Query 011656
Match_columns 480
No_of_seqs 417 out of 2207
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 3E-128 6E-133 1022.8 44.1 479 1-480 1-483 (536)
2 PLN00095 chlorophyllide a oxyg 100.0 5.8E-51 1.3E-55 417.3 24.3 264 209-480 64-361 (394)
3 PLN02518 pheophorbide a oxygen 100.0 2.5E-44 5.4E-49 387.2 26.6 260 209-477 82-371 (539)
4 TIGR03228 anthran_1_2_A anthra 100.0 6E-37 1.3E-41 323.4 12.3 180 177-374 15-218 (438)
5 COG4638 HcaE Phenylpropionate 100.0 1.9E-36 4.1E-41 313.1 13.0 183 177-376 4-199 (367)
6 TIGR03229 benzo_1_2_benA benzo 100.0 2.9E-35 6.3E-40 310.6 13.2 179 177-374 15-220 (433)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.1E-30 2.4E-35 234.2 12.2 122 204-325 4-125 (129)
8 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 2.7E-30 5.9E-35 235.6 12.3 132 201-332 5-142 (144)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 6.4E-30 1.4E-34 227.6 11.7 109 216-325 2-119 (123)
10 cd04338 Rieske_RO_Alpha_Tic55 100.0 1.8E-29 4E-34 227.6 12.2 115 211-325 11-130 (134)
11 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 1.4E-29 2.9E-34 232.7 11.1 132 178-325 2-148 (150)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 1.8E-28 4E-33 215.5 11.7 109 217-325 1-111 (115)
13 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 2.6E-28 5.7E-33 221.2 10.8 113 213-325 13-134 (138)
14 cd03532 Rieske_RO_Alpha_VanA_D 100.0 4E-28 8.7E-33 213.3 11.4 110 214-324 2-113 (116)
15 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 2.3E-27 5E-32 214.3 11.9 110 213-323 10-126 (136)
16 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 1.7E-27 3.8E-32 210.6 10.8 107 217-323 1-114 (118)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 2E-27 4.4E-32 213.1 10.2 108 218-325 1-127 (129)
18 cd03538 Rieske_RO_Alpha_AntDO 99.9 3.2E-27 6.9E-32 216.1 10.9 128 181-325 3-144 (146)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 8.7E-27 1.9E-31 208.8 10.8 114 212-325 3-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 1.3E-26 2.8E-31 202.7 10.1 108 218-325 1-116 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 6.3E-26 1.4E-30 201.6 11.0 110 216-325 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1E-25 2.3E-30 200.2 10.7 108 218-325 1-119 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.2E-24 2.6E-29 193.7 10.9 108 218-325 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 1.3E-24 2.8E-29 184.3 10.6 96 218-318 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 3.6E-24 7.8E-29 182.1 10.6 97 218-319 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 6.3E-24 1.4E-28 183.8 11.6 103 218-325 1-104 (108)
27 cd03529 Rieske_NirD Assimilato 99.9 2.8E-23 6.1E-28 178.7 10.0 96 218-318 1-102 (103)
28 TIGR02377 MocE_fam_FeS Rieske 99.9 3.9E-23 8.6E-28 177.5 10.7 99 217-319 1-100 (101)
29 TIGR02378 nirD_assim_sml nitri 99.9 5.1E-23 1.1E-27 177.4 9.7 99 217-320 1-105 (105)
30 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1E-22 2.2E-27 172.3 9.2 92 221-317 3-95 (95)
31 PRK09965 3-phenylpropionate di 99.9 2.5E-22 5.5E-27 173.8 10.0 100 217-322 2-103 (106)
32 PF00355 Rieske: Rieske [2Fe-2 99.8 4E-21 8.7E-26 162.4 8.1 92 217-313 1-96 (97)
33 PF13806 Rieske_2: Rieske-like 99.8 9.4E-21 2E-25 164.1 9.7 98 217-319 1-104 (104)
34 cd03467 Rieske Rieske domain; 99.8 1.8E-20 4E-25 159.0 10.1 95 218-316 1-97 (98)
35 PRK09511 nirD nitrite reductas 99.8 2.1E-20 4.6E-25 162.8 10.3 98 217-319 3-107 (108)
36 cd03477 Rieske_YhfW_C YhfW fam 99.8 6.6E-20 1.4E-24 155.1 9.1 88 221-313 2-89 (91)
37 COG2146 {NirD} Ferredoxin subu 99.8 1.1E-19 2.5E-24 157.9 10.3 101 216-320 3-105 (106)
38 cd03476 Rieske_ArOX_small Smal 99.7 7.6E-18 1.6E-22 150.8 9.7 95 220-319 5-114 (126)
39 cd03471 Rieske_cytochrome_b6f 99.7 3.4E-17 7.4E-22 146.3 10.2 91 228-323 21-114 (126)
40 TIGR02694 arsenite_ox_S arseni 99.6 7.9E-16 1.7E-20 138.3 9.5 95 220-319 8-116 (129)
41 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 8E-16 1.7E-20 133.3 7.8 72 224-296 14-89 (107)
42 cd03470 Rieske_cytochrome_bc1 99.6 3.2E-15 7E-20 133.9 10.0 92 223-318 5-125 (126)
43 PRK13474 cytochrome b6-f compl 99.5 9E-14 2E-18 131.5 9.7 89 227-320 72-163 (178)
44 TIGR01416 Rieske_proteo ubiqui 99.3 4.3E-12 9.4E-17 119.6 9.9 93 217-314 40-168 (174)
45 cd08878 RHO_alpha_C_DMO-like C 99.2 7.6E-11 1.6E-15 109.1 9.1 112 345-462 5-134 (196)
46 cd03475 Rieske_SoxF_SoxL SoxF 99.0 1.1E-09 2.3E-14 102.7 10.2 68 248-319 73-159 (171)
47 cd00680 RHO_alpha_C C-terminal 99.0 3.7E-09 8E-14 97.1 10.0 101 344-461 3-124 (188)
48 COG0723 QcrA Rieske Fe-S prote 98.7 3.4E-08 7.3E-13 93.2 6.5 77 238-318 82-164 (177)
49 PF08417 PaO: Pheophorbide a o 98.6 9E-08 1.9E-12 81.2 6.3 63 405-477 1-63 (92)
50 cd08885 RHO_alpha_C_1 C-termin 98.6 3.3E-07 7.1E-12 86.2 10.4 33 343-375 3-35 (190)
51 cd08883 RHO_alpha_C_CMO-like C 98.5 4E-07 8.7E-12 85.1 9.3 98 344-458 4-111 (175)
52 cd08886 RHO_alpha_C_2 C-termin 98.4 8.3E-07 1.8E-11 83.8 8.8 99 343-456 3-112 (182)
53 cd08887 RHO_alpha_C_3 C-termin 98.4 7.1E-07 1.5E-11 83.1 8.0 32 344-375 4-35 (185)
54 cd08884 RHO_alpha_C_GbcA-like 98.3 3.6E-06 7.8E-11 80.8 9.7 38 337-374 7-44 (205)
55 TIGR03171 soxL2 Rieske iron-su 98.2 2E-06 4.3E-11 87.6 6.9 69 247-319 173-276 (321)
56 KOG1671 Ubiquinol cytochrome c 98.2 1.8E-06 4E-11 82.1 4.6 52 246-297 140-191 (210)
57 cd08880 RHO_alpha_C_ahdA1c-lik 97.7 0.00011 2.4E-09 71.8 7.9 33 343-375 3-37 (222)
58 cd08881 RHO_alpha_C_NDO-like C 97.6 0.00011 2.4E-09 71.2 5.7 34 343-376 8-42 (206)
59 PF00848 Ring_hydroxyl_A: Ring 97.5 9.7E-06 2.1E-10 75.2 -2.4 31 345-375 11-41 (209)
60 cd08879 RHO_alpha_C_AntDO-like 97.2 0.00011 2.3E-09 72.5 0.5 32 343-374 3-34 (237)
61 cd08882 RHO_alpha_C_MupW-like 96.9 0.00043 9.3E-09 68.6 1.8 30 344-373 4-33 (243)
62 PF11723 Aromatic_hydrox: Homo 96.6 0.011 2.3E-07 58.4 9.4 35 336-372 21-55 (240)
63 KOG1336 Monodehydroascorbate/f 94.7 0.017 3.7E-07 62.2 2.2 38 261-298 1-39 (478)
64 PRK14127 cell division protein 83.7 3 6.5E-05 36.9 5.9 42 105-149 27-68 (109)
65 PRK00294 hscB co-chaperone Hsc 74.2 17 0.00038 34.5 8.3 92 69-163 52-162 (173)
66 PRK14161 heat shock protein Gr 70.1 22 0.00049 34.0 8.1 55 98-158 12-66 (178)
67 PF13118 DUF3972: Protein of u 69.2 14 0.0003 33.5 6.0 50 96-145 69-119 (126)
68 PF04977 DivIC: Septum formati 68.6 15 0.00033 29.3 5.8 52 115-166 14-65 (80)
69 PRK00888 ftsB cell division pr 68.2 16 0.00034 31.9 6.1 50 119-168 28-77 (105)
70 PRK03578 hscB co-chaperone Hsc 67.6 30 0.00064 33.0 8.3 40 71-110 56-111 (176)
71 TIGR02449 conserved hypothetic 63.7 33 0.00072 27.6 6.6 58 102-159 5-62 (65)
72 PF07820 TraC: TraC-like prote 63.3 42 0.00091 28.8 7.5 32 117-148 1-32 (92)
73 PF13334 DUF4094: Domain of un 60.9 6.2 0.00013 34.0 2.1 32 108-139 63-94 (95)
74 PF11559 ADIP: Afadin- and alp 60.6 56 0.0012 29.8 8.6 87 68-158 27-113 (151)
75 PRK14549 50S ribosomal protein 58.0 39 0.00084 27.3 6.2 46 118-163 12-62 (69)
76 PRK14156 heat shock protein Gr 57.9 47 0.001 31.8 7.7 55 103-158 20-74 (177)
77 PF11932 DUF3450: Protein of u 56.6 53 0.0012 32.6 8.3 28 229-256 178-207 (251)
78 COG1645 Uncharacterized Zn-fin 54.3 7.6 0.00017 35.4 1.7 29 255-286 27-55 (131)
79 PF06005 DUF904: Protein of un 54.1 63 0.0014 26.4 6.8 33 125-157 39-71 (72)
80 COG1938 Archaeal enzymes of AT 51.8 30 0.00064 34.8 5.5 49 102-150 188-236 (244)
81 PF05546 She9_MDM33: She9 / Md 49.1 54 0.0012 32.2 6.7 54 109-163 24-77 (207)
82 PRK09039 hypothetical protein; 48.7 76 0.0016 33.3 8.3 25 135-159 168-193 (343)
83 TIGR02209 ftsL_broad cell divi 48.5 52 0.0011 26.8 5.7 47 119-166 25-71 (85)
84 PF11572 DUF3234: Protein of u 47.8 8.2 0.00018 33.2 0.8 53 211-267 2-54 (103)
85 PRK04654 sec-independent trans 47.8 72 0.0016 31.4 7.3 58 98-156 35-92 (214)
86 COG1842 PspA Phage shock prote 47.5 90 0.0019 31.0 8.1 69 101-169 14-82 (225)
87 PF10392 COG5: Golgi transport 47.3 97 0.0021 27.8 7.7 68 69-143 26-104 (132)
88 PF07743 HSCB_C: HSCB C-termin 46.7 1.4E+02 0.0029 24.0 7.8 31 98-130 9-39 (78)
89 PF10186 Atg14: UV radiation r 46.5 1E+02 0.0023 30.5 8.7 42 116-157 54-95 (302)
90 cd00427 Ribosomal_L29_HIP Ribo 46.1 57 0.0012 25.1 5.2 28 118-145 6-33 (57)
91 PF03195 DUF260: Protein of un 46.0 23 0.00049 30.9 3.2 47 92-141 53-101 (101)
92 PF13094 CENP-Q: CENP-Q, a CEN 45.4 1.1E+02 0.0025 28.1 8.1 54 113-166 36-89 (160)
93 PRK11637 AmiB activator; Provi 45.2 82 0.0018 33.8 8.1 32 120-151 91-122 (428)
94 PF09740 DUF2043: Uncharacteri 44.8 12 0.00027 33.1 1.5 37 249-288 62-100 (110)
95 PRK09039 hypothetical protein; 44.1 86 0.0019 32.9 7.8 63 104-166 123-185 (343)
96 PF10080 DUF2318: Predicted me 43.5 1.2E+02 0.0027 26.4 7.4 67 240-319 19-91 (102)
97 PRK01773 hscB co-chaperone Hsc 42.4 1.3E+02 0.0027 28.7 8.0 87 72-162 53-160 (173)
98 PF05278 PEARLI-4: Arabidopsis 39.7 1.3E+02 0.0029 30.7 8.0 40 120-159 202-241 (269)
99 PF08606 Prp19: Prp19/Pso4-lik 38.1 37 0.0008 27.8 3.1 21 121-141 25-45 (70)
100 PF08317 Spc7: Spc7 kinetochor 37.1 1.1E+02 0.0023 31.8 7.2 37 121-157 226-262 (325)
101 PF06148 COG2: COG (conserved 36.1 66 0.0014 28.7 4.8 47 112-158 63-109 (133)
102 PF09538 FYDLN_acid: Protein o 35.8 20 0.00044 31.5 1.4 31 256-288 9-39 (108)
103 PF05377 FlaC_arch: Flagella a 34.8 52 0.0011 25.7 3.3 32 108-139 4-35 (55)
104 PRK00420 hypothetical protein; 34.1 30 0.00064 30.8 2.2 31 255-287 22-52 (112)
105 KOG0980 Actin-binding protein 33.7 1.3E+02 0.0028 35.5 7.6 81 69-157 445-533 (980)
106 PF07282 OrfB_Zn_ribbon: Putat 33.6 33 0.00071 27.0 2.2 33 255-288 27-59 (69)
107 PRK13723 conjugal transfer pil 33.4 1.6E+02 0.0034 32.4 7.9 43 124-166 390-439 (451)
108 TIGR00219 mreC rod shape-deter 33.2 97 0.0021 31.7 6.0 54 104-157 52-105 (283)
109 PRK13848 conjugal transfer pro 32.6 1.3E+02 0.0028 26.1 5.5 24 118-141 3-26 (98)
110 TIGR02977 phageshock_pspA phag 32.4 2.2E+02 0.0048 27.7 8.2 67 101-168 14-81 (219)
111 COG3027 zapA Cell division pro 32.4 85 0.0018 27.5 4.7 33 126-158 62-98 (105)
112 PF10498 IFT57: Intra-flagella 32.4 1.5E+02 0.0032 31.5 7.4 15 81-97 211-225 (359)
113 COG0497 RecN ATPase involved i 32.3 1.2E+02 0.0026 34.1 6.9 59 98-156 322-380 (557)
114 PF13863 DUF4200: Domain of un 31.8 2.1E+02 0.0045 24.9 7.2 54 98-151 54-107 (126)
115 PF07730 HisKA_3: Histidine ki 31.8 85 0.0018 24.0 4.3 17 101-117 8-24 (68)
116 COG1096 Predicted RNA-binding 31.7 1E+02 0.0022 29.9 5.4 57 224-284 116-174 (188)
117 PRK14147 heat shock protein Gr 31.4 1.6E+02 0.0035 28.0 6.8 39 120-158 27-65 (172)
118 smart00549 TAFH TAF homology. 30.8 84 0.0018 27.0 4.2 39 98-137 41-79 (92)
119 PRK06342 transcription elongat 30.5 80 0.0017 29.6 4.5 40 120-159 36-77 (160)
120 PRK00461 rpmC 50S ribosomal pr 30.3 1.8E+02 0.0039 24.7 6.2 51 118-168 8-62 (87)
121 PF08537 NBP1: Fungal Nap bind 29.7 1.4E+02 0.0029 31.4 6.3 46 119-164 176-221 (323)
122 PF11471 Sugarporin_N: Maltopo 29.6 1E+02 0.0023 24.3 4.3 32 120-151 27-58 (60)
123 PF06698 DUF1192: Protein of u 29.5 1.3E+02 0.0029 23.7 4.9 26 117-142 20-45 (59)
124 PF05837 CENP-H: Centromere pr 29.4 1.9E+02 0.0041 25.1 6.4 52 93-144 23-77 (106)
125 PRK14164 heat shock protein Gr 28.6 1.8E+02 0.0039 28.8 6.8 42 117-158 76-117 (218)
126 PF04380 BMFP: Membrane fusoge 28.3 1E+02 0.0022 25.5 4.3 27 124-150 49-75 (79)
127 PF00831 Ribosomal_L29: Riboso 28.2 1.7E+02 0.0037 22.6 5.3 27 118-144 7-33 (58)
128 PF14257 DUF4349: Domain of un 27.4 1.6E+02 0.0036 29.2 6.5 43 107-149 148-193 (262)
129 PF12325 TMF_TATA_bd: TATA ele 27.3 4.3E+02 0.0094 23.7 8.4 46 119-164 69-114 (120)
130 PF13815 Dzip-like_N: Iguana/D 27.0 74 0.0016 28.1 3.5 32 120-151 75-106 (118)
131 PF00261 Tropomyosin: Tropomyo 26.9 1.5E+02 0.0032 29.3 5.9 75 73-149 117-200 (237)
132 PRK00306 50S ribosomal protein 26.5 2.4E+02 0.0052 22.4 6.0 27 117-143 8-34 (66)
133 PF07439 DUF1515: Protein of u 26.3 2.2E+02 0.0047 25.3 6.1 17 142-158 50-66 (112)
134 PRK05014 hscB co-chaperone Hsc 26.1 3E+02 0.0066 25.9 7.7 41 70-110 50-106 (171)
135 PF12761 End3: Actin cytoskele 26.0 65 0.0014 31.4 3.1 22 122-143 100-121 (195)
136 PF04012 PspA_IM30: PspA/IM30 25.9 3.3E+02 0.0071 26.2 8.1 66 101-166 13-78 (221)
137 KOG1594 Uncharacterized enzyme 25.9 85 0.0018 32.2 4.0 58 17-74 60-118 (305)
138 PF07321 YscO: Type III secret 25.9 1.8E+02 0.0039 27.2 5.9 70 86-156 43-112 (152)
139 PRK14139 heat shock protein Gr 25.8 2.3E+02 0.0049 27.4 6.8 39 120-158 41-79 (185)
140 PRK14157 heat shock protein Gr 25.8 2.2E+02 0.0047 28.5 6.8 39 120-158 86-124 (227)
141 PRK14155 heat shock protein Gr 25.6 2.2E+02 0.0048 28.0 6.8 39 120-158 22-60 (208)
142 smart00787 Spc7 Spc7 kinetocho 25.5 1.9E+02 0.004 30.2 6.6 11 77-87 152-162 (312)
143 PF07531 TAFH: NHR1 homology t 25.5 1E+02 0.0022 26.8 3.8 40 98-138 42-81 (96)
144 PRK01356 hscB co-chaperone Hsc 25.5 2.8E+02 0.006 26.1 7.2 86 71-163 50-156 (166)
145 PRK11637 AmiB activator; Provi 25.5 2.6E+02 0.0057 29.9 8.0 55 105-159 69-123 (428)
146 PF11853 DUF3373: Protein of u 25.3 41 0.0009 37.1 1.8 22 120-141 33-54 (489)
147 PRK14151 heat shock protein Gr 25.0 2.4E+02 0.0053 26.9 6.8 39 120-158 29-67 (176)
148 PF15456 Uds1: Up-regulated Du 25.0 1.8E+02 0.0038 26.3 5.5 38 120-158 24-61 (124)
149 PF10234 Cluap1: Clusterin-ass 24.8 2E+02 0.0043 29.4 6.5 53 104-157 169-221 (267)
150 KOG2483 Upstream transcription 24.6 1.6E+02 0.0035 29.5 5.6 63 76-138 76-139 (232)
151 PF08182 Pedibin: Pedibin/Hym- 24.5 1E+02 0.0022 21.8 3.0 25 123-147 2-26 (35)
152 COG3551 Uncharacterized protei 24.4 2.4E+02 0.0053 29.6 7.0 75 74-151 252-328 (402)
153 PF15290 Syntaphilin: Golgi-lo 24.4 3.3E+02 0.0071 28.2 7.8 67 65-149 53-125 (305)
154 PF05529 Bap31: B-cell recepto 24.2 57 0.0012 31.0 2.4 22 121-142 157-178 (192)
155 PF07889 DUF1664: Protein of u 24.0 1.8E+02 0.0038 26.4 5.3 40 120-159 84-123 (126)
156 PRK14162 heat shock protein Gr 23.9 2.2E+02 0.0047 27.7 6.3 39 120-158 48-86 (194)
157 PF00261 Tropomyosin: Tropomyo 23.8 2.4E+02 0.0052 27.8 6.8 60 101-160 117-176 (237)
158 PRK14163 heat shock protein Gr 23.5 2.4E+02 0.0053 27.8 6.6 39 120-158 49-87 (214)
159 PF07028 DUF1319: Protein of u 23.4 1.8E+02 0.0038 26.5 5.1 24 83-106 4-39 (126)
160 TIGR02977 phageshock_pspA phag 23.2 2.4E+02 0.0052 27.5 6.6 31 117-147 112-142 (219)
161 PF15155 MRFAP1: MORF4 family- 23.1 93 0.002 27.6 3.2 49 104-162 12-64 (127)
162 PF10186 Atg14: UV radiation r 23.0 4E+02 0.0087 26.3 8.4 43 99-141 65-107 (302)
163 PRK10698 phage shock protein P 22.7 4.4E+02 0.0095 25.9 8.3 65 101-166 14-79 (222)
164 COG5570 Uncharacterized small 22.7 1.1E+02 0.0025 23.6 3.2 42 101-142 16-57 (57)
165 PRK09915 putative outer membra 22.6 1.4E+02 0.0031 32.2 5.4 43 107-149 184-226 (488)
166 PF10458 Val_tRNA-synt_C: Valy 22.3 1.2E+02 0.0027 23.9 3.6 27 123-149 2-28 (66)
167 PRK14154 heat shock protein Gr 22.2 2.9E+02 0.0062 27.3 6.8 39 120-158 61-99 (208)
168 PF06273 eIF-4B: Plant specifi 22.1 3E+02 0.0065 30.5 7.5 30 107-139 358-387 (492)
169 PF07794 DUF1633: Protein of u 22.1 1E+02 0.0022 34.2 3.9 39 120-158 599-637 (790)
170 COG3074 Uncharacterized protei 21.8 2.9E+02 0.0062 22.8 5.5 40 103-142 10-49 (79)
171 PRK14146 heat shock protein Gr 21.7 2.9E+02 0.0063 27.3 6.8 39 120-158 63-101 (215)
172 PRK14159 heat shock protein Gr 21.6 2.8E+02 0.006 26.5 6.5 41 118-158 30-70 (176)
173 PRK14141 heat shock protein Gr 21.6 3E+02 0.0065 27.1 6.8 39 120-158 40-78 (209)
174 KOG4403 Cell surface glycoprot 21.5 1.9E+02 0.0041 31.6 5.7 66 76-141 196-275 (575)
175 COG3879 Uncharacterized protei 21.5 1.8E+02 0.0038 29.4 5.3 31 122-152 54-84 (247)
176 KOG0994 Extracellular matrix g 21.4 2.5E+02 0.0054 34.5 7.0 75 99-173 1561-1643(1758)
177 PF10168 Nup88: Nuclear pore c 21.3 2.5E+02 0.0053 32.7 7.1 10 74-83 541-550 (717)
178 PF14446 Prok-RING_1: Prokaryo 21.1 40 0.00087 26.2 0.6 25 272-296 18-47 (54)
179 PF11464 Rbsn: Rabenosyn Rab b 21.1 91 0.002 23.1 2.3 23 114-136 18-40 (42)
180 PRK14149 heat shock protein Gr 20.9 3.2E+02 0.007 26.5 6.8 39 120-158 45-83 (191)
181 PF07363 DUF1484: Protein of u 20.9 4.1E+02 0.0089 23.7 6.8 63 96-158 8-74 (110)
182 PF13600 DUF4140: N-terminal d 20.7 1.8E+02 0.0038 24.6 4.5 29 120-148 72-100 (104)
183 PF09304 Cortex-I_coil: Cortex 20.5 4.3E+02 0.0093 23.4 6.8 37 122-158 41-77 (107)
184 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.5 5.2E+02 0.011 23.1 7.7 49 101-149 42-90 (132)
185 PF15186 TEX13: Testis-express 20.2 4.4E+02 0.0096 24.7 7.1 64 101-168 81-149 (152)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=2.6e-128 Score=1022.82 Aligned_cols=479 Identities=76% Similarity=1.297 Sum_probs=431.4
Q ss_pred Cc-ccccccccccccccc--cccccccccccccceEEEEEecCCCccccccCcceeeeeecCCCCCCCccCCceeehhhH
Q 011656 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (480)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (480)
|| +++|+|+||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 77 499999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
|||+||||||||||||||+||||.||+||||||||||||+|||||||||||||||||+|||+|||+||+||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCc-ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCCCCCeEEEE
Q 011656 158 MEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFD 236 (480)
Q Consensus 158 ~e~~~r~~~l~~~~a~~~-~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~~g~~~~v~ 236 (480)
||.++|+|||++++.+++ .|.+..++++ ...+.+..+..++++++++++.||..++++.||+||.++||++|+++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~ 239 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASA-VELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIE 239 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcc-hhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEE
Confidence 999999999998766644 6766666655 55677888888999999999999999999999999999999989999999
Q ss_pred EcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCccccccccccCCeeeecCcE
Q 011656 237 CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMI 316 (480)
Q Consensus 237 l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~V 316 (480)
++|++|+|||+.+|+++|+.|+|||||++|+.|+++++.|+||||||+||.+|+|+.+|+.+..+.++++|||+|++|+|
T Consensus 240 llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV 319 (536)
T PLN02281 240 CFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMI 319 (536)
T ss_pred ECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999876556889999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceeeeecCCCCCCCcc
Q 011656 317 WIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYW 396 (480)
Q Consensus 317 wV~~g~~~p~~~lp~~~~~~~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~~~~~p~~~~~~~p~~~~~g~~ 396 (480)
|||++++++.+.+|.+..+.++.......+++++||++++||++|+||++|+|+++++..+..|..+....+...+.++|
T Consensus 320 wV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~ 399 (536)
T PLN02281 320 WIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYW 399 (536)
T ss_pred EEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCccc
Confidence 99998765544556665444666655567899999999999999999999999999998776666665555444555666
Q ss_pred cCCceeeEEeCceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchhhcCCcccHHHHHHHH
Q 011656 397 DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHF 476 (480)
Q Consensus 397 ~~~~~~~~f~~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~~l~~lp~i~~~~~~~ 476 (480)
...+..++|.+||++.+.+++..+|...+......+.+++.+|+|||+|+++|||||.+.|||.++++..++..+||.++
T Consensus 400 ~~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~ 479 (536)
T PLN02281 400 DPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHF 479 (536)
T ss_pred ccCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHH
Confidence 55455789999999999999988876554445555667888999999999999999999999999988888889988887
Q ss_pred HhcC
Q 011656 477 AEQV 480 (480)
Q Consensus 477 ~~~~ 480 (480)
..+|
T Consensus 480 ~~~v 483 (536)
T PLN02281 480 AEQV 483 (536)
T ss_pred hhHh
Confidence 6553
No 2
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=5.8e-51 Score=417.32 Aligned_cols=264 Identities=37% Similarity=0.772 Sum_probs=220.9
Q ss_pred cccccccCceEEeeecCCC-CCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC
Q 011656 209 PYNTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (480)
Q Consensus 209 ~~~~~~~~~W~~V~~~~eL-~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~ 287 (480)
......++.||+||+++|| ++|+++.++++|++++|||+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.
T Consensus 64 ~~~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~ 143 (394)
T PLN00095 64 GATADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYET 143 (394)
T ss_pred CCCCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECC
Confidence 3345568999999999999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCccc--cccccccCCeeeecCcEEEcCCCCCCCC------------------CCCC-CCCCCCceEeeEEEE
Q 011656 288 DGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVM 346 (480)
Q Consensus 288 dG~c~~iP~~~~--~~~~L~~~pv~e~~G~VwV~~g~~~p~~------------------~lp~-~~~~~~~~~~~~~~~ 346 (480)
+|+|+.+|+.+. .+.++++|||++++|+||||+|+..+.. ..|. +.++++|..+.+...
T Consensus 144 ~G~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~ 223 (394)
T PLN00095 144 GGECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIA 223 (394)
T ss_pred CCCEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEE
Confidence 999999997532 2467899999999999999998654431 2333 344568888777778
Q ss_pred EEecchhhHhhhcCCCCC-CCCCCccccc----cCC---CCCceeeeecCCCCCCCcccCCceeeEEeCceeEEEEeeec
Q 011656 347 ELPIEHGLLLDNLLDLAH-APFTHTSTFA----KGW---SVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGIS 418 (480)
Q Consensus 347 ~~~~Nwk~~iEN~lD~yH-~~~vH~~t~~----~~~---~~p~~~~~~~p~~~~~g~~~~~~~~~~f~~P~~~~~~~~~~ 418 (480)
|+++.|.+++||+||++| .+|+|+.||. +.. ..|.... .....++++.|++++++|+|.+||++.++|++.
T Consensus 224 Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~ 302 (394)
T PLN00095 224 DIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALE 302 (394)
T ss_pred eccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeeccc
Confidence 999999999999999999 6999998885 211 1221111 122446788999999999999999999999997
Q ss_pred C-CCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchh---hcCCcccHHHHHHHHHhcC
Q 011656 419 K-PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQV 480 (480)
Q Consensus 419 ~-~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~---~l~~lp~i~~~~~~~~~~~ 480 (480)
+ +|+.. .|..+++++|+|.|.++++||++++|++||.. |.+++|. .+|+|++.||
T Consensus 303 ~~~g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~v 361 (394)
T PLN00095 303 DGPGGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMV 361 (394)
T ss_pred ccCCCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHH
Confidence 5 55433 24568999999999999999999999999987 8887766 9999999987
No 3
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=2.5e-44 Score=387.15 Aligned_cols=260 Identities=22% Similarity=0.436 Sum_probs=196.2
Q ss_pred cccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEc-CCCcEEEeecCCCCCCCCCCCCccc-CCeEeccccceEEc
Q 011656 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYS 286 (480)
Q Consensus 209 ~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~-~dG~v~A~~n~CpHRGapLs~G~v~-~~~l~CPYHGW~Fd 286 (480)
.....+++.||+||.++||++|++..++++|++|||||+ .+|+++|+.|+|||||++|+.|+++ ++.|+||||||+||
T Consensus 82 ~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd 161 (539)
T PLN02518 82 DSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 161 (539)
T ss_pred chhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEc
Confidence 334578999999999999988999999999999999998 8999999999999999999999985 67999999999999
Q ss_pred CCCCcccCCCccc----------cccccccCCeeeecCcEEEcCCCCC----CCCCCCCCC---CCCCceEeeEEEEEEe
Q 011656 287 TDGKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELP 349 (480)
Q Consensus 287 ~dG~c~~iP~~~~----------~~~~L~~~pv~e~~G~VwV~~g~~~----p~~~lp~~~---~~~~~~~~~~~~~~~~ 349 (480)
.+|+|+.+|+... ...++++|||+|++|+||||++++. +...+|.+. +..+|... ....+++
T Consensus 162 ~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~ 240 (539)
T PLN02518 162 GCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLF 240 (539)
T ss_pred CCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEe
Confidence 9999999997421 2357999999999999999998652 122344332 23445433 2356899
Q ss_pred cchhhHhhhcCCCCCCCCCCccccccCCC-CC--ceeeeecCCCCCCCccc-CCceeeEEeCceeEEEEeeecCCCCcCC
Q 011656 350 IEHGLLLDNLLDLAHAPFTHTSTFAKGWS-VP--SLVKFLTPASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEG 425 (480)
Q Consensus 350 ~Nwk~~iEN~lD~yH~~~vH~~t~~~~~~-~p--~~~~~~~p~~~~~g~~~-~~~~~~~f~~P~~~~~~~~~~~~g~~~g 425 (480)
++|++++||++|++|++|+|++++|.... .+ ..+.... ..++.+.+. .....++|.+||++...+++.. +. ..
T Consensus 241 ~~~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~-~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~-~~-~~ 317 (539)
T PLN02518 241 YGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSG-PWGFAGANSDNPRITAKFVAPCYYINKIEIDT-KL-PI 317 (539)
T ss_pred cCchhHHHhCCccchhceeccccccCccccccccceEEEcC-CCcccccccCCCceEEEEECCeEEEEeeeeec-cc-cC
Confidence 99999999999999999999999987531 22 1222111 123433332 2334688999998887776641 11 01
Q ss_pred CCccccceeEEEEEEEEeCCCCcEEEEEEeecCch-------hhcCCcccHHHHHHHHH
Q 011656 426 QNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFA-------SVLKHVPFMQYLWRHFA 477 (480)
Q Consensus 426 ~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~-------~~l~~lp~i~~~~~~~~ 477 (480)
.......+++++++||+++++||+||.+.|||. .|+ + ++|+||.|+.
T Consensus 318 --~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~-k--~~PrW~~h~~ 371 (539)
T PLN02518 318 --VGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWW-Q--LVPRWYEHWT 371 (539)
T ss_pred --CCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhh-h--cCchHHHHhh
Confidence 111223466788999999999999999999994 344 3 3788887764
No 4
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=6e-37 Score=323.45 Aligned_cols=180 Identities=19% Similarity=0.311 Sum_probs=154.5
Q ss_pred cccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEe
Q 011656 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (480)
Q Consensus 177 ~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~ 255 (480)
.++.+.++|+++|+.|+++||. +.|++||+++||+ +|+++++.+++++|||+|+.||+++||
T Consensus 15 ~v~~~~ytd~~if~~E~~~IF~-----------------~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~ 77 (438)
T TIGR03228 15 RIARDMFTEPELFDLEMELIFE-----------------KNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHAL 77 (438)
T ss_pred ecChheECCHHHHHHHHHHHHh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEE
Confidence 5778899999999999999975 5999999999998 699999999999999999999999999
Q ss_pred ecCCCCCCCCCCC-CcccCCeEeccccceEEcCCCCcccCCCcc-------ccccccccCCeeeecCcEEEcCCCCCCCC
Q 011656 256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTA 327 (480)
Q Consensus 256 ~n~CpHRGapLs~-G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~-------~~~~~L~~~pv~e~~G~VwV~~g~~~p~~ 327 (480)
.|+|||||++|+. +.++.+.|+||||||+|+.||+|+++|... +...+|++++|.+++|+||++++++++ .
T Consensus 78 ~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~ 156 (438)
T TIGR03228 78 VNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-D 156 (438)
T ss_pred cccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-C
Confidence 9999999999997 788888999999999999999999998532 135778899999999999999987642 2
Q ss_pred CCCCCCCC--------------CCceEe-eEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 328 TIPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 328 ~lp~~~~~--------------~~~~~~-~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
++++++++ .++++. +...+.++||||+.+||++|.||++++|.++++
T Consensus 157 ~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 157 SLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 35554421 124443 345688999999999999999999999988764
No 5
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=313.08 Aligned_cols=183 Identities=29% Similarity=0.557 Sum_probs=152.6
Q ss_pred cccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEee
Q 011656 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (480)
Q Consensus 177 ~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~ 256 (480)
..+...++|+.+|+.+...++. +.||+||+++||++++++++.++|+++||+|+.||+++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~ 66 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIFY-----------------KHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALA 66 (367)
T ss_pred cCCCccccCHHHHHHHHHHhhh-----------------hCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEe
Confidence 3556778999999999888763 49999999999998899999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccC-CeEeccccceEEcCCCCcccCCC--cc----ccccccccCCeeeecCcEEEcCCCCCCC-C-
Q 011656 257 NTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPT-A- 327 (480)
Q Consensus 257 n~CpHRGapLs~G~v~~-~~l~CPYHGW~Fd~dG~c~~iP~--~~----~~~~~L~~~pv~e~~G~VwV~~g~~~p~-~- 327 (480)
|.|||||++|+.|++.+ +.|+||||||+||.+|+|+.+|. .. ..+.++++||+++++|+||||+++++++ .
T Consensus 67 d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~ 146 (367)
T COG4638 67 DVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEA 146 (367)
T ss_pred ccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhH
Confidence 99999999999999988 89999999999999999999993 22 1236899999999999999999987643 1
Q ss_pred -CCCCCC-CCCCceEe-eEEEEEEecchhhHhhhcCC-CCCCCCCCccccccC
Q 011656 328 -TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKG 376 (480)
Q Consensus 328 -~lp~~~-~~~~~~~~-~~~~~~~~~Nwk~~iEN~lD-~yH~~~vH~~t~~~~ 376 (480)
..|... ....+... +.....+++|||+++||++| +||++++|+++++..
T Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~ 199 (367)
T COG4638 147 FLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTE 199 (367)
T ss_pred hcccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhccc
Confidence 112222 22223222 45567899999999998887 999999999887654
No 6
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=2.9e-35 Score=310.65 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=151.3
Q ss_pred cccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEe
Q 011656 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (480)
Q Consensus 177 ~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~ 255 (480)
.++...++|+++|+.|++++|. +.|+.||+++||+ +|+++++.++|++|+|+|+.+|+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF~-----------------~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIFE-----------------GNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHhh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 5788899999999999999985 4899999999998 789999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCc-ccCCeEeccccceEEcCCCCcccCCCccc----------cccccccCC-eeeecCcEEEcCCCC
Q 011656 256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDE 323 (480)
Q Consensus 256 ~n~CpHRGapLs~G~-v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~----------~~~~L~~~p-v~e~~G~VwV~~g~~ 323 (480)
.|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... ...+|++++ ++.+.|+|||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999874 55679999999999999999999987321 146799996 566789999999876
Q ss_pred CCCCCCCCCCCC-------------CCceEe-eEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 324 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 324 ~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
++ ++++++++ .++... +...++++||||+++||++|.||++++|.+++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 54 45554432 233333 345788999999999999999999999987654
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=1.1e-30 Score=234.18 Aligned_cols=122 Identities=65% Similarity=1.383 Sum_probs=113.3
Q ss_pred cCCCCcccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccce
Q 011656 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283 (480)
Q Consensus 204 ~~~~~~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW 283 (480)
.++..++...+++.|++|+.++||++|+++.++++|++++|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||
T Consensus 4 ~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw 83 (129)
T cd04337 4 LGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGW 83 (129)
T ss_pred cccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCC
Confidence 46778889999999999999999999999999999999999999899999999999999999999999899999999999
Q ss_pred EEcCCCCcccCCCccccccccccCCeeeecCcEEEcCCCCCC
Q 011656 284 EYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 284 ~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
+||.+|+|+.+|..+....+|++||+++++|+||||+++++|
T Consensus 84 ~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 84 EYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred EECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 999999999999765445689999999999999999987654
No 8
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.97 E-value=2.7e-30 Score=235.61 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=118.0
Q ss_pred ccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEecc
Q 011656 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 279 (480)
Q Consensus 201 ~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CP 279 (480)
+..+++++++...+++.|++|+.+++|+ +|+++.+.++|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 4567999999999999999999999999 799999999999999999999999999999999999999999988999999
Q ss_pred ccceEEcCCCCcccCCCccc-----cccccccCCeeeecCcEEEcCCCCCCCCCCCCC
Q 011656 280 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332 (480)
Q Consensus 280 YHGW~Fd~dG~c~~iP~~~~-----~~~~L~~~pv~e~~G~VwV~~g~~~p~~~lp~~ 332 (480)
||||+||.+|+|+.+|+.+. ...+|++|+|++++|+|||++++..+++++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 246799999999999999999864433345543
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.96 E-value=6.4e-30 Score=227.64 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=100.1
Q ss_pred CceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCC
Q 011656 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 216 ~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
+.||+|+.++||+ ++++.++++|+++||+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 4799999999996 678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred Cccc---------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
..+. ...++++|||+|++|+||||++++.|
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7431 24689999999999999999987655
No 10
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=1.8e-29 Score=227.60 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=105.0
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCC
Q 011656 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (480)
Q Consensus 211 ~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~ 290 (480)
...+++.|++|+.++||++|..+.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 45678999999999999988889999999999999998999999999999999999999999999999999999999999
Q ss_pred cccCCCccc-----cccccccCCeeeecCcEEEcCCCCCC
Q 011656 291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 291 c~~iP~~~~-----~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
|+.+|..+. ...+|++|||++++|+|||++++.+|
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999987531 23669999999999999999987654
No 11
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.96 E-value=1.4e-29 Score=232.72 Aligned_cols=132 Identities=21% Similarity=0.361 Sum_probs=117.6
Q ss_pred ccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEee
Q 011656 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (480)
Q Consensus 178 ~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~ 256 (480)
++++.++|++.|+.|++++|+ .+.|++||++++|+ +|+++++.++|++|+|+|+.+|+++|+.
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~ 65 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWV 65 (150)
T ss_pred CChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEc
Confidence 467889999999999999874 25999999999998 6999999999999999999899999999
Q ss_pred cCCCCCCCCCCCCc-ccCCeEeccccceEEcCCCCcccCCCcc-------------ccccccccCCeeeecCcEEEcCCC
Q 011656 257 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGD 322 (480)
Q Consensus 257 n~CpHRGapLs~G~-v~~~~l~CPYHGW~Fd~dG~c~~iP~~~-------------~~~~~L~~~pv~e~~G~VwV~~g~ 322 (480)
|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|..+ ..+.+|++|+|++++|+|||++++
T Consensus 66 n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 66 NRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 99999999999874 4568999999999999999999999642 124689999999999999999987
Q ss_pred CCC
Q 011656 323 EPP 325 (480)
Q Consensus 323 ~~p 325 (480)
+++
T Consensus 146 ~~~ 148 (150)
T cd03545 146 EVE 148 (150)
T ss_pred CCC
Confidence 644
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=1.8e-28 Score=215.47 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.1
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~ 296 (480)
.|++|+.++||++|+++.++++|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--cccccccCCeeeecCcEEEcCCCCCC
Q 011656 297 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 297 ~~~--~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
.+. ...++++||+++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24679999999999999999987643
No 13
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=2.6e-28 Score=221.20 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.2
Q ss_pred cccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcC-CCcEEEeecCCCCCCCCCCCCccc-CCeEeccccceEEcCCCC
Q 011656 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 290 (480)
Q Consensus 213 ~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~-dG~v~A~~n~CpHRGapLs~G~v~-~~~l~CPYHGW~Fd~dG~ 290 (480)
.+++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 468899999999999999999999999999999986 999999999999999999999875 479999999999999999
Q ss_pred cccCCCccc-------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 291 c~~iP~~~~-------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997532 23679999999999999999987543
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=4e-28 Score=213.30 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=101.8
Q ss_pred ccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCccc
Q 011656 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293 (480)
Q Consensus 214 ~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~ 293 (480)
+++.|++||.++||+ |+++.+.+.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 8899999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCcc--ccccccccCCeeeecCcEEEcCCCCC
Q 011656 294 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 324 (480)
Q Consensus 294 iP~~~--~~~~~L~~~pv~e~~G~VwV~~g~~~ 324 (480)
+|... ....+|++|||++++|+|||++++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99754 23468999999999999999998653
No 15
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=2.3e-27 Score=214.30 Aligned_cols=110 Identities=32% Similarity=0.652 Sum_probs=98.7
Q ss_pred cccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCc--ccCCeEeccccceEEcC-CC
Q 011656 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 289 (480)
Q Consensus 213 ~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~--v~~~~l~CPYHGW~Fd~-dG 289 (480)
.+++.|++|+.++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||. +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 6789999999999999999999999999999999 69999999999999999999885 45789999999999995 99
Q ss_pred CcccCCCccc----cccccccCCeeeecCcEEEcCCCC
Q 011656 290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 290 ~c~~iP~~~~----~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
+|+.+|..+. ...+|++|||++++|+|||++++.
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~ 126 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDG 126 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCc
Confidence 9998765432 146799999999999999999864
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.95 E-value=1.7e-27 Score=210.55 Aligned_cols=107 Identities=25% Similarity=0.421 Sum_probs=99.5
Q ss_pred ceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCC
Q 011656 217 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 217 ~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
.|++||+++||+ +|++++++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 6889999999999999999999999999999999999999999989999999999999999999999
Q ss_pred Cccc------cccccccCCeeeecCcEEEcCCCC
Q 011656 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
.... ...+|++++|++++|+|||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 7542 357899999999999999999764
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=2e-27 Score=213.14 Aligned_cols=108 Identities=22% Similarity=0.416 Sum_probs=97.2
Q ss_pred eEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCC
Q 011656 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 218 W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
|++||+++||+ +|++.++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 6999999999999999999999999999999999999998764 456899999999999999999999
Q ss_pred Ccc-----------------ccccccccCCeeeecCcEEEcCCCCCC
Q 011656 296 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 296 ~~~-----------------~~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
..+ ..+.+|++++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124689999999999999999987654
No 18
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.94 E-value=3.2e-27 Score=216.08 Aligned_cols=128 Identities=20% Similarity=0.369 Sum_probs=112.3
Q ss_pred CCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEeecCC
Q 011656 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC 259 (480)
Q Consensus 181 ~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~C 259 (480)
..++|+++|+.|+++++. +.|++||+.+||+ +|+++++.++|++|+|+|+.+|+++|+.|+|
T Consensus 3 ~~y~~~~~~~~e~~~i~~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~C 65 (146)
T cd03538 3 DVYTDPEIFALEMERLFG-----------------NAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRC 65 (146)
T ss_pred ceEcCHHHHHHHHHHHhh-----------------cCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccC
Confidence 468999999999999874 5899999999998 7999999999999999999899999999999
Q ss_pred CCCCCCCCCC-ccc-CCeEeccccceEEcCCCCcccCCCccc----------cccccccC-CeeeecCcEEEcCCCCCC
Q 011656 260 AHRACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 260 pHRGapLs~G-~v~-~~~l~CPYHGW~Fd~dG~c~~iP~~~~----------~~~~L~~~-pv~e~~G~VwV~~g~~~p 325 (480)
||||++|+.+ .+. ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|++++|+|||++++++|
T Consensus 66 pHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 66 PHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred cCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 9999999754 343 568999999999999999999997441 24689999 688999999999987643
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=8.7e-27 Score=208.78 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=100.2
Q ss_pred ccccCceEEeeecCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCC
Q 011656 212 TRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDG 289 (480)
Q Consensus 212 ~~~~~~W~~V~~~~eL~~-g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG 289 (480)
..+.+.|+.||+++||++ |++..+.+++++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+|
T Consensus 3 ~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G 82 (128)
T cd03472 3 RVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAG 82 (128)
T ss_pred chhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCc
Confidence 346789999999999984 777888899999999999999999999999999999999864 446899999999999999
Q ss_pred CcccCCCccc--------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 290 KCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 290 ~c~~iP~~~~--------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
+|+.+|..+. ...+|++++|.++.|+|||++++++|
T Consensus 83 ~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 83 NLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred CEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 9999998542 13569999999999999999987654
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=1.3e-26 Score=202.69 Aligned_cols=108 Identities=33% Similarity=0.686 Sum_probs=99.6
Q ss_pred eEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCC
Q 011656 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 218 W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
|++||.++||+ +|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 9999999999999999998899999999999999999999988 789999999999999999999999
Q ss_pred Cccc------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
+... ...+|++||+++++|+|||+++++.+
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~ 116 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence 8542 24679999999999999999987543
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=6.3e-26 Score=201.61 Aligned_cols=110 Identities=21% Similarity=0.486 Sum_probs=96.3
Q ss_pred CceEEeeecCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccC-CeEeccccceEEcCCCCccc
Q 011656 216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 293 (480)
Q Consensus 216 ~~W~~V~~~~eL~~-g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~-~~l~CPYHGW~Fd~dG~c~~ 293 (480)
+.|++||+++||++ |++..+.+++++++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 47999999999985 78888889999999999989999999999999999999987664 68999999999999999999
Q ss_pred CCCccc--------cccccccCCe-eeecCcEEEcCCCCCC
Q 011656 294 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP 325 (480)
Q Consensus 294 iP~~~~--------~~~~L~~~pv-~e~~G~VwV~~g~~~p 325 (480)
+|..+. ...+|++||+ ++++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 2468999986 5589999999987543
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=1e-25 Score=200.21 Aligned_cols=108 Identities=19% Similarity=0.362 Sum_probs=95.9
Q ss_pred eEEeeecCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccC-CeEeccccceEEcCCCCcccCC
Q 011656 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 218 W~~V~~~~eL~~-g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~-~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
|+.||+++||++ |++..+.+.|.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999985 78888899999999999889999999999999999999876543 5799999999999999999999
Q ss_pred Cccc---------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
..+. ...+|++|+|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7532 23679999999999999999987543
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.91 E-value=1.2e-24 Score=193.73 Aligned_cols=108 Identities=24% Similarity=0.468 Sum_probs=94.0
Q ss_pred eEEeeecCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCC
Q 011656 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (480)
Q Consensus 218 W~~V~~~~eL~~-g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP 295 (480)
|+.||+.+||++ |+++.+.+.|++++|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999984 888999999999999999999999999999999999998754 456999999999999999999998
Q ss_pred Cccc----------cccccccCC-eeeecCcEEEcCCCCCC
Q 011656 296 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 296 ~~~~----------~~~~L~~~p-v~e~~G~VwV~~g~~~p 325 (480)
.... ...+|++++ ++.++|+||+++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 136788886 55678999999987654
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=1.3e-24 Score=184.30 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.6
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCCC
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP~ 296 (480)
|++++.++||++|+++.+.+.|.+++|+|+ +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999999999999999999999997 669999999999999999999888899999999999996 999999987
Q ss_pred ccccccccccCCeeeecCcEEE
Q 011656 297 TQLRNVKIKSLPCFEQEGMIWI 318 (480)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~VwV 318 (480)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 3 47999999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=3.6e-24 Score=182.07 Aligned_cols=97 Identities=21% Similarity=0.463 Sum_probs=89.1
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCCC
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP~ 296 (480)
|+.|+.++||++|+.+.+.+.|++++|+|+.+|+++|+.|.|||+|++|+.|.+.++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999999999999999999988899999999999999999999998899999999999995 888764 43
Q ss_pred ccccccccccCCeeeecCcEEEc
Q 011656 297 TQLRNVKIKSLPCFEQEGMIWIW 319 (480)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~VwV~ 319 (480)
..+|++||+++++|.|||.
T Consensus 80 ----~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 ----EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred ----CCccceEeEEEECCEEEEC
Confidence 2479999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.91 E-value=6.3e-24 Score=183.81 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.0
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCCC
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP~ 296 (480)
|++||..+||++|+++.+.+.|.+++++|..+|+++|+.|+|||+|++|+.|..+++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8999999999999999999999999999989999999999999999999999988889999999999995 666654 32
Q ss_pred ccccccccccCCeeeecCcEEEcCCCCCC
Q 011656 297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
..+|++|||++++|.|||++...++
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 3579999999999999999875443
No 27
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.89 E-value=2.8e-23 Score=178.67 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=87.7
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCC-CCCCccc----CCeEeccccceEEc-CCCCc
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 291 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGap-Ls~G~v~----~~~l~CPYHGW~Fd-~dG~c 291 (480)
|++||.++||++|+.+.+.+.|++++|+|..+|+++|+.|+|||+|++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7777653 24899999999999 79999
Q ss_pred ccCCCccccccccccCCeeeecCcEEE
Q 011656 292 EKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (480)
Q Consensus 292 ~~iP~~~~~~~~L~~~pv~e~~G~VwV 318 (480)
+..|. .+|++||+++++|.|||
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYV 102 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEE
Confidence 99875 47999999999999998
No 28
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.89 E-value=3.9e-23 Score=177.50 Aligned_cols=99 Identities=21% Similarity=0.403 Sum_probs=92.7
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEc-CCCCcccCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd-~dG~c~~iP 295 (480)
.|+.+|..+||++|..+.+.+.|.+++|+|..+|+++|++|+|||+|++|+.|.+.++.|+||+|||+|| .||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 4999999999999999999999999999997789999999999999999999999999999999999999 699999988
Q ss_pred CccccccccccCCeeeecCcEEEc
Q 011656 296 STQLRNVKIKSLPCFEQEGMIWIW 319 (480)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~VwV~ 319 (480)
.. ..|++||+++++|.|||.
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred cc----CCcceEeEEEECCEEEEe
Confidence 63 369999999999999985
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.89 E-value=5.1e-23 Score=177.40 Aligned_cols=99 Identities=23% Similarity=0.416 Sum_probs=90.0
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCC-CCCCCCCcccCCe----EeccccceEEc-CCCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYS-TDGK 290 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHR-GapLs~G~v~~~~----l~CPYHGW~Fd-~dG~ 290 (480)
.|++|+.++||++|+.+.+.+.|++++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+|| .+|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999999999999999999998788999999999999 8999998776555 99999999999 5999
Q ss_pred cccCCCccccccccccCCeeeecCcEEEcC
Q 011656 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (480)
Q Consensus 291 c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~ 320 (480)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 4799999999999999953
No 30
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=1e-22 Score=172.31 Aligned_cols=92 Identities=26% Similarity=0.500 Sum_probs=86.4
Q ss_pred eeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCCCccc
Q 011656 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQL 299 (480)
Q Consensus 221 V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP~~~~ 299 (480)
||.++||++|+.+.+.+.|.+++|+|. +|+++|++|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-- 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL-- 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc--
Confidence 789999999999999999999999997 899999999999999999999988999999999999995 9999999874
Q ss_pred cccccccCCeeeecCcEE
Q 011656 300 RNVKIKSLPCFEQEGMIW 317 (480)
Q Consensus 300 ~~~~L~~~pv~e~~G~Vw 317 (480)
..|++||+++++|.||
T Consensus 80 --~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --CCcceEEEEEECCEEC
Confidence 3699999999999987
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.87 E-value=2.5e-22 Score=173.83 Aligned_cols=100 Identities=20% Similarity=0.353 Sum_probs=90.4
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccC-CeEeccccceEEcC-CCCcccC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM 294 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~-~~l~CPYHGW~Fd~-dG~c~~i 294 (480)
.|+.+|..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 3899999999999998888876 88999995 8999999999999999999998887 79999999999994 9999988
Q ss_pred CCccccccccccCCeeeecCcEEEcCCC
Q 011656 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGD 322 (480)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~VwV~~g~ 322 (480)
|.. .+|++|++++++|.|||.+..
T Consensus 80 p~~----~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 80 PAT----DPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred CCC----CCcceEeEEEECCEEEEEccC
Confidence 753 579999999999999998754
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.84 E-value=4e-21 Score=162.39 Aligned_cols=92 Identities=32% Similarity=0.668 Sum_probs=78.8
Q ss_pred ceEEeeecCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCc--ccCCeEeccccceEEcCC-CCcc
Q 011656 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 292 (480)
Q Consensus 217 ~W~~V~~~~eL~~-g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~--v~~~~l~CPYHGW~Fd~d-G~c~ 292 (480)
.|++|+.++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999997 88888888 55555555689999999999999999999994 456899999999999965 9999
Q ss_pred cCCCccccccccccCCeeeec
Q 011656 293 KMPSTQLRNVKIKSLPCFEQE 313 (480)
Q Consensus 293 ~iP~~~~~~~~L~~~pv~e~~ 313 (480)
..|+.. .++.||+.+++
T Consensus 80 ~~p~~~----~l~~~~v~ve~ 96 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEG 96 (97)
T ss_dssp ESTTCS----BSTEEEEEEET
T ss_pred cCCCCC----CcCCCCeEEeC
Confidence 999842 68999998875
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.84 E-value=9.4e-21 Score=164.13 Aligned_cols=98 Identities=28% Similarity=0.616 Sum_probs=91.4
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCC-CCCCCCCCcccCC----eEeccccceEEc-CCCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYS-TDGK 290 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpH-RGapLs~G~v~~~----~l~CPYHGW~Fd-~dG~ 290 (480)
.|+.||..+||++|..+.+.+.|++|+|||..+|+++|++|+||| ++++|+.|.+.+. .|.||+|+|+|| .+|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999879999999999999 8999999988765 999999999999 6999
Q ss_pred cccCCCccccccccccCCeeeecCcEEEc
Q 011656 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (480)
Q Consensus 291 c~~iP~~~~~~~~L~~~pv~e~~G~VwV~ 319 (480)
|+..|. .++++|||++.+|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998665 579999999999999983
No 34
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.83 E-value=1.8e-20 Score=158.96 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=87.6
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCCC
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP~ 296 (480)
|++++..++|++|+...+.+.+.+++|+|+.+|+++|++|.|||+|++|..+...++.|+||+|||+||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999999999999999999999988899999999999999999999888899999999999997 999999987
Q ss_pred ccccccccccCCeeeec-CcE
Q 011656 297 TQLRNVKIKSLPCFEQE-GMI 316 (480)
Q Consensus 297 ~~~~~~~L~~~pv~e~~-G~V 316 (480)
...|++||+++.+ +.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 3679999999884 444
No 35
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=162.84 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=87.9
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEc-CCCcEEEeecCCCCCCCC-CCCCcccC---C-eEeccccceEEc-CCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYS-TDG 289 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~-~dG~v~A~~n~CpHRGap-Ls~G~v~~---~-~l~CPYHGW~Fd-~dG 289 (480)
.|..||..+||++|+.+.+.+.|++|+|+|. .+|+++|++|.|||.|++ |+.|.+.+ + .|+||+|||+|| .+|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 589999999999999985 99997742 2 499999999999 799
Q ss_pred CcccCCCccccccccccCCeeeecCcEEEc
Q 011656 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (480)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~VwV~ 319 (480)
+|+..|. ..|++|||++++|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9998664 479999999999999984
No 36
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.81 E-value=6.6e-20 Score=155.12 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=79.3
Q ss_pred eeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCcccc
Q 011656 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (480)
Q Consensus 221 V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~ 300 (480)
+|..+||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 578899999999999999999999999899999999999999999998865 5799999999999999999999873
Q ss_pred ccccccCCeeeec
Q 011656 301 NVKIKSLPCFEQE 313 (480)
Q Consensus 301 ~~~L~~~pv~e~~ 313 (480)
..|++|++...+
T Consensus 78 -~~l~~y~v~~~~ 89 (91)
T cd03477 78 -SGLKPADDAPID 89 (91)
T ss_pred -CCCCeeEeeccc
Confidence 468899887543
No 37
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=157.90 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=89.9
Q ss_pred CceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCC-eEeccccceEEc-CCCCccc
Q 011656 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYS-TDGKCEK 293 (480)
Q Consensus 216 ~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~-~l~CPYHGW~Fd-~dG~c~~ 293 (480)
..|+.+|..++|+++..+.+.+.+...++++..+|+++|+.|+|||.+++|+.|.+.++ .|+||.|+|.|| .||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 47999999999999988888884436677777899999999999999999999999886 599999999999 7999999
Q ss_pred CCCccccccccccCCeeeecCcEEEcC
Q 011656 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (480)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~VwV~~ 320 (480)
.|+.. .|++||+.+.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99853 299999999999999975
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.74 E-value=7.6e-18 Score=150.78 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=85.1
Q ss_pred EeeecCCCCCCCeEEEEEcC--eeEEEEEcC---------CCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-
Q 011656 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 287 (480)
Q Consensus 220 ~V~~~~eL~~g~~~~v~l~G--~~vVv~R~~---------dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~- 287 (480)
.||..++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||+|++|+.+. .++.|+||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 57899999999999999887 899999964 7999999999999999999977 6789999999999996
Q ss_pred -CCCcccCCCccccccccccCCeeee--cCcEEEc
Q 011656 288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (480)
Q Consensus 288 -dG~c~~iP~~~~~~~~L~~~pv~e~--~G~VwV~ 319 (480)
+|+|+..|. ...|++||++++ +|.|||.
T Consensus 84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence 579998886 357999999999 9999985
No 39
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.71 E-value=3.4e-17 Score=146.34 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=74.4
Q ss_pred CCCCeEEEE-EcCeeEEEEEcCCCcE--EEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCcccccccc
Q 011656 228 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 304 (480)
Q Consensus 228 ~~g~~~~v~-l~G~~vVv~R~~dG~v--~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L 304 (480)
.||++..+. ..+.+.++.+..+|++ +|++|.|||+|++|..+.. ++.|+||+|||+||.+|+++..|. ...|
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L 95 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSL 95 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCC
Confidence 478877666 4455555555579977 8999999999999998764 579999999999999999998886 3579
Q ss_pred ccCCeeeecCcEEEcCCCC
Q 011656 305 KSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 305 ~~~pv~e~~G~VwV~~g~~ 323 (480)
+.|++++.+|.|||.+..+
T Consensus 96 ~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 96 ALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ceEeEEEECCEEEEEECcc
Confidence 9999999999999976543
No 40
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.64 E-value=7.9e-16 Score=138.32 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=81.6
Q ss_pred EeeecCCCCCCCeEEEEEcC--eeEEEEEc---------CCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCC
Q 011656 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (480)
Q Consensus 220 ~V~~~~eL~~g~~~~v~l~G--~~vVv~R~---------~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~d 288 (480)
.+|..+||++|+++.+.+.+ .+++++|. .+|+++|++|.|||.|++|+.+. .++.|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 58999999999999999765 47888883 58999999999999999999875 66899999999999964
Q ss_pred --CCcccCCCccccccccccCCeeee-cCcEEEc
Q 011656 289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWIW 319 (480)
Q Consensus 289 --G~c~~iP~~~~~~~~L~~~pv~e~-~G~VwV~ 319 (480)
|+|+..|. ...|++||+++. +|.||..
T Consensus 87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~~ 116 (129)
T TIGR02694 87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFAE 116 (129)
T ss_pred CCCcEECCCC----CCCCCeeEEEEECCCeEEEE
Confidence 69998776 357999999996 5999953
No 41
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.62 E-value=8e-16 Score=133.34 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=66.0
Q ss_pred cCCCCCCCeEEEEE-cCeeEEEEEcCCCcEEEeecCCCCCCCCCCCC--cccCCeEeccccceEEc-CCCCcccCCC
Q 011656 224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS 296 (480)
Q Consensus 224 ~~eL~~g~~~~v~l-~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G--~v~~~~l~CPYHGW~Fd-~dG~c~~iP~ 296 (480)
..||++|..+.+.+ .|.+|+|+|. +|+++|+.|+|||+|++|+.| .++++.|+||+|||+|| .+|+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999995 899999999999999999994 58888999999999999 7999998665
No 42
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.60 E-value=3.2e-15 Score=133.87 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=80.8
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEEcC----------------------------CCcEEEeecCCCCCCCCCCCCcccCC
Q 011656 223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (480)
Q Consensus 223 ~~~eL~~g~~~~v~l~G~~vVv~R~~----------------------------dG~v~A~~n~CpHRGapLs~G~v~~~ 274 (480)
..++|++|+.+.+...|.+|+|+|.. +|+++|+.+.|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 45789999999999999999999952 67999999999999999988766778
Q ss_pred eEeccccceEEcCCCCcccCCCccccccccccCCeeeec-CcEEE
Q 011656 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 318 (480)
Q Consensus 275 ~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~-G~VwV 318 (480)
.|.||+|||+||.+|+.+..|. +..|+.||+...+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999998876 3579999998766 67765
No 43
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.49 E-value=9e-14 Score=131.46 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=74.2
Q ss_pred CCCCCeEEEE-EcCeeEEEEEcCCCcE--EEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCccccccc
Q 011656 227 LKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK 303 (480)
Q Consensus 227 L~~g~~~~v~-l~G~~vVv~R~~dG~v--~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~ 303 (480)
.++|+...+. +.|.+.++++..+|++ +|+++.|||.||+|..+..+ +.|.||+|||+||.+|+.+..|. ...
T Consensus 72 ~~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa----~~~ 146 (178)
T PRK13474 72 HPAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPA----PLS 146 (178)
T ss_pred CCCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCC----CCC
Confidence 3678777776 6777744444468999 67799999999999988754 69999999999999999998886 357
Q ss_pred cccCCeeeecCcEEEcC
Q 011656 304 IKSLPCFEQEGMIWIWP 320 (480)
Q Consensus 304 L~~~pv~e~~G~VwV~~ 320 (480)
|+.|++++.+|.|+|.+
T Consensus 147 L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 147 LALVHVTVEDDKVLFSP 163 (178)
T ss_pred CCeEeEEEECCEEEEEE
Confidence 99999999999999965
No 44
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.34 E-value=4.3e-12 Score=119.64 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=77.9
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcC----------------------------------CCcEEEeecCCCCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 262 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~----------------------------------dG~v~A~~n~CpHR 262 (480)
.|..| ..++|++|+.+.+.+.|.+++|+|.. +++++|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 46677 78999999999999999999999851 48999999999999
Q ss_pred CCCCCC-Cccc-CCeEeccccceEEcCCCCcccCCCccccccccccCCeeeecC
Q 011656 263 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 314 (480)
Q Consensus 263 GapLs~-G~v~-~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G 314 (480)
||.+.+ +... .+.|.||+||++||.+|+.+..|. +..|+.||+...++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCC
Confidence 987754 3333 468999999999999999998876 35799999986554
No 45
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.18 E-value=7.6e-11 Score=109.08 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=73.3
Q ss_pred EEEEecchhhHhhhcCCCCCCCCCCccccccCCCC---CceeeeecCCCCC-------------CCccc--CCceeeEEe
Q 011656 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-------------QGYWD--PYPIDMEFR 406 (480)
Q Consensus 345 ~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~~~~~---p~~~~~~~p~~~~-------------~g~~~--~~~~~~~f~ 406 (480)
..+++|||++++||++|++|++|||.+++|..... +...+......++ .+.-+ .......|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999999875321 1111111000000 00000 011346789
Q ss_pred CceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchhh
Q 011656 407 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV 462 (480)
Q Consensus 407 ~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~~ 462 (480)
+|+++........+|. ...+..+.+++.+||+++++|+++|...+++...
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~ 134 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPD 134 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCC
Confidence 9998877765544332 1123356778999999999999999999998654
No 46
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.04 E-value=1.1e-09 Score=102.74 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=53.7
Q ss_pred CCCcEEEeecCCCCCCCCCCC---------------CcccCCeEeccccceEEcC-CC-CcccCCCccccccccccCCee
Q 011656 248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF 310 (480)
Q Consensus 248 ~dG~v~A~~n~CpHRGapLs~---------------G~v~~~~l~CPYHGW~Fd~-dG-~c~~iP~~~~~~~~L~~~pv~ 310 (480)
.+|+++|++++|||+||++.. |...++.|.||+|||+||. +| ..+..|.. ..|+.|+++
T Consensus 73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~ 148 (171)
T cd03475 73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILE 148 (171)
T ss_pred CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEE
Confidence 479999999999999998763 4456789999999999996 55 45555653 468999988
Q ss_pred eec--CcEEEc
Q 011656 311 EQE--GMIWIW 319 (480)
Q Consensus 311 e~~--G~VwV~ 319 (480)
+.+ |.||+-
T Consensus 149 ~d~~~d~iyAv 159 (171)
T cd03475 149 YDSSTDDLYAV 159 (171)
T ss_pred EeCCCCcEEEE
Confidence 773 788874
No 47
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=98.95 E-value=3.7e-09 Score=97.14 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=63.5
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCccccccCC----CCCceeeeecC----CCCCCCcc-------------cCCcee
Q 011656 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW----SVPSLVKFLTP----ASGLQGYW-------------DPYPID 402 (480)
Q Consensus 344 ~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~~~----~~p~~~~~~~p----~~~~~g~~-------------~~~~~~ 402 (480)
...+++||||+++||++|+||++++|+++++... ..........+ .......| ......
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGYL 82 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEEEeccCCCCChhhcccchhhhcccccccccccCeE
Confidence 3578999999999999999999999999987521 00011111110 00000000 011234
Q ss_pred eEEeCceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchh
Q 011656 403 MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS 461 (480)
Q Consensus 403 ~~f~~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~ 461 (480)
..+.+|++++.... ...+++.++|+++++|++.+++......
T Consensus 83 ~~~~fPn~~~~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~ 124 (188)
T cd00680 83 YLYLFPNLMIGLYP-----------------DSLQVQQFVPIGPNKTRLEVRLYRPKDE 124 (188)
T ss_pred EEEECCcEeeeecC-----------------CEEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 66789998754321 1345778999999999999998766543
No 48
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.67 E-value=3.4e-08 Score=93.17 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=60.8
Q ss_pred cCeeEEEEEcCCCcEE-----EeecCCCCCCCCCCC-CcccCCeEeccccceEEcCCCCcccCCCccccccccccCCeee
Q 011656 238 FEEPWVIFRGKDGIPG-----CVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE 311 (480)
Q Consensus 238 ~G~~vVv~R~~dG~v~-----A~~n~CpHRGapLs~-G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e 311 (480)
.+.+...+++.++.+. |+...|.|.||...+ +....+.|.||+||.+||.+|+.+..|+. ..|+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~----~~L~~~~~~~ 157 (177)
T COG0723 82 AGPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAP----RPLPIPPLEY 157 (177)
T ss_pred ccccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCC----CCcCCceEEE
Confidence 3455555666565555 999999999999999 56677999999999999999999998874 5788888876
Q ss_pred ecCcEEE
Q 011656 312 QEGMIWI 318 (480)
Q Consensus 312 ~~G~VwV 318 (480)
..+-+++
T Consensus 158 ~~d~~~~ 164 (177)
T COG0723 158 DSDKLYL 164 (177)
T ss_pred eCCceEE
Confidence 6664443
No 49
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.59 E-value=9e-08 Score=81.17 Aligned_cols=63 Identities=29% Similarity=0.646 Sum_probs=48.4
Q ss_pred EeCceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchhhcCCcccHHHHHHHHH
Q 011656 405 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 477 (480)
Q Consensus 405 f~~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~~l~~lp~i~~~~~~~~ 477 (480)
|.+||++.++... .....++.+++++++|+|+++|+||+++++.+||..|+.++ +|+||.|+.
T Consensus 1 F~pPc~v~~~~~~--------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~--~P~wl~H~~ 63 (92)
T PF08417_consen 1 FIPPCLVRSTEEG--------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKL--IPRWLSHLT 63 (92)
T ss_pred CCCCEEEEEeccc--------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhc--CCHHHHHHh
Confidence 6799999877111 11223456788899999999999999999999995555555 569999987
No 50
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=98.58 E-value=3.3e-07 Score=86.24 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=29.5
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCcccccc
Q 011656 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (480)
Q Consensus 343 ~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~ 375 (480)
...++++||||+++||++|+||++++|++|++.
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~ 35 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHP 35 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhc
Confidence 346789999999999999999999999998863
No 51
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=98.52 E-value=4e-07 Score=85.13 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceee-------eecCC-CCCCCcccCC--ceeeEEeCceeEEE
Q 011656 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------FLTPA-SGLQGYWDPY--PIDMEFRPPCMVLS 413 (480)
Q Consensus 344 ~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~~~~~p~~~~-------~~~p~-~~~~g~~~~~--~~~~~f~~P~~~~~ 413 (480)
..++++||||+++||++|+||++++|++|++.......... ...+. +.....++.. .....+.+||+++.
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i~ 83 (175)
T cd08883 4 REYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLMLN 83 (175)
T ss_pred EEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEeee
Confidence 46789999999999999999999999998854211100000 00010 0011112211 12245678998765
Q ss_pred EeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecC
Q 011656 414 TIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLD 458 (480)
Q Consensus 414 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rn 458 (480)
.. ++ ...+..+.|.++++|++.+.+...
T Consensus 84 ~~----~~-------------~~~~~~~~P~~p~~t~~~~~~~~~ 111 (175)
T cd08883 84 RY----PP-------------GMDVNVVLPLGPERCKVVFDYFVD 111 (175)
T ss_pred ec----CC-------------eEEEEEEEeCCCCcEEEEEEEEEe
Confidence 32 11 133455789999999987776543
No 52
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=98.43 E-value=8.3e-07 Score=83.83 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=57.8
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceeeeecCCC------CCC--Cccc---CCceeeEEeCceeE
Q 011656 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPAS------GLQ--GYWD---PYPIDMEFRPPCMV 411 (480)
Q Consensus 343 ~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~~~~~p~~~~~~~p~~------~~~--g~~~---~~~~~~~f~~P~~~ 411 (480)
...++++||||+++||++|+||++++|+++++................ ... .... .......+.+||++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 346789999999999999999999999998854211111011000000 000 0000 01123456789987
Q ss_pred EEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEee
Q 011656 412 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMS 456 (480)
Q Consensus 412 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~ 456 (480)
+... ++. ....++.+.|.++++|++.+.+.
T Consensus 83 i~~~----~~~-----------~~~~~~~~~P~~p~~t~~~~~~~ 112 (182)
T cd08886 83 LNVY----PGA-----------GNMGVINIIPVDAETTLQHYDFY 112 (182)
T ss_pred EEee----CCC-----------CeEEEEEEEeCCCCeEEEEEEEE
Confidence 6432 110 02345668899999999876654
No 53
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=98.42 E-value=7.1e-07 Score=83.13 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.4
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCcccccc
Q 011656 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (480)
Q Consensus 344 ~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~ 375 (480)
.+++++||||+++||++|+||++++|++|++.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~ 35 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAP 35 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcc
Confidence 46789999999999999999999999999864
No 54
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=98.29 E-value=3.6e-06 Score=80.85 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.4
Q ss_pred CceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 337 ~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
++++.....++++||||+++||++|+||++++|+++..
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~ 44 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELAR 44 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHh
Confidence 45555667789999999999999999999999997653
No 55
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.24 E-value=2e-06 Score=87.57 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred cCCCcEEEeecCCCCCCCCCCCC------c----------------------c---cCCeEeccccceEEcCC--CCccc
Q 011656 247 GKDGIPGCVQNTCAHRACPLHLG------S----------------------V---NEGRIQCPYHGWEYSTD--GKCEK 293 (480)
Q Consensus 247 ~~dG~v~A~~n~CpHRGapLs~G------~----------------------v---~~~~l~CPYHGW~Fd~d--G~c~~ 293 (480)
+.++.|.||+.+|+|.||++..- . - ..+.|.|||||.+||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 35688999999999999988321 0 0 12489999999999963 57888
Q ss_pred CCCccccccccccCCeeee--cCcEEEc
Q 011656 294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (480)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~--~G~VwV~ 319 (480)
.|.. ..|..++++.. .|.+++-
T Consensus 253 GPA~----rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTV----RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCCcceEEEeCCCCeEEEE
Confidence 8874 45888888765 4677774
No 56
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.16 E-value=1.8e-06 Score=82.08 Aligned_cols=52 Identities=29% Similarity=0.446 Sum_probs=46.1
Q ss_pred EcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCc
Q 011656 246 RGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297 (480)
Q Consensus 246 R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~ 297 (480)
|.++=++.++..+|.|.||-.....++.+.+.||+||.+||..|+....|+.
T Consensus 140 rvk~~ewl~~igVCThLGCVp~~~AGd~gg~~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 140 RVKKPEWLVVIGVCTHLGCVPIANAGDYGGYYCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred hccCcceEEEEeeeccccccccccccccCceecccccccccccCceecCCCC
Confidence 4455677999999999999998888888899999999999999999999873
No 57
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=97.69 E-value=0.00011 Score=71.75 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=29.7
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCc--ccccc
Q 011656 343 EIVMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 375 (480)
Q Consensus 343 ~~~~~~~~Nwk~~iEN~lD~yH~~~vH~--~t~~~ 375 (480)
..++++++|||+.+||+.|.||++.+|. .||+.
T Consensus 3 ~~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 3 YYRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred ceeeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 4567899999999999999999999999 88865
No 58
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=97.56 E-value=0.00011 Score=71.18 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=30.1
Q ss_pred EEEEEEecchhhHhhhcC-CCCCCCCCCccccccC
Q 011656 343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKG 376 (480)
Q Consensus 343 ~~~~~~~~Nwk~~iEN~l-D~yH~~~vH~~t~~~~ 376 (480)
..++.++||||+++||++ |.||++++|.+++.-+
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~ 42 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAG 42 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhh
Confidence 467889999999999999 9999999999887543
No 59
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=97.50 E-value=9.7e-06 Score=75.21 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=26.8
Q ss_pred EEEEecchhhHhhhcCCCCCCCCCCcccccc
Q 011656 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (480)
Q Consensus 345 ~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~~ 375 (480)
.++++||||+++||++|+||++++|+++++.
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~ 41 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGF 41 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhh
Confidence 4568999999999999999999999998653
No 60
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=97.17 E-value=0.00011 Score=72.48 Aligned_cols=32 Identities=31% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 343 ~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
..++.++||||+.+||+.|.||++++|.+++.
T Consensus 3 ~~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 3 THRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eeEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 34678999999999999999999999998774
No 61
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=96.88 E-value=0.00043 Score=68.63 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.9
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCcccc
Q 011656 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373 (480)
Q Consensus 344 ~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~ 373 (480)
....++||||+++|||+|.||++++|+++.
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~ 33 (243)
T cd08882 4 VTKVLPCNWKVAQEAFNESYHVPTTHPQLL 33 (243)
T ss_pred EEEEecCCCeeeHHhcCCcccCcccchhHH
Confidence 357899999999999999999999998754
No 62
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=96.65 E-value=0.011 Score=58.37 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.0
Q ss_pred CCceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccc
Q 011656 336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST 372 (480)
Q Consensus 336 ~~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t 372 (480)
++..+. .....+.|||.+.+||.+|+.|+ |+|..+
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s 55 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDS 55 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCc
Confidence 345444 44678999999999999999998 999854
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.68 E-value=0.017 Score=62.18 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=34.4
Q ss_pred CCCCCCCCCcccCCeEeccccceEEc-CCCCcccCCCcc
Q 011656 261 HRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTQ 298 (480)
Q Consensus 261 HRGapLs~G~v~~~~l~CPYHGW~Fd-~dG~c~~iP~~~ 298 (480)
|.|+||..|-...+.++||+||..|+ .+|....-|...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999987889999999999999 699998888753
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=83.70 E-value=3 Score=36.85 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=23.7
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
.|-+-|..+|.+|. +|-++++.|++|+++...++--.++|++
T Consensus 27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666643 4555555555555555555555555444
No 65
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=74.21 E-value=17 Score=34.47 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=56.9
Q ss_pred CceeehhhHHHHhhhcce---ee----------ccccchh--HH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 011656 69 GKFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 132 (480)
-++--||+|.++++.++. |+ ++ +.+| +| .+|++|+++.|+-++- +-..+..+++++...++
T Consensus 52 ~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~ 128 (173)
T PRK00294 52 ERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQD 128 (173)
T ss_pred HHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHH
Confidence 357789999999876652 22 22 3333 33 8899999999886652 33345667777777776
Q ss_pred HHHHHHHHHhhh---HHHHHHHhhhhHHHHHHHH
Q 011656 133 DLAQAHRQVHIS---EARVATALDKLAYMEALVN 163 (480)
Q Consensus 133 ~~~~a~~~~~~s---e~Rv~~aLd~~~~~e~~~r 163 (480)
++.++-.+.=-. =.....++.|+.+|.++..
T Consensus 129 ~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 129 ELNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 666554432111 1244567777777765543
No 66
>PRK14161 heat shock protein GrpE; Provisional
Probab=70.13 E-value=22 Score=33.96 Aligned_cols=55 Identities=29% Similarity=0.418 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
||...-+|.++++++. +..|++|+++|++.|.+++....+...|.....+....+
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~ 66 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY 66 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778889988774 577999999999999999999999999999888888776
No 67
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=69.21 E-value=14 Score=33.51 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHHhhhH
Q 011656 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHISE 145 (480)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~se 145 (480)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-++...
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~ 119 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLR 119 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 449999999999988885555444 44577788888888866655554443
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.57 E-value=15 Score=29.26 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=39.8
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 115 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
..+..+..++.|++.||.++++...+.--.++.+..--+.-..+|+++|.++
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3445567788899999999998888888888777654366677788888876
No 69
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.21 E-value=16 Score=31.90 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhhhc
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~l~ 168 (480)
+...+++|++.+++|+++..++..-.++.|..-=+.-..+|+++|.+|--
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46788899999999998888888888888873323356778899988743
No 70
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=67.56 E-value=30 Score=32.96 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred eeehhhHHHHhhhcceeecc-------------ccchh---HHHHHHHHHHHHHhh
Q 011656 71 FLDVNQALEVARYDIQYCDW-------------RARQD---VLTIMLLHEKVVEVL 110 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~l 110 (480)
+--+|+|.++++..+.-..+ .+..| |..+|++|++++|+-
T Consensus 56 s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~ 111 (176)
T PRK03578 56 ATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDAR 111 (176)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhh
Confidence 35799999998876632221 23345 558899999999864
No 71
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.67 E-value=33 Score=27.61 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=45.3
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+-+||...|.--.+=..=...|+.|++.++.|=++=..+......||+.-+.++.-||
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4455555554433333336689999999999999999999999999999999998876
No 72
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=63.31 E-value=42 Score=28.83 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=24.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011656 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARV 148 (480)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv 148 (480)
.||+.+|+.|++-|||++.++-.+.--=-+|+
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~ 32 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRI 32 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999998877654433333
No 73
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=60.90 E-value=6.2 Score=33.96 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.5
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 011656 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (480)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (480)
+++++..+-.++|.+|.|.+..||=||+.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666678899999999999999999975
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.60 E-value=56 Score=29.80 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCceeehhhHHHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 011656 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~R 147 (480)
.+...|+.+.+.++-.=| -+-+.|.-.-+.+.+++-..-+.+.+-...+..|+.+++.++.+++.++.+.-..+..
T Consensus 27 ~~~~~~~~~vin~i~~Ll----~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLL----QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666653212 1334566677788888888888888888889999999999999999888888888888
Q ss_pred HHHHhhhhHHH
Q 011656 148 VATALDKLAYM 158 (480)
Q Consensus 148 v~~aLd~~~~~ 158 (480)
+.....++...
T Consensus 103 ~~~~~~~~k~~ 113 (151)
T PF11559_consen 103 LKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHH
Confidence 77666666655
No 75
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=58.03 E-value=39 Score=27.33 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHhhhhHHHHHHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 163 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se-----~Rv~~aLd~~~~~e~~~r 163 (480)
+|...|+++|.+|++||..-.-|-.+.. +++...--.++.+..+.+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887766665 355555555555544444
No 76
>PRK14156 heat shock protein GrpE; Provisional
Probab=57.93 E-value=47 Score=31.79 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=44.5
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
.+.|.||..+-+-+.+ +..|+++++.|++.+.++.....+...|..........+
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~ 74 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRY 74 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555555 788999999999999999999999999999887777765
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.58 E-value=53 Score=32.61 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=17.5
Q ss_pred CCCeEEEEE--cCeeEEEEEcCCCcEEEee
Q 011656 229 DDTMVPFDC--FEEPWVIFRGKDGIPGCVQ 256 (480)
Q Consensus 229 ~g~~~~v~l--~G~~vVv~R~~dG~v~A~~ 256 (480)
.|..+.+++ .|.=-.+|++.||+-..+.
T Consensus 178 dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~ 207 (251)
T PF11932_consen 178 DGEERQVDFLRLGRVALYYQTLDGSQAGVW 207 (251)
T ss_pred CCeEEEEEEEeecchhheeECCCccceeee
Confidence 566666665 3666677777777644333
No 78
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=54.33 E-value=7.6 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=25.3
Q ss_pred eecCCCCCCCCCCCCcccCCeEeccccceEEc
Q 011656 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd 286 (480)
+...||-.|+||.. .+|.+.||-||-++.
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 56789999999998 678999999998776
No 79
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.12 E-value=63 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 125 KELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 125 ~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
++-+.|++|..+-...-..-+.|+..-|.|+..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 346666667777777777778888888888754
No 80
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=51.79 E-value=30 Score=34.83 Aligned_cols=49 Identities=29% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011656 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (480)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~ 150 (480)
|-.+|+|+||++..=.-++..|.||-+.+.+++.|-++|+.-.++|+++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~ 236 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVER 236 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999999999999999999888887764
No 81
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=49.06 E-value=54 Score=32.19 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=42.3
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHH
Q 011656 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (480)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r 163 (480)
.||.+-+ |.+|+.||+++..+..++..|+..+....+.-..|..+.+.--+-+|
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn 77 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVN 77 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 89999999999999999999999888887777777777775433333
No 82
>PRK09039 hypothetical protein; Validated
Probab=48.71 E-value=76 Score=33.35 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHHHHhhhHHHHHHHhhh-hHHHH
Q 011656 135 AQAHRQVHISEARVATALDK-LAYME 159 (480)
Q Consensus 135 ~~a~~~~~~se~Rv~~aLd~-~~~~e 159 (480)
..++.|+...++++..+|.+ +.+++
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666633 44443
No 83
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=48.48 E-value=52 Score=26.77 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=32.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
.+..+..+++.++.++.+...+.--.+..++ .|+.-...|+++|.+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhc
Confidence 4556777777777777777666666665555 5666677788888886
No 84
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=47.84 E-value=8.2 Score=33.15 Aligned_cols=53 Identities=4% Similarity=0.079 Sum_probs=40.1
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCC
Q 011656 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267 (480)
Q Consensus 211 ~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs 267 (480)
.+.+...||.+.. ++|+-.+++.+|+.+..+-.......+|...-|++|..++
T Consensus 2 ~~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 2 APDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp ---TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 3456789999865 5899999999999998888777778899999999987654
No 85
>PRK04654 sec-independent translocase; Provisional
Probab=47.83 E-value=72 Score=31.44 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~ 156 (480)
.|-.+-+-+-++.+.+.||.+ ...||++|..+++++..+..++..+...+.++=+.+.
T Consensus 35 ~irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~ 92 (214)
T PRK04654 35 WVRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667788888888887 6788998888888888888888888887776655544
No 86
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=47.47 E-value=90 Score=31.00 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhhhcc
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQD 169 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~l~~ 169 (480)
.+|+++.+.=+|.--=.-.|+.++++|..+...++++..+-+.+|.++.........|++-.+..|..+
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567777777777633333599999999999999999999999999999999999999976666555543
No 87
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=47.27 E-value=97 Score=27.81 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=42.0
Q ss_pred CceeehhhHHHHhhhcceeeccccchh-------HH----HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 011656 69 GKFLDVNQALEVARYDIQYCDWRARQD-------VL----TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a 137 (480)
+.-+|+.++++-+.|||+-+|=+-++= || .|..+.. +++.+++ ++..|..-..-|+.|+..-
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~-~l~~v~~------~v~~L~~s~~RL~~eV~~P 98 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES-VLQAVRS------SVESLQSSYERLRSEVIEP 98 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHhhH
Confidence 456899999999999999999765542 22 3445544 4444443 3445555555555555555
Q ss_pred HHHHhh
Q 011656 138 HRQVHI 143 (480)
Q Consensus 138 ~~~~~~ 143 (480)
|+++..
T Consensus 99 y~~~~~ 104 (132)
T PF10392_consen 99 YEKIQK 104 (132)
T ss_pred HHHHHH
Confidence 554443
No 88
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=46.69 E-value=1.4e+02 Score=24.03 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAEL 130 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 130 (480)
-+|++|+.+.++-+. ++...+..|++++...
T Consensus 9 e~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~ 39 (78)
T PF07743_consen 9 EQMELREELEEAQNS--DDEAELEELKKEIEER 39 (78)
T ss_dssp HHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHH
Confidence 799999999998654 2223445555544443
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.52 E-value=1e+02 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=19.9
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
....+..++.++..+++.+.+-+.++.....++.+.-.++..
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555544444444444444444333
No 90
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=46.08 E-value=57 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se 145 (480)
+|...|+++|.+|.+||.+.+.|-...+
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999999999999887766554
No 91
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=45.97 E-value=23 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=37.8
Q ss_pred cchhHH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 011656 92 ARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 92 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 141 (480)
-|.|+. .+.||+-.+ -+|.-.=..-|.+|+.||..+|.||..++.|+
T Consensus 53 ~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 53 QREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred chhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 377777 556777654 57887888889999999999999999998774
No 92
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.43 E-value=1.1e+02 Score=28.11 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=41.3
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
|+-+.+++..|++++...+..|.+-..++...|+.+...-..+...++-.+--|
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 344567888899999999999999999999999888887777777655443333
No 93
>PRK11637 AmiB activator; Provisional
Probab=45.21 E-value=82 Score=33.77 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
+..++++|..+++++.+...++...|+++...
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555554433
No 94
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=44.80 E-value=12 Score=33.06 Aligned_cols=37 Identities=32% Similarity=0.624 Sum_probs=24.4
Q ss_pred CCcEEEeecCCCCCCCCCCCCccc--CCeEeccccceEEcCC
Q 011656 249 DGIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 288 (480)
Q Consensus 249 dG~v~A~~n~CpHRGapLs~G~v~--~~~l~CPYHGW~Fd~d 288 (480)
.|+.--..-.| .|||-.|... .+.+.||+||=--+.|
T Consensus 62 ~g~~e~v~~~C---rAPL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 62 EGEFEPVPHAC---RAPLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred cCccCcCchhh---cCCCCCCCcCCccCcccCCCCCcccCCC
Confidence 35555444455 4677777654 3578999999888743
No 95
>PRK09039 hypothetical protein; Validated
Probab=44.07 E-value=86 Score=32.92 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=36.6
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
++..+.....+..+.-|..|+.|++.|.+++++....+.-+|+|-...=.++..++...+..+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444566666666666666666666666666666666666666654444333
No 96
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=43.47 E-value=1.2e+02 Score=26.40 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=44.7
Q ss_pred eeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC------CCCcccCCCccccccccccCCeeeec
Q 011656 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST------DGKCEKMPSTQLRNVKIKSLPCFEQE 313 (480)
Q Consensus 240 ~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~------dG~c~~iP~~~~~~~~L~~~pv~e~~ 313 (480)
.++++++..+|++++..|.|-=-+ +-.+ ...++.++|-.-|-+|.. .|-|-.+|- +-.+.+
T Consensus 19 vrff~i~~~dg~~~va~daCeiC~-~~GY-~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P~-----------~~~~~~ 85 (102)
T PF10080_consen 19 VRFFAIKKPDGSYRVAFDACEICG-PKGY-YQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIPL-----------PYTVDG 85 (102)
T ss_pred EEEEEEECCCCCEEEEEEeccccC-CCce-EEECCEEEEecCCCEEehhhcccccCCCCccCC-----------ceEecC
Confidence 456788889999999999986431 1111 135789999999999983 344443331 445567
Q ss_pred CcEEEc
Q 011656 314 GMIWIW 319 (480)
Q Consensus 314 G~VwV~ 319 (480)
|.|-|.
T Consensus 86 ~~I~I~ 91 (102)
T PF10080_consen 86 GNIIID 91 (102)
T ss_pred CeEEEe
Confidence 777774
No 97
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=42.38 E-value=1.3e+02 Score=28.67 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=45.0
Q ss_pred eehhhHHHHhhhcce---ee-cc----------ccchhH--H-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH--
Q 011656 72 LDVNQALEVARYDIQ---YC-DW----------RARQDV--L-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE-- 132 (480)
Q Consensus 72 ~~~~~~~~~~~~~~~---~~-~~----------~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-- 132 (480)
--||+|..+++..+. |+ .- .+..|. | -+|+++++++|+ .-+++...+..|++++....+
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHH
Confidence 457888888777662 22 11 233332 2 788999999886 224444555555555443333
Q ss_pred --HHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 011656 133 --DLAQAHRQVHISEARVATALDKLAYMEALV 162 (480)
Q Consensus 133 --~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~ 162 (480)
++.+|=..-.. ......+.|+.++.++.
T Consensus 131 ~~~l~~~~~~~d~--~~A~~~~~rL~y~~kl~ 160 (173)
T PRK01773 131 LTELSTALNSQQW--QQASQINDRLRFIKKLI 160 (173)
T ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHHHHHH
Confidence 33322211111 23345555666655443
No 98
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.70 E-value=1.3e+02 Score=30.72 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+...+++|..++|+|.++...+.-...|+...-+||+.++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999998885
No 99
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=38.07 E-value=37 Score=27.76 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 011656 121 GTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~ 141 (480)
=+|||+|...+.||+.|=||-
T Consensus 25 f~LRk~l~~~rqELs~aLYq~ 45 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQH 45 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999998884
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.11 E-value=1.1e+02 Score=31.79 Aligned_cols=37 Identities=35% Similarity=0.417 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
..+|++|++||+|+.+-..++.-.++..+..+..++.
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444
No 101
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=36.08 E-value=66 Score=28.72 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=30.6
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 112 PLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
.|.....+|..|+..|.++++++...+..+...+..|+..|......
T Consensus 63 ~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 63 NLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKEL 109 (133)
T ss_dssp -----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556778889999999999999999999999999888887775
No 102
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.81 E-value=20 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=23.6
Q ss_pred ecCCCCCCCCCCCCcccCCeEeccccceEEcCC
Q 011656 256 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (480)
Q Consensus 256 ~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~d 288 (480)
-..||+.|+..-- .+..-|+|||.|-.|...
T Consensus 9 KR~Cp~CG~kFYD--Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD--LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc--CCCCCccCCCCCCccCcc
Confidence 3579998887653 122679999999999965
No 103
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.75 E-value=52 Score=25.68 Aligned_cols=32 Identities=38% Similarity=0.420 Sum_probs=21.6
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 011656 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (480)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (480)
|.=|.+.+=-.+++|+|+|+.+|.+++.+-.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556688888888888887765443
No 104
>PRK00420 hypothetical protein; Validated
Probab=34.13 E-value=30 Score=30.79 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=25.9
Q ss_pred eecCCCCCCCCCCCCcccCCeEeccccceEEcC
Q 011656 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~ 287 (480)
+...||-.|.||..- .++...||-||-.+..
T Consensus 22 l~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 22 LSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred ccCCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 568999999999864 4578999999998873
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.69 E-value=1.3e+02 Score=35.49 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=56.4
Q ss_pred CceeehhhHHHHhhhcceeeccccchhHH-HHHHHHHHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHH
Q 011656 69 GKFLDVNQALEVARYDIQYCDWRARQDVL-TIMLLHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQ 140 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~~~~a~~~ 140 (480)
-||=|+-+=+|..+.+|. |+- -+..++++|+++=+..-| ..+.+..||.||+-||.|+++.+..
T Consensus 445 ~K~~di~kQle~~~~s~~--------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777765 444 456788888887766655 2345778999999999999999888
Q ss_pred HhhhHHHHHHHhhhhHH
Q 011656 141 VHISEARVATALDKLAY 157 (480)
Q Consensus 141 ~~~se~Rv~~aLd~~~~ 157 (480)
+-++..+=++-+..+..
T Consensus 517 ~~~~~qs~~~~~~~l~~ 533 (980)
T KOG0980|consen 517 LSNLAQSHNNQLAQLED 533 (980)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 66665555544444433
No 106
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.58 E-value=33 Score=26.97 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.8
Q ss_pred eecCCCCCCCCCCCCcccCCeEeccccceEEcCC
Q 011656 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~d 288 (480)
-+-.||+-|..... ...+..+.||-.|..+|.|
T Consensus 27 TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK-RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCccccccc-ccccceEEcCCCCCEECcH
Confidence 47789999988776 4456899999999999864
No 107
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=33.37 E-value=1.6e+02 Score=32.40 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhh------h-hHHHHHHHHHhh
Q 011656 124 KKELAELQEDLAQAHRQVHISEARVATALD------K-LAYMEALVNDRL 166 (480)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd------~-~~~~e~~~r~~~ 166 (480)
.+.+..++|+|.+|.+++...++++.+..+ + ++.||+.+..++
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq~~~~~ 439 (451)
T PRK13723 390 EAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 439 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666777777777777766666654333 3 555555554444
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.19 E-value=97 Score=31.66 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
+...+..+-....++...+|++|-+.|.+|+++...+.....+.+.+-..+|+.
T Consensus 52 ~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 52 NRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777888888888888888887755554433334433444433
No 109
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=32.59 E-value=1.3e+02 Score=26.05 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~ 141 (480)
|.-..++.|++-||+++.++-.+-
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~ke 26 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETRE 26 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999998776543
No 110
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.39 E-value=2.2e+02 Score=27.72 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHHHHHhhChh-hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhhhc
Q 011656 101 LLHEKVVEVLNPL-ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (480)
Q Consensus 101 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~l~ 168 (480)
-+|+-+-.+=+|. +-++. +..|+++|......++++-.+-+..|.++.++-.+...+++-....+-.
T Consensus 14 ~~n~~~dk~EDP~~~l~q~-irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLI-IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred HHHHHHHhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3555555566788 55555 9999999999999999999999999999998888888885444444433
No 111
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.37 E-value=85 Score=27.52 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHHHH----HHHHHHhhhHHHHHHHhhhhHHH
Q 011656 126 ELAELQEDLA----QAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 126 ~~~~l~~~~~----~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
||..|++.+. ...++.+.++.++..||.++++.
T Consensus 62 eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 62 ELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 67788888999999999998885
No 112
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.37 E-value=1.5e+02 Score=31.53 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=10.8
Q ss_pred hhhcceeeccccchhHH
Q 011656 81 ARYDIQYCDWRARQDVL 97 (480)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (480)
+|-|- .|||++-|-.
T Consensus 211 ~~~d~--kDWR~hleqm 225 (359)
T PF10498_consen 211 IRADA--KDWRSHLEQM 225 (359)
T ss_pred ccCCc--chHHHHHHHH
Confidence 46664 8999987754
No 113
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.32 E-value=1.2e+02 Score=34.12 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~ 156 (480)
.+.+.++|+.+-|+-|-----+.+.|+++++.|+++|.+|=.+++.+.......|.+..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888888888877666678999999999999999999998888877777666544
No 114
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.80 E-value=2.1e+02 Score=24.93 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
.|.+-..|-+.++.-...|.+......++|..|+.++...+....-.+.+|..-
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888899999999999999999999999999999888888887777644
No 115
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=31.78 E-value=85 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.5
Q ss_pred HHHHHHHHhhChhhhhc
Q 011656 101 LLHEKVVEVLNPLARDY 117 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~ 117 (480)
++||-|.-.|.-+.-.-
T Consensus 8 eLHD~v~q~L~~i~~~l 24 (68)
T PF07730_consen 8 ELHDGVGQSLTAIKMQL 24 (68)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 78888877776655443
No 116
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=31.68 E-value=1e+02 Score=29.94 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=41.5
Q ss_pred cCCCCCCCeEEEEEcC--eeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceE
Q 011656 224 STDLKDDTMVPFDCFE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWE 284 (480)
Q Consensus 224 ~~eL~~g~~~~v~l~G--~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~ 284 (480)
++++.+||.+...+.. .++.|.= ....+-++..+|+-.+.+|.. .+..+.||-.|-+
T Consensus 116 ~d~f~~GDivrA~Vis~~~~~~Lst-~~~dlGVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~t 174 (188)
T COG1096 116 SDAFRIGDIVRARVISTGDPIQLST-KGNDLGVIYARCSRCRAPLVK---KGNMLKCPNCGNT 174 (188)
T ss_pred ccccccccEEEEEEEecCCCeEEEe-cCCcceEEEEEccCCCcceEE---cCcEEECCCCCCE
Confidence 3667789987766643 6666654 455677888888888888887 5689999976643
No 117
>PRK14147 heat shock protein GrpE; Provisional
Probab=31.44 E-value=1.6e+02 Score=27.98 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++|+++|++.+.++.....+-..|...-......+
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999888877775
No 118
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=30.75 E-value=84 Score=27.05 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a 137 (480)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHH
Confidence 789999999999999999888 899999999999988754
No 119
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=30.51 E-value=80 Score=29.64 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--hhhHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATAL--DKLAYME 159 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aL--d~~~~~e 159 (480)
...|++||+.|+++++.|..+==.||+|=.+++ .++++++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLA 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHH
Confidence 357899999999999998888778886544432 3455544
No 120
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=30.34 E-value=1.8e+02 Score=24.72 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhhhHHHHHHHHHhhhc
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQ 168 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se----~Rv~~aLd~~~~~e~~~r~~~l~ 168 (480)
+|...|+++|.+|++||.+-..|-.+.+ +|+...--.++.+..+.+.+-++
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~ 62 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELE 62 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988876644432 35556666666666666655544
No 121
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=29.70 E-value=1.4e+02 Score=31.37 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHH
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~ 164 (480)
.|.-|++++.+|+++|.+...+++++..++.-|..|-+=++.+..+
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdd 221 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDD 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667999999999999999999999999999888887777666554
No 122
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.58 E-value=1e+02 Score=24.28 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
--|+...|+-|..+|++|.++..-.|+|+.++
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788899999999999999999888888753
No 123
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.48 E-value=1.3e+02 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHh
Q 011656 117 YKSIGTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
..||..|..-++-|+.|++++...+-
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888877665543
No 124
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=29.37 E-value=1.9e+02 Score=25.12 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHhhChhhhhccchhh---HHHHHHHHHHHHHHHHHHHhhh
Q 011656 93 RQDVLTIMLLHEKVVEVLNPLARDYKSIGT---MKKELAELQEDLAQAHRQVHIS 144 (480)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~~~~s 144 (480)
+.+-+.+...+...+.-+-.++++.++-.. ++.+|..++.+|.+...++-+.
T Consensus 23 ~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~ 77 (106)
T PF05837_consen 23 EKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVM 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666677777776655 6667777777766666665443
No 125
>PRK14164 heat shock protein GrpE; Provisional
Probab=28.62 E-value=1.8e+02 Score=28.81 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=36.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
..-+..|++||++|++.|.++.....+...|..........+
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~ 117 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIET 117 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999999999998877777775
No 126
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.31 E-value=1e+02 Score=25.47 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011656 124 KKELAELQEDLAQAHRQVHISEARVAT 150 (480)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~se~Rv~~ 150 (480)
|+|..-+++.|+++..++.-.|+||.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999864
No 127
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=28.24 E-value=1.7e+02 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s 144 (480)
+|...|+++|.+|.+||.+-..|..+.
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~ 33 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATG 33 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999888876654
No 128
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.37 E-value=1.6e+02 Score=29.21 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHhhChhhhhccchh---hHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 107 VEVLNPLARDYKSIG---TMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 107 ~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
++-|..+...-+++. .+++||...|.|+.+...|....+.||+
T Consensus 148 ~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 148 EERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444 3444555555555555555444444443
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.26 E-value=4.3e+02 Score=23.68 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHH
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~ 164 (480)
-+..|+++++.||..|..+=+=.=--..+|..--..+.+|+.|-+.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777666655544444455666666666666666554
No 130
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.01 E-value=74 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
...|-+++.+|++++..+..+....+..+..-
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444433
No 131
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=26.91 E-value=1.5e+02 Score=29.32 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=44.7
Q ss_pred ehhhHHHHhhhcceeeccccchhHH--HHHHHHHHHHHhhChh----hhhccc---hhhHHHHHHHHHHHHHHHHHHHhh
Q 011656 73 DVNQALEVARYDIQYCDWRARQDVL--TIMLLHEKVVEVLNPL----ARDYKS---IGTMKKELAELQEDLAQAHRQVHI 143 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~----~~~~~~---~~~~~~~~~~l~~~~~~a~~~~~~ 143 (480)
++..-|.++..|+.-.+ .|.+.+ .|..+-..+-.+-|-+ +.+-++ ...+.++|..|++.|..|-.+...
T Consensus 117 E~~rkl~~~E~~Le~aE--eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~ 194 (237)
T PF00261_consen 117 EVERKLKVLEQELERAE--ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF 194 (237)
T ss_dssp HCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556655443 344444 6666666655555544 333332 456777777777777777777777
Q ss_pred hHHHHH
Q 011656 144 SEARVA 149 (480)
Q Consensus 144 se~Rv~ 149 (480)
+|.+|.
T Consensus 195 aE~~v~ 200 (237)
T PF00261_consen 195 AERRVK 200 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 132
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=26.49 E-value=2.4e+02 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhh
Q 011656 117 YKSIGTMKKELAELQEDLAQAHRQVHI 143 (480)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (480)
.+|...|.++|.+|++||.+-..|-.+
T Consensus 8 ~ls~~eL~~~l~~lkkeL~~lR~~~~~ 34 (66)
T PRK00306 8 ELSVEELNEKLLELKKELFNLRFQKAT 34 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999887755433
No 133
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=26.25 E-value=2.2e+02 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=6.8
Q ss_pred hhhHHHHHHHhhhhHHH
Q 011656 142 HISEARVATALDKLAYM 158 (480)
Q Consensus 142 ~~se~Rv~~aLd~~~~~ 158 (480)
+.+|.+++.-=+.+++|
T Consensus 50 ~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 50 TTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHhhHHhc
Confidence 33344444333344444
No 134
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=26.08 E-value=3e+02 Score=25.89 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=26.3
Q ss_pred ceeehhhHHHHhhhcceeecc-------------ccchh--H-HHHHHHHHHHHHhh
Q 011656 70 KFLDVNQALEVARYDIQYCDW-------------RARQD--V-LTIMLLHEKVVEVL 110 (480)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~-~~~~~~~~~~~~~l 110 (480)
++--||+|.++++-++.-..+ .+..| . ..+|++|++++++-
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~ 106 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIE 106 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhc
Confidence 566799999998866531111 11112 2 27899999998774
No 135
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.95 E-value=65 Score=31.37 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 011656 122 TMKKELAELQEDLAQAHRQVHI 143 (480)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~ 143 (480)
.||+||++|.++|+++......
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999988765
No 136
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.93 E-value=3.3e+02 Score=26.24 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
.+|+-|-.+=+|...=.-.|..|+++|..++..++++-...+..|.++..+..+...+++-+...+
T Consensus 13 ~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 13 NINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666678766556688899999999999999988889999999888888888855444444
No 137
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=85 Score=32.16 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=45.1
Q ss_pred ccccccccccccccceE-EEEEecCCCccccccCcceeeeeecCCCCCCCccCCceeeh
Q 011656 17 YRPAKINTKKSVRGGFR-VFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDV 74 (480)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
|..+.+.-.|-+||||- +|-.||.=|.+..-.-+....+.||++-+..|.+..-+.|.
T Consensus 60 S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl 118 (305)
T KOG1594|consen 60 STKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDL 118 (305)
T ss_pred chhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEEE
Confidence 44477888899999996 68999987777666666677778999999999766666653
No 138
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=25.91 E-value=1.8e+02 Score=27.17 Aligned_cols=70 Identities=26% Similarity=0.431 Sum_probs=37.0
Q ss_pred eeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 011656 86 QYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (480)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~ 156 (480)
.|..||.+..--.+-.+--|||. +..|-.=..-|+.|+..=+.|..++.+|..++-.-+.++..+-..+.
T Consensus 43 dyr~wr~~ee~rly~~~~~~~v~-~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~ 112 (152)
T PF07321_consen 43 DYRQWRQREEERLYAEIQGKVVS-LKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQ 112 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778777665544444444442 22222222345566666666666666666666555555554444333
No 139
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.85 E-value=2.3e+02 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++++|++.|.++.....+...|+....+....+
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999888888776
No 140
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.78 E-value=2.2e+02 Score=28.47 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++|++++++.|.++.....+...|...-..+...+
T Consensus 86 l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~ 124 (227)
T PRK14157 86 LGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQH 124 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999887777776
No 141
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.62 E-value=2.2e+02 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++|+++|++.+.+++....+...|......+...+
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 60 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAY 60 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888887775
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.48 E-value=1.9e+02 Score=30.16 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=4.4
Q ss_pred HHHHhhhccee
Q 011656 77 ALEVARYDIQY 87 (480)
Q Consensus 77 ~~~~~~~~~~~ 87 (480)
-++.|+.|-..
T Consensus 152 ~~~~l~~D~~~ 162 (312)
T smart00787 152 NLEGLKEDYKL 162 (312)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 143
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=25.47 E-value=1e+02 Score=26.78 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 138 (480)
++++.|.|+.+.||--.|-+- |.=||+-|--||.++....
T Consensus 42 ~~EeF~~~Lq~~lns~pqP~l-vPFLK~~lp~Lr~~l~~~~ 81 (96)
T PF07531_consen 42 EAEEFTSKLQEELNSSPQPYL-VPFLKKSLPALRQELPNCA 81 (96)
T ss_dssp -HHHHHHHHHHHCTSS--TTH-HHHHHHHHHHHHHCHCHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-HHHHHHhHHHHHHHHHHHH
Confidence 889999999999999999888 8999999999999987654
No 144
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=25.46 E-value=2.8e+02 Score=26.12 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=45.1
Q ss_pred eeehhhHHHHhhhcc---ee---------ec--cccchh---HHHHHHHHHHHHHhhChhhhhccchhhHHHHHH----H
Q 011656 71 FLDVNQALEVARYDI---QY---------CD--WRARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA----E 129 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~---~~---------~~--~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~ 129 (480)
+--+|+|.++++.++ +| .+ -.+..| |..+|+++++++|.-++ ..+..|++++. +
T Consensus 50 s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~rE~le~~~~~-----~~L~~l~~~~~~~~~~ 124 (166)
T PRK01356 50 ASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILF-----SDLEKIKNKYELMYKN 124 (166)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHH
Confidence 457888888877544 22 11 224444 33788999888766222 22444444443 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHH
Q 011656 130 LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (480)
Q Consensus 130 l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r 163 (480)
+.+++.+|=..-.. ......+.++.+++++..
T Consensus 125 ~~~~l~~~f~~~d~--~~A~~~~~~L~y~~kl~~ 156 (166)
T PRK01356 125 EIDSLKQAFEEQNL--SDATIKTSKLKYIGTLLN 156 (166)
T ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Confidence 44444433222111 344456677777766554
No 145
>PRK11637 AmiB activator; Provisional
Probab=25.45 E-value=2.6e+02 Score=29.94 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=27.7
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+.-++.+.+..=...+..+.++|..+++++.+...++-.+++.+.++-.++...+
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344455555555555555555555555555555555555543
No 146
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.27 E-value=41 Score=37.08 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~ 141 (480)
|..|||||++||+|+..-..||
T Consensus 33 ie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHhhccccccc
Confidence 6667777777777666444433
No 147
>PRK14151 heat shock protein GrpE; Provisional
Probab=25.01 E-value=2.4e+02 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++++|++.+.++.....+...|...-......+
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~ 67 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKF 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999998777777765
No 148
>PF15456 Uds1: Up-regulated During Septation
Probab=24.98 E-value=1.8e+02 Score=26.30 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
|..||||+..|+.-+..+...+. +|..+.+|..++..+
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 77888999888888877776665 777777776666653
No 149
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.79 E-value=2e+02 Score=29.41 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
..+-++...+..=.+++..++++-+.|+..+.+-...+-.++.|+. +|++++|
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~-sLq~vRP 221 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ-SLQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCh
Confidence 3344455555566667777788888888888888888888888874 5777765
No 150
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=24.57 E-value=1.6e+02 Score=29.48 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred hHHHHhhhcceeeccccchhHHHHH-HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 011656 76 QALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (480)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 138 (480)
.-+|-+|.+|--.+=-+|++.|.|. -+++-+-...-+.+...+.+..|++|=..||++|++..
T Consensus 76 ~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 76 DCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777777777888766554 44444555566677777888888888888888887654
No 151
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=24.53 E-value=1e+02 Score=21.80 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 011656 123 MKKELAELQEDLAQAHRQVHISEAR 147 (480)
Q Consensus 123 ~~~~~~~l~~~~~~a~~~~~~se~R 147 (480)
|++|++-||..++.-...-|..|..
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~K 26 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQK 26 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7899999999999888877777653
No 152
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.40 E-value=2.4e+02 Score=29.59 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=55.1
Q ss_pred hhhHHHHhhhcceeeccccchhHHHHH-HHHHHHHHhhCh-hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 74 VNQALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNP-LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
..|-|-+.||||+ |.-=.|-+.|| -+-+-|-|.|.- .+-+-.|+-.+++|++.|--++..+.|---....|+.++
T Consensus 252 a~Q~La~~~~~~E---~~GL~~e~~~~~~~~e~~~E~~~~s~ss~~~sm~r~~~qva~~a~~~~~~RQ~N~~L~~~L~e~ 328 (402)
T COG3551 252 ALQQLAVDRFDIE---WKGLEREFSRAMPLLEYVGELLWQSASSHNESMTRFSEQVADLAMSYTAQRQLNDGLRDRLLEA 328 (402)
T ss_pred HHHHHHHHhcCcc---hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3466778899998 87777777554 566677777754 345677888899999999888888877766666666644
No 153
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.40 E-value=3.3e+02 Score=28.16 Aligned_cols=67 Identities=33% Similarity=0.423 Sum_probs=42.5
Q ss_pred CccCCceeehhhHHHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhh-hhccchhhHHHHHHHHHHHHHH-----HH
Q 011656 65 PQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLA-RDYKSIGTMKKELAELQEDLAQ-----AH 138 (480)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~-----a~ 138 (480)
|.---+||-.=|--|| +|-.|-.|.-|.-|.|- ||.. |..||.||+-+||+--+ -.
T Consensus 53 PP~PEQYLTPLQQKEV-----------------~iRHLkakLkes~~~l~dRetE-I~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 53 PPNPEQYLTPLQQKEV-----------------CIRHLKAKLKESENRLHDRETE-IDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred CCCHHHhcChHHHHHH-----------------HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567776666665 45555555555555443 6665 99999999999987654 23
Q ss_pred HHHhhhHHHHH
Q 011656 139 RQVHISEARVA 149 (480)
Q Consensus 139 ~~~~~se~Rv~ 149 (480)
.|+.+=|||-+
T Consensus 115 AQLALKEARkE 125 (305)
T PF15290_consen 115 AQLALKEARKE 125 (305)
T ss_pred HHHHHHHHHHH
Confidence 45556666644
No 154
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.24 E-value=57 Score=30.98 Aligned_cols=22 Identities=14% Similarity=0.508 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 011656 121 GTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
..+++|++.|.+||.++...+-
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554443
No 155
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.99 E-value=1.8e+02 Score=26.44 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+..+++|+.++++++++-+..+....+.|+.--.|+..+|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777777766666666555655544
No 156
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.95 E-value=2.2e+02 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|+++++.|++.|.++.....+...|...-......+
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999887777776
No 157
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.79 E-value=2.4e+02 Score=27.79 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHH
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~ 160 (480)
++.+|+.-+-..|.|--.-+..+...+..|+++|....+.+...|++...+-.+...|+.
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~ 176 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE 176 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 556666666677777666688899999999999999999999999999988888877764
No 158
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.54 E-value=2.4e+02 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++..|.+.|.+++....+...|..........+
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999999999998777777765
No 159
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=23.43 E-value=1.8e+02 Score=26.54 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=15.3
Q ss_pred hcceeeccc-----cchhHH---HH----HHHHHHH
Q 011656 83 YDIQYCDWR-----ARQDVL---TI----MLLHEKV 106 (480)
Q Consensus 83 ~~~~~~~~~-----~~~~~~---~~----~~~~~~~ 106 (480)
-|..|+||- +.-|+. .| ..+|.||
T Consensus 4 ~dLeYLdLa~~~K~s~~dLahNL~v~~~R~dL~~KV 39 (126)
T PF07028_consen 4 ADLEYLDLATEEKVSNSDLAHNLRVTCYRSDLGSKV 39 (126)
T ss_pred CCchhhhcccccCCcHHHHHhhhhhhhhHhhHHHHH
Confidence 378899883 345555 22 2678888
No 160
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.24 E-value=2.4e+02 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=15.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 011656 117 YKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (480)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~se~R 147 (480)
...|..|+.+|..|+.++..++.+--..-+|
T Consensus 112 ~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444333333
No 161
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=23.13 E-value=93 Score=27.61 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=34.6
Q ss_pred HHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 011656 104 EKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (480)
Q Consensus 104 ~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~ 162 (480)
-.=||||.|.- ==.-.|..+|+++|.|.+|-.+||-+ +-.||-+|+.|.
T Consensus 12 peevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~EmdnmL 64 (127)
T PF15155_consen 12 PEEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNML 64 (127)
T ss_pred chhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHHH
Confidence 34578888865 12245889999999999999999875 345666665443
No 162
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.00 E-value=4e+02 Score=26.29 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 011656 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 141 (480)
+..+.+++...-..+.+-.+.+...|++++++++++......+
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555555554444443
No 163
>PRK10698 phage shock protein PspA; Provisional
Probab=22.74 E-value=4.4e+02 Score=25.93 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHHhhChh-hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 101 LLHEKVVEVLNPL-ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 101 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
-+|+-+-.+=+|. +-++. |..|+++|.++...++++-.+-..+|.++.++-.....+++-....+
T Consensus 14 ~in~~ldkaEDP~k~l~q~-i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al 79 (222)
T PRK10698 14 NINALLEKAEDPQKLVRLM-IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL 79 (222)
T ss_pred HHHHHHHhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555788 55555 89999999999999999888888888888888888888744333333
No 164
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.72 E-value=1.1e+02 Score=23.64 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.2
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456788888998888888899999888889998887766654
No 165
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=22.60 E-value=1.4e+02 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
.++....++-|-.+-..+++|.-+++.+....+.+...++|+.
T Consensus 184 ~~l~~~va~aY~~l~~~~~~l~l~~~~~~~~~~~~~~~~~r~~ 226 (488)
T PRK09915 184 LSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAVKAHQSKVA 226 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555444444444444444
No 166
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.34 E-value=1.2e+02 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 123 MKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 123 ~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
+.++++-|+.++.+...++..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777777777777777777777765
No 167
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.22 E-value=2.9e+02 Score=27.25 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++++|++.|.++.....+...|..........+
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~ 99 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777888888888766666665
No 168
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.10 E-value=3e+02 Score=30.47 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 011656 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (480)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (480)
..|-.|+-.| -..||++|..|+++|.+...
T Consensus 358 ~~~~r~e~~~---ek~lKeeI~~lk~~l~~~~~ 387 (492)
T PF06273_consen 358 RAVDRPETEE---EKFLKEEINALKERLEEEEA 387 (492)
T ss_pred cccccccccc---chhhhhhHHHHHHHHHhhhh
Confidence 3344453333 34788888888888876654
No 169
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=22.07 E-value=1e+02 Score=34.19 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
||-|.-|+.+||-+.+-|..|+|-+|+|=..+-.+|.++
T Consensus 599 i~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DL 637 (790)
T PF07794_consen 599 IGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDL 637 (790)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999888888887
No 170
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.85 E-value=2.9e+02 Score=22.77 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=19.4
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 011656 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
-.||-.+...++-=++-|..||++-..|+.|.+.|+.+.-
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555544433
No 171
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.71 E-value=2.9e+02 Score=27.28 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|+++++.|++.|.+++....+...|......+...+
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~ 101 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKE 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999888887776
No 172
>PRK14159 heat shock protein GrpE; Provisional
Probab=21.61 E-value=2.8e+02 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=36.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
..+..|++++++|.+.|.+++....+-..|..........+
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~ 70 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAY 70 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999888887776
No 173
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.59 E-value=3e+02 Score=27.12 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++|+++|++.|.+++....+...|...-......+
T Consensus 40 i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 40 LEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777877777666665
No 174
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.49 E-value=1.9e+02 Score=31.60 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=52.7
Q ss_pred hHHHHhhhcceeeccccc-hhHH---HHH----------HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 011656 76 QALEVARYDIQYCDWRAR-QDVL---TIM----------LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~---~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 141 (480)
.||+|+=|.--|.+=-.+ .|.+ .|. .-|.+--|-+|.++.+-.+..++...|..||++|-+|+..-
T Consensus 196 kalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~ 275 (575)
T KOG4403|consen 196 KALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQ 275 (575)
T ss_pred hhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 388899998888775555 6655 111 34778888899999999999999999999999999998763
No 175
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=1.8e+02 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011656 122 TMKKELAELQEDLAQAHRQVHISEARVATAL 152 (480)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aL 152 (480)
.|++++-.+|+++.+-..++-..|.++.+.-
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554433
No 176
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.38 E-value=2.5e+02 Score=34.51 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhChhhhh----ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH----HHHHHhhhccc
Q 011656 99 IMLLHEKVVEVLNPLARD----YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME----ALVNDRLLQDR 170 (480)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e----~~~r~~~l~~~ 170 (480)
+...-+.|+|.|..--+- .++|...-..+...|+-|+++++....+|+-++.|=.+++++| ++-+.+...+.
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 334455677777543221 1223333345556677788888888888888888888888875 44445555555
Q ss_pred ccc
Q 011656 171 HTS 173 (480)
Q Consensus 171 ~a~ 173 (480)
+|.
T Consensus 1641 ~A~ 1643 (1758)
T KOG0994|consen 1641 EAK 1643 (1758)
T ss_pred HHH
Confidence 544
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.27 E-value=2.5e+02 Score=32.70 Aligned_cols=10 Identities=40% Similarity=0.398 Sum_probs=7.0
Q ss_pred hhhHHHHhhh
Q 011656 74 VNQALEVARY 83 (480)
Q Consensus 74 ~~~~~~~~~~ 83 (480)
+.||.+++|-
T Consensus 541 L~~a~~vlre 550 (717)
T PF10168_consen 541 LSQATKVLRE 550 (717)
T ss_pred HHHHHHHHHH
Confidence 4577777775
No 178
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.15 E-value=40 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.609 Sum_probs=19.4
Q ss_pred cCCeEec-----cccceEEcCCCCcccCCC
Q 011656 272 NEGRIQC-----PYHGWEYSTDGKCEKMPS 296 (480)
Q Consensus 272 ~~~~l~C-----PYHGW~Fd~dG~c~~iP~ 296 (480)
.++.++| |||.|-|+..|.|+..+.
T Consensus 18 ~dDiVvCp~CgapyHR~C~~~~g~C~~~~c 47 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRDCWEKAGGCINYSC 47 (54)
T ss_pred CCCEEECCCCCCcccHHHHhhCCceEeccC
Confidence 3466777 599999999999987553
No 179
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=21.06 E-value=91 Score=23.05 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=18.6
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 011656 114 ARDYKSIGTMKKELAELQEDLAQ 136 (480)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~ 136 (480)
||-+-=|.+|++-|.+||.|+.+
T Consensus 18 ~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 18 ARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 45555689999999999999975
No 180
>PRK14149 heat shock protein GrpE; Provisional
Probab=20.94 E-value=3.2e+02 Score=26.52 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++++|.+.|.++.....+...|...-......+
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~ 83 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY 83 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999777777765
No 181
>PF07363 DUF1484: Protein of unknown function (DUF1484); InterPro: IPR009957 This family consists of several hypothetical bacterial proteins of around 110 residues in length. Members of this family appear to be found exclusively in Ralstonia solanacearum. The function of this family is unknown.
Probab=20.89 E-value=4.1e+02 Score=23.66 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 96 VLTIMLLHEKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
.|+++..++-+...-+.++ |....++..=.||+.+.+.+.++=.+.--.=.||+..|+.+=.+
T Consensus 8 ~lAl~rq~~l~aqLa~q~~~~~~~~~~~~~~~~~ql~~~~~~i~~~~~~~~~~L~~vsaGL~~vL~L 74 (110)
T PF07363_consen 8 LLALARQRDLIAQLATQLARIGKRAQAPVRATVAQLAAVSEDIEETTEESCARLLRVSAGLDGVLQL 74 (110)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887 56777888888999999888887777777777888888887664
No 182
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.66 E-value=1.8e+02 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARV 148 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv 148 (480)
+..|+++|..|++++++...+.-..++++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766666666655554
No 183
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.53 E-value=4.3e+02 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
.|+..+..||++-....+++--.++.|..++..+..+
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888889999999999999988887774
No 184
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.46 E-value=5.2e+02 Score=23.07 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
+|++|-..-|.-=|.+-+.+.+||+++..++.++.......-.+...+.
T Consensus 42 ~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 42 EAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444334344444455555555555555555555444444444443
No 185
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=20.20 E-value=4.4e+02 Score=24.68 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHHHHHhhChhhhhccch-hhHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHhhhhHHHHHHHHHhhhc
Q 011656 101 LLHEKVVEVLNPLARDYKSI-GTMKKELAELQEDLA----QAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~----~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~l~ 168 (480)
++|..=|--|...+.+.+|- -+|-.+|..|.+|-. +|-.|++.+.+-+.++++... +.|.+||+
T Consensus 81 q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD----~Lr~kLlq 149 (152)
T PF15186_consen 81 QLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERD----LLRWKLLQ 149 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 45555666777777777764 568888888888877 999999999888777766543 56666654
Done!