BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011658
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 93/254 (36%), Gaps = 50/254 (19%)
Query: 235 DVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
++ G G+ ++L HGFG WR + L +Q TV FD G G S L +
Sbjct: 22 NITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQF--TVIVFDYVGSG-QSDLESFSTKRY 78
Query: 295 GSINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKK---------------- 338
S+ Y + + + + L+N S V + T +G +
Sbjct: 79 SSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCFXNF 138
Query: 339 --HLVRPLLRTEITQVVNRR-----AWYDATKLTTEVLSLYKAPLCVEGWDEALHEIGRL 391
V R ++ +++N W + Y APL V G + IG L
Sbjct: 139 PPDYVGGFERDDLEELINLXDKNYIGWAN-----------YLAPL-VXGASHSSELIGEL 186
Query: 392 SHE-TILPPQCEAALLKA---------VEDL--PVLVIAGAEDALVSLKSSQVMASKLVN 439
S P KA +ED+ P L+ A+D+L S + Q A + N
Sbjct: 187 SGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENIPN 246
Query: 440 SRLVAISGCGHLPH 453
S+L I GH H
Sbjct: 247 SQLELIQAEGHCLH 260
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 413 PVLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFI 468
P LVIAGA D + + +++A+ + +RLV + HL + E P+A A+ F+
Sbjct: 210 PTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAV-HLSNVEFPQAFEGAVLSFL 264
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 411 DLPVLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFIS 469
D P L I G VS + + ++ +R I+G GH H E P A+L AI +++
Sbjct: 195 DHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLN 253
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 411 DLPVLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFIS 469
D P L I G VS + + ++ +R I+G GH H E P A+L AI +++
Sbjct: 195 DHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLN 253
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
++L+HGF +SWRH + LA G V A D+ G+G +S+ R
Sbjct: 36 VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 78
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
++L+HGF +SWRH + LA G V A D+ G+G +S+ R
Sbjct: 30 VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 72
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 94/266 (35%), Gaps = 43/266 (16%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHVMGVLARQI------GCTVAAFDRPGWGLTSRLRQKDW 291
G G ++L+HG G G W + +R I G V D PGWG + +
Sbjct: 33 GQGDETVVLLHGSGPGATGWAN----FSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSG- 87
Query: 292 EEKGSINPYKLET---QVAIRGVVLLNASFSREVVPGFA---------RILMRTALGKKH 339
+ +N L++ Q+ I + LL S F +LM G
Sbjct: 88 -SRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMS 146
Query: 340 LVRPLLRTEITQV--VNRRAWYDATKLTTEVLSLYKAPLCVEGWDEALHE-IGRLSHETI 396
L P+ I ++ + R+ + KL ++ + L ++ L+ + R H
Sbjct: 147 LFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLEN 206
Query: 397 LPPQCEA------------ALLKAVEDLPVLVIAGAEDALVSLKSSQVMASKLVNSRLVA 444
EA A +KA L++ G D V + + + S + S L
Sbjct: 207 FVKSLEANPKQFPDFGPRLAEIKA----QTLIVWGRNDRFVPMDAGLRLLSGIAGSELHI 262
Query: 445 ISGCGHLPHEECPKALLAAITPFISR 470
CGH E A + F++R
Sbjct: 263 FRDCGHWAQWEHADAFNQLVLNFLAR 288
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 413 PVLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFISRL 471
PVLVI A+D + + +A L N R + I GHL E P+A+ A+ F + +
Sbjct: 233 PVLVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGHLGFFERPEAVNTAMLKFFASV 291
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 412 LPVLVIAGAEDALVSLKSSQVMASKLV-NSRLVAISGCGH 450
+PVLVI G +D +V S V+++KLV N +L+ G H
Sbjct: 221 IPVLVIHGDDDQVVPYADSGVLSAKLVKNGKLITYKGAPH 260
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF FSWR+ + LA Q G V A D G+G +S
Sbjct: 258 ALCLCHGFPESWFSWRYQIPALA-QAGFRVLAIDMKGYGDSS 298
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 260 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 300
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 41 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 81
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 56 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 96
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 397 LPPQCEAALLKAVEDLPVLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGH 450
LPP AA L+ V +P LVI D + + +A + +RL I G GH
Sbjct: 224 LPPPSRAAELREVT-VPTLVIQAEHDPIAPAPHGKHLAGLIPTARLAEIPGMGH 276
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 415 LVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFISRL 471
L++ G++D +V + S+ AS + SRL + G GH + E P+ + F+ L
Sbjct: 151 LLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL 207
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
GN Q ++L+HG G G SW + + VLAR V A D+PG+G + + E
Sbjct: 34 GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 85
Query: 295 GSINPYKLETQVAIRGV 311
G N Y +A++G+
Sbjct: 86 GQFNRY---AAMALKGL 99
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 341 VRPLLRTEITQVVNRRAWYDATKLTTEVLSLYK-----APLCVEGWDEALHEIGRLSHET 395
+ ++R EI + V R + L L+ APL ++ + L T
Sbjct: 432 IHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCSKVTETFDYL---T 488
Query: 396 ILPPQCEAALLKAVEDLPVLVIA-GAEDALVSLKSSQVMASKLVNSRLVAISG------- 447
LP Q LLKAV+ P+L I+ D+L+ + + AS+L ++R A++G
Sbjct: 489 FLPLQTVQGLLKAVQ--PLLKISMSMRDSLILVLRKAMFASQL-DARKSAVAGFLLLLKN 545
Query: 448 ---CGHLPHEECPKAL 460
G LP +C +++
Sbjct: 546 FKVLGSLPSSQCTQSI 561
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 412 LPVLVIAGAEDALVSLK-SSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFI 468
LP+ V+ G ++ V L S+V L + I GH P E P A + FI
Sbjct: 209 LPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 412 LPVLVIAGAEDALVSLK-SSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFI 468
LP+ V+ G ++ V L S+V L + I GH P E P A + FI
Sbjct: 209 LPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
GN Q ++L+HG G G SW + + VLAR V A D+PG+G + + E
Sbjct: 54 GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 105
Query: 295 GSINPYKLETQVAIRGV 311
G N Y +A++G+
Sbjct: 106 GQFNRY---AAMALKGL 119
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 44/261 (16%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
V G+G+ I+L HGFG W+H++ L V +D G G T+ D++
Sbjct: 14 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 70
Query: 296 SINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKKHLVRPLLRTEITQV--- 352
++ Y + + + + + F V +L L RP L ++I +
Sbjct: 71 NLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLAS-------LNRPDLFSKIVMISAS 123
Query: 353 ------VNRRAWY---DATKLTTEVLSLYK------APLCVEGWDE--ALHEIGR----- 390
V+ + + D +L + S YK APL V G + A+ E R
Sbjct: 124 PRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNM 183
Query: 391 -----LS-HETILPPQCEAALLKAVEDLPVLVIAGAEDALVSLKSSQVMASKL-VNSRLV 443
LS +TI Q + + +P ++ +D V + S+ + + L S +
Sbjct: 184 RPDIALSVGQTIF--QSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVE 241
Query: 444 AISGCGHLPHEECPKALLAAI 464
I GHLP P +++ I
Sbjct: 242 VIPSDGHLPQLSSPDSVIPVI 262
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 371 LYKAPLCVEGWDEALHEIGRLSHETILPPQCE 402
++ P C E W++AL E G ++ TI P C+
Sbjct: 228 MHPTPECTEVWNKALAEQGNINPYTIYTPTCD 259
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 44/261 (16%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
V G+G+ I+L HGFG W+H++ L V +D G G T+ D++
Sbjct: 12 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 68
Query: 296 SINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKKHLVRPLLRTEITQV--- 352
++ Y + + + + + F V +L L RP L ++I +
Sbjct: 69 NLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLAS-------LNRPDLFSKIVMISAS 121
Query: 353 ------VNRRAWY---DATKLTTEVLSLYK------APLCVEGWDE--ALHEIGR----- 390
V+ + + D +L + S YK APL V G + A+ E R
Sbjct: 122 PRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNM 181
Query: 391 -----LS-HETILPPQCEAALLKAVEDLPVLVIAGAEDALVSLKSSQVMASKL-VNSRLV 443
LS +TI Q + + +P ++ +D V + S+ + + L S +
Sbjct: 182 RPDIALSVGQTIF--QSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVE 239
Query: 444 AISGCGHLPHEECPKALLAAI 464
I GHLP P +++ I
Sbjct: 240 VIPSDGHLPQLSSPDSVIPVI 260
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 44/261 (16%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
V G+G+ I+L HGFG W+H++ L V +D G G T+ D++
Sbjct: 30 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 86
Query: 296 SINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKKHLVRPLLRTEITQV--- 352
++ Y + + + + + F V +L L RP L ++I +
Sbjct: 87 NLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLAS-------LNRPDLFSKIVMISAS 139
Query: 353 ------VNRRAWY---DATKLTTEVLSLYK------APLCVEGWDE--ALHEIGR----- 390
V+ + + D +L + S YK APL V G + A+ E R
Sbjct: 140 PRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNM 199
Query: 391 -----LS-HETILPPQCEAALLKAVEDLPVLVIAGAEDALVSLKSSQVMASKL-VNSRLV 443
LS +TI Q + + +P ++ +D V + S+ + + L S +
Sbjct: 200 RPDIALSVGQTIF--QSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVE 257
Query: 444 AISGCGHLPHEECPKALLAAI 464
I GHLP P +++ I
Sbjct: 258 VIPSDGHLPQLSSPDSVIPVI 278
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
I+ +HGF +SWRH M LA + G A D G+G T+
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
I+ +HGF +SWRH M LA + G A D G+G T+
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 414 VLVIAGAEDALVSLKSSQVMASKLVNSRLVAISGCGH 450
VLV G +D +V L +S + L ++ LV + CGH
Sbjct: 228 VLVFHGRQDRIVPLDTSLYLTKHLKHAELVVLDRCGH 264
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 412 LPVLVIAGAEDALVSLK-SSQVMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFI 468
LP+ V+ G + V L S+V L + I GH P E P A + FI
Sbjct: 209 LPIAVVNGRDGPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWG 281
++LVHG G W+ V+ LAR C D PG G
Sbjct: 19 VVLVHGLLGSGADWQPVLSHLAR-TQCAALTLDLPGHG 55
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
+H +PGSP R T + C TP+ A G +++R+AF ++S
Sbjct: 14 LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
+H +PGSP R T + C TP+ A G +++R+AF ++S
Sbjct: 14 LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,371,539
Number of Sequences: 62578
Number of extensions: 530404
Number of successful extensions: 1180
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 53
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)