BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011656
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/481 (75%), Positives = 419/481 (87%), Gaps = 2/481 (0%)
Query: 2 TAIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVED 59
A+ + +ALSLPIS R + ++ KK V+G FRVFA+FG+E GLV+KKS W LFDVED
Sbjct: 3 AAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVED 62
Query: 60 PRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKS 119
PRSK P KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKS
Sbjct: 63 PRSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKS 122
Query: 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC 179
IGT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+
Sbjct: 123 IGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPS 182
Query: 180 ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFE 239
+S + S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTMVP +CFE
Sbjct: 183 SSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFE 242
Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 299
+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L
Sbjct: 243 QPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKL 302
Query: 300 RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNL 359
VKIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHGLLLDNL
Sbjct: 303 LKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNL 362
Query: 360 LDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK 419
LDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISK
Sbjct: 363 LDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISK 422
Query: 420 PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ 479
PGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQ
Sbjct: 423 PGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQ 482
Query: 480 V 480
V
Sbjct: 483 V 483
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/483 (76%), Positives = 418/483 (86%), Gaps = 7/483 (1%)
Query: 4 IATAAALSL-PISLYRPA-KINTKKSV--RGGFRVFALFGEEGGLVDKKSAWSTLFDVED 59
+ T A+LSL P L +P+ + ++K V GG +V+A+ G++G K +AW LF V+D
Sbjct: 1 MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD 60
Query: 60 PRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKS 119
P +VP KGKFLDVNQALEV R+DIQYCDWRARQD+LTIM+LH KVVEVLNPLAR++KS
Sbjct: 61 PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS 120
Query: 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC 179
IGT++KELAELQE+LA+AH QVH+SE RV++ALDKLA ME LVNDRLLQD +S + C
Sbjct: 121 IGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC 180
Query: 180 AS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 237
S PSTS S +V K PR+SLNVSGPVQPYN LKNFW+PVAFS+DLKDDTMVP DC
Sbjct: 181 TSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDC 239
Query: 238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
FEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST
Sbjct: 240 FEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 299
Query: 298 QLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLD 357
++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPPSGF IHAEIVMELP+EHGLLLD
Sbjct: 300 KMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLD 359
Query: 358 NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGI 417
NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGYWDPYPIDMEFRPPCMVLSTIGI
Sbjct: 360 NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGI 419
Query: 418 SKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 477
SKPGKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRMSLDFA +KHVPFM LW HFA
Sbjct: 420 SKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFA 479
Query: 478 EQV 480
E+V
Sbjct: 480 EKV 482
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/446 (42%), Positives = 263/446 (58%), Gaps = 55/446 (12%)
Query: 89 DWRARQDVLTIMLLHE----KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHIS 144
++ RQD + + E KV E L+ AR+ ++G ++ +L L+ +AQA ++ ++
Sbjct: 125 EYVTRQDAAATLAMIEEANRKVEESLSEEAREKTAVGDLRDQLESLRAQVAQAQERLAMT 184
Query: 145 EARVATALDKLAYM--EALVNDRLLQDRHTSGTDQTCASPST------------------ 184
++RV L ++ + EA +R+ + ++ + ST
Sbjct: 185 QSRVEQNLQRVNELKAEATTLERMRKASDLDIKERERIAISTVAAKGPASSSSSAAAVSA 244
Query: 185 ---------SKQSLDIVKGKLPRKSLNVSGPVQPYNTR------------------LKNF 217
+ + V ++P S P ++ L+NF
Sbjct: 245 PATSATLTVERPAATTVTQEVPSTSYGTPVDRAPRRSKAAIRRSRGLESSMEIEEGLRNF 304
Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
W+P FS L DT+VPF+ F EPWV+FR + G P C+++ CAHR CPL LG V EG++
Sbjct: 305 WYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVM 364
Query: 278 CPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL-PP 335
CPYHGWE++ DG C KMPST RNV + +LPC E++G IW+WPGD P T+P PP
Sbjct: 365 CPYHGWEFNGDGACTKMPSTPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDFAQPP 424
Query: 336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 395
GF IHAEI++++P+EHGLL++NLLDLAHAPFTHTSTFA+GW VP VKF L G+
Sbjct: 425 EGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFARGWPVPDFVKFHA-NKALSGF 483
Query: 396 WDPYPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYR 454
WDPYPIDM F+PPCM LSTIG+++PGK + G QC HLHQLHVC+PS + TRLLYR
Sbjct: 484 WDPYPIDMAFQPPCMTLSTIGLAQPGKIMRGVTASQCKNHLHQLHVCMPSKKGHTRLLYR 543
Query: 455 MSLDFASVLKHVPFMQYLWRHFAEQV 480
MSLDF ++HVPF+ +W+ A QV
Sbjct: 544 MSLDFLPWMRHVPFIDRIWKQVAAQV 569
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 239/400 (59%), Gaps = 44/400 (11%)
Query: 123 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA----LVNDRL------------ 166
M+ +L LQ+++++A ++ SEARVA L ++ ++A L RL
Sbjct: 1 MQSKLLGLQDEISEARDKLRTSEARVAQNLKRVDELKAEAASLERMRLASSSSTDSTVSI 60
Query: 167 ----------------------LQDR-HTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNV 203
+Q R SG T + S + +G P+ S +
Sbjct: 61 ASRGGAAVAATTSVPDHVEREGIQSRVRGSGMASTSYPSHVPQPSQAVRRGPKPKDSRRL 120
Query: 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
++ L+NFW+P F+ L+ MVPFD F PWV+FR + P C++++CAHRA
Sbjct: 121 RSSLE-LEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAPTCIKDSCAHRA 179
Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGD 322
CPL LG V G +QCPYHGWE+ G C KMPST++ V + +LPC E++G +W+WPGD
Sbjct: 180 CPLSLGKVINGHVQCPYHGWEFDGSGACTKMPSTRMCHGVGVAALPCVEKDGFVWVWPGD 239
Query: 323 EPPTATIPCLL-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS 381
PP P PP+G+++HAEI++++P+EHGLL++NLLDLAHAPFTHT+TFA+GW +P
Sbjct: 240 GPPPDLPPDFTAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTHTTTFARGWPIPE 299
Query: 382 LVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHV 440
V+F L G WDPYPI M F PPC+ LSTIG+S+PGK + G +C HLHQLHV
Sbjct: 300 AVRFHA-TKMLAGDWDPYPISMSFNPPCIALSTIGLSQPGKIMRGYKAEECKRHLHQLHV 358
Query: 441 CLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 480
C+PS TRLLYRMSLDF KHVPF+ LW+ A QV
Sbjct: 359 CMPSKEGHTRLLYRMSLDFWGWAKHVPFVDVLWKKIAGQV 398
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 35/285 (12%)
Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
W+P+ + ++ +D + ++ V+++ +G C ++ C HR L G + +GR++
Sbjct: 88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147
Query: 278 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332
C YHGW++ +GKC K+P S ++ + +K+ + +G++W+W + P P
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205
Query: 333 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 383
LP P F+I ELP +H +LL+NL+D AH P +H T AK LV
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLV 263
Query: 384 KFLTPAS--GLQGYWDPYPID------MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHL 435
+T S G G W + F PC++ + + EG++ +
Sbjct: 264 FEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNN------REFEGKDG--VKNYF 315
Query: 436 HQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 480
L +C P+ + K+ L+ R + S L V Q+ W A +V
Sbjct: 316 SGLFLCRPTGQGKSMLIVRFGVTKRSPLVSV-LPQWFWHQNACKV 359
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 29/257 (11%)
Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
W+P+ + ++ D + +++ V+FR + C ++ C HR L G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162
Query: 278 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 330
C YHGW++ +GKC K+P ++ +K+ + +G++W+W + P + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222
Query: 331 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 386
GF+ ELP +H +LL+NL+D AH P +H T AK +L +
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQALGFEV 281
Query: 387 TPAS--GLQGYW-----DPYPIDMEFRPPCMVLSTIGI-SKPGKLEGQNTRQCATHLHQL 438
T + G G+W P + F PC++ + I K G++ H L
Sbjct: 282 TERTDRGFAGWWGREKDGSKPNFLRFEAPCVLQNNREIVDKNGEI---------NHFSGL 332
Query: 439 HVCLPSSRKKTRLLYRM 455
+C P+ + K+ L+ R
Sbjct: 333 FLCRPTGQGKSMLIVRF 349
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 299
E VI+RG +++ C HR PL LGS+ +G++ C YHG DG+ MP+ ++
Sbjct: 5 ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64
Query: 300 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 353
+ I++ P E+ G IW+WPGD P L+P + + + + ++
Sbjct: 65 QAFPCIRAFPAQERHGFIWVWPGD--AALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122
Query: 354 LLLDNLLDLAHAPFTHTST------------------------FAKGWSVPSLVKFLTPA 389
L++DNL+DL H + H S+ F +G P +
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDRLITGRFMEGILAPPFWRAALRG 182
Query: 390 SGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 422
+GL D P+D F PP VL +G++ G+
Sbjct: 183 NGLA---DDVPVDRWQICRFTPPSHVLIEVGVAHAGR 216
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 34/239 (14%)
Query: 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
KN W+ VA + D D + E V +RG +G V++ C HR PL LG V +G
Sbjct: 4 KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62
Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 333
++ C YHG E +GK MP +++ IKS E+ G IW+WPGD P L+
Sbjct: 63 KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120
Query: 334 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK---- 384
+ + E + + ++ L++DNL+DL H + H S+ + + V
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVE 180
Query: 385 -----------------FLTPASGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 422
F A G D P+D F PP VL +G++ GK
Sbjct: 181 GDTVITSRYMDNVMAPPFWRAALRGNGLADDVPVDRWQICRFAPPSHVLIEVGVAHAGK 239
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
++N W+ A+ T++ + + EP +++R G ++N C HR+ PLH+G
Sbjct: 3 IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62
Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 331
++C YHG +++ G C ++P + K IKS P E+ ++WIW GD P P
Sbjct: 63 DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120
Query: 332 LLPPSGFEIHAEIVME-----LPIEHGLLLDNLLDLAHAPFTHTSTFA 374
+ + E M+ + L++DNLLD H + H +T
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 205 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
G P ++ +W P ST+L+ + V E V FR G G + + C HR
Sbjct: 14 GRGTPMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRG 73
Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWI 318
L +G V EG ++C YHGW++S +GKC MPS + +N V++ P E G++W+
Sbjct: 74 VSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWV 133
Query: 319 WPGDEPPTATIPCL----LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTS 371
+ G +P L LP + ++ I ++ L+ +D +H F H
Sbjct: 134 YMGTRKVLPELPRLEVLNLPENEVDV---ICLQRKSNWLQNLEGEIDTSHFNFLHVG 187
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
+KN W+ +TD + E V+FR DG +++ C HR PL LG V +
Sbjct: 3 VKNTWYVAGMATDCSRKPLA-RTFLNEKVVLFRTHDGHAVALEDRCCHRLAPLSLGDVED 61
Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTAT--- 328
I+C YHG ++ G C ++P + + ++ P E+ G++WIW GD P A
Sbjct: 62 AGIRCRYHGMVFNASGACVEIPGQEQIPPGMCVRRFPLVERHGLLWIWMGD-PARANPDD 120
Query: 329 --------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374
P SG+ IH + + L++DNLLD H + H +T
Sbjct: 121 IVDELWNGAPEWRTDSGY-IHYQ------ANYQLIVDNLLDFTHLAWVHPTTLG 167
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 197 PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256
P L+ P L+ +W PVA S D+ D + E V+FR K G PG +
Sbjct: 24 PDPQLSAVAKGTPTGEYLRRYWQPVALSADVTDRPQM-VRILGEDLVLFRDKAGRPGLLY 82
Query: 257 NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKM---PSTQLRNVKIKS--LPCFE 311
C HR L+ G V E I+C YHGW ++ DG C P LR + P E
Sbjct: 83 PRCMHRGTSLYYGHVEEAGIRCCYHGWLFAVDGTCLNQPCEPEGGLRREAARQPWYPVEE 142
Query: 312 QEGMIWIWPGDEPPTATIP-------------CLLPPSGFEIHAEIVMELPIEHGLL--L 356
+ G+++ + G +P + GF +A+ V + + + L
Sbjct: 143 RYGLVFAYMGPPEKKPVLPRYDILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNW 202
Query: 357 DNLLDLAHAPFTHTS----TFAKGWSVPSLVKFLTPASGL 392
+N++D H H++ FA+ + + V F G+
Sbjct: 203 ENIMDPYHVYILHSTFSGIQFAENFKILPRVDFEAVDGGV 242
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 41/181 (22%)
Query: 218 WFPVAFSTDLKD-----------DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 266
W+PV DL D +V +D E+ W + + +TC HR PL
Sbjct: 85 WYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKV----------MDDTCPHRLAPL 134
Query: 267 HLGSVNE-GRIQCPYHGWEYSTDGKCEKMPST--------QLRNVKIKSLPCFEQEGMIW 317
G +++ GR+QC YHGW ++ G C+ +P + + P Q +IW
Sbjct: 135 SDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIW 194
Query: 318 IWPGDEPPTAT---------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFT 368
WP +P IP L PS ++ ++P + +L++NL+D AH P+
Sbjct: 195 FWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGN--RDIPYGYDVLVENLMDPAHVPYA 252
Query: 369 H 369
H
Sbjct: 253 H 253
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 31/231 (13%)
Query: 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSV 271
+ ++ W+PV+ DL + PF V+ F D + C HR PL G +
Sbjct: 83 KWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRL 142
Query: 272 NE-GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK------IKSLPCFEQEGMIWIW 319
+E G +QC YHGW + G C ++P + R VK IK P +G++++W
Sbjct: 143 DENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIK-FPTMVSQGLLFVW 201
Query: 320 PGD---------EPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTH- 369
P + EPP +P F I +L + L++N+ D +H F H
Sbjct: 202 PDENGWDRANSIEPP--RLPDDFDKPEFST-VTIQRDLFYGYDTLMENVSDPSHIDFAHH 258
Query: 370 --TSTFAKGWSVPSLVKFLTPASGLQGYWDPYP-IDMEFRPPCMVLSTIGI 417
T + +P V+ P G QG D P I +F PC ++ I +
Sbjct: 259 KVTGRRDRAKPLPFKVESSGPW-GFQGANDDSPRITAKFVAPCYSMNKIEL 308
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 209 PYNTRLKNFWFPVAFSTDLK--DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 266
P ++ W PV ++ D T V F E V+FR DG G + C HR L
Sbjct: 18 PMGQMMRRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSL 77
Query: 267 HLGSVNEGRIQCPYHGWEYSTDGKCEKM-----PSTQLRNVKIKSLPCFEQEGMIWIWPG 321
G ++C YHGW+ DG +M S + VK + E G +W + G
Sbjct: 78 IYGRNENSGLRCLYHGWKMDVDGNVVEMVSEPAASNMCQKVKHTAYKTREWGGFVWAYMG 137
Query: 322 DEPPTATIPCLLPPS 336
P IP +PP+
Sbjct: 138 ---PQDAIPEFVPPA 149
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 271
+N W+PV ++++ + T VP E ++ G +Q+ C HR L +
Sbjct: 25 FRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGVTLSDRVECY 83
Query: 272 NEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 326
++ I C YHGW Y DG+ + S Q+ +K+ P E +G+I+++ GD PT
Sbjct: 84 SKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIFVYVGDGEPT 143
Query: 327 ATIPCLLPPSGF-----EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG 376
I + P GF IH + + + L +N D H S KG
Sbjct: 144 PLIEDV--PPGFLDENRAIHGQHRL-VASNWRLGAENGFDAGHVLIHKNSILVKG 195
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNE 273
N W+ V S L ++ ++ + + R + G + C H ++G V +
Sbjct: 79 NGWYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYITDSYCPHIGANFNIGGRVVRD 138
Query: 274 GRIQCPYHGWEYSTD-GKCEKMPSTQLR---NVKIKSLPCFEQEGMIWIW---PGDEPPT 326
IQCP+HGW +S + GKC ++P + R K+ + PC E+ I++W G EP
Sbjct: 139 NCIQCPFHGWIFSAETGKCVEVPYDEGRIPEQAKVTTWPCIERNNNIYLWYHCDGAEPEW 198
Query: 327 ATIPCLLPPSGF-EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST 372
GF + E+ + +N D+AH + H S
Sbjct: 199 EIPEITEITDGFWHLGGRTEHEVMCHIQEIPENGADIAHLNYLHKSA 245
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
TR W + + D + + F V+F G + C H L G+V
Sbjct: 20 TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEP-P 325
+ CP+H W + DG+C+ +P + R + +S + G++++W G+ P P
Sbjct: 80 KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 326 TATIPCLLPPSGFEIHAEIVMELPIEHGL---LLDNLLDLAHAPFTH 369
IP + + E + IE ++DN+ D+AH + H
Sbjct: 140 AVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIH 186
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 271
+N W+PV FS ++ + E ++ R DG C+++ C HR L +
Sbjct: 25 FRNHWYPVMFSKEIDEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 272 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 324
+ I C YH W Y DG C+ + S Q+ K+K+ P E +G ++I+ GD P
Sbjct: 84 TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 325 PTATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDNLLDLAHAPFTHTSTFAK 375
P A PP+ + EI+ + I L ++N D +H S K
Sbjct: 144 PLARD---TPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVK 194
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--R 300
V+F G + C H L G+V + CP+H W + DGKC+ +P + R
Sbjct: 49 VVFADSKGELNVLDAYCRHMGGDLSKGTVKGDEVACPFHDWRWGGDGKCKLVPYAKRTPR 108
Query: 301 NVKIKSLPCFEQEGMIWIW---PGDEP-PTATIPCLLPPSGFEIHAEIVMELPIEHG--- 353
+ +S + G++++W G+ P P IP + E + IE
Sbjct: 109 LARTRSWHTDVRGGLLFVWHDHEGNPPQPEVRIPEIPEWHSGEWTDWKWNSMLIEGSNCR 168
Query: 354 LLLDNLLDLAHAPFTH 369
++DN+ D+AH + H
Sbjct: 169 EIIDNVTDMAHFFYIH 184
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 275
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 276 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 326
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 327 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAHAPFTH 369
++ LP G E+H A P ++DN L+ H H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAH 216
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 275
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 276 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 326
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 327 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAHAPFTH 369
++ LP G E+H A P ++DN L+ H H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAH 216
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2
SV=1
Length = 446
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-STQLR 300
+++ R G N C HRA L GS + CPYHGW Y DG K +T+ +
Sbjct: 152 YLVSRDGQGELHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLAKASKATETQ 211
Query: 301 NVKIKSL 307
N+ K L
Sbjct: 212 NLDPKEL 218
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293
+++ R +G N C HRA L GS + CPYHGW Y DG K
Sbjct: 145 YLVSRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMDGSLAK 196
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO
PE=2 SV=1
Length = 442
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN 301
+++ R G N C HRA L G+ + CPYHGW + DG K T+ +
Sbjct: 148 YLVCRDGQGKVHAFHNVCTHRASILACGTGKKSCFVCPYHGWVFGLDGSLMKATKTENQV 207
Query: 302 VKIKSLPCFEQEGMIW 317
K L + IW
Sbjct: 208 FDPKELGLVTLKVAIW 223
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293
+++ R +G N C HRA L GS + CPYHGW Y +G K
Sbjct: 146 YLVCRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMNGSLTK 197
>sp|Q7N4W0|HCAE_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+ V+ R K+G N C HR+ + + S N CPYHGW Y DG+ +P
Sbjct: 65 EDSVVVVRQKNGSVKAFLNQCRHRSMRVCYADSGNTRAFTCPYHGWSYGVDGRLIDVP 122
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 295
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 229 DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYST 287
DD +V + +P +I R K G V N C+HR L N C +HGW +S
Sbjct: 69 DDYLVS-NIGRQPVIITRNKAGDVSAVINACSHRGAELCRRKQGNRSTFTCQFHGWTFSN 127
Query: 288 DGKCEKMPSTQLRN 301
GK K+ Q N
Sbjct: 128 TGKLLKVKDGQDDN 141
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 294
+P I R KDG N C+HR L S N+ C +HGW +S GK K+
Sbjct: 73 QPIFITRNKDGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKV 128
>sp|P0C618|BNZA_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA
PE=3 SV=1
Length = 450
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>sp|A5W4F2|BNZA_PSEP1 Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain
F1 / ATCC 700007) GN=bnzA PE=1 SV=1
Length = 450
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
+P +I R ++G + N C+HR L N+ CP+HGW ++ GK K+
Sbjct: 76 QPILIARNRNGELNAMINACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPS 135
Query: 299 LRNVKIKSLPCFEQEG 314
CF Q+G
Sbjct: 136 DAGYS----DCFNQDG 147
>sp|O52379|NAGG_RALSP Salicylate 5-hydroxylase, large oxygenase component OS=Ralstonia
sp. GN=nagG PE=1 SV=1
Length = 423
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG V+N CAHR C G+ + CPYH W YS G + +P
Sbjct: 75 IMVRDPDGGINVVENVCAHRGMRFCRERHGNAKD--FFCPYHQWNYSLKGDLQGVP 128
>sp|Q07944|BEDC1_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=bedC1 PE=1 SV=1
Length = 450
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDTAGNLINVP-- 133
Query: 298 QLRNVKIKSLPCFEQE 313
+ +S C +++
Sbjct: 134 ----YEAESFACLDKK 145
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFD-CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 272
+ W V ++D++ T+ + P ++R D ++TC H L G+++
Sbjct: 1 MNQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYA-TEDTCTHGIASLSEGTLD 59
Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
I+CP+HG ++ C MP++ V + +EG +++
Sbjct: 60 GDVIECPFHGGAFNV---CTGMPASSPCTVPLGVFEVEVKEGEVYV 102
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 228 KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYS 286
++ V +P ++ R G + N C HR L + N+ CP+H W Y
Sbjct: 62 NNNDFVTVQIGRQPMIVSRDGKGELHAMVNACEHRGATLTRVAKGNQSVFTCPFHAWCYK 121
Query: 287 TDGKCEKMPS 296
+DG+ K+ +
Sbjct: 122 SDGRLVKVKA 131
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 218 WFPVAFSTDLKDDTMVPFDCF-----EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 272
W V +S +K+ D F + +V+ R ++G N C+H A L G+
Sbjct: 96 WQAVGYSDQIKESR----DFFTGRLGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGR 151
Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSL 307
+ C YHGW YS G K +T++ ++ SL
Sbjct: 152 KSCFVCLYHGWTYSLSGSLVK--ATRMSGIQNFSL 184
>sp|Q93SW8|UCRIB_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC2 PE=3 SV=1
Length = 178
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 240 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPA- 143
Query: 298 QLRNVKIKSLPCFEQEGMIWIWPGDE 323
N +K + ++ IWI P E
Sbjct: 144 ---NRPLKLVQVQVKDDYIWISPWQE 166
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG N C HR L H + N C YHGW + ++G+ + +P
Sbjct: 63 IVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVP 116
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG N C HR L H + N C YHGW + +G+ + +P
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|Q93SW6|UCRIB_ANAVT Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3
SV=1
Length = 178
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 240 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPA- 143
Query: 298 QLRNVKIKSLPCFEQEGMIWI--WPGDEPPTATIP 330
N +K + ++ IWI W +P T P
Sbjct: 144 ---NRPLKLVHVQVKDDYIWISSWQETDPRTGEKP 175
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P ++ R KDG N C HR + + N C YHGW Y G +P
Sbjct: 81 EDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
>sp|Q3C1E3|TPDA1_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 1 OS=Comamonas sp. GN=tphA2I PE=1 SV=1
Length = 413
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDG 289
E P V+ R D +N CAHR + L S QC YH W Y+ G
Sbjct: 62 ETPIVVVRDADQEIYAFENRCAHRGALIALEKSGRTDSFQCVYHAWSYNRQG 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,580,041
Number of Sequences: 539616
Number of extensions: 8032398
Number of successful extensions: 16685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 16595
Number of HSP's gapped (non-prelim): 89
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)