Query 011656
Match_columns 480
No_of_seqs 417 out of 2207
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 9.6E-46 3.3E-50 379.6 20.5 246 210-463 1-275 (349)
2 2zyl_A Possible oxidoreductase 100.0 5E-38 1.7E-42 326.4 22.0 242 211-461 19-279 (386)
3 3n0q_A Putative aromatic-ring 100.0 2.4E-38 8.3E-43 331.3 17.5 180 176-374 17-212 (409)
4 3vca_A Ring-hydroxylating diox 100.0 5.9E-38 2E-42 328.6 15.5 179 177-374 20-214 (412)
5 1z01_A 2-OXO-1,2-dihydroquinol 100.0 6.5E-37 2.2E-41 323.4 23.3 171 184-374 25-230 (446)
6 3gcf_A Terminal oxygenase comp 100.0 1E-36 3.5E-41 316.0 21.6 232 209-459 26-308 (394)
7 3gkq_A Terminal oxygenase comp 100.0 1E-36 3.5E-41 315.4 21.3 233 209-459 23-305 (389)
8 2de6_A Terminal oxygenase comp 100.0 7.4E-37 2.5E-41 317.7 18.4 162 209-374 20-192 (392)
9 3gzx_A Biphenyl dioxygenase su 100.0 3.3E-37 1.1E-41 326.7 12.0 181 176-375 33-245 (457)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 1.3E-36 4.6E-41 320.8 10.4 180 177-375 12-217 (447)
11 2gbw_A Biphenyl 2,3-dioxygenas 100.0 2.2E-36 7.5E-41 319.9 9.6 180 176-374 13-217 (454)
12 2b1x_A Naphthalene dioxygenase 100.0 1.2E-35 4.1E-40 315.6 9.2 181 176-375 21-227 (470)
13 1uli_A Biphenyl dioxygenase la 100.0 1.8E-34 6.3E-39 305.8 9.0 179 176-373 31-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 9.9E-27 3.4E-31 198.1 11.7 100 217-321 3-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 1.3E-26 4.6E-31 200.0 11.6 104 217-325 1-106 (111)
16 2i7f_A Ferredoxin component of 99.9 7.2E-27 2.5E-31 200.8 9.7 102 217-323 3-106 (108)
17 1fqt_A Rieske-type ferredoxin 99.9 2E-26 6.9E-31 199.4 12.4 102 217-323 5-108 (112)
18 2de6_D Ferredoxin component of 99.9 7.7E-27 2.6E-31 203.4 9.0 104 215-323 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 1.6E-26 5.3E-31 198.1 8.8 101 217-322 1-102 (106)
20 3gce_A Ferredoxin component of 99.9 1.2E-25 4E-30 197.7 11.7 102 217-323 10-114 (121)
21 2jo6_A Nitrite reductase [NAD( 99.9 1.1E-25 3.9E-30 194.8 10.9 100 217-321 6-112 (113)
22 3c0d_A Putative nitrite reduct 99.9 7.7E-26 2.6E-30 198.2 9.6 103 216-323 4-112 (119)
23 2jza_A Nitrite reductase [NAD( 99.9 3.3E-25 1.1E-29 197.3 13.2 103 217-324 3-112 (130)
24 4aiv_A Probable nitrite reduct 99.9 2.2E-25 7.4E-30 196.0 8.7 101 216-321 8-116 (119)
25 3d89_A Rieske domain-containin 99.9 1.3E-25 4.3E-30 205.8 6.0 110 214-324 13-137 (157)
26 4aay_B AROB; oxidoreductase, r 99.9 2.6E-22 8.9E-27 187.6 8.2 144 155-319 4-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.8 4.8E-21 1.6E-25 170.4 11.0 97 217-318 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 4.9E-21 1.7E-25 172.6 6.7 102 215-321 19-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 2E-20 6.9E-25 167.2 8.8 98 217-319 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.7 8.9E-21 3.1E-25 169.8 0.0 97 222-323 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.7 6E-18 2.1E-22 159.3 11.3 98 216-318 61-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.7 1.4E-17 4.8E-22 157.0 12.4 96 218-318 49-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.7 7.4E-18 2.5E-22 160.1 10.5 94 221-318 75-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.7 1.4E-17 4.8E-22 150.5 10.5 93 222-318 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 9.5E-18 3.3E-22 155.3 8.7 98 223-325 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 2.8E-18 9.7E-23 160.5 3.8 92 224-320 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 8.7E-17 3E-21 153.6 -0.3 85 233-321 56-167 (204)
38 3pp5_A BRK1, protein brick1; t 79.8 4.4 0.00015 32.2 6.3 57 88-150 14-70 (73)
39 3p8c_E Probable protein brick1 73.4 4.8 0.00016 32.1 4.8 57 88-150 14-70 (75)
40 3bvo_A CO-chaperone protein HS 73.4 9.1 0.00031 35.9 7.7 61 69-134 91-167 (207)
41 1fpo_A HSC20, chaperone protei 67.9 9.8 0.00033 34.5 6.5 64 69-134 49-128 (171)
42 3uo3_A J-type CO-chaperone JAC 66.2 23 0.00078 32.4 8.6 44 67-110 54-118 (181)
43 2z5i_A TM, general control pro 51.3 19 0.00066 26.5 4.3 38 119-156 13-50 (52)
44 2jee_A YIIU; FTSZ, septum, coi 51.1 41 0.0014 27.1 6.5 56 100-155 9-78 (81)
45 3hho_A CO-chaperone protein HS 51.0 39 0.0013 30.5 7.3 89 69-161 52-161 (174)
46 2yy0_A C-MYC-binding protein; 47.0 20 0.00069 26.5 3.8 30 120-149 21-50 (53)
47 3mq9_A Bone marrow stromal ant 44.7 52 0.0018 33.7 8.1 60 101-160 377-450 (471)
48 4i0x_B ESAT-6-like protein MAB 41.1 47 0.0016 26.9 5.7 38 120-157 34-81 (103)
49 4emc_A Monopolin complex subun 40.8 50 0.0017 30.6 6.3 58 102-159 18-75 (190)
50 2l5g_A GPS2 protein, G protein 39.9 27 0.00091 24.1 3.2 29 114-142 4-32 (38)
51 3j21_W 50S ribosomal protein L 38.9 66 0.0022 25.1 5.9 47 118-164 9-60 (72)
52 3azd_A Short alpha-tropomyosin 38.1 14 0.00048 25.3 1.6 26 119-144 5-30 (37)
53 3twe_A Alpha4H; unknown functi 37.9 39 0.0013 21.1 3.4 21 121-141 4-24 (27)
54 3caz_A BAR protein; thermo-aci 37.3 7.5 0.00026 36.4 0.2 64 50-132 61-126 (294)
55 1d7m_A Cortexillin I; coiled-c 36.1 1.4E+02 0.0048 24.5 7.4 60 105-165 5-71 (101)
56 2akf_A Coronin-1A; coiled coil 35.8 68 0.0023 20.9 4.4 28 121-148 2-29 (32)
57 3a7o_A Autophagy protein 16; c 35.5 84 0.0029 24.7 5.8 38 120-157 13-53 (75)
58 3viq_B Mating-type switching p 34.2 93 0.0032 25.2 6.2 42 120-161 10-53 (85)
59 2rjz_A PILO protein; structura 34.1 48 0.0016 29.2 4.9 43 114-157 11-53 (147)
60 2wuj_A Septum site-determining 32.8 23 0.00079 26.4 2.2 33 105-140 24-56 (57)
61 3u59_A Tropomyosin beta chain; 32.8 1.3E+02 0.0043 24.7 7.0 32 120-151 46-77 (101)
62 3uul_A Utrophin; spectrin repe 32.8 1.1E+02 0.0036 24.5 6.6 56 100-155 52-115 (118)
63 1ic2_A Tropomyosin alpha chain 32.3 65 0.0022 25.4 5.0 31 120-150 43-73 (81)
64 3hnw_A Uncharacterized protein 32.2 66 0.0023 28.2 5.5 42 118-159 89-130 (138)
65 3hnw_A Uncharacterized protein 32.1 1.4E+02 0.0049 26.0 7.7 26 120-145 77-102 (138)
66 3uun_A Dystrophin; triple heli 28.1 1.6E+02 0.0056 23.3 7.0 56 100-155 52-115 (119)
67 3u1c_A Tropomyosin alpha-1 cha 28.0 1.7E+02 0.0058 24.0 7.0 32 120-151 53-84 (101)
68 2k48_A Nucleoprotein; viral pr 27.7 76 0.0026 26.7 4.7 29 124-152 34-62 (107)
69 2h8b_A Insulin-like 3; insulin 27.3 11 0.00038 23.7 -0.3 8 92-99 16-23 (26)
70 4e61_A Protein BIM1; EB1-like 26.2 1.7E+02 0.0056 24.7 6.6 40 119-158 5-44 (106)
71 1ic2_A Tropomyosin alpha chain 26.2 2.2E+02 0.0075 22.2 7.1 37 121-157 37-73 (81)
72 3u06_A Protein claret segregat 25.3 1.1E+02 0.0039 31.3 6.7 45 121-166 6-50 (412)
73 3mq7_A Bone marrow stromal ant 25.1 92 0.0032 26.7 4.8 42 106-149 54-95 (121)
74 2r2v_A GCN4 leucine zipper; co 24.8 70 0.0024 21.6 3.2 25 101-132 5-29 (34)
75 1oeg_A Apolipoprotein E; siali 24.6 30 0.001 22.0 1.3 18 120-137 3-20 (26)
76 4etp_A Kinesin-like protein KA 24.5 1.2E+02 0.004 31.1 6.6 46 120-166 5-50 (403)
77 1fxk_C Protein (prefoldin); ar 24.4 99 0.0034 26.2 5.1 35 120-154 97-131 (133)
78 1c1g_A Tropomyosin; contractIl 23.9 1.4E+02 0.0048 26.7 6.4 16 125-140 223-238 (284)
79 4ani_A Protein GRPE; chaperone 23.7 1.7E+02 0.0059 27.5 7.0 39 120-158 68-106 (213)
80 3ghg_A Fibrinogen alpha chain; 23.4 1.1E+02 0.0038 32.6 6.1 42 122-163 114-155 (562)
81 2zkr_v 60S ribosomal protein L 23.1 1.4E+02 0.0049 25.7 5.8 48 118-165 12-64 (123)
82 3mtu_A Tropomyosin alpha-1 cha 22.6 2.4E+02 0.0081 22.0 6.6 44 119-162 3-46 (75)
83 3j20_Y 30S ribosomal protein S 22.5 50 0.0017 23.9 2.4 37 248-285 11-47 (50)
84 3m0a_A TNF receptor-associated 22.1 2.1E+02 0.0071 21.3 6.0 44 102-151 16-59 (66)
85 1ykh_B RNA polymerase II holoe 22.0 2.8E+02 0.0097 23.8 7.6 69 89-157 54-124 (132)
86 3he5_B Synzip2; heterodimeric 22.0 2.2E+02 0.0074 20.2 6.2 37 123-159 8-44 (52)
87 4a17_U RPL35, 60S ribosomal pr 21.9 2.2E+02 0.0074 24.6 6.7 42 118-159 13-59 (124)
88 1kd8_A GABH AIV, GCN4 acid bas 21.3 1E+02 0.0036 21.0 3.5 29 101-136 5-33 (36)
89 2h7b_A Core-binding factor, ML 21.2 63 0.0021 27.2 3.0 37 98-135 44-80 (105)
90 3g80_A Protein B2; RNA-binding 21.2 1.7E+02 0.006 23.8 5.5 41 99-142 37-77 (97)
91 1nkp_B MAX protein, MYC proto- 21.1 1.2E+02 0.0042 23.7 4.7 30 120-149 49-78 (83)
92 2ic9_A Nucleocapsid protein; h 20.8 54 0.0018 27.2 2.5 26 126-151 6-31 (96)
93 4h22_A Leucine-rich repeat fli 20.6 91 0.0031 26.2 3.9 16 120-135 32-47 (103)
94 1vq8_V 50S ribosomal protein L 20.6 2.9E+02 0.0098 21.3 6.6 26 118-143 12-37 (71)
95 1r73_A TM1492, 50S ribosomal p 20.4 2E+02 0.0069 21.8 5.6 26 118-143 9-34 (66)
96 1ek9_A Outer membrane protein 20.2 1.2E+02 0.0042 29.6 5.6 32 126-157 153-184 (428)
97 3nmd_A CGMP dependent protein 20.0 2.2E+02 0.0075 22.3 5.7 31 129-159 23-53 (72)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=9.6e-46 Score=379.56 Aligned_cols=246 Identities=24% Similarity=0.486 Sum_probs=194.2
Q ss_pred ccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCC
Q 011656 210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 289 (480)
Q Consensus 210 ~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG 289 (480)
|..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||
T Consensus 1 m~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G 79 (349)
T 3gke_A 1 MATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGG 79 (349)
T ss_dssp -CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTC
T ss_pred CCcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCC
Confidence 456789999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC-cc--ccccccccCCeeeecCcEEEcCCCCCCC--CCCCCCC--CCCCceEeeEEEEEEecchhhHhhhcCCC
Q 011656 290 KCEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEPPT--ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDL 362 (480)
Q Consensus 290 ~c~~iP~-~~--~~~~~L~~~pv~e~~G~VwV~~g~~~p~--~~lp~~~--~~~~~~~~~~~~~~~~~Nwk~~iEN~lD~ 362 (480)
+|+.+|+ .. ....+|++|||.+++|+||||+++++++ ..+|++. +.++|.+. ...++++||||+++||++|+
T Consensus 80 ~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~ 158 (349)
T 3gke_A 80 QCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDL 158 (349)
T ss_dssp CEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCG
T ss_pred CccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccc
Confidence 9999995 22 1357899999999999999999876421 2245542 23467665 45679999999999999999
Q ss_pred CCCCCCCccccccCCC--CCceeeeec------------C-CCCC-------CCcccCCceeeEEeCceeEEEEeeecCC
Q 011656 363 AHAPFTHTSTFAKGWS--VPSLVKFLT------------P-ASGL-------QGYWDPYPIDMEFRPPCMVLSTIGISKP 420 (480)
Q Consensus 363 yH~~~vH~~t~~~~~~--~p~~~~~~~------------p-~~~~-------~g~~~~~~~~~~f~~P~~~~~~~~~~~~ 420 (480)
||++++|+++++.... .+..++... + .+.+ .+.++.+ ..++|.+|+++.+++++..+
T Consensus 159 ~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~P~~~~~~~~~~~~ 237 (349)
T 3gke_A 159 GHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAW-NDIRWNKVSAMLNFIAVAPE 237 (349)
T ss_dssp GGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEE-EEEEEETTTEEEEEEEEEET
T ss_pred ccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeE-EEEEEECCEEEEEEEecccC
Confidence 9999999999987542 222111100 0 0000 0111111 35899999999988888776
Q ss_pred CCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCchhhc
Q 011656 421 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL 463 (480)
Q Consensus 421 g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~~l 463 (480)
|. +...+.++.++++|||+|+++|||||.++|||..+.
T Consensus 238 g~-----p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d 275 (349)
T 3gke_A 238 GT-----PKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD 275 (349)
T ss_dssp TS-----CGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC
T ss_pred CC-----CCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc
Confidence 64 123345678899999999999999999999998764
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5e-38 Score=326.39 Aligned_cols=242 Identities=17% Similarity=0.328 Sum_probs=176.7
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCC
Q 011656 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (480)
Q Consensus 211 ~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~ 290 (480)
...+.+.|++||+++||++|++++++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 34567799999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cccCCCccc--cccccccCCeeeecCcEEEcCCCCC-CC---CCCCCCCC--CCCceEeeEEEEEEe-cchhhHhhhcCC
Q 011656 291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 361 (480)
Q Consensus 291 c~~iP~~~~--~~~~L~~~pv~e~~G~VwV~~g~~~-p~---~~lp~~~~--~~~~~~~~~~~~~~~-~Nwk~~iEN~lD 361 (480)
|+.+|+.+. ...++++|||.+++|+||||++++. ++ ..+|.+.. ..+|.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998543 2468999999999999999997542 21 12344321 234554445577899 999999999999
Q ss_pred CCCCCCCCccccccC---CCCCceeeee----cCCCCCCC-cccC--CceeeEEeCceeEEEEeeecCCCCcCCCCcccc
Q 011656 362 LAHAPFTHTSTFAKG---WSVPSLVKFL----TPASGLQG-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 431 (480)
Q Consensus 362 ~yH~~~vH~~t~~~~---~~~p~~~~~~----~p~~~~~g-~~~~--~~~~~~f~~P~~~~~~~~~~~~g~~~g~~~~~~ 431 (480)
+||++++|+++...- .......... .+.-...+ ..+. ......|..|+.++..+....+|.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999754210 0000000100 11100000 0111 112357788997776655443331
Q ss_pred ceeEEEEEEEEeCCCCcEEEEEEeecCchh
Q 011656 432 ATHLHQLHVCLPSSRKKTRLLYRMSLDFAS 461 (480)
Q Consensus 432 ~~~~~~~~~~tP~t~~~Tr~f~~~~rnf~~ 461 (480)
......++.++|+++++|++++.+.+++.+
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~ 279 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPK 279 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCC
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCC
Confidence 112345677899999999999998877654
No 3
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=2.4e-38 Score=331.27 Aligned_cols=180 Identities=20% Similarity=0.286 Sum_probs=156.6
Q ss_pred ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 176 ~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
...+.+.++|+++|+.|++++|+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 17 ~~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 79 (409)
T 3n0q_A 17 HALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRA 79 (409)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred ccCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEe
Confidence 45677889999999999999874 5999999999998 69999999999999999999999999
Q ss_pred eecCCCCCCCCCCC-CcccCCeEeccccceEEcCCCCcccCCCcc----ccccccccCCeeeecCcEEEcCCCCCCCCCC
Q 011656 255 VQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 329 (480)
Q Consensus 255 ~~n~CpHRGapLs~-G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~----~~~~~L~~~pv~e~~G~VwV~~g~~~p~~~l 329 (480)
+.|+|||||++|+. |.++++.|+||||||+||.||+|+.+|+.. ..+.+|++|||++++|+|||++++++| ++
T Consensus 80 ~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l 157 (409)
T 3n0q_A 80 FHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DF 157 (409)
T ss_dssp EESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--Ch
Confidence 99999999999996 888889999999999999999999999753 246789999999999999999987654 34
Q ss_pred CCCCC----------CCCceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 330 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 330 p~~~~----------~~~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++
T Consensus 158 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~ 212 (409)
T 3n0q_A 158 ERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCR 212 (409)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGG
T ss_pred HHhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhh
Confidence 43321 1234454556788999999999999999999999998765
No 4
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=5.9e-38 Score=328.60 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=155.4
Q ss_pred cccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEe
Q 011656 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (480)
Q Consensus 177 ~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A~ 255 (480)
..+.+.++|+++|+.|++++|+ +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|+
T Consensus 20 ~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~ 82 (412)
T 3vca_A 20 SLEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAF 82 (412)
T ss_dssp CCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEe
Confidence 4667789999999999999874 5999999999998 699999999999999999999999999
Q ss_pred ecCCCCCCCCCC-CCcccCCeEeccccceEEcCCCCcccCCCcc----ccccccccCCeeeecCcEEEcCCCCCCCCCCC
Q 011656 256 QNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330 (480)
Q Consensus 256 ~n~CpHRGapLs-~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~----~~~~~L~~~pv~e~~G~VwV~~g~~~p~~~lp 330 (480)
.|+|||||++|+ .|.++++.|+||||||+||.+|+|+.+|+.. ..+.+|++|||++++|+|||++++++| +++
T Consensus 83 ~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~ 160 (412)
T 3vca_A 83 HNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQ 160 (412)
T ss_dssp ESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred cccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHH
Confidence 999999999998 6888889999999999999999999999753 235789999999999999999987654 344
Q ss_pred CCCC----------CCCceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 331 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 331 ~~~~----------~~~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
++++ ...+.+.....++++||||+++||++|+||++++|+++++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~ 214 (412)
T 3vca_A 161 TFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCR 214 (412)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHT
T ss_pred HHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhh
Confidence 4321 1234454556788999999999999999999999997754
No 5
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=6.5e-37 Score=323.41 Aligned_cols=171 Identities=20% Similarity=0.349 Sum_probs=142.0
Q ss_pred CChhhhh--hhhccCCcccccccCCCCcccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCC
Q 011656 184 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 261 (480)
Q Consensus 184 ts~~~~~--~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpH 261 (480)
+|+++|+ .|++.+| ++.|++||+++||++|++++++++|++|+|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~if-----------------~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGF-----------------INHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTCB-----------------CSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhhh-----------------hhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 8899999 7777765 46999999999999899999999999999999 69999999999999
Q ss_pred CCCCCCCCc--ccCCeEeccccceEEcC-CCCcccCCCccc----cccccccCCeeeecCcEEEcCCCCC----CCCCCC
Q 011656 262 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP 330 (480)
Q Consensus 262 RGapLs~G~--v~~~~l~CPYHGW~Fd~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~VwV~~g~~~----p~~~lp 330 (480)
||++|+.|. ++++.|+||||||+||. +|+|+.+|+.+. ...+|++|||.+++|+||||++++. .+.+++
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999997 46789999999999996 999999976431 2578999999999999999998642 111221
Q ss_pred CCCC----------------------CCCceEeeEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 011656 331 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 331 ~~~~----------------------~~~~~~~~~~~~~~~~Nwk~~iEN~lD~yH~~~vH~~t~~ 374 (480)
+.++ ..++.+. ....+++||||+++||++|+||+ ++|+++++
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~ 230 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTI 230 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHH
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhh
Confidence 1111 1344443 33568999999999999999999 99998875
No 6
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=1e-36 Score=316.03 Aligned_cols=232 Identities=22% Similarity=0.392 Sum_probs=172.2
Q ss_pred cccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCc--ccCCeEeccccceEEc
Q 011656 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (480)
Q Consensus 209 ~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~--v~~~~l~CPYHGW~Fd 286 (480)
.....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 104 (394)
T 3gcf_A 26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD 104 (394)
T ss_dssp HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence 33456789999999999999999999999999999999 69999999999999999999986 4678999999999999
Q ss_pred C-CCCcccCCCccc----cccccccCCeeeecCcEEEcCCCCCCCCCCCCCCC----CCCceEeeEEEEEEecchhhHhh
Q 011656 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (480)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~VwV~~g~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~Nwk~~iE 357 (480)
. +|+|+.+|+.+. .+.+|++|||++++|+|||+++++++ .++++.++ ..++.+.+ ...+++||||+++|
T Consensus 105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~E 182 (394)
T 3gcf_A 105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVE 182 (394)
T ss_dssp TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHh
Confidence 7 899999987542 35789999999999999999976432 23333221 24555543 46789999999999
Q ss_pred hcCCCCCCCCCCccccccC---CCCCceee--------eecCCCCCCCccc-----------------------------
Q 011656 358 NLLDLAHAPFTHTSTFAKG---WSVPSLVK--------FLTPASGLQGYWD----------------------------- 397 (480)
Q Consensus 358 N~lD~yH~~~vH~~t~~~~---~~~p~~~~--------~~~p~~~~~g~~~----------------------------- 397 (480)
|++|+||+ ++|+++++.. ...+..+. .. +.....|..+
T Consensus 183 N~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~ 260 (394)
T 3gcf_A 183 NGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEK 260 (394)
T ss_dssp HHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCB
T ss_pred hccccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCccc
Confidence 99999999 9999988642 11111110 01 1111111110
Q ss_pred CCceeeEEeCceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCc
Q 011656 398 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF 459 (480)
Q Consensus 398 ~~~~~~~f~~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf 459 (480)
.....+.+..|++.... .+..+ ++.++-..+|+++++++|+..+.+.+
T Consensus 261 ~~~~~~s~~lP~v~~v~-~~p~~-------------~~~~~~~~vPid~~~~~~~~~~~~~~ 308 (394)
T 3gcf_A 261 KVAAQVSVWLPGVLKVD-PFPDP-------------TLIQYEFYVPISETQHEYFQVLQRKV 308 (394)
T ss_dssp CCCSEEEEETTTEEEEE-SCSST-------------TCEEEEEEEESSSSCEEEEEEEEEEC
T ss_pred ccceeEEEEecCeeEec-cCCCC-------------CeEEEEEEeeccCCeEEEEEEEEEEC
Confidence 11234677778776554 33222 24566777999999999998887544
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1e-36 Score=315.37 Aligned_cols=233 Identities=21% Similarity=0.424 Sum_probs=173.4
Q ss_pred cccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCc--ccCCeEeccccceEEc
Q 011656 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (480)
Q Consensus 209 ~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~--v~~~~l~CPYHGW~Fd 286 (480)
.....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 44556788999999999999999999999999999999 69999999999999999999986 4678999999999999
Q ss_pred C-CCCcccCCCccc----cccccccCCeeeecCcEEEcCCCCCCCCCCCCCCC----CCCceEeeEEEEEEecchhhHhh
Q 011656 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (480)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~VwV~~g~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~Nwk~~iE 357 (480)
. +|+|+.+|+.+. ...+|++|||++++|+|||+++++++ .++++.++ ..++.+.+ ...+++||||+++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence 7 999999887542 35789999999999999999976432 23333221 24565544 46789999999999
Q ss_pred hcCCCCCCCCCCccccccC---CCCCce---------eeeecCCCCCCCcccC---------------------------
Q 011656 358 NLLDLAHAPFTHTSTFAKG---WSVPSL---------VKFLTPASGLQGYWDP--------------------------- 398 (480)
Q Consensus 358 N~lD~yH~~~vH~~t~~~~---~~~p~~---------~~~~~p~~~~~g~~~~--------------------------- 398 (480)
|++|+||+ ++|+++++.. ...|.. .....+.....|.++.
T Consensus 180 N~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKM 258 (389)
T ss_dssp HHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBC
T ss_pred hcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcc
Confidence 99999999 9999987632 111110 1011111222232110
Q ss_pred CceeeEEeCceeEEEEeeecCCCCcCCCCccccceeEEEEEEEEeCCCCcEEEEEEeecCc
Q 011656 399 YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF 459 (480)
Q Consensus 399 ~~~~~~f~~P~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~tP~t~~~Tr~f~~~~rnf 459 (480)
....+.+..|++.... .+..+ ++.++-..+|+++++|.|+..+.+.+
T Consensus 259 ~~~~~s~~lP~v~~v~-~~~~~-------------~~~~~~~~vpi~~~~~~y~~~~~~~~ 305 (389)
T 3gkq_A 259 VAISISVWLPGVLKVD-PFPDP-------------TLTQFEWYVPIDEGHHLYLQMLGRRV 305 (389)
T ss_dssp CCCEEEEETTTEEEEE-SCSST-------------TCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cceeEEEEecCeeEec-cCCCC-------------CeEEEEEEeeccCCeEEEEEEEEEEc
Confidence 1134677788876655 33222 25566777999999999998887554
No 8
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=7.4e-37 Score=317.74 Aligned_cols=162 Identities=24% Similarity=0.459 Sum_probs=135.9
Q ss_pred cccccccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcc--cCCeEeccccceEEc
Q 011656 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS 286 (480)
Q Consensus 209 ~~~~~~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v--~~~~l~CPYHGW~Fd 286 (480)
.....+++.|++||+++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+||
T Consensus 20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~ 98 (392)
T 2de6_A 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR 98 (392)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence 345567899999999999998999999999999999995 99999999999999999999875 468999999999999
Q ss_pred C-CCCcccCCCccc----cccccccCCeeeecCcEEEcCCCCCCCCCCCCCC----CCCCceEeeEEEEEEecchhhHhh
Q 011656 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (480)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~VwV~~g~~~p~~~lp~~~----~~~~~~~~~~~~~~~~~Nwk~~iE 357 (480)
. +|+|+.+|+.+. .+.+|++|||++++|+||||+++++++ ++++.+ ...++... ....+++||||+++|
T Consensus 99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~E 176 (392)
T 2de6_A 99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVE 176 (392)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhH
Confidence 6 999999976432 357899999999999999999764322 232211 12456654 346789999999999
Q ss_pred hcCCCCCCCCCCccccc
Q 011656 358 NLLDLAHAPFTHTSTFA 374 (480)
Q Consensus 358 N~lD~yH~~~vH~~t~~ 374 (480)
|++|+||+ ++|+++++
T Consensus 177 N~~D~~H~-~~H~~~~~ 192 (392)
T 2de6_A 177 NGFDPSHI-YIHKDSIL 192 (392)
T ss_dssp HHHCGGGG-GGGTTCHH
T ss_pred hcchhhhh-hhhcchhc
Confidence 99999999 99998764
No 9
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=3.3e-37 Score=326.65 Aligned_cols=181 Identities=18% Similarity=0.271 Sum_probs=156.4
Q ss_pred ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 176 ~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
..++...++|+++|+.|++++|+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 33 ~~~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A 95 (457)
T 3gzx_A 33 GKLDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKV 95 (457)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEE
Confidence 35778899999999999999874 5999999999997 69999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCc-ccCCeEeccccceEEcCCCCcccCCCcc--------------ccccccccCCeeeecCcEEEc
Q 011656 255 VQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIW 319 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~-v~~~~l~CPYHGW~Fd~dG~c~~iP~~~--------------~~~~~L~~~pv~e~~G~VwV~ 319 (480)
|.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ +.+.+|++|||++++|+||||
T Consensus 96 ~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~ 175 (457)
T 3gzx_A 96 FLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFAN 175 (457)
T ss_dssp EESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEE
T ss_pred EeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEe
Confidence 9999999999999986 6788999999999999999999999853 124679999999999999999
Q ss_pred CCCCCCCCCCCCCCCC-------------CCceEe-eEEEEEEecchhhHhhhc-CCCCCCC-CCCcccccc
Q 011656 320 PGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAK 375 (480)
Q Consensus 320 ~g~~~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~Nwk~~iEN~-lD~yH~~-~vH~~t~~~ 375 (480)
+++++| ++++++++ .++++. +...++++||||+++||+ +|+||++ ++|.++++.
T Consensus 176 ~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~ 245 (457)
T 3gzx_A 176 WDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLA 245 (457)
T ss_dssp SCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHH
T ss_pred cCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhc
Confidence 987654 35454331 245554 256788999999999999 8999999 999987654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=1.3e-36 Score=320.77 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=154.2
Q ss_pred ccc-CCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 177 ~~~-~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
.++ .+.++|+++|+.|++++|. +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 456 7889999999999999874 5899999999998 69999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCCCcc--------ccccccccCC-eeeecCcEEEcCCCCC
Q 011656 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 324 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP~~~--------~~~~~L~~~p-v~e~~G~VwV~~g~~~ 324 (480)
+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.+ ..+.+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999875 578999999999999999999999743 1246899998 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCceEe-eEEEEEEecchhhHhhhc-CCCCCCCCCCcccccc
Q 011656 325 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (480)
Q Consensus 325 p~~~lp~~~~------------~~~~~~~-~~~~~~~~~Nwk~~iEN~-lD~yH~~~vH~~t~~~ 375 (480)
| +++++++ +.++.+. +...++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 3443322 2345555 355778999999999999 7999999999877654
No 11
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=2.2e-36 Score=319.86 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=154.2
Q ss_pred ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 176 ~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
..++.+.++|+++|+.|++++|. +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 75 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRA 75 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CccCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35778899999999999999874 5899999999998 69999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCCCccc--------cccccccCCeeeecCcEEEcCCCCCC
Q 011656 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP~~~~--------~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
+.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|+.+. .+.+|++|+|.+++|+|||++++++|
T Consensus 76 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 76 FINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp EESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred EeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 99999999999999865 6789999999999999999999997531 24689999999999999999987654
Q ss_pred CCCCCCCCC-------------CCCceEe-eEEEEEEecchhhHhhhc-CCCCCCCCCCccccc
Q 011656 326 TATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 374 (480)
Q Consensus 326 ~~~lp~~~~-------------~~~~~~~-~~~~~~~~~Nwk~~iEN~-lD~yH~~~vH~~t~~ 374 (480)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 --SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp --CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred --CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3444321 2345554 355778999999999999 799999999976664
No 12
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=1.2e-35 Score=315.58 Aligned_cols=181 Identities=19% Similarity=0.324 Sum_probs=152.6
Q ss_pred ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 176 ~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
..++.+.++|+++|+.|++++|+ +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 21 ~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a 83 (470)
T 2b1x_A 21 WTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRG 83 (470)
T ss_dssp CEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 45778899999999999999874 5899999999998 58999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCccc-CCeEeccccceEEcCCCCcccCCCccc--------cccccccCC-eeeecCcEEEcCCCCC
Q 011656 255 VQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDEP 324 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v~-~~~l~CPYHGW~Fd~dG~c~~iP~~~~--------~~~~L~~~p-v~e~~G~VwV~~g~~~ 324 (480)
+.|+|||||++|+.|... ++.|+||||||+||.||+|+.+|+.+. .+.+|.++| +++++|+|||++++++
T Consensus 84 ~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~ 163 (470)
T 2b1x_A 84 HLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHA 163 (470)
T ss_dssp EESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTC
T ss_pred EecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCC
Confidence 999999999999998765 479999999999999999999998531 246788995 6667999999998765
Q ss_pred CCCCCCCCCC-------------CCCceEee-EEEEEEecchhhHhhhc-CCCCCCCCCCcccccc
Q 011656 325 PTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (480)
Q Consensus 325 p~~~lp~~~~-------------~~~~~~~~-~~~~~~~~Nwk~~iEN~-lD~yH~~~vH~~t~~~ 375 (480)
| +++++++ ..++++.. ...++++||||+++||+ +|+||++++|+++++.
T Consensus 164 ~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~~ 227 (470)
T 2b1x_A 164 D--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVEL 227 (470)
T ss_dssp C--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHH
T ss_pred C--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhhc
Confidence 4 3443322 23455544 45788999999999999 9999999999987643
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=1.8e-34 Score=305.80 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=151.0
Q ss_pred ccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 011656 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (480)
Q Consensus 176 ~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~l~G~~vVv~R~~dG~v~A 254 (480)
..++.+.++|+++|+.|++++|. +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a 93 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRV 93 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35677789999999999999874 5899999999998 58899999999999999999999999
Q ss_pred eecCCCCCCCCCCCCcc-cCCeEeccccceEEcCCCCcccCCCcc-------ccccccccCCeeeecCcEEEcCCCCCCC
Q 011656 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (480)
Q Consensus 255 ~~n~CpHRGapLs~G~v-~~~~l~CPYHGW~Fd~dG~c~~iP~~~-------~~~~~L~~~pv~e~~G~VwV~~g~~~p~ 326 (480)
+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.+ ..+.+|++|+|.+++|+|||++++++|
T Consensus 94 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p- 172 (460)
T 1uli_A 94 FLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP- 172 (460)
T ss_dssp EESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC-
T ss_pred EeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC-
Confidence 99999999999999865 568999999999999999999999753 124679999999999999999987654
Q ss_pred CCCCCCCC-------------CCCceEe-eEEEEEEecchhhHhhhc-CCCCCC-CCCCcccc
Q 011656 327 ATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 373 (480)
Q Consensus 327 ~~lp~~~~-------------~~~~~~~-~~~~~~~~~Nwk~~iEN~-lD~yH~-~~vH~~t~ 373 (480)
+++++++ +.++.+. ....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 -~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 -DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp -CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred -CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 3333322 1234442 345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=9.9e-27 Score=198.13 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=94.5
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~iP 295 (480)
.|++||.++||++|+++.+.+.|++++|+| .+|+++|+.|+|||||++|+.|.+.++.|+||||||+||. +|+|+.+|
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P 81 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 81 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 699999999999999999999999999999 7999999999999999999999988899999999999996 99999999
Q ss_pred CccccccccccCCeeeecCcEEEcCC
Q 011656 296 STQLRNVKIKSLPCFEQEGMIWIWPG 321 (480)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~VwV~~g 321 (480)
+. .+|++||+++++|.|||+++
T Consensus 82 ~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 82 VT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp CC----SCCCEECEEEETTEEEEECC
T ss_pred CC----CCCCEEeEEEECCEEEEEcC
Confidence 74 47999999999999999873
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=1.3e-26 Score=200.05 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=96.1
Q ss_pred ceEEeeecCCCCCCCeEEEEE-cCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l-~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~i 294 (480)
.|++|+.++||++|+++.+++ .|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 599999999999999999999 99999999988999999999999999999999988899999999999997 599998
Q ss_pred CCccccccccccCCeeeecCcEEEcCCCCCC
Q 011656 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
|. ...|++||+++++|+|||++++.++
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 65 3579999999999999999976543
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=7.2e-27 Score=200.78 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCee-EEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcccC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~-vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~~i 294 (480)
.|++||.++||++|+++.+++.|++ ++|+|+ +|+++|+.|+|||||++|+.|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999999999999999 999998 999999999999999999999888899999999999995 9999999
Q ss_pred CCccccccccccCCeeeecCcEEEcCCCC
Q 011656 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
|.. .+|++||+++++|.|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 5799999999999999998754
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=2e-26 Score=199.37 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=95.6
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCC-cccCCeEeccccceEEcC-CCCcccC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 294 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G-~v~~~~l~CPYHGW~Fd~-dG~c~~i 294 (480)
.|++||.++||++|+++.+.+.|++++|+|+ +|+++|+.|+|||||++|+.| .++++.|+||||||+||. ||+|+.+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999999999999999999999998 999999999999999999998 788899999999999997 8999999
Q ss_pred CCccccccccccCCeeeecCcEEEcCCCC
Q 011656 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
|+. .+|++||+++++|+|||+++++
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 973 5799999999999999998654
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=7.7e-27 Score=203.37 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.1
Q ss_pred cCceEEeeecCCCCCCCeEEEEEcCe-eEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC-CCCcc
Q 011656 215 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 292 (480)
Q Consensus 215 ~~~W~~V~~~~eL~~g~~~~v~l~G~-~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~-dG~c~ 292 (480)
.+.|++||.++||++|+++.+.+.|+ +++|+|+ +|+++|+.|+|||||++|+.|.+.++.|+||||||+||. +|+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 46799999999999999999999999 9999998 999999999999999999999988899999999999995 99999
Q ss_pred cCCCccccccccccCCeeeecCcEEEcCCCC
Q 011656 293 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 293 ~iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
.+|+. .+|++||+++++|.|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99974 5799999999999999998654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=1.6e-26 Score=198.06 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=95.1
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEc-CCCCcccCC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd-~dG~c~~iP 295 (480)
+|++||.++||++|+++.+.+.|++|+|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+|| .+|+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 599999999999999999999998889999999999999 599999999
Q ss_pred CccccccccccCCeeeecCcEEEcCCC
Q 011656 296 STQLRNVKIKSLPCFEQEGMIWIWPGD 322 (480)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~VwV~~g~ 322 (480)
+. ..|++||+++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 73 579999999999999999864
No 20
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=1.2e-25 Score=197.71 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCC--cccCCeEeccccceEEc-CCCCccc
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEK 293 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G--~v~~~~l~CPYHGW~Fd-~dG~c~~ 293 (480)
.|++||.++||++|+++.+.+.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+|| .+|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 88889999999999999 5999999
Q ss_pred CCCccccccccccCCeeeecCcEEEcCCCC
Q 011656 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
+|+. .+|++||+++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9974 4799999999999999998654
No 21
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=1.1e-25 Score=194.82 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCC-cEEEeecCCCCCCC-CCCCCccc---CC-eEeccccceEEcC-CC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 289 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG-~v~A~~n~CpHRGa-pLs~G~v~---~~-~l~CPYHGW~Fd~-dG 289 (480)
.|+.||.++||++|+++.+.+.|++++|||+.+| +++|+.|+|||||+ +|+.|.+. ++ .|+||||||+||. ||
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 4999999999999999999999999999998899 69999999999999 79999875 23 8999999999997 99
Q ss_pred CcccCCCccccccccccCCeeeecCcEEEcCC
Q 011656 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (480)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g 321 (480)
+|+..|. ..|++||+++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999987 57999999999999999874
No 22
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=7.7e-26 Score=198.18 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.0
Q ss_pred CceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCC-CCCCCcccCC----eEeccccceEEcC-CC
Q 011656 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 289 (480)
Q Consensus 216 ~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGa-pLs~G~v~~~----~l~CPYHGW~Fd~-dG 289 (480)
..|++||.++||++|+++.+.+.|++++|+|+.+|+++|+.|+|||||+ +|+.|.+.+. .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 4799999999999999999999999999999889999999999999999 8999987542 8999999999997 99
Q ss_pred CcccCCCccccccccccCCeeeecCcEEEcCCCC
Q 011656 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (480)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~ 323 (480)
+|+..|. ..|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999987 4799999999999999998653
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=3.3e-25 Score=197.26 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=94.4
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCC-cEEEeecCCCCCCC-CCCCCccc---C-CeEeccccceEEcC-CC
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 289 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG-~v~A~~n~CpHRGa-pLs~G~v~---~-~~l~CPYHGW~Fd~-dG 289 (480)
.|+.||.++||++|+++.+++.|++++|+|+.+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998788 99999999999999 59999875 2 38999999999997 99
Q ss_pred CcccCCCccccccccccCCeeeecCcEEEcCCCCC
Q 011656 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 324 (480)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~~ 324 (480)
+|+.+|+ .+|++|||++++|.|||++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCC
Confidence 9999997 57999999999999999997654
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.2e-25 Score=195.99 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=88.9
Q ss_pred CceEEeeecCCCCCCCeEEEEEc-CeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccC-----CeEeccccceEEc-CC
Q 011656 216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYS-TD 288 (480)
Q Consensus 216 ~~W~~V~~~~eL~~g~~~~v~l~-G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~-----~~l~CPYHGW~Fd-~d 288 (480)
+.|++||.++||++|..+.+.+. |++|+|||..+|+++|++|+|||||++|+.|.+.+ ..|+||||||+|| .|
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 47999999999999988888885 79999999999999999999999999998765432 3599999999999 69
Q ss_pred CCcccCCCccccccccccCCee-eecCcEEEcCC
Q 011656 289 GKCEKMPSTQLRNVKIKSLPCF-EQEGMIWIWPG 321 (480)
Q Consensus 289 G~c~~iP~~~~~~~~L~~~pv~-e~~G~VwV~~g 321 (480)
|+|+..|. .++++|||+ |.+|.|||.+.
T Consensus 88 G~~~~~p~-----~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPR-----VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTT-----CBCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCC-----CccceEEEEEEeCCEEEEecC
Confidence 99999987 479999997 56899999753
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=1.3e-25 Score=205.84 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=95.3
Q ss_pred ccCceEEeeecCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEeecCCCCCCCCCCCCcccC----CeEeccccceEEcC-C
Q 011656 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 288 (480)
Q Consensus 214 ~~~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~dG~v~A~~n~CpHRGapLs~G~v~~----~~l~CPYHGW~Fd~-d 288 (480)
..+.|++||.++||++|+++.+.++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||. +
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 356899999999999899999999999999999 59999999999999999999998753 68999999999997 9
Q ss_pred CCccc--C-CCccc-------cccccccCCeeeecCcEEEcCCCCC
Q 011656 289 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (480)
Q Consensus 289 G~c~~--i-P~~~~-------~~~~L~~~pv~e~~G~VwV~~g~~~ 324 (480)
|+|+. + |.... ...+|++|||++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 3 63211 1367999999999999999998754
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.86 E-value=2.6e-22 Score=187.58 Aligned_cols=144 Identities=14% Similarity=0.128 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhhccccccCcccccCCCCCChhhhhhhhccCCcccccccCCCCcccccccCceEEeeecCCCCCCCeEE
Q 011656 155 LAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVP 234 (480)
Q Consensus 155 ~~~~e~~~r~~~l~~~~a~~~~~~~~~~ats~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~~g~~~~ 234 (480)
-..|.++.||.||+++.++.+..+.+....-. .+.+.. ..... +.-.+..||.++||++|+++.
T Consensus 4 ~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~-----~~~~~~--------~~~~~---~~~p~~~v~~~~dL~~g~~~~ 67 (175)
T 4aay_B 4 CQNMVDIGRRQFLRGGALAAAGATAAVFGVGA-----PQARAA--------TAAAG---VEYPANRLANISELTLNEPLD 67 (175)
T ss_dssp -----------------------------------------------------CCS---CCCCCEEEEEGGGCBBTBCEE
T ss_pred chhhccccHHHHhhhhHHhhhheeEecccccc-----cccccc--------ccCcc---cCCCcceEEEHHHCCCCCEEE
Confidence 35677899999999766664432211111000 000000 00011 112344799999999999999
Q ss_pred EEEcC--eeEEEEEc---------CCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEEcC--CCCcccCCCccccc
Q 011656 235 FDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRN 301 (480)
Q Consensus 235 v~l~G--~~vVv~R~---------~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~--dG~c~~iP~~~~~~ 301 (480)
+++.+ ++++|+|. .+|+++|++|+|||+|++|++| .+++.|+||||||+||. +|+|+..|+.
T Consensus 68 v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~---- 142 (175)
T 4aay_B 68 VAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT---- 142 (175)
T ss_dssp EESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS----
T ss_pred EEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC----
Confidence 99974 58999997 5899999999999999999998 57789999999999996 5999999983
Q ss_pred cccccCCeee-ecCcEEEc
Q 011656 302 VKIKSLPCFE-QEGMIWIW 319 (480)
Q Consensus 302 ~~L~~~pv~e-~~G~VwV~ 319 (480)
..|++||+++ .+|.||+-
T Consensus 143 ~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp SCCCBEEEEECTTSEEEEE
T ss_pred CCcCEEEEEEEcCCEEEEE
Confidence 4699999998 69999974
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.84 E-value=4.8e-21 Score=170.37 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=88.5
Q ss_pred ceEEeeecCCCCCCCeEEEEEcCeeEEEEEcC--------------------------CCcEEEeecCCCCCCCCCCCCc
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 270 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~--------------------------dG~v~A~~n~CpHRGapLs~G~ 270 (480)
.|..+ ..++|++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46666 88999999999999999999999963 8999999999999999999998
Q ss_pred ccCCeEeccccceEEcCCCCcccCCCccccccccccCCeee-ecCcEEE
Q 011656 271 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (480)
Q Consensus 271 v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~VwV 318 (480)
++++.|+||||||+||.+|+|+..|+. ..|+.||+.+ .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888899999999999999999999874 4799999998 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.82 E-value=4.9e-21 Score=172.61 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=88.8
Q ss_pred cCceEEeee-cCCCCCCCeEEEE-EcCeeEEEEEcCCCcE--EEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCC
Q 011656 215 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (480)
Q Consensus 215 ~~~W~~V~~-~~eL~~g~~~~v~-l~G~~vVv~R~~dG~v--~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~ 290 (480)
...|+.++. .+||++|..+.+. +.|++++++|+.+|++ +|++|+|||||++|+.|. .++.|+||||||+||.+|+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence 356777877 8999987766665 5788888888889999 999999999999999887 4689999999999999999
Q ss_pred cccCCCccccccccccCCeeeecCcEEEcCC
Q 011656 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (480)
Q Consensus 291 c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g 321 (480)
|+..|.. ..|++||+++.+|.|||.+-
T Consensus 98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 98 VVRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 9999973 57999999999999999863
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.82 E-value=2e-20 Score=167.17 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=87.7
Q ss_pred ceEEeeecCCCCCCCeEEEEEc--CeeEEEEEcC---------CCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEE
Q 011656 217 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (480)
Q Consensus 217 ~W~~V~~~~eL~~g~~~~v~l~--G~~vVv~R~~---------dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~F 285 (480)
.|+.||..+||++|+++.+.+. +++++|+|.. +|+++|+.|+|||+|++|+.+ ..++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 4889999999999999999985 8999999975 899999999999999999974 466899999999999
Q ss_pred cC--CCCcccCCCccccccccccCCeeee--cCcEEEc
Q 011656 286 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (480)
Q Consensus 286 d~--dG~c~~iP~~~~~~~~L~~~pv~e~--~G~VwV~ 319 (480)
|. +|+|+..|+. ..|++|++++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 97 8999999874 46999999988 6789985
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=8.9e-21 Score=169.84 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=81.8
Q ss_pred eecCCCCCCCeEEEE-EcCeeEEEEEcCCCc--EEEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCcc
Q 011656 222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298 (480)
Q Consensus 222 ~~~~eL~~g~~~~v~-l~G~~vVv~R~~dG~--v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~ 298 (480)
...+++++|+...+. +.|.+.+++|+.+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 456678888776665 345566666667999 9999999999999999987 56899999999999999999999874
Q ss_pred ccccccccCCeee-ecCcEEEcCCCC
Q 011656 299 LRNVKIKSLPCFE-QEGMIWIWPGDE 323 (480)
Q Consensus 299 ~~~~~L~~~pv~e-~~G~VwV~~g~~ 323 (480)
.+|++||+.+ .+|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 4799999999 999999987653
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.74 E-value=6e-18 Score=159.35 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=84.7
Q ss_pred CceEEeeecCCCCCCCeEEEEEcCeeEEEEEcC--------------------------CCcEEEeecCCCCCCCCCCCC
Q 011656 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLG 269 (480)
Q Consensus 216 ~~W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~~--------------------------dG~v~A~~n~CpHRGapLs~G 269 (480)
..|+.| ..++|++|+.+++.+.|++++|+|.. +|+++|+.|+|||+||.+..+
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~ 139 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGE 139 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccC
Confidence 369899 59999999999999999999999963 699999999999999964443
Q ss_pred cccCCeEeccccceEEcCCCCcccCCCccccccccccCCeeeecCcEEE
Q 011656 270 SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (480)
Q Consensus 270 ~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~VwV 318 (480)
..+.+.|.||||||+||.+|+|+..|+. ..|+.+|+.+.+|.|||
T Consensus 140 ~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 140 AGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp ETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 3356899999999999999999999873 46888888888999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.73 E-value=1.4e-17 Score=157.04 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=83.8
Q ss_pred eEEeeecCCCCCCCeEEEEEcCeeEEEEEc----------------------------------------CCCcEEEeec
Q 011656 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 257 (480)
Q Consensus 218 W~~V~~~~eL~~g~~~~v~l~G~~vVv~R~----------------------------------------~dG~v~A~~n 257 (480)
|..+ ..++|++|+.+.+...|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 7899999999999999999999992 2899999999
Q ss_pred CCCCCCCCCCCC-cccCCeEeccccceEEcCCCCcccCCCccccccccccCCeeee-cCcEEE
Q 011656 258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (480)
Q Consensus 258 ~CpHRGapLs~G-~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~-~G~VwV 318 (480)
+|||+|++|+.+ .++.+.|.||||||+||.+|+|+..|.. ..|+.||+.+. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 999999999983 4444899999999999999999999874 47999999875 688987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.73 E-value=7.4e-18 Score=160.08 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=85.9
Q ss_pred eeecCCCCCCCeEEEEEcCeeEEEEEc--------------------------CCCcEEEeecCCCCCCCCCCCCcccCC
Q 011656 221 VAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNEG 274 (480)
Q Consensus 221 V~~~~eL~~g~~~~v~l~G~~vVv~R~--------------------------~dG~v~A~~n~CpHRGapLs~G~v~~~ 274 (480)
.+..++|++|+.+.+...|++++|+|. .+|+++|+.|+|||+||+|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 478899999999999999999999985 289999999999999999999887778
Q ss_pred eEeccccceEEcCCCCcccCCCccccccccccCCeee-ecCcEEE
Q 011656 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (480)
Q Consensus 275 ~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~VwV 318 (480)
.|.||||||+||.+|+++.+|+. ..|..||+.+ .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 99999999999999999999874 4799999998 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.72 E-value=1.4e-17 Score=150.48 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=83.4
Q ss_pred eecCCCCCCCeEEEEEcCeeEEEEEc----------------------------------------CCCcEEEeecCCCC
Q 011656 222 AFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQNTCAH 261 (480)
Q Consensus 222 ~~~~eL~~g~~~~v~l~G~~vVv~R~----------------------------------------~dG~v~A~~n~CpH 261 (480)
...++|++|+.+++...|+||.|.|. .+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 46788999999999999999999984 17899999999999
Q ss_pred CCCCCCC-CcccCCeEeccccceEEcCCCCcccCCCccccccccccCCeee-ecCcEEE
Q 011656 262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (480)
Q Consensus 262 RGapLs~-G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~VwV 318 (480)
+|++|+. +.++++.|.||||||+||.+|+|+..|+. ..|..||+.+ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 77667899999999999999999999874 4699999998 7899987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.72 E-value=9.5e-18 Score=155.31 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=80.8
Q ss_pred ecCCCCCCCeEEEEEcCee-------------EEEEEc-------------CCCcEEEeecCCCCCCCCCCCCcccCCeE
Q 011656 223 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (480)
Q Consensus 223 ~~~eL~~g~~~~v~l~G~~-------------vVv~R~-------------~dG~v~A~~n~CpHRGapLs~G~v~~~~l 276 (480)
..++|++|+.+.+..-|.+ +++.|- .+| ++||.|+|||+|++|+.|.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 5678888887777664443 555664 345 9999999999999999888888899
Q ss_pred eccccceEEcC-CCC-cccCCCccccccccccCCeeeecCcEEEcCCCCCC
Q 011656 277 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (480)
Q Consensus 277 ~CPYHGW~Fd~-dG~-c~~iP~~~~~~~~L~~~pv~e~~G~VwV~~g~~~p 325 (480)
.||||||+||. +|. |+.+|+. ..|+.||+.+.+|.|||+++...+
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 99999999996 486 9999873 479999999999999999876544
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.70 E-value=2.8e-18 Score=160.52 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=82.0
Q ss_pred cCCCCCCCeEEEE-EcCeeEEEEEcCCCcE--EEeecCCCCCCCCCCCCcccCCeEeccccceEEcCCCCcccCCCcccc
Q 011656 224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (480)
Q Consensus 224 ~~eL~~g~~~~v~-l~G~~vVv~R~~dG~v--~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~Fd~dG~c~~iP~~~~~ 300 (480)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+..|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888887776 7789999999899998 999999999999999887 45899999999999999999999873
Q ss_pred ccccccCCeeeecCcEEEcC
Q 011656 301 NVKIKSLPCFEQEGMIWIWP 320 (480)
Q Consensus 301 ~~~L~~~pv~e~~G~VwV~~ 320 (480)
..|+.||+.+.+|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 4799999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.59 E-value=8.7e-17 Score=153.63 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEEcCeeEEEEEcC------------CCcEEEeecCCCCCCCCCCCCcc-----------cCCeEeccccceEEcCC-
Q 011656 233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 288 (480)
Q Consensus 233 ~~v~l~G~~vVv~R~~------------dG~v~A~~n~CpHRGapLs~G~v-----------~~~~l~CPYHGW~Fd~d- 288 (480)
+.+++.+.+++++|+. +|+++|+.|+|||+|++|+.|.+ .++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4577888888888876 79999999999999999998853 56899999999999976
Q ss_pred -CCcccCCCccccccccccCCeeee--cCcEEEcCC
Q 011656 289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 321 (480)
Q Consensus 289 -G~c~~iP~~~~~~~~L~~~pv~e~--~G~VwV~~g 321 (480)
|+|+..|+. ..|+.|++.+. +|.||+...
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence 799998874 46888888766 899999753
No 38
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=79.85 E-value=4.4 Score=32.17 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=49.1
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011656 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (480)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~ 150 (480)
-||-.|.=+-.|-.-=.|+++-||..+- .-|..|+.|.+.|.+...++-..||+|+.
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998877777777899999997653 46789999999999999999999999974
No 39
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=73.41 E-value=4.8 Score=32.12 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=48.9
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011656 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (480)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~ 150 (480)
-||-.|+=+-.|-..=.++++-||..+- .-|..|+.|.+.|.+...++-..||||+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998877777777899999998753 45788999999999999999999999974
No 40
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=73.40 E-value=9.1 Score=35.92 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=37.6
Q ss_pred CceeehhhHHHHhh-------hcceeecccc------c--hhHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 011656 69 GKFLDVNQALEVAR-------YDIQYCDWRA------R--QDVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (480)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~------~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 132 (480)
-+|-.+|+|.++++ ||.+.-.+.. . .+.| .+|++++.+.++=+. ..+..|++++.+.++
T Consensus 91 ~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~ 165 (207)
T 3bvo_A 91 KHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQK 165 (207)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHH
Confidence 36789999999985 4433222211 1 2355 499999999986543 225556666666555
Q ss_pred HH
Q 011656 133 DL 134 (480)
Q Consensus 133 ~~ 134 (480)
++
T Consensus 166 ~~ 167 (207)
T 3bvo_A 166 EF 167 (207)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=67.90 E-value=9.8 Score=34.52 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=37.7
Q ss_pred CceeehhhHHHHhh-------hcceeeccccch--------hHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 011656 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (480)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 132 (480)
-+|--+|+|.+++. ||.+.--..... +.| .+|++++++.|+-+. .+..++..|++++...++
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 47999999999986 343322222221 245 499999999987542 222235555555554433
Q ss_pred HH
Q 011656 133 DL 134 (480)
Q Consensus 133 ~~ 134 (480)
++
T Consensus 127 ~~ 128 (171)
T 1fpo_A 127 TR 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 42
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=66.19 E-value=23 Score=32.44 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=29.9
Q ss_pred cCCceeehhhHHHHhh-------hccee-eccccch------------h-HHHHHHHHHHHHHhh
Q 011656 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVL 110 (480)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------~-~~~~~~~~~~~~~~l 110 (480)
..-+|..+|+|.+++. ||.+- -.....+ + |..+|++|+++.|.=
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~ 118 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMD 118 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhcc
Confidence 6778999999999975 45543 1221111 2 338899999999863
No 43
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=51.34 E-value=19 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~ 156 (480)
||..|.|++..|.++|..+..+--.....+.++|..+.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999998888888888888887654
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.10 E-value=41 Score=27.09 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHhhhh
Q 011656 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAE--------------LQEDLAQAHRQVHISEARVATALDKL 155 (480)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------l~~~~~~a~~~~~~se~Rv~~aLd~~ 155 (480)
..|..||-..+..++-=++=|..||.+-.. |++|..+-.++-+.-+.|+..-|+|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667766666666655556666666555 55555556666666677777777764
No 45
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=50.95 E-value=39 Score=30.53 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=46.3
Q ss_pred CceeehhhHHHHhhh-------cceeeccccch------h---HHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHH
Q 011656 69 GKFLDVNQALEVARY-------DIQYCDWRARQ------D---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQ 131 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~---~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~ 131 (480)
-+|.-+|+|.++++- |.+-....... | +..+|++++++.|+-+. .+ ..++..|++++...+
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 578999999999764 43332232222 2 33889999999987432 11 122444444444443
Q ss_pred ----HHHHHHHHHHhhhHHHHHHHhhhhHHHHHH
Q 011656 132 ----EDLAQAHRQVHISEARVATALDKLAYMEAL 161 (480)
Q Consensus 132 ----~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~ 161 (480)
+++.+|=.+-...+| ...+.++.+++++
T Consensus 130 ~~~~~~l~~~~~~~d~~~A--~~~~~kL~f~~kl 161 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLAA--ADQIRKLKFIAKL 161 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHH
Confidence 333333332222222 2345566666544
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.00 E-value=20 Score=26.49 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
+..||.|+++||.++..-..+.--..+|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888777777766666666553
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.72 E-value=52 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHHHHHhhChhhhh---ccchhhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHhhhhHHHHH
Q 011656 101 LLHEKVVEVLNPLARD---YKSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYMEA 160 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~a~~~~~-----------~se~Rv~~aLd~~~~~e~ 160 (480)
.+.+++.+.|+....+ ..-..-|++||.++|.-++++..|-. .+|+.|++.+.|+-++|.
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444333 12234589999999999999887743 467888899988888874
No 48
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=41.13 E-value=47 Score=26.92 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 120 ~~~~~~~~~~l~~~----------~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
+..|+.+++.|+.. +..++.+++..-..+.++|+.++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766 888999999999999999998887
No 49
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.79 E-value=50 Score=30.64 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+|.-|..+.++..+=..-+.+...|+..||++++.+.+|....+.+.++++..+--.+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~ 75 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIK 75 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHH
Confidence 4444444444444444445577778888888888888888877777776655544433
No 50
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.88 E-value=27 Score=24.09 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 011656 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
..|.++++..|+|+..|+.+|+.-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888877776665554
No 51
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.95 E-value=66 Score=25.12 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHhhhhHHHHHHHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVND 164 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se-----~Rv~~aLd~~~~~e~~~r~ 164 (480)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...--.++.+..+.+.
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~e 60 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE 60 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888777664 3444444444444444443
No 52
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=38.05 E-value=14 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhh
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHIS 144 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s 144 (480)
++..||+.+..||.|+-+|..++-..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887777665443
No 53
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.88 E-value=39 Score=21.06 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 011656 121 GTMKKELAELQEDLAQAHRQV 141 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~ 141 (480)
..|-|||..|||.|.+-..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999888776654
No 54
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=37.29 E-value=7.5 Score=36.36 Aligned_cols=64 Identities=27% Similarity=0.442 Sum_probs=40.4
Q ss_pred cceeeeeecCCCCCCCccCCceeehhhHHH--HhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHH
Q 011656 50 AWSTLFDVEDPRSKVPQCKGKFLDVNQALE--VARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKEL 127 (480)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 127 (480)
.-..+|.-||||- .|-||=. .--||+.|+|-. .--+.+...|..+-.-+.-|+|||+||
T Consensus 61 dlnqifnkedpry----------evvqagasaahdfdvryldih---------khgreiarllekiqkyfQ~IEtlK~ql 121 (294)
T 3caz_A 61 DLNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDIH---------KHGREIARLLEKIQKYRQEIEEIKKEY 121 (294)
T ss_dssp HHTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcch----------HHHHcccccccccchhhhhHH---------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999985 3445433 335788888732 222334444444455566689999999
Q ss_pred HHHHH
Q 011656 128 AELQE 132 (480)
Q Consensus 128 ~~l~~ 132 (480)
++.|+
T Consensus 122 ~nf~e 126 (294)
T 3caz_A 122 KETDK 126 (294)
T ss_dssp HHHHH
T ss_pred hhhHH
Confidence 88775
No 55
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.14 E-value=1.4e+02 Score=24.48 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=37.6
Q ss_pred HHHHhhChhhhhccchhhHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHh
Q 011656 105 KVVEVLNPLARDYKSIGTMKKE-------LAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDR 165 (480)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~-------~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~ 165 (480)
|..-.=|.|-.|..|...|-|| |+.|..|-+.-..++.-.|+|+.++|..+-. |++.+..
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~-EklAkld 71 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL-EKLARME 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-HHHHHHH
Confidence 3333445555666666655544 5555556666667777888999988877653 5555543
No 56
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.76 E-value=68 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011656 121 GTMKKELAELQEDLAQAHRQVHISEARV 148 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~se~Rv 148 (480)
..|.+++-.||.-+++-+.++-..|.-|
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776666555544
No 57
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.47 E-value=84 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhhhhHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVA---TALDKLAY 157 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~---~aLd~~~~ 157 (480)
-.+++..|+.||+||-.-.++++..++++. .+..+|.+
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLND 53 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLND 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhH
Confidence 456777888888888877778888777775 44444444
No 58
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.20 E-value=93 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhhhhHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHI--SEARVATALDKLAYMEAL 161 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~--se~Rv~~aLd~~~~~e~~ 161 (480)
|..|+.|++.|+.+++++..++.. .++=|....++|-.|.++
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNei 53 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEI 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 445555555555555555544443 245577888888888543
No 59
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=34.05 E-value=48 Score=29.18 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=35.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
++.-.....||+|++.|++++.+.-.|+- +++.+..-|+.+..
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 33445678999999999999999998886 77788888877766
No 60
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.82 E-value=23 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=17.9
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 011656 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (480)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 140 (480)
.|-+-|..++.++ .+|.+|..+|++++.+...+
T Consensus 24 EVD~FLd~v~~~~---~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY---EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 3555555555554 35677777777777665544
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.78 E-value=1.3e+02 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
|..|++.+..|++++-++..++..+...+..+
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444444333
No 62
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=32.76 E-value=1.1e+02 Score=24.52 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 011656 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (480)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~ 155 (480)
+..|...++.+|..+.+... ...++++|..|++.+..-..++.-=..++..||..+
T Consensus 52 i~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 52 LSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777766532 224777777777777777777666667777776543
No 63
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.33 E-value=65 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~ 150 (480)
|..|++.+..|+++|-++..++..+...+..
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655555555544444443
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.24 E-value=66 Score=28.20 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
+-+-.||.+|..+|.++..+..++--...++..-..++..+|
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666666555555555555555554
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.11 E-value=1.4e+02 Score=25.97 Aligned_cols=26 Identities=0% Similarity=0.201 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISE 145 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se 145 (480)
+..|+++|+.+.+|++.-..++...+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333333333
No 66
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=28.06 E-value=1.6e+02 Score=23.26 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 011656 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (480)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~ 155 (480)
+..|...++.++..+.+..+ ...++++|..|++.+.+-...+.-=..++..||..+
T Consensus 52 i~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 52 LTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777666532 235777777787777777777666666777776543
No 67
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.05 E-value=1.7e+02 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
+..|..+|..+++.|..|..++-.++.+.+.|
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555533
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.70 E-value=76 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011656 124 KKELAELQEDLAQAHRQVHISEARVATAL 152 (480)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~se~Rv~~aL 152 (480)
..+|.+||+|+..-..|+.++..+|.+|-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877777777777777776554
No 69
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=27.32 E-value=11 Score=23.75 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.5
Q ss_pred cchhHHHH
Q 011656 92 ARQDVLTI 99 (480)
Q Consensus 92 ~~~~~~~~ 99 (480)
+||||||+
T Consensus 16 t~QDLL~l 23 (26)
T 2h8b_A 16 TQQDLLTL 23 (26)
T ss_dssp CHHHHHTT
T ss_pred cHHHHHhh
Confidence 79999874
No 70
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.16 E-value=1.7e+02 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
|+..|.+||+..++++.+-..++......|...-....+|
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777666666665544444433
No 71
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.15 E-value=2.2e+02 Score=22.22 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
..+..++..||.-+..-..++-.++.|+.++..+|..
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666665554
No 72
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.26 E-value=1.1e+02 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
.+|++||.+|+|+..+-..+....++.+...-+++.. +++.|+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~rr~l 50 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-SNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4677777777777777777777777777766666666 44555554
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.09 E-value=92 Score=26.72 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
-|+-|+.---+-||.+ .+++.+||+|+..-.++++..++-|+
T Consensus 54 TV~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 54 TVMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333445566 67799999999988888887766554
No 74
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.79 E-value=70 Score=21.56 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 132 (480)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 4567888887653 355556555554
No 75
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=24.63 E-value=30 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 011656 120 IGTMKKELAELQEDLAQA 137 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a 137 (480)
+.+||+|+++|=|.+..|
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999998887765
No 76
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.55 E-value=1.2e+02 Score=31.07 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHhh
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r~~~ 166 (480)
+..|+.+|+.|+++..+-..+++.+++++...-.++...| ..|+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~rr~l 50 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-TVRRTL 50 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567777777777777777777777777777666666533 334444
No 77
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.37 E-value=99 Score=26.18 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~ 154 (480)
+..|++++..|++++.+-+.+....+..+.+.+..
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666777777777777777777777666665544
No 78
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=23.93 E-value=1.4e+02 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 011656 125 KELAELQEDLAQAHRQ 140 (480)
Q Consensus 125 ~~~~~l~~~~~~a~~~ 140 (480)
.++..++.++.....+
T Consensus 223 ~~l~~l~~~~~~~~~~ 238 (284)
T 1c1g_A 223 EEIKVLSDKLKEAETR 238 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 79
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.73 E-value=1.7e+02 Score=27.47 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~ 158 (480)
+..|++++++|+++|.+++...-+...|...-......+
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888889999999999999999988777777665
No 80
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.44 E-value=1.1e+02 Score=32.62 Aligned_cols=42 Identities=10% Similarity=0.288 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHH
Q 011656 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (480)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~r 163 (480)
.|+++++.|++++..-=+++..+|..|..-+.++-.||.-+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999887778889999999988888888774433
No 81
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.06 E-value=1.4e+02 Score=25.71 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHhhhhHHHHHHHHHh
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 165 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~se-----~Rv~~aLd~~~~~e~~~r~~ 165 (480)
+|...|.++|.+|.+||..-.-|-.+.+ +|+.+.--.++.+..+.+.+
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er 64 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQT 64 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998877766552 45555555555554444433
No 82
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.60 E-value=2.4e+02 Score=21.98 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 011656 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (480)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e~~~ 162 (480)
+...+||.+..|+.|...|-.++...|.==.==-+||++.|.+.
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~ 46 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELIC 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677888888888888888888877752222233555544333
No 83
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.45 E-value=50 Score=23.95 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCcEEEeecCCCCCCCCCCCCcccCCeEeccccceEE
Q 011656 248 KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (480)
Q Consensus 248 ~dG~v~A~~n~CpHRGapLs~G~v~~~~l~CPYHGW~F 285 (480)
.+|+|......||.-|+.+.... ..+.+.|+=-|++|
T Consensus 11 ~~~kv~~~~k~CP~CG~~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 11 KDGKVIRKNKFCPRCGPGVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp CSSCEECSSEECSSSCSSCEEEE-CSSEEECSSSCCEE
T ss_pred ECCEEEEecccCCCCCCceEEec-CCCeEECCCCCCEE
Confidence 36888888999999888665443 34789999777764
No 84
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=22.06 E-value=2.1e+02 Score=21.28 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
..++|++++|. .+..+.-+++.+..+....+..++..|.+|.+-
T Consensus 16 ~~e~iv~~l~~------~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l 59 (66)
T 3m0a_A 16 TFENIVCVLNR------EVERVAMTAEACSRQHRLDQDKIEALSSKVQQL 59 (66)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHH
Confidence 34667776554 466777788888788888888888888887643
No 85
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.00 E-value=2.8e+02 Score=23.81 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=43.1
Q ss_pred ccccchhHH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 89 DWRARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
.|.+.++-+ .|+..-+.+....+.|=..-.|-..=-+.|+.|++|+.+|..+..-.-.+-..-|.++..
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 344444455555555555566677777788888888888877766555554444544444
No 86
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.98 E-value=2.2e+02 Score=20.19 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 123 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 123 ~~~~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
|||.++.|..+-.+-....++.|.=+..--|.++.+|
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 5555655555544444444445444444444444444
No 87
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=21.91 E-value=2.2e+02 Score=24.59 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh---H--HHHHHHhhhhHHHH
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHIS---E--ARVATALDKLAYME 159 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s---e--~Rv~~aLd~~~~~e 159 (480)
+|...|.++|.+|.+||..-.-|-.+. | +|+.+.--.++.+.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~ 59 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYL 59 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHH
Confidence 568899999999999998877766554 1 34444444444443
No 88
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.34 E-value=1e+02 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHH
Q 011656 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQ 136 (480)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (480)
.|-+||+|.|+. ..+|..|.+.|++.+..
T Consensus 5 QLE~kVEeLl~~-------~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESE-------VWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------hHHHHHHHHHHHHHhcc
Confidence 366788888764 45666666666666543
No 89
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=21.23 E-value=63 Score=27.23 Aligned_cols=37 Identities=35% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHH
Q 011656 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLA 135 (480)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (480)
++++.|.|.-++||-=.|-+- +.=||+-|--||.|+.
T Consensus 44 ~~EeFt~~Lq~~lns~pqP~l-vPFLK~sLp~Lr~~l~ 80 (105)
T 2h7b_A 44 TIEEFHSKLQEATNFPLRPFV-IPFLKANLPLLQRELL 80 (105)
T ss_dssp CHHHHHHHHHHHSSSSCCSSS-HHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-hHHHHHhHHHHHHHHH
Confidence 889999999999998888887 8999999999998886
No 90
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=21.21 E-value=1.7e+02 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 011656 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (480)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (480)
|..+-.+|+++.+.+. +. =..++|+|..+++=|+++|+.+-
T Consensus 37 l~qv~q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~ 77 (97)
T 3g80_A 37 LEQLAQETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAY 77 (97)
T ss_dssp HHHHHHHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888888877 22 27899999999999999998664
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.09 E-value=1.2e+02 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011656 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~se~Rv~ 149 (480)
|..|+++...|++|+.+-..+....++++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777666666664
No 92
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.79 E-value=54 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011656 126 ELAELQEDLAQAHRQVHISEARVATA 151 (480)
Q Consensus 126 ~~~~l~~~~~~a~~~~~~se~Rv~~a 151 (480)
+|.+||+|+..-..|+.++..+|.+|
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA 31 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDA 31 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555555555533
No 93
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.61 E-value=91 Score=26.19 Aligned_cols=16 Identities=50% Similarity=0.692 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 011656 120 IGTMKKELAELQEDLA 135 (480)
Q Consensus 120 ~~~~~~~~~~l~~~~~ 135 (480)
|.+||..|.+++|.++
T Consensus 32 VdlLKD~LEe~eE~~a 47 (103)
T 4h22_A 32 VDTLKDMLLELEEQLA 47 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 94
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=20.56 E-value=2.9e+02 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHI 143 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (480)
+|...|.++|.+|.+||..-+-|-.+
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999887766554
No 95
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.40 E-value=2e+02 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=20.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh
Q 011656 118 KSIGTMKKELAELQEDLAQAHRQVHI 143 (480)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (480)
+|...|.++|.+|.+||..-.-|-.+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~at 34 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLAM 34 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56889999999999998877666543
No 96
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=20.23 E-value=1.2e+02 Score=29.60 Aligned_cols=32 Identities=6% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 011656 126 ELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (480)
Q Consensus 126 ~~~~l~~~~~~a~~~~~~se~Rv~~aLd~~~~ 157 (480)
++...+-+++++..++...+..+..+...|..
T Consensus 153 d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L~~ 184 (428)
T 1ek9_A 153 DVQNARAQYDTVLANELTARNNLDNAVEQLRQ 184 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 97
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.05 E-value=2.2e+02 Score=22.33 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 011656 129 ELQEDLAQAHRQVHISEARVATALDKLAYME 159 (480)
Q Consensus 129 ~l~~~~~~a~~~~~~se~Rv~~aLd~~~~~e 159 (480)
.||+.|.+.-.++..-++|+..--.++.+.|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd 53 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKD 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555545445555544444444443
Done!