BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011661
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 36/236 (15%)
Query: 223 QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR-SDALVTITSGSNIKMGDLVYEPP 281
Q+WT G F+ ++ G Y + + G+Y + + VT+++GS +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTMVY----YQGEYAVATSSVTVSAGSTTTKN--ISGSV 336
Query: 282 RDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVY 341
+ G T+++IG D F N ++ R + SR + P L Y
Sbjct: 337 KTGTTIFKIGEWDGQPTGFR--------------NAANQLRMHPSDSRMSSWGP---LTY 379
Query: 342 TIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIA-SATLAEL 400
T+G S + F V + ++N IKF ++ LR+ S
Sbjct: 380 TVGSSALTD--FPMAVFKSVNNPV------TIKFTATSAQTGAA-TLRIGTTLSFAGGRP 430
Query: 401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLK 456
Q +N + P T L R + R GL +Y V+IP + G NTI +
Sbjct: 431 QATINSYTGSAPAAPTNLDSR--GVTRGAYRGLGEVYDVSIPSGTIVAGTNTITIN 484
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 36/236 (15%)
Query: 223 QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR-SDALVTITSGSNIKMGDLVYEPP 281
Q+WT G F+ ++ G Y + + G+Y + + VT+++GS +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTMVY----YQGEYAVATSSVTVSAGSTTTKN--ISGSV 336
Query: 282 RDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVY 341
+ G T+++IG D F N ++ R + SR + P L Y
Sbjct: 337 KTGTTIFKIGEWDGQPTGFR--------------NAANQLRMHPSDSRMSSWGP---LTY 379
Query: 342 TIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIA-SATLAEL 400
T+G S + F V + ++N IKF ++ LR+ S
Sbjct: 380 TVGSSALTD--FPMAVFKSVNNPV------TIKFTATSAQTGAA-TLRIGTTLSFAGGRP 430
Query: 401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLK 456
Q +N + P T L R + R GL +Y V+IP + G NTI +
Sbjct: 431 QATINSYTGSAPAAPTNLDSR--GVTRGAYRGLGEVYDVSIPSGTIVAGTNTITIN 484
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 36/236 (15%)
Query: 223 QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR-SDALVTITSGSNIKMGDLVYEPP 281
Q+WT G F+ ++ G Y + + G+Y + + VT+++GS +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTMVY----YQGEYAVATSSVTVSAGSTTTKN--ISGSV 336
Query: 282 RDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVY 341
+ G T+++IG D F N ++ R + SR + P L Y
Sbjct: 337 KTGTTIFKIGEWDGQPTGFR--------------NAANQLRMHPSDSRMSSWGP---LTY 379
Query: 342 TIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIA-SATLAEL 400
T+G S + F V + ++N IKF ++ LR+ S
Sbjct: 380 TVGSSALTD--FPMAVFKSVNNPV------TIKFTATSAQTGAA-TLRIGTTLSFAGGRP 430
Query: 401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLK 456
Q +N + P T L R + R GL +Y V+IP + G NTI +
Sbjct: 431 QATINSYTGSAPAAPTNLDSR--GVTRGAYRGLGEVYDVSIPSGTIVAGTNTITIN 484
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENT 452
Q R N NR T G A+A +G+ G+ + Y+ I G R ++GE T
Sbjct: 76 QPRYTQMNDNR--HGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVT 125
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 231 DGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVT------ITSGSNIKMGDLVYEP 280
D F RT Y++ A +P GDY SDA I GSNI G V+EP
Sbjct: 277 DNMFQQILTRTDEYDVIA-LPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEP 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,009,825
Number of Sequences: 62578
Number of extensions: 801046
Number of successful extensions: 1437
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 7
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)