++|++|++||++++||+|++|||||||++|+|||+
T Consensus 41 ~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiD~ 120 (498)
T 1fx0_B 41 PNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDN 120 (498)
T ss_dssp CCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCEEEESSTTTTCEECTTSCBCSS
T ss_pred cccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcceEecCccceeeEEcccccCCCC
Confidence 57899999952 2 48999999 8889999999999999999999999999999999999999999999999998
Q ss_pred ccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccc
Q 011655 76 IAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKD 155 (480)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~ 155 (480)
.++ +.
T Consensus 121 ~~~---------------i~------------------------------------------------------------ 125 (498)
T 1fx0_B 121 LRP---------------VD------------------------------------------------------------ 125 (498)
T ss_dssp SSC---------------CC------------------------------------------------------------
T ss_pred cCC---------------cC------------------------------------------------------------
Confidence 531 10
Q ss_pred eEEEEEECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcC-
Q 011655 156 TVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS- 233 (480)
Q Consensus 156 ~v~~~~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~- 233 (480)
..++||+++++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++|++|.
T Consensus 126 ---------------~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 126 ---------------TRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp ---------------CSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred ---------------CCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence 024689988887 899999999999999999999999999999999999999999999998873
Q ss_pred --CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc-------cEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 011655 234 --NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK-------RTTLVANTSNMPVAAREASIYTGITIAEYF 304 (480)
Q Consensus 234 --~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~-------rtvvv~~t~d~p~~~r~~a~~~a~tiAEyf 304 (480)
++|++||++||||++|++||+++| .+.++++ ||++|++|+|+||.+|++++++|+|+||||
T Consensus 191 ~~~~~v~V~~~iGER~rEv~e~~~~~----------~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyf 260 (498)
T 1fx0_B 191 KAHGGVSVFGGVGERTREGNDLYMEM----------KESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYF 260 (498)
T ss_dssp TTCSSCEEEEEESCCSHHHHHHHHHH----------HHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHH
T ss_pred hhCCCEEEEEEcccCcHHHHHHHHhh----------hcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 558999999999999999999985 3445555 999999999999999999999999999999
Q ss_pred HH-CCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCC
Q 011655 305 RD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGD 383 (480)
Q Consensus 305 rd-~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d 383 (480)
|| +|+||||++||+||||+|+||||+++||+|+++|||||+|++|++||||||+. ++||||+|++|++|+||
T Consensus 261 rd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~-------~~GSIT~i~tV~v~~dD 333 (498)
T 1fx0_B 261 RDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-------KEGSITSIQAVYVPADD 333 (498)
T ss_dssp TTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCC-------TTCEECCEEEEECGGGC
T ss_pred HHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCC-------CCCceeeeEEEEccCCC
Confidence 99 99999999999999999999999999999999999999999999999999972 57999999999999999
Q ss_pred CCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhh-hhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-
Q 011655 384 FSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTA-LESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ- 461 (480)
Q Consensus 384 ~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~-l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~- 461 (480)
++|||||++++||||||+|||+||++||||||||+.|+||+|+. + ++++|+++++++|++|++|+|+++||+
T Consensus 334 ~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i------~~~~h~~~a~~lr~~la~y~el~~li~i 407 (498)
T 1fx0_B 334 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI------VGEEHYEIAQRVKETLQRYKELQDIIAI 407 (498)
T ss_dssp SSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTT------TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCccc------CCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754 4 689999999999999999999999999
Q ss_pred cCCcccc
Q 011655 462 VGYLWSL 468 (480)
Q Consensus 462 ~G~d~~~ 468 (480)
+|.|.+.
T Consensus 408 ~G~d~ls 414 (498)
T 1fx0_B 408 LGLDELS 414 (498)
T ss_dssp HCSTTSC
T ss_pred hCCCcCC
Confidence 7877653
No 13
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=5.2e-98 Score=794.48 Aligned_cols=355 Identities=24% Similarity=0.327 Sum_probs=333.8
Q ss_pred CCCCccCCEEEecCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCccccccccC
Q 011655 1 MNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRS 80 (480)
Q Consensus 1 l~~a~igE~v~v~~~~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrPLd~~~~~~ 80 (480)
++++.+||+|++.+ ++.|+|++++++.+.+++|+++.||++|+.|.+||++++||+|++|||||||++|+|||+.++
T Consensus 45 l~~~~~ge~~~i~~-g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~-- 121 (507)
T 1fx0_A 45 LDEVMAGELVEFEE-GTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGE-- 121 (507)
T ss_dssp CTTCCTTCCEEETT-CCEEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCC--
T ss_pred CCCccCCCEEEECC-CceEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecCccceeEEEccCCcCCCCCCC--
Confidence 46899999999965 367999999999999999999999999999999999999999999999999999999998531
Q ss_pred CccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCccccceEEEE
Q 011655 81 GDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLEL 160 (480)
Q Consensus 81 ~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~~~~~v~~~ 160 (480)
+.
T Consensus 122 -------------i~----------------------------------------------------------------- 123 (507)
T 1fx0_A 122 -------------IT----------------------------------------------------------------- 123 (507)
T ss_dssp -------------CC-----------------------------------------------------------------
T ss_pred -------------CC-----------------------------------------------------------------
Confidence 10
Q ss_pred EECCeEEEEeecccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHH-HHHHhhcCCCC-E
Q 011655 161 EFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSD-T 237 (480)
Q Consensus 161 ~~~~~~~~~~m~~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~~~~~d-v 237 (480)
..++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+|++++| +
T Consensus 124 ----------~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 193 (507)
T 1fx0_A 124 ----------ASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 193 (507)
T ss_dssp ----------CSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ----------CCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcE
Confidence 124688888777 8999999999999999999999999999999999999999999 56999999999 4
Q ss_pred EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeeccc
Q 011655 238 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADS 317 (480)
Q Consensus 238 ~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Ds 317 (480)
|||++||||++||++|++++ .+.++|+||+||++|+|+||.+|++++|+|+|+||||||+|+|||+++||
T Consensus 194 ~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Ds 263 (507)
T 1fx0_A 194 CVYVAIGQKASSVAQVVTNF----------QERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDD 263 (507)
T ss_dssp EEEEEESCCHHHHHHHHHHT----------GGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEcCCCchHHHHHHHHH----------HhcCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 89999999999999999983 67889999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceec
Q 011655 318 TSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQ 397 (480)
Q Consensus 318 ltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~d 397 (480)
+||||+|+||||+++||||+++||||++|+.+++|+||||+++..+ ++||||+|++|++|+||++||||+++++|+|
T Consensus 264 ltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~---~~GSITal~~v~~~~~D~s~pI~~~~~si~D 340 (507)
T 1fx0_A 264 LSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLL---GEGSMTALPIVETQAGDVSAYIPTNVISITD 340 (507)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTT---TSCEEEECCEEECSTTCTTSHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccC---CCcceeeeeeeeccCCCcccchHHHHHhhcC
Confidence 9999999999999999999999999999999999999999986421 3599999999999999999999999999999
Q ss_pred EEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCc
Q 011655 398 VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYL 465 (480)
Q Consensus 398 g~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~d 465 (480)
|||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|+++++++|.|
T Consensus 341 gqIvLsr~La~~g~yPAIdvl~S~SR~~~~~------~~~~~~~~a~~lr~~la~y~el~~~~~~G~~ 402 (507)
T 1fx0_A 341 GQIFLSADLFNAGIRPAINVGISVSRVGSAA------QIKAMKKVAGKLKLELAQFAELEAFAQFASD 402 (507)
T ss_dssp CBCCCCSSSSSSSCSSCCCTTTCCCTTGGGG------SCHHHHHHHHHHHHHHHHHHHHTTTGGGCSS
T ss_pred cEEEEehhHhhCCCCCccchhhhhccccccC------CCHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 9999999999999999999999999999998 8899999999999999999999999999965
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=4.4e-90 Score=730.76 Aligned_cols=352 Identities=29% Similarity=0.465 Sum_probs=325.4
Q ss_pred CCccCCEEEecC-----C----cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCccEEecCccccccccccccCc
Q 011655 3 GAAMYELVRVGH-----D----NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 72 (480)
Q Consensus 3 ~a~igE~v~v~~-----~----~l~gEVi~-~~~~~a~iqv~e~t~Gl~~G~~V~~tg~~lsV~lG~gLLGrV~DglGrP 72 (480)
.+++||+|+|.. . ++.+||++ +.++.+.+|+|++|.||++|++|++||++++||+|++|||||||++|+|
T Consensus 23 ~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~~~vpvg~~llGrv~d~lG~p 102 (473)
T 1sky_E 23 LPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEP 102 (473)
T ss_dssp CCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEECEEECSGGGTTCEECTTSCB
T ss_pred ccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCcceeeccccceeeEEeecCCc
Confidence 368999999953 2 48999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCCCcc
Q 011655 73 LKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYS 152 (480)
Q Consensus 73 Ld~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g~~~ 152 (480)
||+.++ +.
T Consensus 103 iD~~g~---------------i~--------------------------------------------------------- 110 (473)
T 1sky_E 103 IDLEGD---------------IP--------------------------------------------------------- 110 (473)
T ss_dssp CSSSCC---------------CC---------------------------------------------------------
T ss_pred cCcccc---------------cC---------------------------------------------------------
Confidence 998531 10
Q ss_pred ccceEEEEEECCeEEEEeec-ccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHh
Q 011655 153 LKDTVLELEFQGVKKSFTML-QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~m~-~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
.. ++||++.++| +++|.++++||+||||+||.|+|++||||++|||++|+|||+|+.+|+
T Consensus 111 ------------------~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 111 ------------------ADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp ------------------TTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred ------------------CCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 01 4689988877 799999999999999999999999999999999999999999999988
Q ss_pred hcC---CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-
Q 011655 231 KYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD- 306 (480)
Q Consensus 231 ~~~---~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd- 306 (480)
++. ..+++||++||||++|+++|++++ .+.++|+||++|++++++||+.|++++++++++||||||
T Consensus 173 ~~~~~~~~~i~V~~~iGerttev~el~~~l----------~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~ 242 (473)
T 1sky_E 173 HNIAQEHGGISVFAGVGERTREGNDLYHEM----------KDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDE 242 (473)
T ss_dssp HHHHHHTCCCEEEEEESSCHHHHHHHHHHH----------HHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCcEEEEeeeccCchHHHHHHHHh----------hhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 763 467899999999999999999874 456789999999999999999999999999999999999
Q ss_pred CCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCC
Q 011655 307 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSD 386 (480)
Q Consensus 307 ~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~d 386 (480)
+|+|||+++||+||||+|+||||+++||||+++|||||+|++|++|||||++. ++||||+|+||++|+||++|
T Consensus 243 ~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~-------~~GSIT~i~tv~~~~dD~~d 315 (473)
T 1sky_E 243 QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITST-------AKGSITSIQAIYVPADDYTD 315 (473)
T ss_dssp SCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCB-------SSCEEEEEEECCCSTTCSSS
T ss_pred cCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCC-------CCCceEEEEEEEecCCCCCC
Confidence 89999999999999999999999999999999999999999999999999973 57999999999999999999
Q ss_pred hhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhh-hhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCC
Q 011655 387 PVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTA-LESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGY 464 (480)
Q Consensus 387 pv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~-l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~ 464 (480)
||||++++||||||+|||+||++||||||||+.|+||+|+. + ++++|++++.++|++|++|+|+++|++ +|.
T Consensus 316 pi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~------~~~~~~~~a~~lr~~la~y~e~~~li~i~g~ 389 (473)
T 1sky_E 316 PAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEI------VGEEHYQVARKVQQTLERYKELQDIIAILGM 389 (473)
T ss_dssp HHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhc------CCHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999854 4 579999999999999999999999999 566
Q ss_pred ccc
Q 011655 465 LWS 467 (480)
Q Consensus 465 d~~ 467 (480)
+.+
T Consensus 390 ~~l 392 (473)
T 1sky_E 390 DEL 392 (473)
T ss_dssp TTC
T ss_pred ccC
Confidence 543
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-74 Score=595.72 Aligned_cols=337 Identities=18% Similarity=0.277 Sum_probs=283.8
Q ss_pred cCcccccccccccc--Cccc-cccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeecccccccccc
Q 011655 57 LGPGILGNIFDGIQ--RPLK-TIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 133 (480)
Q Consensus 57 lG~gLLGrV~DglG--rPLd-~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~ 133 (480)
.+.|+|.-.-||.| |.-| +..+.+.|.|++..+. + ...++.||.|.+- +
T Consensus 57 ~~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~i-------r-----~~~lr~gd~v~g~-----~----------- 108 (427)
T 3l0o_A 57 FGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQI-------R-----KFNLNTGDIISGV-----I----------- 108 (427)
T ss_dssp EEEEEEEECTTSCEEEECGGGTTCCCSSCEEECHHHH-------H-----HTTCCTTCEEEEE-----E-----------
T ss_pred eEEEEEEEcCCCceEeeCCccCCCCCCCCeeeCHHHH-------H-----hcCCCCCCEEEEE-----E-----------
Confidence 36677776667765 5554 4445556666653321 1 2257788887542 2
Q ss_pred CCCCCCCcEEEecCCCCccccceEEEEE-ECCeEEEEeecccccccCCCC--cccccCCC-Cccccccceeccccccccc
Q 011655 134 LPPDAMGKVTYVAPAGQYSLKDTVLELE-FQGVKKSFTMLQAWPVRTPRP--VSSKLAAD-TPLLTGQRVLDALFPSVLG 209 (480)
Q Consensus 134 ~pp~~~g~v~~~~~~g~~~~~~~v~~~~-~~~~~~~~~m~~~wpvr~~~p--~~~R~~~~-epl~TGIraID~l~PigkG 209 (480)
-||... +. | ..+.+++ +||...+ ....++++..-.| +.+|..+. +|++||+|+||+|+|||||
T Consensus 109 r~~~~~--------e~-~---~~l~~v~~vng~~p~-~~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrG 175 (427)
T 3l0o_A 109 RKPKEG--------EK-Y---FAMIKIEAINYRPVE-AVNDRVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKG 175 (427)
T ss_dssp ECCCSS--------SC-S---EEEEEEEEETTEEC-----CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTT
T ss_pred eCCCCC--------cc-c---ccceEEEecCCCChH-HhccccccccCCCCCchhhccccccchhccchhhhhcccccCC
Confidence 233311 11 2 2567777 7776544 3366777766655 68999998 9999999999999999999
Q ss_pred cccccCCCCCCCchHHHHHHhhcC---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 285 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~---~~dv-~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~ 285 (480)
||++|||++|+|||+|+++|+++. +.|+ |||++||||++||++|+++ + . .+||++|+|+
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~-------~---~-------G~VV~atade 238 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRES-------T---N-------AIVIAAPFDM 238 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSS-------C---C-------SEEEECCTTS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHH-------h---C-------CeEEEECCCC
Confidence 999999999999999999999863 4564 7999999999999998865 2 2 2899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCC
Q 011655 286 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP 365 (480)
Q Consensus 286 p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~ 365 (480)
||.+|++++++|+++||||||+|+|||+++||+||||+|+||||+++||+|+ +||||++++.+++||||||+++
T Consensus 239 p~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie----- 312 (427)
T 3l0o_A 239 PPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTR----- 312 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEES-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccC-----
Confidence 9999999999999999999999999999999999999999999999999999 6999999999999999999984
Q ss_pred CCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHH
Q 011655 366 ERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRT 444 (480)
Q Consensus 366 ~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~ 444 (480)
++||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|+++++
T Consensus 313 -~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l------~~~~h~~~a~ 385 (427)
T 3l0o_A 313 -EGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELL------LDEETLKKVW 385 (427)
T ss_dssp -SSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGT------SCHHHHHHHH
T ss_pred -CCcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCcccccccccccc------CCHHHHHHHH
Confidence 67999999999999 899999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHhhhhHHHHHH-cCC
Q 011655 445 KAREVLQREDDLNEIVQ-VGY 464 (480)
Q Consensus 445 ~~r~~L~~y~e~~~li~-~G~ 464 (480)
++|++|++|++++++.+ +|.
T Consensus 386 ~lr~~la~y~e~e~l~~ll~~ 406 (427)
T 3l0o_A 386 LLRRMLSAMTEEEGLTLILNK 406 (427)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999998 554
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.7e-71 Score=575.36 Aligned_cols=253 Identities=20% Similarity=0.237 Sum_probs=237.9
Q ss_pred ccccCCC----CccccccceeccccccccccccccCCCCCCCchHHHHHHhhc---CCCCE-EEEEeeCCchhHHHHHHH
Q 011655 184 SSKLAAD----TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDT-VVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 184 ~~R~~~~----epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~---~~~dv-~V~~~iGer~~Ev~e~~~ 255 (480)
.+|..+. +|++||||+||+++|++||||++|||++|+|||||+++|+++ .+.|+ |||++||||++||++|++
T Consensus 145 ~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~ 224 (422)
T 3ice_A 145 NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 224 (422)
T ss_dssp CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHT
T ss_pred CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHH
Confidence 4566666 799999999999999999999999999999999999999875 34565 889999999999999986
Q ss_pred hccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCC
Q 011655 256 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEM 335 (480)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~ 335 (480)
+ + +++||++|+|+||.+|++++++|+++||||||+|+|||+++||+||||+|+||+|+++||+
T Consensus 225 ~-------~----------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ 287 (422)
T 3ice_A 225 L-------V----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 287 (422)
T ss_dssp T-------C----------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCB
T ss_pred H-------h----------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCC
Confidence 4 1 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecC-CCCCCChhhhhhhceecEEEEecHHhhhcCCCCC
Q 011655 336 PADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS 414 (480)
Q Consensus 336 p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~yPA 414 (480)
|+ +|||+++|+.+++||||||+++ ++||||+|+||++| +||++|||+|++++|+||||+|||+||++|||||
T Consensus 288 ps-~Gyp~~~~~~~~rl~erA~~~~------~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPA 360 (422)
T 3ice_A 288 LT-GGVDANALHRPKRFFGAARNVE------EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 360 (422)
T ss_dssp CS-SSCBHHHHHHHHHHHTTCEEES------SSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSC
T ss_pred CC-CCcCHHHHhhhHHHHHhccccC------CCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCc
Confidence 98 9999999999999999999974 67999999999999 8999999999999999999999999999999999
Q ss_pred CccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCcc
Q 011655 415 VNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYLW 466 (480)
Q Consensus 415 Id~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~d~ 466 (480)
|||+.|+||+|+.+ ++++|+++++++|++|++|++++++.. +|...
T Consensus 361 IDvl~S~SR~~~~~------~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~ 407 (422)
T 3ice_A 361 IDYNRSGTRKEELL------TTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 407 (422)
T ss_dssp BCTTTCEESSGGGS------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTT
T ss_pred cCccccccccchhh------CCHHHHHHHHHHHHHHHhCchHHHHHHHHHHhh
Confidence 99999999999998 899999999999999999999999998 66544
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=4.9e-62 Score=514.12 Aligned_cols=351 Identities=26% Similarity=0.389 Sum_probs=319.0
Q ss_pred CCccCCEEEecC---C---cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCC-------ccEEecCccccccccccc
Q 011655 3 GAAMYELVRVGH---D---NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHK-------PLSVELGPGILGNIFDGI 69 (480)
Q Consensus 3 ~a~igE~v~v~~---~---~l~gEVi~~~~~~a~iqv~e~t~Gl~~G~~V~~tg~-------~lsV~lG~gLLGrV~Dgl 69 (480)
++++||+|+|.. . .+.|||+++++|.+.+|+|++|.||++|+.|.+||+ ++++++|+++||||+|++
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~~~~~~~v~~g~~~lgrv~~~l 106 (438)
T 2dpy_A 27 QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGG 106 (438)
T ss_dssp CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTTEEEEEC----------CEEECSGGGTTEEECTT
T ss_pred CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCccccccccEEEEcchhhhhhhhhcc
Confidence 689999999953 2 589999999999999999999999999999999999 999999999999999999
Q ss_pred cCccccccccCCccccCCCCccCCCCcCcccccccccccCCccccCCcceeeeeccccccccccCCCCCCCcEEEecCCC
Q 011655 70 QRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAG 149 (480)
Q Consensus 70 GrPLd~~~~~~~~~~~~~g~~~~~l~~~~~~~f~p~~~~~G~~v~~g~~~g~v~e~~~~~~~i~~pp~~~g~v~~~~~~g 149 (480)
|+|+|+.++ +..
T Consensus 107 g~p~d~~~~---------------~~~----------------------------------------------------- 118 (438)
T 2dpy_A 107 GKPLDGLPA---------------PDT----------------------------------------------------- 118 (438)
T ss_dssp CCBSSSSCC---------------CCC-----------------------------------------------------
T ss_pred CCccCCCCC---------------ccc-----------------------------------------------------
Confidence 999987431 110
Q ss_pred CccccceEEEEEECCeEEEEeecccccccCCC-CcccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHH
Q 011655 150 QYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQA 228 (480)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~~m~~~wpvr~~~-p~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ 228 (480)
.+.||++.++ +++++..+++++.||+++||.++|+++||+++|+|++|+|||||+.+
T Consensus 119 ----------------------~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~ 176 (438)
T 2dpy_A 119 ----------------------LETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGM 176 (438)
T ss_dssp ----------------------SCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHH
T ss_pred ----------------------cccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 1246676544 47899999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q 011655 229 LSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG 308 (480)
Q Consensus 229 ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G 308 (480)
|+++.+++..++.++|+|++|++++.+++ .+...+++++.+++++++++..++.+++.++++||||++++
T Consensus 177 Iag~~~~~~G~i~~~G~r~~ev~~~~~~~----------~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~ 246 (438)
T 2dpy_A 177 MARYTRADVIVVGLIGERGREVKDFIENI----------LGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG 246 (438)
T ss_dssp HHHHSCCSEEEEEEESCCHHHHHHHHHTT----------THHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcccCCCeEEEEEeceecHHHHHHHHhh----------ccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988641 23345789999999999999999999999999999999999
Q ss_pred CceeeecccchHHHHHHHHHhhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChh
Q 011655 309 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPV 388 (480)
Q Consensus 309 ~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv 388 (480)
++|+.++|+++||+.++|++++++++||...|||+++++.+.+++||+++.+ .+.||||+++||+++++|+++|+
T Consensus 247 ~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~-----~~~GsiT~~~tVlv~tHdl~~~i 321 (438)
T 2dpy_A 247 QHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI-----HGGGSITAFYTVLTEGDDQQDPI 321 (438)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCS-----TTSCEEEEEEEEECSSSCSCCHH
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhcc-----CCCCcccceeEEEEeCCCccchh
Confidence 9999999999999999999999999999999999999999999999998731 03499999999999999999999
Q ss_pred hhhhhceecEEEEecHHhhhcCCCCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 389 TSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 389 ~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
+|++..+.||+|++|+.+++.++|||||++.|+||.++.+ ++++|++++.++|++|++|+++++++++|.
T Consensus 322 ad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 391 (438)
T 2dpy_A 322 ADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL------ITEQHYARVRLFKQLLSSFQRNRDLVSVGA 391 (438)
T ss_dssp HHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHH------SCHHHHHHHHHHHHHHHHHHHGGGTSSSSC
T ss_pred hceEEEEeCcEEEEeCCHHHccCCCCcCCccccccccccc------CCHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999877 899999999999999999999999999765
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=2.9e-60 Score=486.95 Aligned_cols=268 Identities=27% Similarity=0.433 Sum_probs=253.0
Q ss_pred ccccccCCCC-cccccCCCCccccccceeccccccccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHH
Q 011655 173 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMA 251 (480)
Q Consensus 173 ~~wpvr~~~p-~~~R~~~~epl~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~ 251 (480)
++||++.++| +++|..+++++.||+++||.++|+++||+++|+|++|+|||||+.+|+++.+++..++.++|++++|++
T Consensus 34 ~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~ 113 (347)
T 2obl_A 34 FERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN 113 (347)
T ss_dssp EEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH
T ss_pred CcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH
Confidence 3578877775 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhh
Q 011655 252 EVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGR 331 (480)
Q Consensus 252 e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~ 331 (480)
+++.. .+.+.+++++++++++++|+.+|+.+++.++++||||+++|+||++++|+++||++|+|+++++
T Consensus 114 ~~i~~-----------~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la 182 (347)
T 2obl_A 114 EFLAL-----------LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA 182 (347)
T ss_dssp HHHTT-----------SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHh-----------hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH
Confidence 98853 1234678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCccceeEEEEEecCCCCCCChhhhhhhceecEEEEecHHhhhcCC
Q 011655 332 LAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKH 411 (480)
Q Consensus 332 ~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~dg~i~Lsr~La~~g~ 411 (480)
+++||.+.|||+++++.+.+|+||+++. ++||||+++||+++++|+++|++|++..+.||+|+||+.+++.++
T Consensus 183 l~~p~~t~Gldp~~~~~l~~ller~~~~-------~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 183 SGEPDVRGGFPPSVFSSLPKLLERAGPA-------PKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp TTCCCCBTTBCHHHHHHHHHHHTTCEEC-------SSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred cCCCCcccCCCHHHHHHHHHHHHHHhCC-------CCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 9999999999999999999999999862 359999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccchhhhhhhhccCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 011655 412 FPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 464 (480)
Q Consensus 412 yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 464 (480)
|||||++.|+||+++.+ ++++|++++.++|++|++|+++++++++|.
T Consensus 256 ~Paid~~~S~sr~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (347)
T 2obl_A 256 FPAIDIGLSASRVMHNV------VTSEHLRAAAECKKLIATYKNPELLIRIGE 302 (347)
T ss_dssp SSCBCGGGCEETTHHHH------SCHHHHHHHHHHHHHHHHCCCTHHHHTTTC
T ss_pred CCCcCcccccccccccc------CCHHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 99999999999999998 899999999999999999999999999765
No 19
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.76 E-value=3e-05 Score=71.44 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=47.8
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCC--chhHHHHHHH
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE--RGNEMAEVLM 255 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGe--r~~Ev~e~~~ 255 (480)
+.||+..+|-++. +-+|+-++|.|++|+|||||+.+++. ....-++|...-+ ..+.+.+..+
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~ 67 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAE 67 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHH
Confidence 5699999999985 99999999999999999999999987 3333455555444 4555555443
No 20
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.63 E-value=8.3e-05 Score=69.57 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=53.1
Q ss_pred Cccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC---CCCEEEEEeeCCchhHHHHHHHh
Q 011655 191 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 191 epl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~---~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+-+.||+..+|-++. +-+|+-+.|.|+||+|||+++.+++.+. ....++|.-..+..+++.+-+..
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 337899999999997 8899999999999999999999976442 23357788888888887765543
No 21
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=7.4e-05 Score=69.17 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=37.7
Q ss_pred Cccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 191 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 191 epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.||+..+|.++ -+-+|+.++|.|++|+|||||+.+|+..
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999877 6889999999999999999999999863
No 22
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=0.00016 Score=67.53 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=38.1
Q ss_pred Cccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 191 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 191 epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.||+..+|-++ -+-+|+-++|.|++|+|||||+.+|+.+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999998 5889999999999999999999999874
No 23
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.40 E-value=0.00026 Score=71.61 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=73.4
Q ss_pred CCCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--------CCCEEEEEeeCC--chhHHHHHHHh
Q 011655 189 ADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMD 256 (480)
Q Consensus 189 ~~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~dv~V~~~iGe--r~~Ev~e~~~~ 256 (480)
..+.+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+. ...-++|.-.-. +.+.+.+..+.
T Consensus 100 ~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp GCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred ccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999998 57899999999999999999999988752 123456655444 25566666554
Q ss_pred ccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHH-HHHHHHHHC-CCceeeecccchHHHHH
Q 011655 257 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI-TIAEYFRDM-GYNVSMMADSTSRWAEA 324 (480)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~-tiAEyfrd~-G~dVlll~Dsltr~a~A 324 (480)
+ . + .....+++- .+....+-.-.. ..+ .+.+.++.. +.--+|++||++.+..+
T Consensus 180 ~---g--~---~~~~~l~~l-~~~~~~~~e~~~------~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 180 F---N--V---DHDAVLDNV-LYARAYTSEHQM------ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp T---T--C---CHHHHHHTE-EEEECCSTTHHH------HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred c---C--C---CHHHHHhce-eEeecCCHHHHH------HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 2 1 1 111223443 333322211111 112 222333442 45558899999987754
No 24
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00026 Score=70.87 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=74.5
Q ss_pred CCCCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--C------CCEEEEEeeCCc--hhHHHHHHH
Q 011655 188 AADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGER--GNEMAEVLM 255 (480)
Q Consensus 188 ~~~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~------~dv~V~~~iGer--~~Ev~e~~~ 255 (480)
.....+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+. . ..-++|.-.-+. .+.+.+..+
T Consensus 84 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp CSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred ccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34566899999999998 57899999999999999999999988653 1 234566544442 566766665
Q ss_pred hccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeecccchHHHHH
Q 011655 256 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEA 324 (480)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~Dsltr~a~A 324 (480)
.+ . + .....+++ +.+....+ ..+.. ..+..++.+..+ +.--+|++|+++.+..+
T Consensus 164 ~~---g--~---~~~~~~~~-l~~~~~~~--~~~~~----~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 164 AL---G--L---DIDNVMNN-IYYIRAIN--TDHQI----AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HT---T--C---CHHHHHHT-EEEEECCS--HHHHH----HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred Hh---C--C---CHHHHhcc-EEEEeCCC--HHHHH----HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 42 1 1 11112233 33333222 11111 122333333333 55668899999977654
No 25
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.30 E-value=0.00014 Score=68.15 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=47.9
Q ss_pred Cccccccceecccc--ccccccccccCCCCCCCchHHHHHHhh--c-CCCCEEEEEeeCCchhHHHHHHH
Q 011655 191 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK--Y-SNSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 191 epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~--~-~~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
+.+.||+..+|.++ -+-+|+-++|.|++|+|||||+.+|+. . ....-++|..-.+...++.+...
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 44779999999988 699999999999999999999999873 2 22223455555555555555443
No 26
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.20 E-value=0.00021 Score=72.66 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=67.5
Q ss_pred ccccccceeccccc------cccccccccCCCCCCCchHHHHHHhhcC--C--CCEEEEEeeCCchhHHHHHHHhccccc
Q 011655 192 PLLTGQRVLDALFP------SVLGGTCAIPGAFGCGKTVISQALSKYS--N--SDTVVYVGCGERGNEMAEVLMDFPQLT 261 (480)
Q Consensus 192 pl~TGIraID~l~P------igkGqr~~I~g~~g~GKT~L~~~ia~~~--~--~dv~V~~~iGer~~Ev~e~~~~~~~~~ 261 (480)
.+.||+..+|.++. +.+| .+.|+|+||+|||+|+.+++.+. . ...++|+-.-+..+.. ..+.
T Consensus 6 risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~~----- 77 (333)
T 3io5_A 6 VVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLRS----- 77 (333)
T ss_dssp CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHHH-----
T ss_pred EecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHHH-----
Confidence 46799999999998 7899 99999999999999999876542 1 4567776554444332 2332
Q ss_pred cCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHH--HHCCCceeeecccchHHH
Q 011655 262 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF--RDMGYNVSMMADSTSRWA 322 (480)
Q Consensus 262 ~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyf--rd~G~dVlll~Dsltr~a 322 (480)
+ +- ..++. +++...+ .++. ++.+++.+ ...+.--+|++||++-+.
T Consensus 78 --l----Gv-d~d~l-lv~~~~~---~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 78 --M----GV-DPERV-IHTPVQS---LEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --T----TC-CGGGE-EEEECSB---HHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --h----CC-CHHHe-EEEcCCC---HHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 1 11 12343 3333221 1111 24445555 345777899999998543
No 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.19 E-value=0.00017 Score=66.40 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=48.8
Q ss_pred ccccccceeccccc--cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHH
Q 011655 192 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 192 pl~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
.+.||++.+|-++. +-+|+-++|.|++|+|||||+.+|+... ...-++|........++.+.+.
T Consensus 4 ~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 71 (235)
T 2w0m_A 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAK 71 (235)
T ss_dssp EECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHH
T ss_pred cccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHH
Confidence 46799999999985 8899999999999999999999988542 1223555555566666655544
No 28
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.17 E-value=0.0003 Score=69.88 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC-------------C-C----CEEEEEeeCCc--
Q 011655 189 ADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-------------N-S----DTVVYVGCGER-- 246 (480)
Q Consensus 189 ~~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~-------------~-~----dv~V~~~iGer-- 246 (480)
....+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+. . . .-++|.-.-+.
T Consensus 76 ~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~ 155 (322)
T 2i1q_A 76 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR 155 (322)
T ss_dssp TCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred cCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC
Confidence 3456889999999998 57789999999999999999999987642 1 1 34566555443
Q ss_pred hhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCceeeecccchHHHHH
Q 011655 247 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEA 324 (480)
Q Consensus 247 ~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-G~dVlll~Dsltr~a~A 324 (480)
.+.+.+..+.+ . + ..+..+++ +.+....+ ..+. ...+...+.+..+ +.--+|++||++.+..+
T Consensus 156 ~~~l~~~~~~~---g--~---~~~~~~~~-l~~~~~~~--~~~~----~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 156 PERIMQMAEHA---G--I---DGQTVLDN-TFVARAYN--SDMQ----MLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHH---T--C---CHHHHHHT-EEEEECSS--HHHH----HHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHc---C--C---CHHHHhcC-EEEEeCCC--HHHH----HHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 56677666542 1 1 11112234 23333222 1111 1122233333333 55568899999987654
No 29
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.12 E-value=0.00052 Score=69.75 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--C------CCEEEEEeeCCc---hhHHHHHHH
Q 011655 189 ADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGER---GNEMAEVLM 255 (480)
Q Consensus 189 ~~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~------~dv~V~~~iGer---~~Ev~e~~~ 255 (480)
..+.+.||+..+|.++ -+-+|+-..|+|++|+|||||+.+++... . ..-+||+- ++. .+.+..+.+
T Consensus 109 ~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~~~i~~i~q 187 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIAQ 187 (349)
T ss_dssp TCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCHHHHHHHHH
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCHHHHHHHHH
Confidence 3456889999999985 57799999999999999999999988664 2 13445543 333 355655554
Q ss_pred hccccccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCceeeecccchHHHHH
Q 011655 256 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-----GYNVSMMADSTSRWAEA 324 (480)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~-----G~dVlll~Dsltr~a~A 324 (480)
.+ .+ ....++++..+. ...+ +.... ..+..+..+..+ ..-=+|++|++|..-++
T Consensus 188 ~~-----~~---~~~~v~~ni~~~-~~~~--~~~~~----~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 188 NR-----GL---DPDEVLKHIYVA-RAFN--SNHQM----LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TT-----TC---CHHHHGGGEEEE-ECCS--HHHHH----HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred Hc-----CC---CHHHHhhCEEEE-ecCC--hHHHH----HHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 31 11 112344554443 2221 12111 223344444433 55668899999855443
No 30
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.11 E-value=0.00039 Score=70.81 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred Cccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 011655 191 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 265 (480)
Q Consensus 191 epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~ 265 (480)
+.+.||+..+|.++. +-+|.-+.|.|++|+|||||+.+++.+. ....++|.-..+..+.. ..+. +
T Consensus 40 ~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~-------l- 109 (349)
T 2zr9_A 40 SVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKK-------L- 109 (349)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHH-------T-
T ss_pred CccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHH-------c-
Confidence 458899999999987 5599999999999999999999887542 23345665554433332 1222 1
Q ss_pred CCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHH
Q 011655 266 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 322 (480)
Q Consensus 266 ~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a 322 (480)
+- ..++.. +.... + .+ ..+.+++.+..++.--+|++|+++.+.
T Consensus 110 ---G~-~~~~l~-i~~~~--~-~e------~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 110 ---GV-DTDSLL-VSQPD--T-GE------QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp ---TC-CGGGCE-EECCS--S-HH------HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred ---CC-CHHHeE-EecCC--C-HH------HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 00 122322 32221 1 22 234566766655556688999998553
No 31
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.02 E-value=0.0013 Score=68.37 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=38.7
Q ss_pred CCCCccccccceecccc--ccccccccccCCCCCCCchHHHHHHhh
Q 011655 188 AADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 188 ~~~epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.....+.||+..+|.++ -+-+|+-+.|+|++|+|||||+.+++-
T Consensus 155 ~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 155 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp HTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 34566899999999998 688999999999999999999998763
No 32
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.96 E-value=0.00054 Score=70.27 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=42.6
Q ss_pred Cccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEee
Q 011655 191 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGC 243 (480)
Q Consensus 191 epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~i 243 (480)
+.+.||+..+|.++. +.+|.-+.|+|++|+|||||+.+++.+. ....++|+..
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457899999999988 7799999999999999999999987652 2233555533
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.84 E-value=0.00065 Score=71.41 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=36.8
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHH
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
++...+.|+|++|+|||+|+..|++..+....-+.+.+....++.+.++
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHH
Confidence 3334589999999999999999999887766555566666666666554
No 34
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.00062 Score=63.52 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=48.7
Q ss_pred ccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHH
Q 011655 192 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLM 255 (480)
Q Consensus 192 pl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~ 255 (480)
.+.||++.+|-++ -+-+|+-++|.|++|+|||+|+.+++.+. ...-++|...-+...++.+...
T Consensus 4 ~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHH
T ss_pred cccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHH
Confidence 4679999999986 47799999999999999999998876542 2234666666666666666554
No 35
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.77 E-value=0.0012 Score=67.49 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeC
Q 011655 190 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCG 244 (480)
Q Consensus 190 ~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iG 244 (480)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+. ...-++|+-.-
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3457899999999987 7799999999999999999999987642 22235555443
No 36
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.00096 Score=67.84 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCCccccccceecccc-ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 189 ADTPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 189 ~~epl~TGIraID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+...+.||+..+|-++ -+-+|.-+.|.|+||+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445779999999987 3337777899999999999999999875
No 37
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.71 E-value=0.0013 Score=67.58 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 011655 190 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 264 (480)
Q Consensus 190 ~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l 264 (480)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+. ....++|+-.-....... .+. +. +
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~---~g--~ 124 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARA---LG--V 124 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHH---TT--C
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHH---cC--C
Confidence 3458899999999987 6699999999999999999999987652 223456665554444431 222 00 1
Q ss_pred CCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHH
Q 011655 265 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 321 (480)
Q Consensus 265 ~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~ 321 (480)
. .++- ++..+ + . .+ ..+.+++.+..++.--+|++|+++.+
T Consensus 125 ------d-~~~l-~i~~~-~-~-~e------~~l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 125 ------N-TDEL-LVSQP-D-N-GE------QALEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp ------C-GGGC-EEECC-S-S-HH------HHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred ------C-HHHc-eeecC-C-c-HH------HHHHHHHHHHhcCCCCEEEEeChHHh
Confidence 0 1222 23222 2 1 12 23455666665555567899999843
No 38
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0048 Score=61.42 Aligned_cols=62 Identities=21% Similarity=0.092 Sum_probs=47.3
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||++.+|-++- +-+|+-+.|.|+||+|||+|+.+++.+. ...-++|...-+..+++.+
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 113 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHH
Confidence 457899999998874 7799999999999999999999987552 2234555555566666554
No 39
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.21 E-value=0.0084 Score=73.35 Aligned_cols=115 Identities=13% Similarity=0.166 Sum_probs=75.8
Q ss_pred ccCCCCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHhcccc
Q 011655 186 KLAADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDFPQL 260 (480)
Q Consensus 186 R~~~~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~~~~~ 260 (480)
+.+..+.+.||+..+|-++. +-+|.-..|.|+||+|||+|+.+++.+ ....-++|+-.-+..++.. .+.+
T Consensus 8 ~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~l--- 82 (2050)
T 3cmu_A 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL--- 82 (2050)
T ss_dssp ----CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHT---
T ss_pred hccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhh---
Confidence 33445668899999999874 779999999999999999999998654 2334588888887777765 3331
Q ss_pred ccCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHH
Q 011655 261 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 324 (480)
Q Consensus 261 ~~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A 324 (480)
. - .+++.. +... + ..+ ..+.+.+++.+.+.--+|++||++-+...
T Consensus 83 G--------~-dl~~i~-v~~p-~--~~e------~ll~il~~L~~~~~~~lVVIDSISaL~~~ 127 (2050)
T 3cmu_A 83 G--------V-DIDNLL-CSQP-D--TGE------QALEICDALARSGAVDVIVVDSVAALTPK 127 (2050)
T ss_dssp T--------C-CTTTCE-EECC-S--SHH------HHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred c--------c-Ccccce-ecCC-C--cHH------HHHHHHHHHHhccCCcEEEEcChHHhhhh
Confidence 1 1 123322 3322 1 122 23456666766667778999999865544
No 40
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.03 E-value=0.0027 Score=57.26 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=26.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
|+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 56788999999999999999999999998643
No 41
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.88 E-value=0.0077 Score=72.71 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=74.2
Q ss_pred cCCCCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccc
Q 011655 187 LAADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLT 261 (480)
Q Consensus 187 ~~~~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~ 261 (480)
....+.+.||+..+|-++. +-+|+-+.|+|+||+|||+|+.+++.+. ...-++|+-..+...+.. .+.+ .
T Consensus 9 ~~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~l---g 83 (1706)
T 3cmw_A 9 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---G 83 (1706)
T ss_dssp ---CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHT---T
T ss_pred cccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhh---c
Confidence 3445668899999999975 8899999999999999999999987542 334578888877766664 2321 1
Q ss_pred cCCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHH
Q 011655 262 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 324 (480)
Q Consensus 262 ~~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A 324 (480)
+ .+++.. +... + ..+ ....+.+.+...++.-+|++||++-+...
T Consensus 84 --~-------dl~~i~-i~~p-~--t~e------~l~~ll~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 84 --V-------DIDNLL-CSQP-D--TGE------QALEICDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp --C-------CGGGCE-EECC-S--SHH------HHHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred --c-------Ccccee-eecc-C--cHH------HHHHHHHHHHhccCCCEEEEcchhhhccc
Confidence 0 122322 2222 1 122 22344556655566778999999866543
No 42
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.85 E-value=0.0025 Score=62.16 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=35.9
Q ss_pred cccc-ccceecccc-ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 192 PLLT-GQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 192 pl~T-GIraID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+.| |+.++|-++ .+-+|+-++|.|++|+|||||+.+|+..
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3668 999998765 6889999999999999999999998765
No 43
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.68 E-value=0.0064 Score=59.77 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.6
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
+++.||||+|||+|+..||+..+..++
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 567799999999999999998765433
No 44
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.60 E-value=0.052 Score=53.18 Aligned_cols=64 Identities=9% Similarity=-0.134 Sum_probs=52.9
Q ss_pred cccccceeccccc--cccccccccCCCCCCCchHHHHHHhhc--CCCCEEEEEeeCCchhHHHHHHHh
Q 011655 193 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMD 256 (480)
Q Consensus 193 l~TGIraID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~--~~~dv~V~~~iGer~~Ev~e~~~~ 256 (480)
+.|||..+|-++- +-+|.-.+|.|+||+|||+|+.+++.+ .+.+-++|....|...++.+-.+.
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~ 70 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSR 70 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHH
Confidence 5699999999875 448888999999999999998887554 346679999999999998876655
No 45
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.58 E-value=0.017 Score=60.54 Aligned_cols=62 Identities=21% Similarity=0.092 Sum_probs=47.4
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++. +-+|+-+.|.|+||+|||+++.+++.+. ...-++|.-.-+..+++..
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~ 242 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 242 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHH
Confidence 457899999998874 7799999999999999999999987653 2234555555555555554
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.55 E-value=0.045 Score=52.34 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+..++|.|++|+|||+|+..+++..+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45569999999999999999999887654
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.51 E-value=0.037 Score=54.57 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
..+..+.|.|++|+|||+|+..+++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999988764
No 48
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.43 E-value=0.041 Score=58.47 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=44.3
Q ss_pred Cccccccceecccc--ccccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e 252 (480)
+-+.||+.-+|.++ .+-+|..++|.|++|+|||||+.+++... ...-++|..-.+....+.+
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~ 326 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR 326 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHH
Confidence 34678988888664 78899999999999999999999987542 2223455444455444443
No 49
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.42 E-value=0.031 Score=58.09 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=44.8
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC--CCC-EEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSD-TVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~d-v~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++. +-+|+-+.|.|+||+|||+++.+++.+. ..+ -++|.-.-+..+++.+
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~ 246 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTL 246 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 447899999999873 6699999999999999999999987653 112 3455444455555443
No 50
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.41 E-value=0.017 Score=70.67 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCc-hhHHHHHHHhcccccc
Q 011655 189 ADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGER-GNEMAEVLMDFPQLTM 262 (480)
Q Consensus 189 ~~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer-~~Ev~e~~~~~~~~~~ 262 (480)
..+.+.||+..+|.++. +-+|.-+.|+||+|+|||+|+.+++..+ ....++|.-.-+. ..+. .+. +-.
T Consensus 1404 ~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~---~G~ 1477 (2050)
T 3cmu_A 1404 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARK---LGV 1477 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHH---TTC
T ss_pred ccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHH---cCC
Confidence 35668999999999999 7799999999999999999999886542 3334555554443 3333 222 111
Q ss_pred CCCCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHH
Q 011655 263 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 322 (480)
Q Consensus 263 ~l~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a 322 (480)
++ ++ +.+...+ |. + .++.+++.+.++++--+|++|+++-|.
T Consensus 1478 dl---------~~--l~v~~~~-~~-E------~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1478 DI---------DN--LLCSQPD-TG-E------QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp CT---------TT--CEEECCS-SH-H------HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred Cc---------hh--ceeecCC-hH-H------HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 11 12 2223333 22 2 455667777666677788999997444
No 51
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.40 E-value=0.0029 Score=61.36 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=37.3
Q ss_pred CCCCccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhc
Q 011655 188 AADTPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 188 ~~~epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
...+.+.||+..+|.++. +-+|+-++|.|++|+|||||+.+|+..
T Consensus 8 ~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 8 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345558899999998764 458999999999999999999988753
No 52
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.034 Score=57.97 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.3
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
++++||||||||.|+..+|+..+..+
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 88999999999999999999876653
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.34 E-value=0.02 Score=56.84 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.-+.|.|++|+|||+|+..+++....+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4679999999999999999999876554
No 54
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.26 E-value=0.0058 Score=56.10 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=24.4
Q ss_pred cccccceeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 193 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 193 l~TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.++--..+.+++..+|..++|.|++|+|||||+..|++..
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44555667777788899999999999999999999998765
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.16 E-value=0.0078 Score=54.02 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.+|+.++|+|++|+|||||+..|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999988753
No 56
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.16 E-value=0.0067 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+|+.++|.||+|+|||||+..|+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999998764
No 57
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.15 E-value=0.014 Score=70.46 Aligned_cols=109 Identities=15% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCccccccceeccccc---cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 011655 190 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 264 (480)
Q Consensus 190 ~epl~TGIraID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l 264 (480)
.+.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+.+++.+. ....++|.-.-+..+.+. .+. +. +
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~--a~~---lG--v 433 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARK---LG--V 433 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHH---TT--C
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH--HHH---cC--C
Confidence 3458999999999987 7799999999999999999999987652 334567766666555542 222 11 1
Q ss_pred CCCCccCCcccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHH
Q 011655 265 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 322 (480)
Q Consensus 265 ~~~~~~~~~~rtvvv~~t~d~p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a 322 (480)
+ .++-. +.. .+ + .++ .+.+++.+..++.--+|++||++-+.
T Consensus 434 ------d-~~~L~-i~~-~~-~-~e~------~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 434 ------D-IDNLL-CSQ-PD-T-GEQ------ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ------C-GGGCE-EEC-CS-S-HHH------HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ------C-HHHeE-EcC-CC-C-HHH------HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 1 22322 222 22 2 222 33455655555555578999998543
No 58
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.09 E-value=0.0069 Score=55.99 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=24.4
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++-+|+.++|+|++|+|||||+..|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999999998764
No 59
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.03 E-value=0.0074 Score=56.67 Aligned_cols=30 Identities=20% Similarity=-0.015 Sum_probs=24.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+-+|+.++|+||+|+|||||+..|+...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567789999999999999999999998765
No 60
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.03 E-value=0.025 Score=59.59 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=47.0
Q ss_pred Ccccc-ccceeccccc-cccccccccCCCCCCCchHHHHHHhhcCC---CCEEEEEeeCCchhHHHH
Q 011655 191 TPLLT-GQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~T-GIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~~---~dv~V~~~iGer~~Ev~e 252 (480)
.-+.| |+..+|-++- +-+|.=+.|.|+||+|||+|+.+++.+.. ..-++|.-.-+..+++.+
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 288 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 34779 9999999874 66899999999999999999999886532 223566666666666554
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.00 E-value=0.12 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.-++|+||+|+|||+|+..+++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458999999999999999999876
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.072 Score=55.79 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.8
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
+++.||||||||.|+..||+..+..++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~ 235 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFI 235 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 899999999999999999998766543
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.80 E-value=0.059 Score=51.52 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=24.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
....+.|.|++|+|||+|+..|++..+..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~ 92 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPF 92 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345689999999999999999998765543
No 64
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.066 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.4
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
++++||||||||.|+..||+..+..+
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCCE
Confidence 89999999999999999999876653
No 65
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.79 E-value=0.03 Score=54.96 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.4
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
..+..++|.|++|+|||+|+..|++..+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 346679999999999999999999987553
No 66
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.24 Score=46.47 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|.-+|..+.|.||+|+|||||+..|++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34458999999999999999999998754
No 67
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.70 E-value=0.011 Score=56.45 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=30.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....++
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34688999999999999999999999998876554
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.074 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.4
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
++++||||||||.|+..||+..+..+
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 88999999999999999999877654
No 69
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.067 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.3
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
+++.||||||||.|+..||+..+..+
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 88999999999999999999876643
No 70
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.61 E-value=0.012 Score=53.45 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.+|..++|.|++|+|||||+..|+...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999998865
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.051 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
++++||||||||.|+..||+..+..++
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 889999999999999999998766543
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.58 E-value=0.041 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.8
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+++.+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999988754
No 73
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.57 E-value=0.011 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998865
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.55 E-value=0.11 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.7
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.-+.|.|++|+|||+++..|++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45668999999999999999998864
No 75
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.45 E-value=0.012 Score=53.10 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999999998754
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.42 E-value=0.06 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.7
Q ss_pred ccccccc--CCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAI--PGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I--~g~~g~GKT~L~~~ia~~~ 233 (480)
.++.+.| .|++|+|||+|+..+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4566778 9999999999999988653
No 77
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.39 E-value=0.014 Score=56.27 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.....+
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34678899999999999999999999998875544
No 78
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.37 E-value=0.012 Score=55.71 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.-...+
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34678899999999999999999999998765544
No 79
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.35 E-value=0.013 Score=56.22 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678899999999999999999999998764
No 80
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.32 E-value=0.15 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
..++|+|++|+|||+|+..|++..+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 348999999999999999999886554
No 81
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.32 E-value=0.012 Score=59.04 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|.-+.+-+|++++|+|++|+|||||+..|++...+
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 34578899999999999999999999999876533
No 82
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.30 E-value=0.016 Score=56.14 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.-..++
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34678899999999999999999999998865544
No 83
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.27 E-value=0.016 Score=55.20 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3467889999999999999999999999876544
No 84
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.26 E-value=0.015 Score=56.77 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=30.2
Q ss_pred eecc-ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 199 VLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 199 aID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++- =+.+.+|+.++|.|++|+|||||+..|+.-..
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4433 36789999999999999999999999987643
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.26 E-value=0.31 Score=45.94 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
++|.|++|+|||+|+..|++..+..
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCC
Confidence 8999999999999999999876544
No 86
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.26 E-value=0.016 Score=54.90 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+-+|+.++|.|++|+|||||+..|+.....+
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3578899999999999999999999998865544
No 87
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.26 E-value=0.016 Score=56.33 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|+|++|+|||||+..|+.-..++
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34678899999999999999999999998875544
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.22 E-value=0.019 Score=55.95 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=25.3
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+.+| ++|.||+|+|||+|+..|++..+..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 44566 9999999999999999999876554
No 89
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.22 E-value=0.029 Score=58.59 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=46.1
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC---CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~---~~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+|+.+. ...-++|...-+..+++.+
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 458899999999873 7799999999999999999999987653 1223455544455555444
No 90
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.20 E-value=0.014 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|+.++|.||+|+|||||+..|++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999998764
No 91
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.18 E-value=0.2 Score=49.42 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCC--C-EEEEEeeCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNS--D-TVVYVGCGE 245 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~--d-v~V~~~iGe 245 (480)
.+.|.|++|+|||+|+..+++.... + .++++-|..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 6999999999999999999876533 2 355655443
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.16 E-value=0.017 Score=56.91 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|.|++|+|||||+..|+.-...+
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 34688999999999999999999999998765554
No 93
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.15 E-value=0.018 Score=52.68 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=24.6
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+.+|..+.|.|++|+||||++..|++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999999997653
No 94
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.15 E-value=0.018 Score=56.05 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=29.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+.+|+.++|.|++|+|||||+..|+.-..++
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3678899999999999999999999998875544
No 95
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.14 E-value=0.018 Score=56.30 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|+|++|+|||||+..|+.-..++
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 34678899999999999999999999998876554
No 96
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.13 E-value=0.017 Score=55.28 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+-+|+.++|.|++|+|||||+..|+.-..++
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3678899999999999999999999998865544
No 97
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.11 E-value=0.017 Score=56.83 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|+|++|+|||||+..|+.....+
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44678899999999999999999999998865544
No 98
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.11 E-value=0.017 Score=55.39 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 335788999999999999999999999987643
No 99
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.10 E-value=0.016 Score=56.85 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=41.1
Q ss_pred ccccCCC-CCCCchHHHHHHhhcCCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCCCH
Q 011655 211 TCAIPGA-FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 287 (480)
Q Consensus 211 r~~I~g~-~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~p~ 287 (480)
.+.+++| +|+|||+++..+++..+.+++-+-+-..+...+.+.+.++.+.. ++ .-++.+++.--.+.-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~-~~-------~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAA-SF-------DGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBC-CC-------SSCEEEEEEESCCCGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhc-cc-------CCCCeEEEEECCcccC
Confidence 4545555 99999999999999876655444444444555555554421110 00 1146677777776654
No 100
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.09 E-value=0.018 Score=56.27 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|+.++|.|++|+|||||+..|+.....+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34678999999999999999999999998876544
No 101
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.03 E-value=0.014 Score=54.60 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred cccceeccccccccccccccCCCCCCCchHHHHHHh-hc
Q 011655 195 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALS-KY 232 (480)
Q Consensus 195 TGIraID~l~PigkGqr~~I~g~~g~GKT~L~~~ia-~~ 232 (480)
|+..-++ +.+-+|+.++|.||+|+|||||+..|+ ..
T Consensus 15 ~~~~~~s--l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGS--MLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCC--cccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3334444 346789999999999999999999999 64
No 102
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.00 E-value=0.026 Score=53.37 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+.+| ++|+|++|+|||+|+..|++.....
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34566 9999999999999999999876544
No 103
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.99 E-value=0.018 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|..++|.||+|+|||||+..|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68889999999999999999998754
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.99 E-value=0.015 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=23.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|+.++|+|++|+|||+|+..|++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999998875
No 105
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.97 E-value=0.21 Score=50.66 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+..++|.|++|+|||+|+..|++..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4679999999999999999999886553
No 106
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.94 E-value=0.02 Score=55.53 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
=+.+.+|+.++|.|++|+|||||+..|+.-..+
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 367889999999999999999999999876544
No 107
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.91 E-value=0.018 Score=56.16 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999885
No 108
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.90 E-value=0.018 Score=55.56 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999999999884
No 109
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.89 E-value=0.021 Score=55.55 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+.+|+.++|.|++|+|||||+..|+.-...+
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4678999999999999999999999998765443
No 110
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.89 E-value=0.018 Score=56.02 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 336788999999999999999999999987643
No 111
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.89 E-value=0.018 Score=55.77 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=29.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+.+|+.++|.|++|+|||||+..|+....+
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4467889999999999999999999999876544
No 112
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.86 E-value=0.016 Score=52.16 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHh
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
+.+.+|+.++|.|++|+|||||+..+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 467899999999999999999999543
No 113
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.82 E-value=0.019 Score=54.52 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|..++|.|++|+|||||+..|+..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999874
No 114
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.76 E-value=0.02 Score=58.66 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=31.6
Q ss_pred cee-ccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 198 RVL-DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 198 raI-D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.++ |.=+.+.+|+.++|+||+|+|||||+.+|+.-...
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 344 45568999999999999999999999999876544
No 115
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.034 Score=55.37 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=34.0
Q ss_pred cccccCCCCCCCchHHHHHHhhc------CCCCEEEEEeeC-Cc-hhHHHHHHHh
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY------SNSDTVVYVGCG-ER-GNEMAEVLMD 256 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~------~~~dv~V~~~iG-er-~~Ev~e~~~~ 256 (480)
.-.++.|++|+|||+++..+++. .+.|+..+-+-| ++ -.+++++++.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~ 73 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDF 73 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHH
Confidence 35788999999999999999885 256776665544 23 3457776665
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.58 E-value=0.03 Score=55.05 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.-+.|.|++|+|||+|+..|++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 46679999999999999999998764
No 117
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.54 E-value=0.026 Score=57.70 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=30.7
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 455678999999999999999999999998765443
No 118
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.54 E-value=0.027 Score=58.21 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.7
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 344788999999999999999999999999765544
No 119
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.54 E-value=0.012 Score=53.42 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=29.5
Q ss_pred ceeccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 198 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 198 raID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+++- +++.+|.+++|+|++|+|||||+..|+..
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555 88999999999999999999999988754
No 120
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.53 E-value=0.027 Score=57.61 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.6
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 455678899999999999999999999998765443
No 121
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.51 E-value=0.028 Score=57.65 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 344678899999999999999999999999865544
No 122
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.42 E-value=0.029 Score=57.69 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 444678999999999999999999999998765443
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.38 E-value=0.021 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.-+|..++|.|++|+|||||+..|+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998753
No 124
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.36 E-value=0.029 Score=57.63 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 445688899999999999999999999999765544
No 125
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.35 E-value=0.039 Score=53.14 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+.+| ++|.|++|+|||+|+..|++.....
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcCCC
Confidence 44566 9999999999999999999876544
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.32 E-value=0.029 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.7
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.|..++|.|++|+|||||+..|++..+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999998654
No 127
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.31 E-value=0.02 Score=57.36 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|+|++|+|||||+..|++....+
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 34688999999999999999999999999875544
No 128
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.30 E-value=0.019 Score=61.03 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.0
Q ss_pred Cccccccceecccc--ccccccccccCCCCCCCchHHHHHH
Q 011655 191 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQAL 229 (480)
Q Consensus 191 epl~TGIraID~l~--PigkGqr~~I~g~~g~GKT~L~~~i 229 (480)
+-+.||+.++|-++ .+-+|+..+|.|++|+|||||+.++
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 34678999998754 6889999999999999999999994
No 129
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.29 E-value=0.026 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999998764
No 130
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.25 E-value=0.042 Score=55.82 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=45.5
Q ss_pred Cccccccceeccccc-cccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCchhHHHH
Q 011655 191 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 252 (480)
Q Consensus 191 epl~TGIraID~l~P-igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer~~Ev~e 252 (480)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+++.+. ...-+.|.-.-+..+++..
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 447899999998874 8899999999999999999999987652 2223444444444455433
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.23 E-value=0.03 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|.|++|+|||||+..|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 5678999999999999999998744
No 132
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.22 E-value=0.028 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.|++|+|||||+..|+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 789999999999999999998764
No 133
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.22 E-value=0.03 Score=50.62 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+..+|..++|.|++|+||||++..+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557889999999999999999999986
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.19 E-value=0.026 Score=51.69 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=27.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+...+.+|..++|.|++|+||||++..|++..
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567788999999999999999999999854
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.18 E-value=0.039 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|.|++|+|||+++..+++..
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998753
No 136
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.15 E-value=0.024 Score=55.08 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=28.5
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++-+. +-+|+.++|.|++|+|||||+..|+..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 455555 889999999999999999999998765
No 137
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.08 E-value=0.15 Score=51.18 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
...++|.|++|+|||+|+..|++..+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4458999999999999999999887553
No 138
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.02 E-value=0.024 Score=57.76 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=30.4
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC
Confidence 344678999999999999999999999998765443
No 139
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.88 E-value=0.028 Score=58.17 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+.+.+|+.++|.|++|+|||||+.+|+.-.
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3589999999999999999999999998643
No 140
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.86 E-value=0.04 Score=56.67 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=32.7
Q ss_pred cceec-cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 197 QRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 197 IraID-~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+.++| .=+.+.+|+.++|+|++|+|||||+..|+.-..++
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 34553 44789999999999999999999999998765544
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.84 E-value=0.035 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|.-++|.||+|+|||||+.+|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567899999999999999998653
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.82 E-value=0.034 Score=49.29 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.7
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-+|..++|.|++|+||||++..|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357889999999999999999998754
No 143
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.77 E-value=0.22 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
++|.|++|+|||+|+..|++..+..
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 8999999999999999999876544
No 144
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.74 E-value=0.029 Score=55.61 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 145
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.69 E-value=0.039 Score=53.83 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+.+. |+.++|.|++|+|||||+..|+... ++
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 5677 9999999999999999999998876 54
No 146
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.64 E-value=0.039 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+-+|+-++|.||+|+|||||+..|+....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999999887654
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.61 E-value=0.044 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.2
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
-+|.-++|.||+|+|||||+..|+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46888999999999999999999886543
No 148
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.61 E-value=0.024 Score=57.81 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44678899999999999999999999999765443
No 149
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.55 E-value=0.043 Score=50.38 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=25.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+|.-+.|.|++|+|||||+..|++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5788899999999999999999998765
No 150
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.52 E-value=0.039 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|.|++|+|||||+..|+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998764
No 151
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.43 E-value=0.04 Score=50.38 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+|+.+.|.|++|+|||||+..|++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998753
No 152
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.42 E-value=0.091 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.2
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++.|++|+|||+++..+++.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHH
Confidence 788999999999999999875
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.37 E-value=0.036 Score=50.72 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=27.7
Q ss_pred ceeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 198 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 198 raID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+..+..-.+++.+.|.|++|+|||+|+..+++..
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444478899999999999999999998753
No 154
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.31 E-value=0.044 Score=54.72 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=25.4
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+.+|..++|.|++|+|||||+..|+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4789999999999999999999998764
No 155
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.30 E-value=0.1 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.0
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.-+.|.|++|+|||+|+..|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998754
No 156
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.30 E-value=0.061 Score=57.71 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=30.0
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++.+..+.+|+.++|.|++|+|||||+..|+...
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555568999999999999999999999998753
No 157
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.22 E-value=0.017 Score=57.84 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=29.8
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|.|+++-+|+.++|+|++|+|||||+..|+...
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 6778899999999999999999999999987653
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.09 E-value=0.044 Score=48.86 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.3
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-+|..+.|.|++|+||||++..|++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999998754
No 159
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.09 E-value=0.039 Score=55.72 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.4
Q ss_pred cccc--ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 205 PSVL--GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 205 Pigk--Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+.+ |++++|+|++|+|||||+..|+...+.+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456 9999999999999999999999876553
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.08 E-value=0.16 Score=51.20 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.8
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
..++|.|++|+|||+|+..+++..+..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3489999999999999999999876543
No 161
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.97 E-value=0.061 Score=51.65 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.=+.+.+ +.++|.|++|+|||||+..|+.-..++
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34457888 999999999999999999999865544
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.92 E-value=0.054 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+++|.|++|+||||++..|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.071 Score=58.21 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=30.3
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++.+..+.+|+.++|.|++|+|||||+..|+...
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45666678999999999999999999999998653
No 164
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.88 E-value=0.044 Score=54.22 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.7
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
-||.|+.+-+|+..+|.|++|+|||||+..|+ ....
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 37888889999999999999999999999998 6443
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.84 E-value=0.054 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++..++|.|++|+|||||+..|++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999954
No 166
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.83 E-value=0.038 Score=54.50 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=32.5
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
-||-++.+-+|+.++|.|++|+|||||+..|+.....+
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 36778888899999999999999999999998765443
No 167
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.77 E-value=0.054 Score=54.52 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=28.8
Q ss_pred ceecc-ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 198 RVLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 198 raID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+++. -+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34443 356899999999999999999999998754
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.70 E-value=0.061 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.6
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+..+.|.|++|+|||+|+..+++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998875
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.59 E-value=0.39 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+++.||||||||+|+..+|+..+..
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999987654
No 170
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.55 E-value=0.071 Score=47.53 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-++..+.|.|++|+||||++..+++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3677899999999999999999997653
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.53 E-value=0.32 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
...++|.|++|+|||+|+..|++..+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999988754
No 172
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.52 E-value=0.1 Score=46.15 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.5
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
|.-+.|.|++|+||||++..+++..+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999876543
No 173
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.44 E-value=0.081 Score=57.67 Aligned_cols=35 Identities=31% Similarity=0.211 Sum_probs=30.4
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++.+..+.+|+.++|.|++|+|||||+..|+...
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 56666678999999999999999999999998653
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.38 E-value=0.12 Score=51.33 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCEEEE-EeeCCchhHHHHHHH
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDTVVY-VGCGERGNEMAEVLM 255 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~-~~iGer~~Ev~e~~~ 255 (480)
..++|+||+|+|||||+..|++..+..+... +-+-+++.++.++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 6789999999999999999998765543322 223345666665543
No 175
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.052 Score=57.23 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34566799999999999999999999998763
No 176
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.33 E-value=0.37 Score=51.18 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred cccccCCCCCCCchHHHHHHhh----c--CCCCEEEEEeeCCch
Q 011655 210 GTCAIPGAFGCGKTVISQALSK----Y--SNSDTVVYVGCGERG 247 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~----~--~~~dv~V~~~iGer~ 247 (480)
.-++|.|..|+|||||+..+++ . .+-|.++++-+.+..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA 196 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCC
Confidence 4588999999999999999996 2 233567777777643
No 177
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.32 E-value=0.086 Score=49.50 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=27.6
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
+.-+|.-++|.|+.|+|||||+..|+.. ...+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 4568999999999999999999999887 34443
No 178
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.14 E-value=0.058 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.9
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+..+|..++|.|++|+|||||+..|+..
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999998874
No 179
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.08 E-value=0.075 Score=47.19 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.1
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|..+.|.|++|+||||++..|++..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998853
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.99 E-value=0.075 Score=50.82 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-+|..++|.|++|+|||||+..|++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999999999999999643
No 181
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.93 E-value=0.095 Score=48.11 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++|.|++|+||||++..|++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 182
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.84 E-value=0.11 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+..++|.|++|+|||+|+..+++..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999999987654
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.84 E-value=0.095 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=23.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.-++|.|++|+|||+|+..+++..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348899999999999999999876544
No 184
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.83 E-value=0.35 Score=48.60 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++..+.|.|+||||||+++..+++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999999999988765
No 185
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.82 E-value=0.081 Score=52.56 Aligned_cols=28 Identities=25% Similarity=0.120 Sum_probs=25.7
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+.+|+.++|+|++|+||||++..|+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999998865
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.79 E-value=1.1 Score=44.66 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=30.6
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcC--CCCEEEEEeeCCc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGER 246 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~--~~dv~V~~~iGer 246 (480)
+...+|+.++|.|++|+||||++..||... ...-+.++.+.-+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 346789999999999999999999887542 2222444444443
No 187
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.75 E-value=0.59 Score=49.40 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=27.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC------CCCEEEEEeeCCc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 246 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~------~~dv~V~~~iGer 246 (480)
..+-++|.|++|+|||+|+.++++.. -.+.+.++-++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45568999999999999999987532 1234555555544
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.74 E-value=0.074 Score=48.31 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.-+|..+.|.|++|+||||++..+++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999875
No 189
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.72 E-value=0.089 Score=50.18 Aligned_cols=31 Identities=26% Similarity=0.186 Sum_probs=26.5
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+..++..+.|.|++|+||||++..|++..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5567788999999999999999999987543
No 190
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.72 E-value=0.091 Score=56.72 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.4
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|.|++|+|||||+..|+....++
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 44678899999999999999999999999876554
No 191
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.71 E-value=0.091 Score=56.56 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=29.3
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|+.++|.|++|+|||||+..|+....+
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999876443
No 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.62 E-value=0.067 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|.|++|+|.+|+|||+|+..++...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998753
No 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.57 E-value=0.079 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.|.|++|+||||++..|++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998764
No 194
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.54 E-value=0.1 Score=46.17 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=20.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
++..+.|.|.+|+||||++..|++..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 56778999999999999999999875543
No 195
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.53 E-value=0.094 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+++|.|++|+||||++..|++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987643
No 196
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.51 E-value=0.1 Score=56.51 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|.|++|+|||||+..|++..+.+
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 33678899999999999999999999998876554
No 197
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.50 E-value=0.1 Score=46.46 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+..+.|.|++|+||||++..+++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999986543
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.48 E-value=0.07 Score=46.60 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.7
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.....+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345668999999999999999988753
No 199
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.44 E-value=0.074 Score=53.99 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=28.6
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
-+.+-+|+.++|.|++|+|||||+..|++..+.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 346779999999999999999999999887544
No 200
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.36 E-value=0.095 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.8
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++|+.++|+|++|+|||||+..|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999998865
No 201
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.34 E-value=0.1 Score=45.94 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.7
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
|-++|.|++|+||||++..|++..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 67899999999999999999986443
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.34 E-value=0.44 Score=50.10 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++..+.+.|++|+||||++..||.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5678899999999999999988764
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.31 E-value=0.081 Score=48.07 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-+|-.+.|.|++|+||||++..|++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446778999999999999999999875
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.26 E-value=0.082 Score=48.50 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.6
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+..+|..++|.|++|+|||||+..|+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999998764
No 205
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.23 E-value=0.16 Score=47.05 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=29.4
Q ss_pred cccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCc-hhHHHHHHHh
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGER-GNEMAEVLMD 256 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer-~~Ev~e~~~~ 256 (480)
+.|.|++|+|||+++.+++.. + .-++|.+-++. ..|+.+-+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCCCCCHHHHHHHHH
Confidence 578999999999999999976 3 23788888775 4455444443
No 206
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.19 E-value=0.089 Score=56.65 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|.|++|+|||||+..|+....++
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 44678899999999999999999999998875544
No 207
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.14 E-value=0.13 Score=49.17 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.+..+.|.|++|+|||+|+..+++..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAP 77 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678999999999999999999876554
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.11 E-value=0.096 Score=46.70 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|..++|.|++|+||||++..+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999875
No 209
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.07 E-value=0.11 Score=55.71 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=25.7
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+|+.++|.|+.|+|||||+..|+...
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999999998754
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.91 E-value=0.066 Score=54.80 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=29.0
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++.+....+|+.++|+|++|+|||||+..|+....
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 44455567899999999999999999999986544
No 211
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.89 E-value=0.08 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccccc---ccccccCCCCCCCchHHHHHHhhcC
Q 011655 204 FPSVL---GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 204 ~Pigk---Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.+ |..+.|.|++|+||||++..|++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34555 9999999999999999999999854
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.84 E-value=0.095 Score=53.90 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+.+|+.++|.|++|+|||||+..|++....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 56788999999999999999999999976444
No 213
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.78 E-value=0.42 Score=46.77 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=32.4
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCEE-EEEeeCCchhHHHHHHH
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDTV-VYVGCGERGNEMAEVLM 255 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv~-V~~~iGer~~Ev~e~~~ 255 (480)
..++|.|++|+|||+|+..|++..+..++ +-+..-....++.+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILT 102 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHH
Confidence 35899999999999999999988665532 33333345555655554
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.78 E-value=0.11 Score=47.02 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|..+.|.|++|+||||++..|++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46678999999999999999998863
No 215
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.76 E-value=0.11 Score=55.66 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=26.3
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999998753
No 216
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.76 E-value=0.08 Score=57.01 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|.|++|+|||||+..|++...++
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 34678999999999999999999999998875554
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.76 E-value=0.12 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+|-.+.|.|++|+||||++..|++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999875
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.72 E-value=0.084 Score=53.02 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 45678999999999999999999999987544
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.65 E-value=0.15 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred cccCCCCCCCchHHHHHHhhcCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
++|.|++|+|||+|+..|++..+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 899999999999999999987544
No 220
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.65 E-value=0.11 Score=48.34 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=23.2
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.-++..+.|.|++|+||||++..|++..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999997653
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.59 E-value=0.14 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred cccccCCCCCCCchHHHHHHhhcCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
..++|.|++|+||||++..|++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998643
No 222
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.42 E-value=0.13 Score=56.04 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=26.2
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.+|+.++|.|+.|+|||||+..|+....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999999999987543
No 223
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.36 E-value=0.12 Score=46.06 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++..+.|.|++|+||||++..+++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 466788999999999999999998653
No 224
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.29 E-value=0.16 Score=49.83 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.8
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+-.+|.-+.|.|++|+||||++..+++...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445566788999999999999999987653
No 225
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.20 E-value=0.18 Score=53.73 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.5
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+-+| ++|.|++|+|||+|+..|++..+..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4456 9999999999999999999876544
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.15 E-value=0.13 Score=54.93 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=26.2
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 46789999999999999999999998865
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.10 E-value=0.13 Score=52.48 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+.+|+.++|+|++|+||||++..|+..
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35789999999999999999999998865
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.07 E-value=0.13 Score=46.02 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.1
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..-+|..+.|.|.+|+||||++..+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3346788999999999999999999875
No 229
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.07 E-value=0.14 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+...+.|.|++|+|||+|+..+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3345999999999999999998875
No 230
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.97 E-value=0.13 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|+|++|+|||||+..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.97 E-value=0.24 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.6
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
..++++||||||||.|+..||+..+..
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 348899999999999999999987664
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.96 E-value=0.13 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
.++|.|++|+||||++..|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 233
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.94 E-value=0.12 Score=46.25 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.2
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.++..+.|.|++|+||||++..+++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999997643
No 234
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.93 E-value=0.14 Score=47.21 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.4
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+|-.+.|.|++|+||||++..|++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 466789999999999999999998654
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.93 E-value=0.17 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++|.|++|+||||++..|++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.92 E-value=0.13 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+.|.|++|+|||+|+..|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988753
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.92 E-value=0.15 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++|.|++|+||||++..| +..
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 678999999999999999 443
No 238
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.85 E-value=0.13 Score=45.61 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.2
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+-.++|.|++|+||||++..+++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999987643
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.84 E-value=0.11 Score=47.12 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
+++|.|++|+||||++..|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 240
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.82 E-value=0.21 Score=53.95 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=30.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
=+.+-+|++++|.|++|+|||||+..|++..+.+
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 3688999999999999999999999998876554
No 241
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.82 E-value=0.13 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=19.3
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
.+.|.|++|+||||++..|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 367899999999999999998
No 242
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.81 E-value=0.17 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+-.+.|.|++|+||||++..|++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44689999999999999999998643
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.72 E-value=0.15 Score=53.50 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.8
Q ss_pred ccccccccc--cccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGT--CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr--~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+-+|+. ++|+|++|+|||||+..|+..
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 367889999 999999999999999998764
No 244
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.51 E-value=0.67 Score=52.69 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=27.7
Q ss_pred cccccCCCCCCCchHHHHHHhhcC------CCCEEEEEeeCCc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 246 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~------~~dv~V~~~iGer 246 (480)
..++|.|..|+|||+|+.+++++. ..+.++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 357899999999999999987652 2345667766663
No 245
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.49 E-value=0.12 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|+|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 246
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.45 E-value=0.19 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.1
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
...++|.|++|+||||++..|++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999997653
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.41 E-value=0.16 Score=45.58 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.+.|.|++|+||||++..|++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999986543
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.40 E-value=0.14 Score=44.61 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++|+|++|+|||+|+..+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 249
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.38 E-value=0.24 Score=49.54 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.6
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
+..++|.|+||||||+++..|++..+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~ 79 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 45689999999999999999999875543
No 250
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.20 E-value=0.18 Score=54.06 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=26.8
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|-..-+|+..+|+|++|+|||||+..|+...
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4445689999999999999999999998753
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.16 E-value=0.16 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++.|.|++|+||||++..|++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998643
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.02 E-value=0.27 Score=49.40 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.-.+|+.++|.|++|+||||++..|+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999998865
No 253
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.99 E-value=0.15 Score=47.15 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+|-++.|.|++|+||||++..|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566789999999999999999998653
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.91 E-value=0.17 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.9
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-+|+.++|.|++|+|||||+..|++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999999998865
No 255
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.89 E-value=0.18 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.9
Q ss_pred cccCCCCCCCchHHHHHHhhcCCC
Q 011655 212 CAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+.|.|++|+|||||+..|++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCC
Confidence 678999999999999999986543
No 256
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.88 E-value=0.44 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.291 Sum_probs=17.6
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+|.||||||||+.+.+++.+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 689999999999988876543
No 257
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.86 E-value=2.1 Score=45.67 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=32.4
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhh----cCCCCEEEEEeeCCchhH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSK----YSNSDTVVYVGCGERGNE 249 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~----~~~~dv~V~~~iGer~~E 249 (480)
.+.+.+|..++|.|.+|+|||+++..|+. ....+-+-+.++.-++.|
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e 211 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE 211 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh
Confidence 45677899999999999999999987543 223333444456555444
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.85 E-value=0.13 Score=45.98 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=23.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-++..++|.|++|+||||++..|++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566799999999999999999998643
No 259
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.81 E-value=0.26 Score=47.68 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.7
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
...+.|.|++|+|||+|+..+++..+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999999876543
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.61 E-value=0.16 Score=45.23 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|++|+|||+|+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999874
No 261
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.60 E-value=0.18 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.4
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+..+.|.|++|+|||+|+..+++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999988775
No 262
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.51 E-value=0.18 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-+.|.|++|+|||+|+..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 263
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.47 E-value=0.19 Score=53.71 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.3
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
..-.+|.-++|.||+|+|||+|+..|++..+..
T Consensus 103 ~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 103 TKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp SSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 333379999999999999999999999876443
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.45 E-value=0.19 Score=49.34 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=25.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCCE
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSDT 237 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~dv 237 (480)
.|.-+.+.|++|+|||+|+..+++..+..+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 467899999999999999999998766553
No 265
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.42 E-value=0.19 Score=59.48 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.1
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.=+.|-+||+++|+|++|+|||||+..|.+-.+
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 346889999999999999999999999988654
No 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.35 E-value=1 Score=52.58 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.7
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC----C-CCEEEEEeeCCch
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS----N-SDTVVYVGCGERG 247 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~----~-~dv~V~~~iGer~ 247 (480)
..-++|.|+.|+|||||+.++++.. + .+.++++-+++..
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~ 193 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence 3468999999999999999988532 1 1225666667654
No 267
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.30 E-value=0.18 Score=58.05 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=27.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhh
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999999984
No 268
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.27 E-value=0.2 Score=42.84 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999998865
No 269
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.27 E-value=0.2 Score=42.64 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.26 E-value=0.16 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.|.|++|+||||++..|++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998753
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.24 E-value=0.19 Score=44.61 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=23.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhh
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.-+.+.+| -.+|+|+.|+|||||+..|.-
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 34556667 789999999999999998764
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.24 E-value=0.19 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.5
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-.++..++|.|++|+|||||+..|++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457788999999999999999988763
No 273
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.13 E-value=0.2 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987653
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.10 E-value=0.23 Score=43.36 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++.|.|++|+||||++..+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998643
No 275
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.98 E-value=0.21 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++++|++|+|||+|+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999864
No 276
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.93 E-value=0.22 Score=45.80 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.+|..+.|.|++|+||||++..|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568889999999999999999998753
No 277
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.89 E-value=0.23 Score=46.58 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.5
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+|..++|.|++|+||||++..|++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999753
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.86 E-value=0.21 Score=46.87 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=23.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCG 244 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iG 244 (480)
++.|+||||+||+|++..|++..+ ++++-.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHH
Confidence 367899999999999999998542 3444444
No 279
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.86 E-value=0.2 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999998764
No 280
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.81 E-value=0.23 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.6
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+.++.|.|++|+||||++..|++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998654
No 281
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.74 E-value=0.21 Score=47.38 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++-+++|.|++|+||||++..|++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999999999998754
No 282
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.73 E-value=0.23 Score=46.94 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+.+|..+.|.|++|+||||++..|++...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466899999999999999999999988643
No 283
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.68 E-value=0.19 Score=46.35 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.1
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++..+.|.|++|+||||++..|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998643
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.66 E-value=0.18 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++|.|++|+|||||+..|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 285
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.65 E-value=0.22 Score=51.57 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=25.7
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhh
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
|-.+.+|.+++|+|++|+|||||+.+|++
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33567899999999999999999999987
No 286
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.54 E-value=0.35 Score=48.46 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
...+.|.|++|+|||+|+..|++..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999887543
No 287
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.53 E-value=0.22 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.1
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+.|.|++|+||||++..+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998643
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.51 E-value=0.22 Score=50.66 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+|+.++|.|++|+|||||+..|++.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 467779999999999999999988764
No 289
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.46 E-value=0.35 Score=54.29 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=27.1
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+..|..++|.|++|+|||+|+..|++..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 5678889999999999999999999876554
No 290
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.44 E-value=0.23 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.2
Q ss_pred ccccccCCCCCCCchHHHHHHhhcC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++.+.|.|++|+|||+|+..|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988753
No 291
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.40 E-value=0.24 Score=52.85 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=27.9
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
+.+-+|+.++|.|++|+||||++..|+.....+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 345689999999999999999999998876544
No 292
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.39 E-value=0.24 Score=42.12 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998765
No 293
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.33 E-value=0.24 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998865
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.33 E-value=0.22 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=21.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
++.|.|++|+||||++..|++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998643
No 295
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.33 E-value=0.24 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++|.|++|+||||++..+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999999999998853
No 296
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.19 E-value=0.23 Score=44.36 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
++|.|++|+||||++..|++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998763
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.17 E-value=0.25 Score=42.21 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987653
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.15 E-value=0.21 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998765
No 299
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.07 E-value=0.25 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998865
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.02 E-value=0.25 Score=42.27 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998864
No 301
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.98 E-value=0.11 Score=56.19 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=26.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+-+|+.+.|.|++|+|||||+..|++..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 56789999999999999999999998764
No 302
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.96 E-value=0.24 Score=42.54 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|++|+|||+|+..+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999998754
No 303
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.84 E-value=0.29 Score=50.92 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.5
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+..+++.||||+|||+|+..+|+..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 456999999999999999999988653
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.80 E-value=0.39 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++..+.|.|.+|+||||++..|++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556889999999999999999875
No 305
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.65 E-value=0.27 Score=41.95 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998864
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.58 E-value=0.32 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.0
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..++|.|++|+||||++..|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 45899999999999999999986
No 307
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.51 E-value=0.27 Score=42.54 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++++|++|+|||+|+..+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998765
No 308
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.50 E-value=0.6 Score=44.13 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=30.2
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCC-C-EEEEEeeCCchhH
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNS-D-TVVYVGCGERGNE 249 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~-d-v~V~~~iGer~~E 249 (480)
+.-+.|.|++|+|||+|+..|++.... + -++++-|..-..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 456899999999999999999887532 2 3566666655443
No 309
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.43 E-value=0.27 Score=42.04 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|++|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998765
No 310
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.42 E-value=0.21 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
.++|.|++|+|||||+..|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999999986
No 311
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.42 E-value=0.26 Score=47.29 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=27.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCEEEEEeeCCchhHH
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEM 250 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~iGer~~Ev 250 (480)
-.+.|.|++|+||||++..|++..+. .+.-.|.-.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~---~~~d~g~~~r~~ 47 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA---RYLDTGAMYRIA 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC---EEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC---CcccCCcHHHHH
Confidence 36899999999999999999976432 334444444443
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.42 E-value=0.34 Score=54.42 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=34.7
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCCCEEEE-------EeeCCchhHHHHHHH
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY-------VGCGERGNEMAEVLM 255 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~-------~~iGer~~Ev~e~~~ 255 (480)
+-+|..++++|+||+|||+|+..|++..+...+.+ -.+|+....+..+++
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~ 564 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHH
Confidence 34678899999999999999999998754432211 124566555655554
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.35 E-value=0.28 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999987653
No 314
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.31 E-value=0.22 Score=57.34 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=29.7
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|++++|.|++|+|||||+..|+.....
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4467899999999999999999999999876544
No 315
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.30 E-value=1.1 Score=46.85 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.5
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++..+++.|++|+||||++..||..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999988754
No 316
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.30 E-value=0.29 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+.++
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.24 E-value=0.29 Score=42.40 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++++|++|+|||+|+..+....
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999987653
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.24 E-value=0.3 Score=42.31 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.++
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.21 E-value=0.29 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.3
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=+++++|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 320
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.19 E-value=0.15 Score=49.40 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=25.6
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCEEEEEee
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 243 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~i 243 (480)
+-+.|.|++|+|||+|+.++++..... ++|+-+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEEc
Confidence 478999999999999999998875444 344443
No 321
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.12 E-value=0.34 Score=57.20 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
.=+.+-+|++++|.|++|+|||||+..|++-.+++
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34678999999999999999999999998865443
No 322
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.10 E-value=0.16 Score=44.14 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.5
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+..+.|.|++|+|||+++..|++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45689999999999999999987654
No 323
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.07 E-value=0.21 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|++|+|||+|+..+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6889999999999999998754
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.03 E-value=0.25 Score=42.26 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68899999999999999988653
No 325
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.00 E-value=0.26 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.-+++++|++|+|||+|+..+.++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999875
No 326
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.91 E-value=0.45 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
..++|+||+|+|||+|+..+++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999876
No 327
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.90 E-value=0.3 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|++|+|||+|+..+.++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68899999999999999988653
No 328
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.82 E-value=0.19 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQAL 229 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~i 229 (480)
=+.+.+|+.++|.|++|+|||||+..|
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 367889999999999999999999754
No 329
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.71 E-value=0.32 Score=41.76 Aligned_cols=24 Identities=33% Similarity=0.187 Sum_probs=21.1
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
--|++++|++|+|||+|+..+..+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998764
No 330
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.67 E-value=0.27 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+..+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 331
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.63 E-value=0.39 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.1
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.|..+.|.|++|+|||+|+.++++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46779999999999999999998864
No 332
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.60 E-value=0.24 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=23.5
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.-+++..++|.|++|+||||++..|++.
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4456666999999999999999998884
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.57 E-value=0.32 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|.+|+|||+|+..+..+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999988653
No 334
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.49 E-value=0.32 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.5
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
-|+||.|+||+||||++..|++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998854
No 335
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.47 E-value=0.32 Score=42.59 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
No 336
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.44 E-value=0.3 Score=46.93 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCC--CEEEEEeeCC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGE 245 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~--dv~V~~~iGe 245 (480)
..++|.|++|+|||+++..|++.... .-++++-|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 45899999999999999999886422 2245555543
No 337
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.42 E-value=0.33 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.|+|++|+|||+|+..+.++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887653
No 338
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.41 E-value=0.47 Score=45.84 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCEEEEEee
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 243 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~~i 243 (480)
|+-+.|.|++|+|||+|+.++++..+ ++|+-+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP---GILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS---EEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC---cEEEEe
Confidence 57789999999999999999988753 455444
No 339
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.32 E-value=0.33 Score=57.32 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=29.6
Q ss_pred cccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 202 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 202 ~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
.=+.+-+|++++|+|++|+|||||++.|.+..+.
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468899999999999999999999999876544
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.31 E-value=0.35 Score=42.08 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998764
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.28 E-value=0.33 Score=42.02 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.-+++++|++|+|||+|+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.24 E-value=0.34 Score=42.76 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|.+|+|||+|+..++.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.24 E-value=0.31 Score=43.02 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
..++|.|++|+||||++..+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998754
No 344
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.20 E-value=0.28 Score=42.38 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999998875
No 345
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.18 E-value=0.87 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.4
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+...++|.|++|+|||+|+..+++..
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999988753
No 346
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.16 E-value=0.29 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.+++|+|.+|+|||||+..|..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5668999999999999999998764
No 347
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.11 E-value=0.39 Score=52.32 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.2
Q ss_pred cccccccc-----cccccCCCCCCCchHHHHHHhhcC
Q 011655 202 ALFPSVLG-----GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 202 ~l~PigkG-----qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.-+.+.+| +.++|.|++|+|||||+..|+.-.
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 34556666 789999999999999999998753
No 348
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.07 E-value=0.35 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.++
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998765
No 349
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.02 E-value=0.35 Score=42.01 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999998865
No 350
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.98 E-value=0.34 Score=50.46 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=27.3
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHhhcC
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++.++ ..+|+-++|.|+.|+|||||+..|+...
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 444443 3688999999999999999999987653
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.96 E-value=0.3 Score=46.56 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=22.9
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|...++|.||||+|||+++..|++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344458999999999999999998864
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.88 E-value=0.35 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998875
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.87 E-value=1.3 Score=43.78 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.7
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+|..+++.|++|+||||++..|+..
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999999988754
No 354
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.86 E-value=0.36 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..+.++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998865
No 355
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.85 E-value=0.28 Score=42.74 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|++|+|||+|+..+.++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999998753
No 356
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.83 E-value=0.33 Score=47.46 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+-+.|.|++|+|||+|+..+++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 44599999999999999999998654
No 357
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.82 E-value=0.34 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.7
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|.||+|+|||||+..|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999987653
No 358
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.71 E-value=0.32 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.2
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+.-+.|.|++|+|||+|+..+++.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34556999999999999999999875
No 359
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.61 E-value=0.29 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6789999999999999998865
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.59 E-value=0.38 Score=41.75 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++++|.+|+|||+|+..+..+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999987653
No 361
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.44 E-value=0.59 Score=49.41 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSNSD 236 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~~d 236 (480)
..-++|.|++|+|||+|+..+++..+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3568999999999999999999987543
No 362
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.43 E-value=0.39 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=|++++|.+|+|||+|+..+..+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999988653
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.41 E-value=0.32 Score=41.93 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+..+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998754
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.41 E-value=0.33 Score=48.60 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.5
Q ss_pred cccccccccccCCCCCCCchHHHHHHhhc
Q 011655 204 FPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 204 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
....+|..++|.|++|+|||||+..|+..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999998753
No 365
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.36 E-value=0.31 Score=42.79 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|++|+|||+|+..+..+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999987653
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.26 E-value=0.41 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.6
Q ss_pred ccccccCCCCCCCchHHHHHHhh
Q 011655 209 GGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
+-.++|.|++|+||||++..|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999987
No 367
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.25 E-value=0.39 Score=42.35 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|++|+|||+|+..+.++
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998865
No 368
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.24 E-value=0.39 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|+||||+||+|.+..|++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999864
No 369
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.23 E-value=0.37 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.0
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++.||+|+|||+++..+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998863
No 370
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.21 E-value=0.39 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.|+|.+|+|||+|+..+.++.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 78999999999999999988653
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.21 E-value=0.33 Score=42.87 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|++|+|||+|+..+.++
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998875
No 372
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.20 E-value=0.41 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..++|.|++|+|||+++..+++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 44899999999999999998876
No 373
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.18 E-value=0.4 Score=42.45 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|++|+|||+|+..+..+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987653
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.16 E-value=0.38 Score=45.55 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++|.|++|+||||++..|++..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998753
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.12 E-value=0.4 Score=43.49 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+++++|++|+|||+|+..+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.09 E-value=0.4 Score=43.16 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.++|.|++|+||||++..+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998854
No 377
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.07 E-value=0.32 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred ccccccccccccCCCCCCCchHHH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVIS 226 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~ 226 (480)
=+.+-+|+.++|.|++|+|||||+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHh
Confidence 368899999999999999999996
No 378
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.07 E-value=0.39 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
.+.|.|++|+||||++..|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998864
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.03 E-value=0.4 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++|.|++|+||||++..+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999986
No 380
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.03 E-value=0.36 Score=52.10 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.9
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+-.|+.++|.|++|+|||||+..|++...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 355788999999999999999999988653
No 381
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.97 E-value=0.33 Score=42.93 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++++|.+|+|||+|+..+.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998865
No 382
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.79 E-value=0.41 Score=50.84 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+.+.+ +.++|.|++|+|||||+..|+.-
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 356777 99999999999999999998753
No 383
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.79 E-value=0.42 Score=42.53 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++|+|++|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998765
No 384
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.68 E-value=0.36 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+|+.++|.|++|+||||++..|+..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999998754
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.67 E-value=0.42 Score=42.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|++|+|||+|+..+....
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999987653
No 386
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=82.62 E-value=0.65 Score=48.79 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.5
Q ss_pred cccccCCCCCCCchHHHHHHhhcCCCCEE
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYSNSDTV 238 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~~~dv~ 238 (480)
..++++|+||+|||+++..||+..+...+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 45899999999999999999998765543
No 387
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=82.59 E-value=0.36 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|++|+|||+|+..+.++
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998765
No 388
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.56 E-value=0.41 Score=42.06 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.1
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.=|++++|++|+|||+|+..+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999988654
No 389
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.55 E-value=0.37 Score=42.60 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..+.++
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 390
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.40 E-value=0.44 Score=42.32 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|.+|+|||+|+..+.++.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999988753
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.40 E-value=0.44 Score=42.28 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.++
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998865
No 392
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.36 E-value=0.66 Score=43.21 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.|.-++|.|++|+|||||+.++.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999998775
No 393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.33 E-value=0.43 Score=44.51 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|.+|+|||+|+..|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999998753
No 394
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.32 E-value=0.43 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.+++|.|++|+|||||+..|+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 778999999999999999998763
No 395
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.23 E-value=0.45 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+..+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998764
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.17 E-value=0.45 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998765
No 397
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.11 E-value=0.19 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.++|.|++|+|||||+..|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988753
No 398
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.08 E-value=1.2 Score=41.77 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|--+.|-|++|+||||++..|++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5777889999999999999999875
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=82.05 E-value=0.33 Score=43.05 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-++.|+|++|+|||+|+..+..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998865
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.02 E-value=0.41 Score=41.74 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998854
No 401
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.98 E-value=0.47 Score=41.69 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998765
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.95 E-value=0.47 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.8
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=|++++|.+|+|||+|+..+..+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998865
No 403
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=81.91 E-value=0.41 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|+-..|.|++|+||||++.+++++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4677789999999999999877654
No 404
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.82 E-value=0.47 Score=42.13 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|++|+|||+|+..+.++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999988753
No 405
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.73 E-value=0.45 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-++|.|++|+|||||+..|+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 406
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.73 E-value=0.51 Score=46.98 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=24.1
Q ss_pred cccccccccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+|..++|.|++|+||||++..||..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 567889999999999999999998764
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=81.66 E-value=0.49 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.++|++|+|||+|+..+..+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 408
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.60 E-value=0.39 Score=42.65 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|.+|+|||+|+..+.++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999988754
No 409
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=81.56 E-value=0.49 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|++|+|||+|+..+..+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988653
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=81.51 E-value=0.49 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 411
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=81.40 E-value=0.51 Score=41.37 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=19.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999766654
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.34 E-value=2.1 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.7
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+|+.+++.|++|+||||++..||..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7888999999999999999998765
No 413
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.30 E-value=0.48 Score=50.42 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.4
Q ss_pred cccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 206 SVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 206 igkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
+..|..++|.|+||+|||+|+..|++....
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 345678999999999999999999987643
No 414
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=81.20 E-value=0.43 Score=42.50 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|++|+|||+|+..+..+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999987653
No 415
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=81.14 E-value=0.57 Score=48.56 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=24.2
Q ss_pred ccccccccccCCCCCCCchHHHHHHhhc
Q 011655 205 PSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 205 PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+.+|.+++|+|.+|+|||||+..|.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999865
No 416
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.13 E-value=0.49 Score=55.96 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
=+.+-+|++++|+|++|+|||||++.|.+..+.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 367889999999999999999999999887544
No 417
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.90 E-value=0.3 Score=42.65 Aligned_cols=25 Identities=32% Similarity=0.134 Sum_probs=21.4
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.=+++++|++|+|||+|+..+..+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999988753
No 418
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=80.88 E-value=0.39 Score=49.93 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.4
Q ss_pred eccccccccccccccCCCCCCCchHHHHHHhhc
Q 011655 200 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 200 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+.-+.+-.|..++|+|++|+|||||+..|+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 455567778999999999999999999999765
No 419
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.85 E-value=0.39 Score=42.26 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.83 E-value=0.34 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++++|++|+|||+|+..+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 421
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.80 E-value=0.55 Score=47.75 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNS 235 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~ 235 (480)
++.-+.|.||.|+|||+|+..||+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 3445889999999999999999997653
No 422
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.79 E-value=11 Score=47.81 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=71.9
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCCCCEEEEE-ee-CCchhHHHHHHHhccccccCCCCCCccCCcccEEEEEeCCCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV-GC-GERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 285 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~~dv~V~~-~i-Ger~~Ev~e~~~~~~~~~~~l~~~~~~~~~~rtvvv~~t~d~ 285 (480)
.|.-++++||||||||+|+..+......-.++.+ +- .-....+.+.++.. + ......+..+....
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~------~----~~~~~~~g~~~~P~--- 1332 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH------T----NYVTTSKGLTLLPK--- 1332 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH------B----CCEEETTTEEEEEB---
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH------h----hhccccCCccccCC---
Confidence 4677999999999999999765443322112222 11 12233444444431 0 00000011111110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcc-hhHHHHHHHHHhhcCcccCCC
Q 011655 286 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLAARLASFYERAGKVKCLGG 364 (480)
Q Consensus 286 p~~~r~~a~~~a~tiAEyfrd~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~-~l~s~l~~l~ERag~~~~~~~ 364 (480)
..|+..++++|++. +|..+.|-. .....|.+++|.-|-......
T Consensus 1333 --------------------~~gk~~VlFiDEin---------------mp~~d~yg~q~~lelLRq~le~gg~yd~~~~ 1377 (2695)
T 4akg_A 1333 --------------------SDIKNLVLFCDEIN---------------LPKLDKYGSQNVVLFLRQLMEKQGFWKTPEN 1377 (2695)
T ss_dssp --------------------SSSSCEEEEEETTT---------------CSCCCSSSCCHHHHHHHHHHHTSSEECTTTC
T ss_pred --------------------CCCceEEEEecccc---------------cccccccCchhHHHHHHHHHhcCCEEEcCCC
Confidence 25788999999986 355554432 345677888886553321000
Q ss_pred -CCCccceeEEEEEecCCCCCCChhhhhhhcee
Q 011655 365 -PERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 396 (480)
Q Consensus 365 -~~~~GSIT~i~~v~~~~~d~~dpv~~~~~~i~ 396 (480)
...--.+..+++.-.+++--..+++....+++
T Consensus 1378 ~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1378 KWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp CEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred cEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 00012367787777775333345555555555
No 423
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.72 E-value=17 Score=39.43 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=34.0
Q ss_pred ccccccccccccCCCCCCCchHHHHHHhh----cCCCCEEEEEeeCCchhHHH
Q 011655 203 LFPSVLGGTCAIPGAFGCGKTVISQALSK----YSNSDTVVYVGCGERGNEMA 251 (480)
Q Consensus 203 l~PigkGqr~~I~g~~g~GKT~L~~~ia~----~~~~dv~V~~~iGer~~Ev~ 251 (480)
.+.+.++.-++|.|.+|+|||+++..|+. ....+-+-+.+|+-++.|..
T Consensus 208 ~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs 260 (574)
T 2iut_A 208 ITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELS 260 (574)
T ss_dssp EEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHH
T ss_pred EEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhH
Confidence 45567788999999999999999986543 22333344556776665553
No 424
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=80.69 E-value=0.56 Score=45.01 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+...+.|.|++|+|||+++..+++.
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3335999999999999999999876
No 425
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=80.63 E-value=0.38 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=9.4
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+.++
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 426
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.58 E-value=0.47 Score=42.59 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=|++|+|.+|+|||+|+..+.++.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 379999999999999999988753
No 427
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.53 E-value=0.47 Score=41.89 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=21.1
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-=|+.++|.+|+|||+|+..+.++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=80.33 E-value=0.53 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|.+|+|||+|+..+..+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.19 E-value=0.64 Score=47.64 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.9
Q ss_pred cccccc--cccCCCCCCCchHHHHHHhhc
Q 011655 206 SVLGGT--CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 206 igkGqr--~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-.|++ +.|.|++|+||||++..|++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 446777 999999999999999988764
No 430
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=80.16 E-value=0.55 Score=41.84 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++++|.+|+|||+|+..+.++
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 431
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.13 E-value=0.44 Score=42.97 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.3
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
|+.|+|++|+|||+|+..+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999864
No 432
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.08 E-value=0.6 Score=41.84 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++|+|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 433
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.99 E-value=0.23 Score=45.08 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred cccCCCCCCCchHHHHHHhhcC
Q 011655 212 CAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+.|.|++|+||||++..|++..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998754
No 434
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.89 E-value=0.51 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++|+|.+|+|||+|+..+..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 37899999999999999998764
No 435
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.84 E-value=0.51 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.++
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998765
No 436
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=79.81 E-value=0.51 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 437
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=79.77 E-value=0.5 Score=45.25 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++++|++|+|||||+..+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
No 438
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=79.69 E-value=0.52 Score=42.26 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998765
No 439
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=79.65 E-value=0.41 Score=42.42 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|.+|+|||+|+..+..+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999987653
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=79.58 E-value=0.53 Score=42.98 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|++|+|||+|+..+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999875
No 441
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.52 E-value=0.5 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|++|+|||+|+..+.++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999998764
No 442
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=79.34 E-value=0.6 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++.|+|.+|+|||+|+..+..+
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 443
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.29 E-value=1 Score=44.19 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=30.8
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC-CC-EEEEEeeCCchhHH
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN-SD-TVVYVGCGERGNEM 250 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~-~d-v~V~~~iGer~~Ev 250 (480)
.+..+.|.|++|+|||+++..|++... .+ -+|++-|+.-..+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL 68 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH
Confidence 356789999999999999999988642 22 25566666655543
No 444
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.28 E-value=0.68 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+...+.|.|++|+|||+++..+++.
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 3335899999999999999999876
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.18 E-value=0.55 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+++++|++|+|||+|+..+.++
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999865
No 446
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=79.12 E-value=0.66 Score=42.46 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..+.++
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999998875
No 447
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=79.09 E-value=0.58 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.5
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=|++++|.+|+|||+|+..+.++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999988765
No 448
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.02 E-value=0.47 Score=51.51 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=25.7
Q ss_pred eecccccccccc-----ccccCCCCCCCchHHHHHHhhc
Q 011655 199 VLDALFPSVLGG-----TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 199 aID~l~PigkGq-----r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+|.|-.+|-+. .++|+|++|+|||||+..|+.-
T Consensus 30 ~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 30 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 355555555442 3899999999999999999865
No 449
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=79.02 E-value=0.83 Score=41.67 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCC
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
+..++|.|++|+||||++..+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999998643
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=78.87 E-value=2.8 Score=43.06 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
+..-+.|.|++|+||||++..+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457789999999999999998754
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.72 E-value=0.55 Score=42.86 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-++.|.|.+|+|||||+..++++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998876
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.53 E-value=0.59 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++++|.+|+|||+|+..+.++.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999988753
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=78.50 E-value=0.51 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=20.5
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=|++|+|++|+|||+|+..+..+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998764
No 454
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=78.31 E-value=0.51 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.3
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++|+|++|+|||||+..|+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 399999999999999998753
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=78.15 E-value=0.64 Score=45.62 Aligned_cols=24 Identities=13% Similarity=0.391 Sum_probs=17.8
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+-.++|.|++|+||||++..+++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998874
No 456
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=78.13 E-value=0.44 Score=42.37 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=5.0
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
=+++|+|++|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988765
No 457
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=78.10 E-value=1 Score=46.75 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=27.0
Q ss_pred ccccCCCCCCCchHHHHHHhhcC---CC-CEEEEEeeCCchhHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS---NS-DTVVYVGCGERGNEM 250 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~---~~-dv~V~~~iGer~~Ev 250 (480)
-+.|.|++|+|||+++..++++. +. .+.+.+..+.-..++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKIL 90 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHH
Confidence 78999999999999999877542 22 345555444333333
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.05 E-value=0.72 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.+.|.|++|+|||+|+..||+..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 459
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=77.97 E-value=0.63 Score=41.80 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
No 460
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.97 E-value=0.8 Score=43.81 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
..+.|.|++|+|||+++..+++.
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34899999999999999999876
No 461
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.90 E-value=0.73 Score=42.01 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++|.|++|+|||||+..|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999988764
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=77.64 E-value=0.65 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|++|+|.+|+|||+|+..+.++.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 68999999999999999987653
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.48 E-value=0.67 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|++|+|||+|+..+.++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998765
No 464
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=77.48 E-value=4.4 Score=40.52 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++.-+++|.|.+|+|||||+..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999988754
No 465
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=77.37 E-value=0.79 Score=42.86 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHHHHHHhhcC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
|+.|+|++|+|||+|+..+..+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 78999999999999999988753
No 466
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=77.34 E-value=0.55 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.9
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++|+|.+++|||+|+..+...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 47999999999999999999865
No 467
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.19 E-value=2.7 Score=44.78 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=20.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+...+.|.|.+|+||||++..|+.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998854
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=77.15 E-value=0.64 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++++|.+|+|||+|+..+.++
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999998764
No 469
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=78.58 E-value=0.5 Score=42.44 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.1
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+.=|++++|.+|+|||+|+..+.++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 3348999999999999999887754
No 470
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=76.88 E-value=0.83 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred cccccCCCCCCCchHHHHHHhhcC
Q 011655 210 GTCAIPGAFGCGKTVISQALSKYS 233 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~~ 233 (480)
=|++++|.+|+|||+|+..|..+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999988653
No 471
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=76.71 E-value=0.83 Score=41.80 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++.|+|++|+|||+|+..+..+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998865
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.61 E-value=0.83 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+.|.|++|+||||++..|++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999974
No 473
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=76.61 E-value=0.85 Score=52.23 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=27.6
Q ss_pred eeccccccccccccccCCCCCCCchHHHHHHh
Q 011655 199 VLDALFPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 199 aID~l~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
.-|.-+.+.+|+-++|.||.|+||||++.+|+
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34666778889999999999999999999883
No 474
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.56 E-value=0.95 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCchHHHHHHhhc
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+...++|+|+||+|||+|+..|++.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34456799999999999999998876
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.56 E-value=0.81 Score=46.45 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-++|.|++|+|||+|+..|++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 378999999999999999998754
No 476
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.30 E-value=0.77 Score=43.25 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++|+|.+|+|||+|+..|...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998764
No 477
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=76.19 E-value=0.73 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
--++.|.|.+|+|||||+..++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999998875
No 478
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=76.13 E-value=0.83 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.4
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-+++++|.+|+|||||+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999863
No 479
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=76.06 E-value=0.74 Score=41.17 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.++|.+|+|||+|+..+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999977654
No 480
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=76.00 E-value=0.87 Score=42.29 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|+.|+|.+|+|||+|+..+...
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999998753
No 481
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=75.93 E-value=0.93 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=22.9
Q ss_pred ccccccccCCCCCCCchHHHHHHhh
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~ 231 (480)
.+|+.++|.||.|+|||||+.+|+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999998764
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.84 E-value=0.75 Score=43.04 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.2
Q ss_pred cccccccCCCCCCCchHHHHHHhhcCC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
||..+.|.|..|+||||++..|++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456688999999999999999998764
No 483
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.81 E-value=0.89 Score=41.52 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.2
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.++|.|++|+|||||+..|++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999988764
No 484
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.34 E-value=11 Score=48.74 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCCceeeecccchHHHHHHHHHhhhcCCCCCCCCCcc-hhHHHHHHHHHhhcCcccCCCC-CCccceeEEEEEecCCCCC
Q 011655 307 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLAARLASFYERAGKVKCLGGP-ERTGSVTIVGAVSPPGGDF 384 (480)
Q Consensus 307 ~G~dVlll~Dsltr~a~A~reis~~~ge~p~~~gyp~-~l~s~l~~l~ERag~~~~~~~~-~~~GSIT~i~~v~~~~~d~ 384 (480)
.|+.+++++|++. +|..+-|.. ...+-|..++|.-|-+...+.. ..--.+..+++.-+|++.-
T Consensus 1372 ~Gk~~VlFiDDiN---------------mp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gG 1436 (3245)
T 3vkg_A 1372 LGKWLVVFCDEIN---------------LPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAG 1436 (3245)
T ss_dssp TTCEEEEEETTTT---------------CCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTT
T ss_pred CCceEEEEecccC---------------CCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCC
Confidence 4899999999996 466665654 4668888999977655310000 0011345677766676444
Q ss_pred CChhhhhhhceecE
Q 011655 385 SDPVTSATLSIVQV 398 (480)
Q Consensus 385 ~dpv~~~~~~i~dg 398 (480)
..|++....+++..
T Consensus 1437 r~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1437 RVQLTHRFLRHAPI 1450 (3245)
T ss_dssp CCCCCHHHHTTCCE
T ss_pred CccCCHHHHhhceE
Confidence 56777666666544
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=75.26 E-value=0.55 Score=41.42 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=20.7
Q ss_pred ccccccCCCCCCCchHHHHHHhhc
Q 011655 209 GGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 209 Gqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-=|++++|++|+|||+|+..+..+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999999998653
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.20 E-value=1 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-+.|.||+|+|||+|+..+++..+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 478899999999999999998754
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.17 E-value=1 Score=45.51 Aligned_cols=24 Identities=42% Similarity=0.372 Sum_probs=21.1
Q ss_pred ccccCCCCCCCchHHHHHHhhcCC
Q 011655 211 TCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
-+.|.||+|+|||+|+..|++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 467899999999999999998754
No 488
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=75.12 E-value=0.89 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCchHHHHHHhhc
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|-.+++|+|.+|+|||||+..+..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998764
No 489
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.10 E-value=0.89 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred cccCCCCCCCchHHHHHHhhc
Q 011655 212 CAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 212 ~~I~g~~g~GKT~L~~~ia~~ 232 (480)
++|+|++|+|||||+..|+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 399999999999999999865
No 490
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.03 E-value=0.81 Score=44.43 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
.++|.|++|+||||++..|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 491
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=74.90 E-value=0.98 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHHHHHHhh
Q 011655 211 TCAIPGAFGCGKTVISQALSK 231 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~ 231 (480)
+++++|.+|+|||+|+..+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999875
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=74.84 E-value=0.96 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.7
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
-|++|+|++|+|||||+..|+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998765
No 493
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=74.83 E-value=0.5 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred cccccCCCCCCCchHHHHHHhhc
Q 011655 210 GTCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 210 qr~~I~g~~g~GKT~L~~~ia~~ 232 (480)
+..+|+||+|+|||||+..|+..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999998764
No 494
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.67 E-value=1.1 Score=43.93 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
.+.|.||||+|||.++..||+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 495
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=74.41 E-value=0.49 Score=42.87 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHHHHHHhhc
Q 011655 211 TCAIPGAFGCGKTVISQALSKY 232 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~ 232 (480)
|++|+|.+|+|||+|+..+.++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988753
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=74.35 E-value=1.4 Score=44.14 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=27.6
Q ss_pred cccccccCCCCCCCchHHHHHHhhcC----CCCEEEEEeeC
Q 011655 208 LGGTCAIPGAFGCGKTVISQALSKYS----NSDTVVYVGCG 244 (480)
Q Consensus 208 kGqr~~I~g~~g~GKT~L~~~ia~~~----~~dv~V~~~iG 244 (480)
.|..++|.|++|+||||++.++.+.. ..|.+.+-..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 47789999999999999999987753 23555544444
No 497
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=74.17 E-value=0.38 Score=48.66 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=26.6
Q ss_pred ccceec-cccccccccccccCCCCCCCchHHHHHH
Q 011655 196 GQRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQAL 229 (480)
Q Consensus 196 GIraID-~l~PigkGqr~~I~g~~g~GKT~L~~~i 229 (480)
+++.++ .=+.+.+| ..+|.|+.|+|||||+..|
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 444443 34578899 9999999999999999887
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.07 E-value=0.74 Score=43.76 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.6
Q ss_pred ccccccccCCCCCCCchHHHHHHhhcCC
Q 011655 207 VLGGTCAIPGAFGCGKTVISQALSKYSN 234 (480)
Q Consensus 207 gkGqr~~I~g~~g~GKT~L~~~ia~~~~ 234 (480)
.++..+.|.|+.|+||||++..|++...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3556789999999999999999998763
No 499
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.06 E-value=2.7 Score=40.28 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=27.5
Q ss_pred ccccCCCCCCCchHHHHHHhhc---CCCCEEEEEeeCC-chhHHHHHHH
Q 011655 211 TCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGE-RGNEMAEVLM 255 (480)
Q Consensus 211 r~~I~g~~g~GKT~L~~~ia~~---~~~dv~V~~~iGe-r~~Ev~e~~~ 255 (480)
++.+.+++|+||||++..++.. ...++ +++-+.. ...+...++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V-~v~d~D~q~~~~~~al~~ 55 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV-MAGVVETHGRAETEALLN 55 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE-EEEECCCTTCHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE-EEEEeCCCCChhHHHHhc
Confidence 3667899999999998887654 23344 4444443 3444445553
No 500
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=73.91 E-value=0.77 Score=52.48 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=26.5
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHh
Q 011655 201 DALFPSVLGGTCAIPGAFGCGKTVISQALS 230 (480)
Q Consensus 201 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia 230 (480)
|.-+.+.+|+-++|.||.|+|||||+.+|+
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 555667889999999999999999999875
Done!