Query 011661
Match_columns 480
No_of_seqs 184 out of 301
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkg_A Rhamnogalacturonase B; 100.0 2E-105 8E-110 853.3 34.0 379 9-476 118-508 (508)
2 2nsm_A Carboxypeptidase N cata 98.1 6.9E-06 2.4E-10 86.3 9.0 96 181-300 320-416 (439)
3 1h8l_A Carboxypeptidase GP180 98.0 1.9E-05 6.6E-10 81.3 10.2 78 181-279 300-378 (380)
4 3mn8_A LP15968P; catalytic dom 97.9 1.5E-05 5.2E-10 83.8 8.0 90 182-292 337-428 (435)
5 1uwy_A Carboxypeptidase M; met 97.9 1.4E-05 4.7E-10 83.8 6.9 92 181-293 295-390 (426)
6 1xpn_A Hypothetical protein PA 97.1 0.0025 8.4E-08 59.0 10.6 105 168-273 28-166 (170)
7 3qec_A Putative carbohydrate b 97.0 0.005 1.7E-07 55.9 10.7 95 178-273 20-146 (150)
8 4aw7_A GH86A beta-porphyranase 96.6 0.0033 1.1E-07 68.1 7.4 72 383-461 502-575 (591)
9 2wz8_A Cellulosome protein doc 96.4 0.012 4.2E-07 53.2 9.4 87 373-476 49-148 (156)
10 2w87_A Esterase D, XYL-CBM35; 96.3 0.023 7.8E-07 50.3 10.0 90 373-478 41-132 (139)
11 2w3j_A Carbohydrate binding mo 96.0 0.021 7.2E-07 50.9 8.4 88 373-478 41-130 (145)
12 2w47_A Lipolytic enzyme, G-D-S 95.8 0.028 9.7E-07 49.7 8.2 89 373-478 42-132 (144)
13 2bgo_A Endo-B1,4-mannanase 5C; 94.9 0.11 3.7E-06 46.5 8.9 89 369-478 34-123 (140)
14 2vzp_A Aocbm35, EXO-beta-D-glu 94.5 0.11 3.6E-06 44.7 7.8 85 373-474 41-127 (127)
15 3kcp_A Cellulosomal-scaffoldin 94.1 0.089 3E-06 53.0 7.3 62 180-254 156-223 (321)
16 2xsu_A Catechol 1,2 dioxygenas 92.4 0.28 9.6E-06 49.3 7.8 63 180-245 135-202 (312)
17 2azq_A Catechol 1,2-dioxygenas 91.4 0.38 1.3E-05 48.4 7.4 65 179-246 130-199 (311)
18 1uxz_A Cellulase B; carbohydra 90.9 1.1 3.7E-05 38.8 9.1 77 383-476 52-129 (131)
19 2boy_A 3-chlorocatechol 1,2-di 90.7 0.26 9E-06 48.2 5.4 65 179-246 100-169 (254)
20 3th1_A Chlorocatechol 1,2-diox 89.7 0.34 1.2E-05 47.5 5.2 64 180-246 98-166 (260)
21 2bum_B Protocatechuate 3,4-dio 89.6 0.78 2.7E-05 44.5 7.6 65 179-246 76-150 (241)
22 3t63_M 3,4-PCD, protocatechuat 89.4 0.55 1.9E-05 45.5 6.4 67 177-246 73-149 (238)
23 2y8k_A Arabinoxylanase, carboh 88.6 2 6.7E-05 45.2 10.5 87 373-478 398-484 (491)
24 1tmx_A Hydroxyquinol 1,2-dioxy 88.4 0.55 1.9E-05 46.8 5.8 65 179-246 131-199 (293)
25 2bum_A Protocatechuate 3,4-dio 87.7 0.7 2.4E-05 43.8 5.8 64 179-245 50-124 (209)
26 1dmh_A 1,2-CTD, catechol 1,2-d 87.1 0.53 1.8E-05 47.3 4.8 63 181-246 133-202 (311)
27 3n9t_A PNPC; phospholipid bind 87.1 0.67 2.3E-05 46.2 5.4 65 179-246 127-196 (290)
28 2cdp_A Beta-agarase 1; carbohy 86.4 1.7 5.8E-05 39.1 7.3 82 382-475 77-159 (160)
29 3hhy_A 1,2-CTD, catechol 1,2-d 85.9 0.73 2.5E-05 45.7 4.9 63 181-246 131-198 (280)
30 3t63_A 3,4-PCD, protocatechuat 85.8 0.73 2.5E-05 43.5 4.7 64 180-246 47-116 (200)
31 1ti6_B Pyrogallol hydroxytrans 84.6 1.2 4.1E-05 43.7 5.8 48 226-278 227-274 (274)
32 3o5u_A Chlorocatechol 1,2-diox 84.0 1.3 4.4E-05 43.4 5.6 64 180-246 102-171 (257)
33 1w9s_A BH0236 protein, BHCBM6; 83.8 10 0.00036 32.9 11.1 82 383-476 58-140 (142)
34 2h4e_A Transthyretin; amyloid, 81.3 1.6 5.5E-05 38.3 4.7 63 180-250 8-75 (127)
35 3irp_X URO-adherence factor A; 79.6 3.4 0.00012 43.2 7.3 63 180-251 304-372 (429)
36 1uxx_X Xylanase U; carbohydrat 79.2 17 0.00058 31.2 10.7 78 384-478 51-130 (133)
37 2v4v_A GH59 galactosidase; hyd 79.2 14 0.00046 31.5 9.9 79 384-475 49-128 (129)
38 2g2n_A Transthyretin-like prot 78.7 2.3 7.8E-05 36.7 4.7 62 180-250 2-68 (114)
39 3e8v_A Possible transglutamina 76.9 15 0.0005 29.9 8.7 57 186-256 5-65 (82)
40 1oo2_A Transthyretin; retinol- 73.7 3.1 0.00011 36.1 4.2 60 183-250 3-67 (119)
41 1tg7_A Beta-galactosidase; TIM 73.2 1.8 6.1E-05 49.8 3.3 70 371-459 855-930 (971)
42 4hg6_B Cellulose synthase subu 71.8 1.7 5.9E-05 48.0 2.7 74 369-459 61-139 (707)
43 3qva_A Transthyretin-like prot 71.6 6.6 0.00022 33.9 5.7 58 180-250 8-69 (116)
44 1f86_A Transthyretin Thr119Met 71.4 4.9 0.00017 34.6 4.9 49 197-250 14-66 (115)
45 1od3_A Putative xylanase; hydr 70.7 33 0.0011 30.9 10.6 76 384-476 90-165 (168)
46 4ank_A Transthyretin; hormone 70.4 5 0.00017 36.0 4.9 62 181-250 29-95 (147)
47 4hg6_B Cellulose synthase subu 69.2 5.8 0.0002 43.9 6.0 77 370-458 319-402 (707)
48 1uy4_A Endo-1,4-beta-xylanase 68.7 38 0.0013 29.6 10.3 76 384-476 68-143 (145)
49 2vzs_A CSXA, EXO-beta-D-glucos 67.3 1.1 3.9E-05 51.6 0.0 86 372-474 945-1032(1032)
50 3fn9_A Putative beta-galactosi 66.7 4.1 0.00014 44.9 4.4 69 370-460 63-132 (692)
51 2ww8_A RRGA, cell WALL surface 66.7 12 0.00042 42.5 8.3 80 181-272 47-128 (893)
52 2pz4_A Protein GBS052; SPAB, G 63.4 7.6 0.00026 36.9 5.0 75 196-273 140-224 (239)
53 3lpf_A Beta-glucuronidase; alp 61.6 6.9 0.00024 42.3 4.9 67 371-459 71-138 (605)
54 3kpt_A Collagen adhesion prote 61.1 9 0.00031 38.7 5.3 47 196-250 19-65 (355)
55 1r6v_A Subtilisin-like serine 60.5 16 0.00056 40.1 7.6 59 181-249 445-503 (671)
56 3cmg_A Putative beta-galactosi 60.5 6 0.0002 43.2 4.1 69 369-459 51-120 (667)
57 1yq2_A Beta-galactosidase; gly 58.2 6.4 0.00022 45.5 4.0 68 370-459 121-191 (1024)
58 3bga_A Beta-galactosidase; NYS 56.4 6.7 0.00023 45.3 3.8 68 370-459 129-196 (1010)
59 3iwv_A 5-hydroxyisourate hydro 55.8 6.9 0.00024 34.8 2.9 62 181-250 25-92 (138)
60 2h0e_A Transthyretin-like prot 55.1 14 0.00047 32.1 4.7 57 182-250 9-71 (121)
61 2x5p_A FBA2, fibronectin bindi 54.9 23 0.00079 30.4 6.1 43 197-250 40-82 (121)
62 3c7f_A Xylanase D, endo-1,4-be 54.9 66 0.0023 33.3 10.9 80 384-475 406-485 (487)
63 3gm8_A Glycoside hydrolase fam 54.3 8.9 0.0003 43.1 4.3 68 371-460 70-137 (801)
64 3phz_A Ricin B-related lectin; 52.2 24 0.00081 34.9 6.4 97 185-309 67-170 (286)
65 3og2_A Beta-galactosidase; TIM 50.6 15 0.0005 42.3 5.3 69 372-457 888-960 (1003)
66 2je8_A Beta-mannosidase; glyco 50.3 9.5 0.00032 43.0 3.7 65 372-458 69-134 (848)
67 1cwv_A Invasin; integrin-bindi 49.0 81 0.0028 33.2 10.4 74 182-269 28-103 (492)
68 2pz4_A Protein GBS052; SPAB, G 48.3 6.9 0.00024 37.1 1.9 26 225-250 71-96 (239)
69 1jz7_A Lactase, beta-galactosi 46.3 8.5 0.00029 44.5 2.5 68 370-459 122-190 (1023)
70 4fxt_A Uncharacterized protein 45.6 71 0.0024 29.9 8.3 63 181-252 7-70 (202)
71 3kpt_A Collagen adhesion prote 44.3 20 0.00069 36.0 4.7 63 184-249 249-313 (355)
72 3oba_A Beta-galactosidase; TIM 43.3 8.7 0.0003 44.4 2.0 68 370-459 115-183 (1032)
73 3uaf_A TTR-52; beta barrel/san 41.7 30 0.001 29.7 4.6 51 180-237 3-55 (117)
74 3d3a_A Beta-galactosidase; pro 41.5 15 0.0005 40.1 3.3 67 369-460 509-575 (612)
75 3pe9_A Fibronectin(III)-like m 39.5 58 0.002 26.8 6.0 43 223-266 43-85 (98)
76 3v9f_A Two-component system se 39.0 31 0.0011 37.4 5.5 26 225-250 731-756 (781)
77 4e8d_A Glycosyl hydrolase, fam 38.8 10 0.00035 41.2 1.6 42 396-455 527-568 (595)
78 3hn5_A Putative exported prote 38.0 84 0.0029 29.8 7.5 60 181-249 10-71 (215)
79 4a2l_A BT_4663, two-component 34.9 28 0.00096 37.8 4.3 26 225-250 737-762 (795)
80 3hn3_A Beta-G1, beta-glucuroni 33.5 18 0.00062 38.9 2.4 66 371-458 81-153 (613)
81 3ott_A Two-component system se 33.1 34 0.0012 36.9 4.6 26 225-250 702-728 (758)
82 4eiu_A Uncharacterized hypothe 31.7 2.5E+02 0.0086 27.1 9.8 63 181-249 9-76 (249)
83 2x9z_A RRGB, cell WALL surface 31.4 76 0.0026 30.4 6.3 67 181-254 156-226 (262)
84 1b4r_A Protein (PKD1_human); P 29.3 50 0.0017 26.3 3.8 28 239-266 52-79 (80)
85 2x9x_A RRGB, cell WALL surface 28.5 20 0.0007 37.3 1.7 44 226-270 372-417 (444)
86 2xtl_A Cell WALL surface ancho 28.1 21 0.00072 37.4 1.7 44 226-270 378-423 (452)
87 3cih_A Putative alpha-rhamnosi 27.9 70 0.0024 35.1 6.0 54 371-461 61-114 (739)
88 2x9x_A RRGB, cell WALL surface 27.4 59 0.002 33.8 5.0 62 181-249 159-223 (444)
89 3nbc_A Ricin B-like lectin; la 25.2 42 0.0014 29.6 3.0 49 185-245 15-71 (148)
90 3bwu_D FIMD, outer membrane us 24.7 70 0.0024 26.9 4.2 15 238-252 27-41 (125)
91 1tg7_A Beta-galactosidase; TIM 24.4 83 0.0028 36.2 5.9 69 370-458 692-761 (971)
92 3idu_A Uncharacterized protein 24.2 1.5E+02 0.0053 25.3 6.3 56 241-300 49-105 (127)
93 3isy_A Bsupi, intracellular pr 23.9 44 0.0015 28.7 2.7 15 238-252 89-103 (120)
94 3qdh_A Fimbrial structural sub 23.8 59 0.002 31.8 4.0 87 183-273 156-281 (290)
95 4b0m_A F1 capsule-anchoring pr 22.8 47 0.0016 28.8 2.8 19 234-252 22-40 (136)
96 3t04_D Monobody 7C12; engineer 22.5 51 0.0017 26.1 2.8 36 230-266 62-100 (103)
97 2y1v_A RRGB, cell WALL surface 20.1 36 0.0012 36.9 1.7 43 226-269 527-571 (605)
No 1
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=100.00 E-value=2.2e-105 Score=853.31 Aligned_cols=379 Identities=21% Similarity=0.284 Sum_probs=339.7
Q ss_pred ccccccCCCCCCCCCCCCccccccceeeecCCCCCCCcceEeeeeeeecccccccEEEEEeCCCCeEEEEEcCCCccccC
Q 011661 9 DNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSG 88 (480)
Q Consensus 9 d~~~~~~p~~~d~~~~~~~~l~~~ea~~~~~~~~~~~~G~~~sKY~~s~~~~d~~vhG~~~~g~~vG~W~I~~s~E~~sG 88 (480)
++++|+||+|+|+ .+++ ++.|.+ +.++|+++||||||+++||++||||+ +++||||||+||+||++|
T Consensus 118 ~~~~r~~~~p~~~---~~~~-v~~~d~-------~~l~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~sG 184 (508)
T 1nkg_A 118 PNEEPFGDVSTTA---DGTA-IEGSDV-------FLVGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSG 184 (508)
T ss_dssp CEEETTGGGGCCT---TCEE-EETTTE-------EEETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSS
T ss_pred CCccccCCCCccc---cCcE-eeeccc-------eeeCCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccccC
Confidence 4568999999986 3555 344433 44689999999999999999999999 599999999999999999
Q ss_pred CCceeccccccCC---cEEEEEeeccccCCccccccCCCCCCceeeceEEEEEcCCCCCCCcchhHHHHHHHHhhhccCC
Q 011661 89 GPLKQNLTSHVGP---TTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSW 165 (480)
Q Consensus 89 GP~kqdL~~h~g~---~~l~y~~s~H~~g~~~~~~~~~Ge~w~k~~GP~~~y~n~g~~~~~~~~l~~Da~~~~~~E~~~w 165 (480)
|||||||++|+++ ++|+||+|+|+ ++|++|.| ||||||||||+|++++ ++|
T Consensus 185 GP~kqdL~~h~~~~~~~~~~y~~s~H~----~t~~~~~g-----~~GP~~~y~n~g~~~~-----------------~~w 238 (508)
T 1nkg_A 185 GPFHRDINSNNGGSYNALYWYMNSGHV----QTESYRMG-----LHGPYSMYFSRSGTPS-----------------TSI 238 (508)
T ss_dssp CTTCBCCCEEECSSCEEEEEEEECSTT----CCSCCCCE-----EEEEEEEEEESSCCCC-----------------SCC
T ss_pred CCcchhhhccCCcccceeeeeEeeccc----cccccccc-----ccccEEEEECCCCCCC-----------------CCC
Confidence 9999999999999 89999999997 47888865 9999999999999863 599
Q ss_pred CCCCCCC---CCCCCCCCCeEEEEEEEEecCCCcc-ccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccC
Q 011661 166 PYNFPAS---EDFQKSEERGCVSGRLLVQDSNDVI-SANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRT 241 (480)
Q Consensus 166 py~f~~s---~~y~~~s~RGtVsG~v~~~d~~~~~-pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrp 241 (480)
||+|++| ++||++++||+|+|+|+ + + ++..++|+|. +++|||||+||++|+|+|++|||
T Consensus 239 pysf~~s~~~~~y~~~~~RGtVsG~V~---G---~~~~~~avv~~~-----------~k~~qywt~td~~G~FtI~~V~p 301 (508)
T 1nkg_A 239 DTSFFADLDIKGYVAASGRGKVAGTAS---G---ADSSMDWVVHWY-----------NDAAQYWTYTSSSGSFTSPAMKP 301 (508)
T ss_dssp CCGGGGGTTCTTCCCGGGCBEEEEEEE---S---SCTTSCEEEEEE-----------CSSCEEEEECCTTCEEECCCBCS
T ss_pred CCccccccCccCCcCcccccEEEEEEc---C---ccCCceEEEEEc-----------CCCceeEEEECCCCcEEeCCcCC
Confidence 9999999 99999999999999988 3 3 4445667764 59999999999999999999999
Q ss_pred cceEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcCCCCCCCeEEEeccCCCccccccCCCCccccccccccCCchh
Q 011661 242 GNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRF 321 (480)
Q Consensus 242 GtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~~~~~~~LweIG~~Drta~eF~~~d~~~~~~~k~~~~hp~~~ 321 (480)
|+|+|+||++|+ ...+.+|+|++|++++++ |+|+++ ++++|||||+|||+|.||+++|+ ..+|||+|+
T Consensus 302 GtY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~-------~~~~hp~~~ 369 (508)
T 1nkg_A 302 GTYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAAN-------QLRMHPSDS 369 (508)
T ss_dssp EEEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHH-------HTTSCTTCT
T ss_pred ceEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCc-------ccccCcchh
Confidence 999999999987 356667999999999996 999876 79999999999999999999873 235799999
Q ss_pred hcccchhcccccCCCCCeeEEeeccCCCCCceeEEEEEecCCcccCcccEEEEEEeCCCCCCCcEEEEEEEeccC-CCeE
Q 011661 322 RQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASAT-LAEL 400 (480)
Q Consensus 322 R~~glW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~-~~~~ 400 (480)
||| +|+ ||+||||+|++ +|||||||+ .++ ++|+|+|+|+++| .+++||||+||+|. ++++
T Consensus 370 r~~-~W~---------~l~ytVG~S~~-~Dw~ya~~~--~~~-----~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~ 430 (508)
T 1nkg_A 370 RMS-SWG---------PLTYTVGSSAL-TDFPMAVFK--SVN-----NPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRP 430 (508)
T ss_dssp TSC-CCC---------SCEEETTTSCG-GGSBSEEET--TTT-----CCEEEEEEECGGG-CSCEEEEEEEEEEETTCEE
T ss_pred ccc-ccC---------CeEEEeCcCch-hcCCeEEEC--CCC-----CcEEEEEEcCccc-CCceEEEEEehhhccCCCe
Confidence 999 994 79999999999 799999995 344 8999999999987 78999999999985 8999
Q ss_pred EEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCC--CCc--eEEEEEEEEec
Q 011661 401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS--PFQ--GIMYDYIRLEG 476 (480)
Q Consensus 401 ~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss--~~~--~vmyD~I~Le~ 476 (480)
+|+|||+.. +++.++.+++||||+||++||+|++++|+||+++|++|+|+|+|+++++++ +|+ +|||||||||.
T Consensus 431 qV~VN~~~~--~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~ 508 (508)
T 1nkg_A 431 QATINSYTG--SAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ 508 (508)
T ss_dssp EEEETTEEC--CCCCCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred EEEECCcCC--cCccccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence 999999754 577899999999999999999999999999999999999999999999986 588 99999999984
No 2
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=98.08 E-value=6.9e-06 Score=86.25 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=61.8
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 260 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~ 260 (480)
.+.|+|+|+..++ .|..+|.|.+.+ ....+.||.+|.|.+ .++||+|+|++.+.|+. ...
T Consensus 320 ~~~i~G~V~D~~g---~pi~gA~V~v~~-------------~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~---~~~ 379 (439)
T 2nsm_A 320 HQGIKGMVLDQNY---NNLANAVISVSG-------------INHDVTSGDHGDYFR-LLLPGIYTVSATAPGYD---PET 379 (439)
T ss_dssp SCSEEEEEECTTS---CBCTTCEEEETT-------------EEEEEECCTTSEEEE-CCCSEEEEEEEECTTEE---CEE
T ss_pred ccceEEEEEcCCC---CCccceEEEEEc-------------ccceeEECCCCeEEE-ccCCeeEEEEEEecCce---eEE
Confidence 5889999986555 888999999953 245689999999998 59999999999998865 444
Q ss_pred eEEEE-eCCceeeecceEEcCCCCCCCeEEEeccCCCcccc
Q 011661 261 ALVTI-TSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREF 300 (480)
Q Consensus 261 ~~VtV-~aG~t~~l~~l~~~~~~~~~~LweIG~~Drta~eF 300 (480)
..|+| .+++++. ++++.+. ..+|-||.+.+.+..+.
T Consensus 380 ~~v~v~~~~~~~~--~~~L~~~--~~~L~eVvV~~~~~~~~ 416 (439)
T 2nsm_A 380 VTVTVGPAEPTLV--NFHLKRS--IPQVSPVRRAPSRRHGV 416 (439)
T ss_dssp EEEEECSSSCEEC--CEECEEC-------------------
T ss_pred EEEEEecCCcceE--eEEEccC--CCccccEEEecCCCCCc
Confidence 56888 5666543 6877554 68999999988665443
No 3
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=97.99 E-value=1.9e-05 Score=81.26 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=63.4
Q ss_pred CeEEEEEEEEe-cCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeee
Q 011661 181 RGCVSGRLLVQ-DSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRS 259 (480)
Q Consensus 181 RGtVsG~v~~~-d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 259 (480)
.++|+|+|+.. ++ .|..+|.|.+.+ ....+.||.+|.|.+ +++||+|+|.+...|+. ..
T Consensus 300 ~~~i~G~V~D~~~g---~pi~~A~V~v~~-------------~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~---~~ 359 (380)
T 1h8l_A 300 HRGIWGFVLDATDG---RGILNATISVAD-------------INHPVTTYKDGDYWR-LLVQGTYKVTASARGYD---PV 359 (380)
T ss_dssp GCEEEEEEEETTTC---SBCTTCEEEETT-------------EEEEEECCTTSEEEE-CCCSEEEEEEEECTTBC---CE
T ss_pred cccceEEEEeCCCC---CccCceEEEEec-------------CcceeEECCCEEEEE-ecCCCcEEEEEEEcCcc---ce
Confidence 58999999875 44 788999999953 245789999999999 59999999999998865 44
Q ss_pred eeEEEEeCCceeeecceEEc
Q 011661 260 DALVTITSGSNIKMGDLVYE 279 (480)
Q Consensus 260 ~~~VtV~aG~t~~l~~l~~~ 279 (480)
+..|+|.+++++.+ ++.+.
T Consensus 360 ~~~v~v~~~~~~~~-~~~L~ 378 (380)
T 1h8l_A 360 TKTVEVDSKGGVQV-NFTLS 378 (380)
T ss_dssp EEEEEECSSCEEEC-CEEEC
T ss_pred EEEEEEcCCCeEEE-EEEec
Confidence 45799999988777 57764
No 4
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=1.5e-05 Score=83.78 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=61.9
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeee
Q 011661 182 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 261 (480)
Q Consensus 182 GtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~ 261 (480)
..|+|+|+..+| .|..+|.|.+.+. ....+.||++|.|.+. ++||+|+|++.+.|+.. ....
T Consensus 337 ~gv~G~V~D~~G---~pi~gA~V~v~g~------------~~~~~~Td~~G~y~~~-l~pG~Y~l~vs~~Gy~~--~~~~ 398 (435)
T 3mn8_A 337 IGIKGLVTDASG---FPIADANVYVAGL------------EEKPMRTSKRGEYWRL-LTPGLYSVHASAFGYQT--SAPQ 398 (435)
T ss_dssp SSEEEEEECSSS---CBCTTCEEEETTC------------TTSCEECCTTCEEEEC-CCSEEEEEEEEBTTBCC--CCCE
T ss_pred ceeEEEEECCCC---CccCceEEEEecc------------cccceEeCCCCeEEEe-cCCCcEEEEEEEccccc--ceEE
Confidence 459999987666 8889999999541 1345789999999885 99999999999988731 3445
Q ss_pred EEEEeCCc--eeeecceEEcCCCCCCCeEEEec
Q 011661 262 LVTITSGS--NIKMGDLVYEPPRDGPTLWEIGI 292 (480)
Q Consensus 262 ~VtV~aG~--t~~l~~l~~~~~~~~~~LweIG~ 292 (480)
.|+|.+++ .+.+ ++++++. ..+|-||.+
T Consensus 399 ~v~v~~~~~~~~~~-~~~L~~~--~~~L~~v~~ 428 (435)
T 3mn8_A 399 QVRVTNDNQEALRL-DFKLAPV--ETNFDGISS 428 (435)
T ss_dssp EEEECCCSSSCEEC-CEECCBC-----------
T ss_pred EEEEecCCcceeEE-EEEEeec--CCCCCeeEe
Confidence 69999887 3356 5777554 778888875
No 5
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=97.88 E-value=1.4e-05 Score=83.80 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=62.6
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 260 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~ 260 (480)
.+.|+|+|+..++ .|..+|.|.+.+.. .+ .-+.||.+|.|.+ .+.||+|+|.+...|+. ..+
T Consensus 295 ~~~I~G~V~D~~g---~pi~gA~V~v~g~~---------~~--~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~---~~~ 356 (426)
T 1uwy_A 295 HLGVKGQVFDQNG---NPLPNVIVEVQDRK---------HI--CPYRTNKYGEYYL-LLLPGSYIINVTVPGHD---PHI 356 (426)
T ss_dssp GCSEEEEEECTTS---CBCCSCEEEETTCC---------CS--SCCBCCTTCEEEE-CCCSEEEEEEEECSSSC---CEE
T ss_pred cceeEEEEECCCC---CccCceEEEEEecc---------cc--ceeEeCCCCEEEe-ccCCeeEEEEEEEcCcc---cEE
Confidence 5789999987555 78899999996431 11 1267999999999 59999999999998865 444
Q ss_pred eEEEEeCCc----eeeecceEEcCCCCCCCeEEEecc
Q 011661 261 ALVTITSGS----NIKMGDLVYEPPRDGPTLWEIGIP 293 (480)
Q Consensus 261 ~~VtV~aG~----t~~l~~l~~~~~~~~~~LweIG~~ 293 (480)
..|+|.+++ ++.+ ++++.+ ...+|-||.+.
T Consensus 357 ~~v~v~~~~~~~~~~~~-~~~L~~--~~~~l~evv~~ 390 (426)
T 1uwy_A 357 TKVIIPEKSQNFSALKK-DILLPF--QGQLDSIPVSN 390 (426)
T ss_dssp EEEEECSSCSSSSCEEC-CEECSS--CC---------
T ss_pred EEEEEeCCCccccceEE-EEEEec--CCccccceeec
Confidence 568898876 5555 577754 47788888774
No 6
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1
Probab=97.15 E-value=0.0025 Score=58.96 Aligned_cols=105 Identities=19% Similarity=0.305 Sum_probs=67.0
Q ss_pred CCCCCCCC--CCCCCCeEEEEEEEEec-CCCccccCceEEEecCCCC-------------CCC---------cccccccc
Q 011661 168 NFPASEDF--QKSEERGCVSGRLLVQD-SNDVISANGAYVGLAPPGD-------------VGS---------WQTECKDY 222 (480)
Q Consensus 168 ~f~~s~~y--~~~s~RGtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~-------------~g~---------~q~~~~~y 222 (480)
.+|+..+| ....+.++|+|++.+.. +....+..+..|.|.+... .|- |.-+...|
T Consensus 28 ~~Fd~~e~a~~~~~G~~tI~G~a~~~~~~G~~~~~~G~~V~L~P~T~Ys~er~~~yG~~~~g~~p~~~~~~~~dp~~~~y 107 (170)
T 1xpn_A 28 PDFPEHEYAATQQVGGGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATY 107 (170)
T ss_dssp CSSCCGGGGTCCCCCCCCEEEEECEECTTSCEECCTTEEEEEEECCTHHHHHHHHSSSEEGGGCCSSSCCCCCCTTHHHH
T ss_pred CCCCHHHHHHHhCCCCceEEEEEEEEcCCCCEEecCCCEEEEEeCCHHHHHHHHHhCccccccccccccccccCchhhcc
Confidence 34444333 33445689999998877 3345667777788853210 011 11122446
Q ss_pred ceEEEeCCCcceEeCcccCcceEEEEEE---Cc------eeeeeeeeeEEEEeCCceeee
Q 011661 223 QFWTTADEDGCFSIKNIRTGNYNLYAWV---PG------FVGDYRSDALVTITSGSNIKM 273 (480)
Q Consensus 223 qYwt~td~~G~FtI~nVrpGtY~L~a~~---~G------~~G~~~~~~~VtV~aG~t~~l 273 (480)
.--|.+|++|+|+|.+|+||+|-|.+.+ .. -.|... .+.|+|..|++.++
T Consensus 108 ~r~t~~D~~G~F~F~~Lp~G~Yyl~a~v~w~~~~~~~~~~qgg~l-~k~Vtv~~Ge~~~v 166 (170)
T 1xpn_A 108 VREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTV-TKLVTVSGSQPQKV 166 (170)
T ss_dssp CEEEEECSSCEEEECSCCSEEEEEEEEEEEEEEETTEEEEEEEEE-EEEEEECCSSCEEE
T ss_pred eeEEEecCCCcEEecCCCCccEEEEEEEeccCccccccccccceE-EEEEEeCCCcEEEE
Confidence 6679999999999999999999999842 11 112223 34599998888765
No 7
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=96.96 E-value=0.005 Score=55.87 Aligned_cols=95 Identities=22% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCCCeEEEEEEEEecCC-CccccCceEEEecCCC-------------CCCC---------ccccccccceEEEeCCCcce
Q 011661 178 SEERGCVSGRLLVQDSN-DVISANGAYVGLAPPG-------------DVGS---------WQTECKDYQFWTTADEDGCF 234 (480)
Q Consensus 178 ~s~RGtVsG~v~~~d~~-~~~pa~~a~V~L~~~~-------------~~g~---------~q~~~~~yqYwt~td~~G~F 234 (480)
..+.++|.|++.+.... ......+..|.|.+.. +... -+-+-..|..-|.+|++|+|
T Consensus 20 ~~G~~tI~G~a~~r~~~G~~~~c~g~~V~L~P~T~Y~~e~~~~~g~~~~~~r~~~~~~~~~d~~~~~y~r~t~cD~~G~F 99 (150)
T 3qec_A 20 QVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRF 99 (150)
T ss_dssp CCCCEEEEEEEEEECTTSCEEECCSCEEEEEECCHHHHHHHHHHTTCBSTTCCTTCCCCCCCTTSGGGCEEEECCTTSEE
T ss_pred CCCcceEEEEEEEECCCCCEecCCCCEEEEEeCCHHHHHHHHHhcCcccccccCCCCCCCCChhHhcceeEEEeCCCCcE
Confidence 45789999999888632 3346677778874310 0000 11234667778999999999
Q ss_pred EeCcccCcceEEEEEEC------c---eeeeeeeeeEEEEeCCceeee
Q 011661 235 SIKNIRTGNYNLYAWVP------G---FVGDYRSDALVTITSGSNIKM 273 (480)
Q Consensus 235 tI~nVrpGtY~L~a~~~------G---~~G~~~~~~~VtV~aG~t~~l 273 (480)
+|.+|+||+|-|.+.+. + ..|..... .|+|+.|++.++
T Consensus 100 ~F~~Lp~G~Yyl~a~v~w~~~~~~~~~~qgg~lmk-~V~v~ggq~~~v 146 (150)
T 3qec_A 100 DFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTK-LVTVSGSQPQKV 146 (150)
T ss_dssp EEEEECSEEEEEEEEEEEEEESSSSEEEEEEEEEE-EEEESSSCCCCE
T ss_pred EECCCCCccEEEEEEEEeccCCCCCcccccceEEE-EEEEcCCcEEEE
Confidence 99999999999988642 1 12333443 599999988654
No 8
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=96.56 E-value=0.0033 Score=68.10 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=52.4
Q ss_pred CCcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecC
Q 011661 383 NSSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRC 460 (480)
Q Consensus 383 ~~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 460 (480)
.+.++|||++.-.. ...+.|.|||..+.-| .-+. +.+.. -|+- +.-..+|+||+++|++++|+|.|+.+..
T Consensus 502 ~g~A~LRvg~gR~~g~s~~p~V~vNG~~v~vP--~~w~-g~dq~-~r~~---fFg~ieipVp~~lL~~~~NtI~VtFPD~ 574 (591)
T 4aw7_A 502 SGRASLRMSIGRPVSASKKPVVKINGTAVSVP--DNWK-GYGQS-NRNI---FFGMIEVPFDIQLLKNGDNNVDITFSDG 574 (591)
T ss_dssp SEEEEEEEEEEEETTSCSCCEEEETTEEECCC--SCCS-SCCCT-TSSE---EEEEEEEEECGGGCCSEEEEEEEECSSC
T ss_pred CceEEEEEEcCcCCCcCCCCEEEECCEEeccC--cccc-ccccc-Chhh---ceEEEEecCCHHHHhcCCCeEEEEecCC
Confidence 47899999999875 4568999999877522 2221 12221 2443 4567999999999998999999999875
Q ss_pred C
Q 011661 461 T 461 (480)
Q Consensus 461 s 461 (480)
.
T Consensus 575 G 575 (591)
T 4aw7_A 575 G 575 (591)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=96.44 E-value=0.012 Score=53.25 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=53.6
Q ss_pred EEEE-eCCCCCCCcEEEEEEEeccC------------CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEE
Q 011661 373 IKFK-LDHVDRNSSYKLRVAIASAT------------LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHV 439 (480)
Q Consensus 373 I~F~-L~~~~~~~~~tLriala~a~------------~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~ 439 (480)
|.|+ +.. +..|.|+|+|-.+... ...+.|.|||.... ...++.... .. .+....+
T Consensus 49 vtf~~V~~-~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~-----~v~fp~Tg~-----W~-~~~~~tv 116 (156)
T 2wz8_A 49 LQFNNVYV-PQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEK-----GHYFFNTRG-----WN-TYRTDII 116 (156)
T ss_dssp EEEEEEEE-SSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCE-----EEEECCCSS-----TT-CCEEEEE
T ss_pred EEEEEEec-CCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceee-----EEEeCCCCC-----CC-cceEEEE
Confidence 4444 433 3468999999988653 35699999997532 122221110 11 2445566
Q ss_pred EeeCCCeeeeecEEEEEeecCCCCCceEEEEEEEEec
Q 011661 440 NIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEG 476 (480)
Q Consensus 440 ~ipa~~L~~G~NtI~l~~~~gss~~~~vmyD~I~Le~ 476 (480)
.|+ |++|.|+|+|.-.. .+++ +.=.|+|.|..
T Consensus 117 ~V~---L~aG~NtI~~~~~~-~~~~-~pdiD~i~v~~ 148 (156)
T 2wz8_A 117 DVY---LNAGNNTIRFYNGT-SGSY-APNIDKIAIAA 148 (156)
T ss_dssp EEE---ECSEEEEEEEECCS-TTCB-CCEEEEEEEEC
T ss_pred EEE---ECCCceEEEEEecC-CCCC-CcEEEEEEEec
Confidence 666 99999999998541 1222 35678888753
No 10
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=96.28 E-value=0.023 Score=50.27 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=55.1
Q ss_pred EEEEeCCCCCCCcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 373 IKFKLDHVDRNSSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 373 I~F~L~~~~~~~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
|.|++.. +..|.|+|+|-.|... ...+.|.|||.... ..+..++... +.. .+...++.|+ |++|.
T Consensus 41 v~~~V~v-~~aG~Y~l~~ryang~~~~r~~~l~VNG~~~g---~~~v~~p~Tg-----~W~-~w~t~~~~v~---L~aG~ 107 (139)
T 2w87_A 41 VVWAIDA-TSSGRRTLTIRYANGGTANRNGSLVINGGSNG---NYTVSLPTTG-----AWT-TWQTATIDVD---LVQGN 107 (139)
T ss_dssp EEEEEEE-SSCEEEEEEEEEECCSSSCCCEEEEETTTTTC---EEEECCCCCS-----STT-CCEEEEEEEE---ECSEE
T ss_pred EEEEEEC-CCCcEEEEEEEEECCCCCCceEEEEECCEEcc---eeEEEecCCC-----CCC-ccEEEEEEEE---ECCCc
Confidence 4455432 3468999999998753 46799999997541 0011221110 000 1334445555 89999
Q ss_pred cEEEEEeecCCCCCceEEEEEEEEecCC
Q 011661 451 NTIFLKQPRCTSPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 451 NtI~l~~~~gss~~~~vmyD~I~Le~p~ 478 (480)
|+|+|....+. + ++-.|+|+|+.+.
T Consensus 108 ntI~l~~~~~~-g--~~niD~i~v~~~~ 132 (139)
T 2w87_A 108 NIVQLSATTAE-G--LPNIDSLSVVGGT 132 (139)
T ss_dssp EEEEEEESSTT-C--CCEEEEEEEESSS
T ss_pred eEEEEEEcCCC-C--CEEEEEEEEecCC
Confidence 99999965322 1 4678999998654
No 11
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=96.00 E-value=0.021 Score=50.92 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=54.1
Q ss_pred EEEEeCCCCCCCcEEEEEEEecc--CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 373 IKFKLDHVDRNSSYKLRVAIASA--TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 373 I~F~L~~~~~~~~~tLriala~a--~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
|.|++.. +..|.|+|+|-.|.. ....+.|.|||.... ...++... +.. .+...++.|+ |++|.
T Consensus 41 v~~~V~v-~~aG~Y~l~~ryang~~~~r~~~l~VNG~~~~-----~v~~p~Tg-----~W~-~w~t~~~~v~---L~aG~ 105 (145)
T 2w3j_A 41 IVWSLSA-ASAKTYTAQIRFGNGGTSARRATVVVNDSQIK-----TLDFPTNS-----NWT-QWQTVNVDIP---LKAGT 105 (145)
T ss_dssp EEEEEEE-SSCEEEEEEEEEECCSSSCCCEEEEETTEEEE-----EECCCCCS-----CTT-SCEEEEEEEE---ECSEE
T ss_pred EEEEEEC-CCCeEEEEEEEEECCCCCCeEEEEEECCeEee-----EEEecCCC-----CCC-eeEEEEEEEE---ECCCc
Confidence 4455432 346899999999854 356799999997432 11222111 110 1333444554 89999
Q ss_pred cEEEEEeecCCCCCceEEEEEEEEecCC
Q 011661 451 NTIFLKQPRCTSPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 451 NtI~l~~~~gss~~~~vmyD~I~Le~p~ 478 (480)
|+|+|....+. + ++-.|+|+|+...
T Consensus 106 ntI~l~~~~~~-g--~~niD~i~v~~~~ 130 (145)
T 2w3j_A 106 NSIKLVAETAD-G--LANIDSIRVTGNG 130 (145)
T ss_dssp EEEEEEECSTT-C--CCEEEEEEECSTT
T ss_pred eEEEEEEecCc-C--CEEEEEEEEEcCC
Confidence 99999964322 2 4778999997543
No 12
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=95.78 E-value=0.028 Score=49.67 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=53.0
Q ss_pred EEEEeCCCCCCCcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 373 IKFKLDHVDRNSSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 373 I~F~L~~~~~~~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
|.|++.. +..|.|+|+|-.+... ...+.|.|||.... ....++... +.. .+....+.|+ |++|.
T Consensus 42 v~~~V~v-~~aG~Y~l~~ryan~~~~~~~~~l~VNG~~~~----~~v~~p~Tg-----~w~-~w~~~~~~v~---L~aG~ 107 (144)
T 2w47_A 42 IEWNVNA-PSSGSYALIFRYANGTTANRPMRITVNGNIVK----PSMDFVSTG-----AWT-TWNEAGIVAN---LNQGN 107 (144)
T ss_dssp EEEEEEE-SSSEEEEEEEEEECCSSSCCCEEEEETTEEEE----EEECCCCCS-----STT-CCEEEEEEEE---ECSEE
T ss_pred EEEEEEC-CCCcEEEEEEEEECCCCCCeEEEEEECCeEee----eEEEecCCC-----CCC-eeEEEEEEEE---ECCCc
Confidence 4455432 3468899999988753 56799999997421 011121111 000 1222234443 89999
Q ss_pred cEEEEEeecCCCCCceEEEEEEEEecCC
Q 011661 451 NTIFLKQPRCTSPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 451 NtI~l~~~~gss~~~~vmyD~I~Le~p~ 478 (480)
|+|+|....+. + ++-.|+|+|+...
T Consensus 108 ntI~l~~~~~~-g--~~niD~i~v~~~~ 132 (144)
T 2w47_A 108 NVIRATAIASD-G--GPNVDYLKVFSAN 132 (144)
T ss_dssp EEEEEEECSTT-C--CCEEEEEEEEECT
T ss_pred cEEEEEEeCCC-C--CEEEeEEEEEeCC
Confidence 99999864221 1 5889999998543
No 13
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=94.88 E-value=0.11 Score=46.47 Aligned_cols=89 Identities=9% Similarity=0.098 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCee
Q 011661 369 TTWQIKFKLDHVDRNSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFI 447 (480)
Q Consensus 369 ~~w~I~F~L~~~~~~~~~tLriala~a~-~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~ 447 (480)
..=.|.|+++. +..|.|.|.|..+... ..+-.+.|||. .. .-.++.... ...+. .+ =.|.
T Consensus 34 ~gdsVtf~VdV-P~tG~YdLsI~Ya~~~G~k~n~L~VNG~-~~-----~V~fP~tt~---------~~~~~-~~--V~L~ 94 (140)
T 2bgo_A 34 AGSAVIWNVDV-PVTGEYRINLTWSSPYSSKVNTLVMDGT-AL-----SYAFAEATV---------PVTYV-QT--KTLS 94 (140)
T ss_dssp TTCEEEEEECC-CSSEEEEEEEEECCCSSEEEEEEEETTE-EE-----EEEEESCCS---------CEEEE-EE--EEEC
T ss_pred CCCEEEEEEec-CCCcEEEEEEEeccCCCCceEEEEECCc-ee-----EEEECCcCC---------cEEEE-EE--EEec
Confidence 44566666654 4578999999997653 45678999996 42 112221110 11111 11 5788
Q ss_pred eeecEEEEEeecCCCCCceEEEEEEEEecCC
Q 011661 448 EGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 448 ~G~NtI~l~~~~gss~~~~vmyD~I~Le~p~ 478 (480)
+|.|+|.|.-.+| .|-++..|+|+|+...
T Consensus 95 aG~NtI~i~~~~g--~WG~~~iD~I~l~~a~ 123 (140)
T 2bgo_A 95 AGNHSFGVRVGSS--DWGYMNVHSLKLELLG 123 (140)
T ss_dssp SSCEEEEEECCSS--SCCCCEEEEEEEEECC
T ss_pred CCccEEEEEecCC--CceeEEEEEEEEEcCC
Confidence 9999999985433 3556889999999654
No 14
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=94.53 E-value=0.11 Score=44.75 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=49.9
Q ss_pred EEEEeCCCCCCCcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 373 IKFKLDHVDRNSSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 373 I~F~L~~~~~~~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
|.|++.. +..|.|+|+|-.+... ...+.|.|||.... ....++.. ++.. .+....+.|. |++|.
T Consensus 41 v~~~V~v-~~aG~Y~l~~rya~~~~~~~~~~l~VnG~~~~----~~v~~p~t-----g~W~-~w~~~~~~v~---L~aG~ 106 (127)
T 2vzp_A 41 VEWTVTV-PSAGTYDVVVRYANGTTTSRPLDFSVNGSISA----SGVAFGST-----GTWP-AWTTKTVRVT---LAAGV 106 (127)
T ss_dssp EEEEEEE-SSSEEEEEEEEEECCSSSCCCEEEEETTEEEE----EEECCCCC-----SSTT-CCEEEEEEEE---ECSEE
T ss_pred EEEEEEc-CCCCEEEEEEEEEcCCCCCeEEEEEECCEEee----eEEEecCC-----CCCC-ceEEEEEEEE---ECCCc
Confidence 4455432 3468999999998753 57899999997431 01112111 0110 1233344443 89999
Q ss_pred cEEEEEeecCCCCCceEEEEEEEE
Q 011661 451 NTIFLKQPRCTSPFQGIMYDYIRL 474 (480)
Q Consensus 451 NtI~l~~~~gss~~~~vmyD~I~L 474 (480)
|+|+|....+.. ++-.|+|++
T Consensus 107 ntI~l~~~~~~~---~~niD~i~v 127 (127)
T 2vzp_A 107 NKIKAVATTANG---GPNVDKITL 127 (127)
T ss_dssp EEEEEEECSTTC---CCEEEEEEC
T ss_pred eEEEEEEeCCCC---CeEEEEEEC
Confidence 999999753221 466787764
No 15
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=94.13 E-value=0.089 Score=52.98 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=48.0
Q ss_pred CCeEEEEEEEEec----CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcc--eEEEEEECce
Q 011661 180 ERGCVSGRLLVQD----SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGN--YNLYAWVPGF 253 (480)
Q Consensus 180 ~RGtVsG~v~~~d----~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGt--Y~L~a~~~G~ 253 (480)
.-++|+|-|...- ........++.|-+..+ ..-+.+|++|+|+|.+|++|+ |+|.+..+|+
T Consensus 156 ~~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt-------------~~sa~tD~~G~f~I~~vp~~~~~ytl~i~~~g~ 222 (321)
T 3kcp_A 156 EGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGT-------------ELYAVTDANGYFEITGVPANASGYTLKISRATY 222 (321)
T ss_dssp SSEEEEEEEEESSCCCTTTHHHHHSCCEEEETTS-------------SCEEECCTTSEEEEEEECCEEEEEEEEEECTEE
T ss_pred CCceEEEEEccccccccccchhccCCcEEEEEec-------------cceeEECCCceEEEeccCCCCccEEEEEeecCc
Confidence 5799999887621 11224456788888653 347889999999999999999 9999999886
Q ss_pred e
Q 011661 254 V 254 (480)
Q Consensus 254 ~ 254 (480)
+
T Consensus 223 l 223 (321)
T 3kcp_A 223 L 223 (321)
T ss_dssp C
T ss_pred e
Confidence 5
No 16
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=92.43 E-value=0.28 Score=49.34 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=45.3
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccce--EEEeCCCcceEeCcccCcceE
Q 011661 180 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYN 245 (480)
Q Consensus 180 ~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~---~~yqY--wt~td~~G~FtI~nVrpGtY~ 245 (480)
++-.|+|+|...+| .|..+|.|-+-.....|....+. .+... ...||++|.|.|.-|+||.|.
T Consensus 135 ~~l~v~G~V~D~~G---~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~ 202 (312)
T 2xsu_A 135 DTLIIEGTVTDTEG---NIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYG 202 (312)
T ss_dssp CEEEEEEEEEETTS---CBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEE
T ss_pred eeEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCccc
Confidence 47899999998776 89999999885443334222110 11111 367899999999999999997
No 17
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=91.41 E-value=0.38 Score=48.39 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccce--EEEeCCCcceEeCcccCcceEE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQF--WTTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~---~~~yqY--wt~td~~G~FtI~nVrpGtY~L 246 (480)
-++=.|.|+|...+| .|..+|.|=+-.....|....+ ..+... ...||++|.|+|.-|+||-|.+
T Consensus 130 G~~l~v~G~V~D~~G---~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~~ 199 (311)
T 2azq_A 130 GVVMFLQGQVFDANG---KPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYGC 199 (311)
T ss_dssp CCEEEEEEEEECSSS---CBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEEC
T ss_pred CcEEEEEEEEEcCCC---CCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcCC
Confidence 467899999998777 8999999988544444433211 111222 3678999999999999999973
No 18
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A*
Probab=90.88 E-value=1.1 Score=38.78 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCC
Q 011661 383 NSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCT 461 (480)
Q Consensus 383 ~~~~tLriala~a~-~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gs 461 (480)
.+.++|.+-.|+.. +++++|++++ .. ++..+-.++... +. -.|...+.+|. |.+|.|+|+|....+
T Consensus 52 ~G~y~~~~rvas~~~gg~i~v~~~~-~g--~~~g~~~vp~Tg-----gw-~~w~t~~~~v~---l~~G~h~l~l~~~~g- 118 (131)
T 1uxz_A 52 SGSYLIEYRVASQNGGGSLTFEEAG-GA--PVHGTIAIPATG-----GW-QTWTTIQHTVN---LSAGSHQFGIKANAG- 118 (131)
T ss_dssp SEEEEEEEEEEESSCCEEEEEEETT-SC--SEEEEEEECCCS-----EE-EEEEEEEEEEE---ECSEEECEEEEEEEC-
T ss_pred CCceEEEEEEECCCCCcEEEEEECC-CC--CEeeEEEeCCCC-----CC-cccEEEEEEEE---eCCCeEEEEEEEcCC-
Confidence 57788888887754 6899999986 11 222233333221 11 12444555553 679999999998765
Q ss_pred CCCceEEEEEEEEec
Q 011661 462 SPFQGIMYDYIRLEG 476 (480)
Q Consensus 462 s~~~~vmyD~I~Le~ 476 (480)
++-.|.|+|+.
T Consensus 119 ----~~nld~~~f~~ 129 (131)
T 1uxz_A 119 ----GWNLNWIRINK 129 (131)
T ss_dssp ----CCEEEEEEEEE
T ss_pred ----CEEEEEEEEEE
Confidence 47889888863
No 19
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=90.72 E-value=0.26 Score=48.17 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccc-e-EEEeCCCcceEeCcccCcceEE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQ-F-WTTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~---~~yq-Y-wt~td~~G~FtI~nVrpGtY~L 246 (480)
-++-.|.|+|...+| +|..+|.|=+-.....|....+. .+.. . ...||++|.|+|.-|+||.|.+
T Consensus 100 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg~Y~~ 169 (254)
T 2boy_A 100 GDTLIFRGEVVDQEG---APLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEI 169 (254)
T ss_dssp SCEEEEEEEEECTTS---CBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCccccC
Confidence 467899999998776 89999999884443334222111 1111 2 2678999999999999999964
No 20
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=89.66 E-value=0.34 Score=47.55 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---cccc-ce-EEEeCCCcceEeCcccCcceEE
Q 011661 180 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDY-QF-WTTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 180 ~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~---~~~y-qY-wt~td~~G~FtI~nVrpGtY~L 246 (480)
++=.|+|+|...+| +|..+|.|=+-.....|-...+ .... -+ ...||++|.|.|.-|+||-|-+
T Consensus 98 ~pl~v~G~V~D~~G---~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~TD~~G~y~F~TI~P~~Ypi 166 (260)
T 3th1_A 98 KPLIIRGTVRSDTG---ELLAGAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNYRVRTTMPVPYQI 166 (260)
T ss_dssp CEEEEEEEEEETTS---CBCSSCEEEEEECCTTSCCTTTSTTCCTTBTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred CEEEEEEEEECCCC---CCcCCcEEEEEecCCCCcccCcCCCCCCCCCceEEEeCCCCEEEEEEECCCCCCC
Confidence 45789999998776 8999999988544444432211 1111 22 3668999999999999999954
No 21
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=89.58 E-value=0.78 Score=44.50 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=47.4
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc------cccce----EEEeCCCcceEeCcccCcceEE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC------KDYQF----WTTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~------~~yqY----wt~td~~G~FtI~nVrpGtY~L 246 (480)
-++=.|.|+|...+| +|..+|.|=+-.....|....+. .+..| ...||++|.|+|.-|+||-|..
T Consensus 76 G~~i~v~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Yp~ 150 (241)
T 2bum_B 76 GERVIVHGYVRDQFG---RPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPW 150 (241)
T ss_dssp SCEEEEEEEEEETTS---CBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCCEEE
T ss_pred CcEEEEEEEEECCCC---CCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCCcccc
Confidence 357789999998776 89999999885554445333211 12233 2568999999999999999975
No 22
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=89.44 E-value=0.55 Score=45.50 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=47.6
Q ss_pred CCCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc------ccccce--E--EEeCCCcceEeCcccCcceEE
Q 011661 177 KSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE------CKDYQF--W--TTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 177 ~~s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~------~~~yqY--w--t~td~~G~FtI~nVrpGtY~L 246 (480)
+.-++=.|.|+|...+| +|..+|.|=+-.....|....+ ..+..| + ..||++|.|+|.-|+||-|..
T Consensus 73 ~~G~~i~l~G~V~D~~G---~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Yp~ 149 (238)
T 3t63_M 73 PIGERIIVAGRVVDQYG---KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPAPW 149 (238)
T ss_dssp CSSCEEEEEEEEEETTS---CBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCCEEE
T ss_pred CCCcEEEEEEEEECCCC---CCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEEEECCcCccC
Confidence 34467899999998776 8999999988544444433211 111223 3 578999999999999999975
No 23
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}
Probab=88.60 E-value=2 Score=45.23 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=55.4
Q ss_pred EEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecE
Q 011661 373 IKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENT 452 (480)
Q Consensus 373 I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~Nt 452 (480)
|.|++.. ...|.++|.+-.|+..++.++|+||+.... .+-.++..- +. -.|...+.+|. |.+|.|+
T Consensus 398 ~~y~v~~-~~~G~y~~~~rvas~~gg~i~v~~d~~~~~----g~~~vp~Tg-----gw-~~w~t~~~~v~---l~~G~~~ 463 (491)
T 2y8k_A 398 LEYTIRV-RNPGYYNLSLRVAGISGSRVQVSFGNQDKT----GVWELPATG-----GF-QTWTTATRQVF---LGAGLQK 463 (491)
T ss_dssp EEEEEEE-SSCEEEEEEEEEEECTTCEEEEEETTEESS----CSEECCCCS-----EE-EEEEEEEEEEE---ECSEEEE
T ss_pred EEEEEec-CCCccEEEEEEEEcCCCceEEEEECCccce----eEEEeCCCC-----CC-cccEEEEEEEE---eCCcEEE
Confidence 4455432 235788888888876688999999996421 111121111 11 12455555553 7899999
Q ss_pred EEEEeecCCCCCceEEEEEEEEecCC
Q 011661 453 IFLKQPRCTSPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 453 I~l~~~~gss~~~~vmyD~I~Le~p~ 478 (480)
|+|+...| ++-.|.|+|+..+
T Consensus 464 l~l~~~~g-----~~nld~~~f~~~~ 484 (491)
T 2y8k_A 464 LRINALSG-----GFNLNWIELSPIL 484 (491)
T ss_dssp EEEEESSS-----SEEEEEEEEEEC-
T ss_pred EEEEEecC-----CEEEEEEEEecCC
Confidence 99997765 4889999998654
No 24
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=88.44 E-value=0.55 Score=46.83 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=47.0
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccccc--ccceE--EEeCCCcceEeCcccCcceEE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECK--DYQFW--TTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~--~yqYw--t~td~~G~FtI~nVrpGtY~L 246 (480)
.++=.|.|+|...+| +|..+|.|=+-.....|....+.. +..++ ..||++|.|+|.-|+||-|.+
T Consensus 131 G~~l~v~G~V~D~~G---~Pv~~A~VEiWqada~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Yp~ 199 (293)
T 1tmx_A 131 GEPCWVEGTVTDTDG---NPVPDARIEVWEADDDGFYDVQYDDDRTAARAHLLSGPDGGYAFWAITPTPYPI 199 (293)
T ss_dssp SCEEEEEEEEEETTS---CBCTTCEEEEECCCTTSCCGGGSSSCCCCSEEEEECCTTSEEEEEEECCCCEEC
T ss_pred CCEEEEEEEEECCCC---CCCCCceeEEEecCCCCcccCCccCCCCCceeEEEeCCCceEEEEEECCCcccC
Confidence 357899999998776 899999999854444443322111 23333 567999999999999999964
No 25
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=87.71 E-value=0.7 Score=43.84 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccccc------ccce----EEEe-CCCcceEeCcccCcceE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECK------DYQF----WTTA-DEDGCFSIKNIRTGNYN 245 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~------~yqY----wt~t-d~~G~FtI~nVrpGtY~ 245 (480)
-++=.|.|+|...+| +|..+|.|=+-.....|....+.. +..| ...| |++|.|+|.-|+||-|.
T Consensus 50 G~~l~v~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~TI~Pg~yp 124 (209)
T 2bum_A 50 GQRIRLEGQVFDGLG---LPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVP 124 (209)
T ss_dssp SCEEEEEECEECTTS---CBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEEEECCCCCB
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEEEEccCccc
Confidence 356789999997666 899999998855544453332111 2233 2567 99999999999999986
No 26
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=87.14 E-value=0.53 Score=47.30 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=44.5
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc-----ccccceE--EEeCCCcceEeCcccCcceEE
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE-----CKDYQFW--TTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~-----~~~yqYw--t~td~~G~FtI~nVrpGtY~L 246 (480)
+=.|.|+|...+| .|..+|.|=+-.....|....+ ..+...+ ..||++|.|+|.-|+||-|.+
T Consensus 133 ~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Yp~ 202 (311)
T 1dmh_A 133 TLILHGTIFDADG---KPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVRTILPAGYGC 202 (311)
T ss_dssp EEEEEEEEECTTS---CBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred eEEEEEEEEcCCC---CCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEEEEcCCcccC
Confidence 5789999998776 8899999988444334433211 1112222 668999999999999999964
No 27
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=87.09 E-value=0.67 Score=46.15 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=47.1
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccceE--EEeCCCcceEeCcccCcceEE
Q 011661 179 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQFW--TTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 179 s~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~---~~~yqYw--t~td~~G~FtI~nVrpGtY~L 246 (480)
.++-.|.|+|...+| +|..+|.|=+-.....|....+ ..+...+ ..||++|.|+|.-|+||-|.+
T Consensus 127 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~TI~Pg~Yp~ 196 (290)
T 3n9t_A 127 GVPALVYGRVLDVQG---RPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQTTVPVCYPI 196 (290)
T ss_dssp SCEEEEEEEEEETTS---CBCSSCEEEEECCCTTSCCTTTSTTSCTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred CCeEEEEEEEECCCC---CCCCCCEEEEEccCCCCCcCCCCCCCCCCCceeEEEeCCCceEEEEEeCCCCcCC
Confidence 357899999998776 8999999988554444533321 1122233 578999999999999999975
No 28
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=86.41 E-value=1.7 Score=39.06 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecC
Q 011661 382 RNSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRC 460 (480)
Q Consensus 382 ~~~~~tLriala~a~-~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 460 (480)
..|.|+|.+-.|+.. ++.++|+|||.... +....-.++. .+. -.+...+. ..=.|.+|.|+|+|....+
T Consensus 77 ~aG~Y~i~~rvas~~~g~~i~l~vdg~~~~-~~~g~~~vp~------tGW-~~w~t~t~--~~v~L~aG~htL~l~~~g~ 146 (160)
T 2cdp_A 77 QAGNYTISYQAGSGVTGGSIEFLVNENGSW-ASKTVTAVPN------QGW-DNFQPLNG--GSVYLSAGTHQVRLHGAGS 146 (160)
T ss_dssp SCEEEEEEEEEEBSSSSCEEEEEEECSSSE-EEEEEEECCB------SCT-TCCEEEEE--EEEEECSEEEEEEEEECSS
T ss_pred CCcEEEEEEEEEcCCCCceEEEEECCCCCc-eeeeEEEcCC------CCC-ceeEEeee--eEEEeCCCeEEEEEEEECC
Confidence 368899988888864 67899999996210 0011111111 111 11222222 1234679999999996543
Q ss_pred CCCCceEEEEEEEEe
Q 011661 461 TSPFQGIMYDYIRLE 475 (480)
Q Consensus 461 ss~~~~vmyD~I~Le 475 (480)
+.+ ++-.|.|+|.
T Consensus 147 -~~~-~~Nld~~~f~ 159 (160)
T 2cdp_A 147 -NNW-QWNLDKFTLS 159 (160)
T ss_dssp -SSB-CCEEEEEEEE
T ss_pred -CCC-cEEEEEEEEE
Confidence 222 3577888875
No 29
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=85.87 E-value=0.73 Score=45.67 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=44.7
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccce--EEEeCCCcceEeCcccCcceEE
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~---~~yqY--wt~td~~G~FtI~nVrpGtY~L 246 (480)
+=.|.|+|...+| +|..++.|=+-.....|....+. .+... ...||++|.|+|.-|+||-|-+
T Consensus 131 pl~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~TI~Pg~Yp~ 198 (280)
T 3hhy_A 131 PLVFSGQVTDLDG---NGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEITTIQPAPYQI 198 (280)
T ss_dssp EEEEEEEEECTTS---CBCSSCEEEEECCCTTSCCTTSSTTSCTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred EEEEEEEEECCCC---CCCCCcEEEEEecCCCCCCCCCCCCCCCCcceEEEEeCCCceEEEEEECCcCcCC
Confidence 4589999998776 89999999885444444332211 11222 3578999999999999999964
No 30
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=85.85 E-value=0.73 Score=43.46 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=45.0
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccceE--EEeCCC-cceEeCcccCcceEE
Q 011661 180 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQFW--TTADED-GCFSIKNIRTGNYNL 246 (480)
Q Consensus 180 ~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~---~~yqYw--t~td~~-G~FtI~nVrpGtY~L 246 (480)
++=.|+|+|...+| +|..+|.|=+-.....|....+. .+...+ ..||++ |.|+|.-|+||-|..
T Consensus 47 ~~l~v~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~~G~~~F~TI~Pg~Y~~ 116 (200)
T 3t63_A 47 EHILLLGQVYDGNG---HLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNN 116 (200)
T ss_dssp CEEEEEECEECTTS---CBCSSCEEEEEECCTTSCCCCBCCTTSSBCSEEEEECCSSCCSEEEEEECCCCEEC
T ss_pred CEEEEEEEEECCCC---CCCCCCEEEEEccCCCCCcCCCCCCCCCccccceEecCCCCCEEEEEEECCcCcCC
Confidence 46789999997776 89999999884433334322211 112233 568998 999999999999974
No 31
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=84.59 E-value=1.2 Score=43.71 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred EEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeEEEEeCCceeeecceEE
Q 011661 226 TTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVY 278 (480)
Q Consensus 226 t~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~ 278 (480)
+.+|+-|.|-+..+.+|.|+|.+.+.|+ ....++.| .|+.+.||+|.|
T Consensus 227 ~~~d~~G~f~~~~l~~G~y~v~v~a~g~----p~~~~~~~-~~~~~~lg~v~l 274 (274)
T 1ti6_B 227 AETNFFGEFKFDALDNGEYTVEIDADGK----SYSDTVVI-DDKSVDLGFIKL 274 (274)
T ss_dssp EECCTTSEEEEEEECSEEEEEEEEETTE----EEEEEEEE-SSSCEEEEEEEC
T ss_pred EeecCcCcEEEeccCCcceEEEEecCCC----CccceeEE-ccCccccceeeC
Confidence 5679999999999999999999999764 33356888 788888987753
No 32
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=83.97 E-value=1.3 Score=43.38 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=45.6
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc----ccccceE--EEeCCCcceEeCcccCcceEE
Q 011661 180 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE----CKDYQFW--TTADEDGCFSIKNIRTGNYNL 246 (480)
Q Consensus 180 ~RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~----~~~yqYw--t~td~~G~FtI~nVrpGtY~L 246 (480)
++-.|+|+|...+| +|..+|.|=+-.....|....+ ......+ ..||++|.|+|.-|+||-|-+
T Consensus 102 ~~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Yp~ 171 (257)
T 3o5u_A 102 DRMRFTGSVRDTSG---TPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPYEI 171 (257)
T ss_dssp CEEEEEEEEECTTC---CBCTTCEEEEECCCTTSCCTTSCTTSCSSCTTEEEECCCTTSEEEEEEECCCCEEC
T ss_pred CEEEEEEEEECCCC---CCCCCcEEEEEecCCCCCCCCcCCCCCcccCceeEEEeCCCceEEEEEECCCCcCC
Confidence 46789999998766 8999999988554444533211 1112233 568999999999999999953
No 33
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=83.81 E-value=10 Score=32.87 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCC
Q 011661 383 NSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCT 461 (480)
Q Consensus 383 ~~~~tLriala~a~-~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gs 461 (480)
.+.++|.+-+|+.. ++.++|++++... ++..+-.++... + --.|...+.+|+ +.+|.+.|+|....+.
T Consensus 58 ~G~~~~~~rvas~~~gg~iev~~d~~~G--~~~gt~~v~~Tg-----g-w~~w~t~~~~v~---~~~G~h~l~l~f~g~~ 126 (142)
T 1w9s_A 58 RDASSIEVRVASDTPGGRIEIRTGSPTG--TLLGDVQVPNTG-----G-WQQWQTVTGNVQ---IQPGTYDVYLVFKGSP 126 (142)
T ss_dssp SCEEEEEEEEEESSSCEEEEEEESSTTS--CEEEEEEECCCS-----E-EEEEEEEEEEEE---ECSEEEEEEEEEESCT
T ss_pred CCcEEEEEEEEcCCCCeEEEEEECCCCC--eEEEEEEeCCCC-----C-CcccEEEEEEEc---cCCcEEEEEEEEECCC
Confidence 46677777777654 6899999998643 222223333221 1 114555566654 4689999999876432
Q ss_pred CCCceEEEEEEEEec
Q 011661 462 SPFQGIMYDYIRLEG 476 (480)
Q Consensus 462 s~~~~vmyD~I~Le~ 476 (480)
+.. .+-.|.++++.
T Consensus 127 ~~~-~~nld~~~f~~ 140 (142)
T 1w9s_A 127 EYD-LMNVNWFVFRA 140 (142)
T ss_dssp TSC-CCEEEEEEEEC
T ss_pred Ccc-eEEEEEEEEEe
Confidence 221 25678888774
No 34
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=81.35 E-value=1.6 Score=38.31 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCeEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE----eCcccCcceEEEEEE
Q 011661 180 ERGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWV 250 (480)
Q Consensus 180 ~RGtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~Ft----I~nVrpGtY~L~a~~ 250 (480)
.++.|+=+|+... | +||.++.|.|......++|+. -.-+.||++|+.. -..+.+|.|+|..-.
T Consensus 8 ~~~~LStHVLDt~~G---~PAagv~V~L~~~~~~~~w~~-----l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~t 75 (127)
T 2h4e_A 8 SKXPLMVKVLDAVRG---SPAINVAVHVFRKAADDTWEP-----FASGKTSESGELHGLTTEEEFVEGIYKVEIDT 75 (127)
T ss_dssp --CCEEEEEEETTTT---EECTTCEEEEEEECTTSCEEE-----EEEEECCTTSEECCSCCTTTCCSEEEEEEECH
T ss_pred CcCCEEEEEecCCCc---CCCCCCEEEEEEeCCCCCeEE-----EEEeecCCCccccCcCCCCCccceEEEEEEEh
Confidence 3677888776544 5 999999999964211122432 3346789999872 345889999999853
No 35
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=79.62 E-value=3.4 Score=43.19 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCeEEEEEEEEec---CC---CccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEEC
Q 011661 180 ERGCVSGRLLVQD---SN---DVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVP 251 (480)
Q Consensus 180 ~RGtVsG~v~~~d---~~---~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~ 251 (480)
+-++|.|.|=.-. |. ...+..++.|-|..+. ...---+.||++|.|.|.++.||+|++.+-.+
T Consensus 304 G~~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~d~~---------G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P 372 (429)
T 3irp_X 304 GFGGFGGYVWFDKNNDGVQNDSNAAAAGITVNLLDPT---------GIRLATTTTDITGHYNFDNLTNGNYLVEFVMP 372 (429)
T ss_dssp CEEEEEEEEEECTTSSSSSCCSSCBCTTCEEEEECTT---------SCEEEEEECCTTSEEEEEEEESEEEEEEECCC
T ss_pred ceEEEccEEEEeCCCCCCcCcCCCCcCCeEEEEEcCC---------CCEEEEEEeCCCCeEEeCCCCCCcEEEEEECC
Confidence 4467777765421 11 2357788999997431 11234678999999999999999999987654
No 36
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=79.21 E-value=17 Score=31.19 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=47.7
Q ss_pred CcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCC
Q 011661 384 SSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCT 461 (480)
Q Consensus 384 ~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gs 461 (480)
+.+++.+-+|+.. ++.++|++++... ++..+-.++... +. -.|...+.+|+ +.+|...|+|.. .|
T Consensus 51 G~~~~~~rvas~~~~gg~ievr~ds~~G--~~~gt~~v~~Tg-----gw-~~~~~~~~~v~---~~~G~h~l~l~f-~G- 117 (133)
T 1uxx_X 51 GANSFKARVASGADTPTNIQLRLGSPTG--TLIGTLTVASTG-----GW-NNYEEKSCSIT---NTTGQHDLYLVF-SG- 117 (133)
T ss_dssp CEEEEEEEEEECCSSCEEEEEEESSTTS--EEEEEEEECCCS-----EE-EEEEEEEEEEE---EECSEEEEEEEE-SS-
T ss_pred CcEEEEEEEEeCCCCCcEEEEEECCCCC--cEEEEEEeCCCC-----CC-ceEEEEEEEEc---cCCcEEEEEEEE-EC-
Confidence 5666666666643 5699999998643 222223333221 11 14555556654 468999999976 45
Q ss_pred CCCceEEEEEEEEecCC
Q 011661 462 SPFQGIMYDYIRLEGPP 478 (480)
Q Consensus 462 s~~~~vmyD~I~Le~p~ 478 (480)
.+-.|.++++.+.
T Consensus 118 ----~~nl~~~~f~~~g 130 (133)
T 1uxx_X 118 ----PVNIDYFIFDSNG 130 (133)
T ss_dssp ----CCEEEEEEEECC-
T ss_pred ----CcEEEEEEEEcCC
Confidence 3678888888653
No 37
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum}
Probab=79.16 E-value=14 Score=31.53 Aligned_cols=79 Identities=11% Similarity=0.224 Sum_probs=45.9
Q ss_pred CcEEEEEEEecc-CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCC
Q 011661 384 SSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS 462 (480)
Q Consensus 384 ~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss 462 (480)
+.+++.+-+|++ .++.++|++++... ++..+-.++... + -..|...+.+|+ +.+|...|+|....++
T Consensus 49 G~~~~~~rvas~~~gg~ievrlds~~G--~~~g~~~v~~Tg-----g-w~~~~t~~~~v~---~~~G~h~l~l~f~g~~- 116 (129)
T 2v4v_A 49 GVGGFQARVASATSGGNIEIRLDSSTG--TLIGTCPVAGTG-----D-WQTYTDAKCTVS---GVTGKHDVYLVFKGDS- 116 (129)
T ss_dssp CCCEEEEEEEESSCCEEEEEEESSTTS--CEEEEEEECCCS-----E-EEEEEEEEEECC---CCEEEEEEEEEEECSS-
T ss_pred CeEEEEEEEEcCCCCcEEEEEECCCCC--eEEEEEEecCCC-----C-CceeEEEEEEEc---cCCceEEEEEEEECCC-
Confidence 455555555554 46799999997643 222333333221 1 123555555553 5699999999976543
Q ss_pred CCceEEEEEEEEe
Q 011661 463 PFQGIMYDYIRLE 475 (480)
Q Consensus 463 ~~~~vmyD~I~Le 475 (480)
+.+ +-.|.++++
T Consensus 117 ~~~-~nld~~~f~ 128 (129)
T 2v4v_A 117 GYL-FNLNWFTFS 128 (129)
T ss_dssp SCC-CEEEEEEEE
T ss_pred Cce-EEEEEEEEE
Confidence 221 566777765
No 38
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=78.73 E-value=2.3 Score=36.67 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=40.9
Q ss_pred CCeEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE----eCcccCcceEEEEEE
Q 011661 180 ERGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWV 250 (480)
Q Consensus 180 ~RGtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~Ft----I~nVrpGtY~L~a~~ 250 (480)
+|+.|+=+|+... | +||.++.|.|..... +.|+. ---+.||++|+.. -..+.+|.|+|..-.
T Consensus 2 ~~~~lstHVLDt~~G---~PAagv~V~L~~~~~-~~~~~-----l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~t 68 (114)
T 2g2n_A 2 QQNILSVHILNQQTG---KPAADVTVTLEKKAD-NGWLQ-----LNTAKTDKDGRIKALWPEQTATTGDYRVVFKT 68 (114)
T ss_dssp --CCEEEEEEETTTT---EECCSCEEEEEEECS-SSEEE-----EEEEECCTTSEESCCSCSSCCCSEEEEEEECH
T ss_pred CCCCeEEEEecCCCc---CCCCCCEEEEEEeCC-CCcEE-----EEEEecCCCCccccccCCCCCCceEEEEEEEh
Confidence 5677888876544 5 999999999964211 12332 2345689999862 235788999999853
No 39
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=76.89 E-value=15 Score=29.86 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=36.1
Q ss_pred EEEEEecCCCccccCceEEEecCCCCCCCccccccccceE----EEeCCCcceEeCcccCcceEEEEEECceeee
Q 011661 186 GRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFW----TTADEDGCFSIKNIRTGNYNLYAWVPGFVGD 256 (480)
Q Consensus 186 G~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYw----t~td~~G~FtI~nVrpGtY~L~a~~~G~~G~ 256 (480)
=+|...+| +|+.+|.|-+.- . |. ..|+ ..||++|.|++. +=-|+-.+.|..+|..|+
T Consensus 5 v~V~d~~G---kPV~gA~Vefe~-------y--Ny-ae~~~~~~~~TD~~G~~s~~-~G~Gd~~v~A~k~G~~g~ 65 (82)
T 3e8v_A 5 VLVTDAEG---QPVADATVEFKV-------Y--NY-AEFYTVATKHTDRSGHASLT-AGKGDMLVWASKDGRFGY 65 (82)
T ss_dssp EEEECTTS---CBCTTCEEEEEE-------E--ET-TEEEEEEEEECCTTSEEEEE-CCSEEEEEEEEETTEEEE
T ss_pred EEEEcCCC---CCCCCCEEEEEE-------E--Ec-hheeEEEEEEECCCceEEEE-EcCCceEEEeccCCEEEE
Confidence 34555556 888888777631 0 01 2333 357999999996 455777777777876653
No 40
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=73.71 E-value=3.1 Score=36.09 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=38.8
Q ss_pred EEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcce----EeCcccCcceEEEEEE
Q 011661 183 CVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF----SIKNIRTGNYNLYAWV 250 (480)
Q Consensus 183 tVsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~F----tI~nVrpGtY~L~a~~ 250 (480)
.|+=+|+... | +||.++.|-|......++|+. -.-+.||++|+. .-..+.+|.|+|..-.
T Consensus 3 ~lstHVLDt~~G---~PAagv~V~L~~~~~~~~~~~-----l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~t 67 (119)
T 1oo2_A 3 PLMVKILDAVKG---TPAGSVALKVSQKTADGGWTQ-----IATGVTDATGEIHNLITEQQFPAGVYRVEFDT 67 (119)
T ss_dssp SEEEEEEETTTT---EECTTCEEEEEEECTTSCEEE-----EEEEECCTTSCCTTCSCGGGCCSEEEEEEECH
T ss_pred ceeEEEecCCCc---CCCCCCEEEEEEeCCCCCcEE-----EEEEecCCCCcccCcCCCCCCCceEEEEEEEh
Confidence 3455554332 5 999999999964211123432 334678999986 2335789999999853
No 41
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=73.24 E-value=1.8 Score=49.78 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCCCCcEEEEEEEeccC--C--CeEEEEEcCCCCCCCcccc-cccCCCCeeeceeeeeeeEEEEEEeeCCC
Q 011661 371 WQIKFKLDHVDRNSSYKLRVAIASAT--L--AELQVRVNDPNANRPLFTT-GLIGRDNAIARHGIHGLYLLYHVNIPGTR 445 (480)
Q Consensus 371 w~I~F~L~~~~~~~~~tLriala~a~--~--~~~~V~vNg~~~~~p~~~~-~~~~~~~~i~R~~~~G~~~~~~~~ipa~~ 445 (480)
.+=.|+|+... .....|.|-+..-. . .+-+|.|||+.++. . +.+ +-.-.|.||+++
T Consensus 855 yr~~f~L~~p~-g~d~pl~L~lg~~~~~~~~~~~~~~VNG~~iGr----y~~~~--------------~pqr~y~VP~gi 915 (971)
T 1tg7_A 855 YSTSFDLDLPS-GYDIPLYFNFGNSTSTPAAYRVQLYVNGYQYGK----YVNNI--------------GPQTSFPVPEGI 915 (971)
T ss_dssp EEEEEECCCCT-TEECCEEEEECCCCSSCCCEEEEEEETTEEEEE----EETTT--------------CSCCEEEECBTT
T ss_pred EEEEEeccCCC-CCCceEEEEcCCCCCCCccceEEEEECCEEEee----ecCCC--------------CCCEEEECCHHH
Confidence 35678876642 22223444332211 1 48999999997641 1 011 133468999999
Q ss_pred e-eeeecEEEEEeec
Q 011661 446 F-IEGENTIFLKQPR 459 (480)
Q Consensus 446 L-~~G~NtI~l~~~~ 459 (480)
| ++|.|+|.|++..
T Consensus 916 Ln~~G~N~i~vrv~~ 930 (971)
T 1tg7_A 916 LNYHGTNWLALSLWA 930 (971)
T ss_dssp BCTTSEEEEEEEEEE
T ss_pred hCcCCccEEEEEEec
Confidence 9 9999999997754
No 42
>4hg6_B Cellulose synthase subunit B; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=71.80 E-value=1.7 Score=47.97 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=51.5
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEecc-----CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeC
Q 011661 369 TTWQIKFKLDHVDRNSSYKLRVAIASA-----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPG 443 (480)
Q Consensus 369 ~~w~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa 443 (480)
..-.+.|.++.+ ...++|+|..+.+ ..+.++|.|||+.+. +-.+..... ....+|+||+
T Consensus 61 ~~~~~~f~l~~v--Vt~A~L~L~Yt~SPsLlPe~S~LkV~LNge~VG-----tlpl~~~~~---------~~~~~i~Ipp 124 (707)
T 4hg6_B 61 ARAAFRLFLPTE--AVGGTLTLAQRSSIDILPESSQIIVRMNDQEIG-----RFTPRQFGA---------LGAVTMPLGE 124 (707)
T ss_dssp SEEEEEEECSSC--CTTCCBBCEEECSSCCCBTTBEEEEEETTEEEE-----EECCCCCSS---------CCCBCCCCCS
T ss_pred CceeEEEEccch--heeEEEEEEEeeCccccCccceEEEEECCEEEE-----EEecCCCCC---------ceeEEEecCh
Confidence 456777888773 4567777777765 358999999998664 112222111 2445999998
Q ss_pred CCeeeeecEEEEEeec
Q 011661 444 TRFIEGENTIFLKQPR 459 (480)
Q Consensus 444 ~~L~~G~NtI~l~~~~ 459 (480)
.|..|.|.|.|....
T Consensus 125 -~l~~gfN~L~fe~ig 139 (707)
T 4hg6_B 125 -AVRAGDNLVTIEAQH 139 (707)
T ss_dssp -SSCSSEEEEEEEEEC
T ss_pred -HHcCCcceEEEEEcC
Confidence 899999999999764
No 43
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=71.63 E-value=6.6 Score=33.89 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=41.0
Q ss_pred CCeEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEe---CcccCcceEEEEEE
Q 011661 180 ERGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI---KNIRTGNYNLYAWV 250 (480)
Q Consensus 180 ~RGtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI---~nVrpGtY~L~a~~ 250 (480)
+-+.|+=+|+... | +||.++.|-|... + ..-.-+.||+||+... ..+.+|+|+|..-.
T Consensus 8 ~M~~lstHVLDt~~G---~PAagv~V~L~~~--------~--~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~t 69 (116)
T 3qva_A 8 HMSTLSTHILDISTG---TPAEGVTVSLSRE--------G--ETLANLVTNAQGRIATFSAAPLPAGRYCLTAET 69 (116)
T ss_dssp -CBCEEEEEEETTTT---EECTTCEEEEEET--------T--EEEEEEECCTTSEECCSCSSCBCSSEEEEEECH
T ss_pred ccCCeeeEEeecCCC---cCCCCCEEEEEEc--------c--EeEEEeccCCCCCccccccccCCCceEEEEEeH
Confidence 3466888776543 5 9999999999632 1 2234467999998642 45789999999853
No 44
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=71.44 E-value=4.9 Score=34.59 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=34.0
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcce----EeCcccCcceEEEEEE
Q 011661 197 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF----SIKNIRTGNYNLYAWV 250 (480)
Q Consensus 197 ~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~F----tI~nVrpGtY~L~a~~ 250 (480)
+||.++.|.|......++|+. -.-+.||++|+. .-..+.+|.|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~~~~~~~-----l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~t 66 (115)
T 1f86_A 14 SPAINVAVHVFRKAADDTWEP-----FASGKTSESGELHGLTTEEEFVEGIYKVEIDT 66 (115)
T ss_dssp EECTTCEEEEEEECTTSCEEE-----EEEEECCTTSEECCSCCTTTCCSEEEEEEECH
T ss_pred CcCCCCEEEEEEcCCCCCcEE-----EEEeecCCCccccCcCCCCCCcceEEEEEEEh
Confidence 999999999964211122332 334678999987 2346789999999853
No 45
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=70.67 E-value=33 Score=30.87 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=48.8
Q ss_pred CcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCCC
Q 011661 384 SSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP 463 (480)
Q Consensus 384 ~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss~ 463 (480)
+.++|.+-+|++.++.++|++++... ++..+-.++...+ --.|...+.+|+ +.+|...|+|.. .|
T Consensus 90 G~~~~~~rvas~~~G~ievrlds~~G--~~lgt~~vp~Tgg------w~~w~tvt~~v~---~~~G~hdLylvf-~G--- 154 (168)
T 1od3_A 90 GATSVTARVATQNATTIQVRLGSPSG--TLLGTIYVGSTGS------FDTYRDVSATIS---NTAGVKDIVLVF-SG--- 154 (168)
T ss_dssp CEEEEEEEEECSSCEEEEEEESSTTS--CEEEEEEECCCSS------TTCCEEEEEEEE---EECSEEEEEEEE-SS---
T ss_pred CcEEEEEEEEcCCCcEEEEEECCCCC--cEEEEEEeCCCCC------CcccEEEEEEEc---CCCcEEEEEEEE-EC---
Confidence 66777777777667899999998643 2222233332111 114566666665 468999999976 45
Q ss_pred CceEEEEEEEEec
Q 011661 464 FQGIMYDYIRLEG 476 (480)
Q Consensus 464 ~~~vmyD~I~Le~ 476 (480)
++-.|.++++.
T Consensus 155 --~~nldw~~F~~ 165 (168)
T 1od3_A 155 --PVNVDWFVFSK 165 (168)
T ss_dssp --CCEEEEEEEEC
T ss_pred --CcEEEEEEEEe
Confidence 37788888874
No 46
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=70.38 E-value=5 Score=35.99 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=42.6
Q ss_pred CeEEEEEEEEe-cCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE----eCcccCcceEEEEEE
Q 011661 181 RGCVSGRLLVQ-DSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWV 250 (480)
Q Consensus 181 RGtVsG~v~~~-d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~Ft----I~nVrpGtY~L~a~~ 250 (480)
|.-++=+|+.. .| +||.++.|-|.....+|+|+. -.-+.||++|+.. -....+|.|+|..-.
T Consensus 29 k~PLTtHVLDt~~G---~PA~gv~V~L~~~~~~~~~~~-----l~~~~Td~DGR~~~ll~~~~~~~G~Y~L~F~t 95 (147)
T 4ank_A 29 KCPLMVKVLDAVRG---SPAINVAVHVFRKAADDTWEP-----FASGKTSESGELHGLTTEEEFVEGIYKVEIDT 95 (147)
T ss_dssp -CCEEEEEEETTTT---EECCSCEEEEEEECTTSCEEE-----EEEEECCTTSEECCSCCTTTCCSEEEEEEECH
T ss_pred CCCeEEEEEeCCCC---cCCCCCEEEEEEECCCCCeEE-----EEEEEeCCCCCCCCCCCccccCCceEEEEEEH
Confidence 55688887643 36 999999999975433334543 3346799999864 245788999998753
No 47
>4hg6_B Cellulose synthase subunit B; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=69.16 E-value=5.8 Score=43.87 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=53.2
Q ss_pred cEEEEEEeCCCCC---CCcEEEEEEEecc----CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEee
Q 011661 370 TWQIKFKLDHVDR---NSSYKLRVAIASA----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIP 442 (480)
Q Consensus 370 ~w~I~F~L~~~~~---~~~~tLriala~a----~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ip 442 (480)
.-.|.|.|..+.- ...++|.|..+-+ ..+++.|.|||+-+. +..+.+.. .|....+++.||
T Consensus 319 ~i~V~FrLPPDLfvw~~tga~L~L~YRYSp~l~~~S~L~VsLNgqfV~-----SlPL~~~~-------~g~~~~~~IpLP 386 (707)
T 4hg6_B 319 NRDIDFQLPDDWLLLASQKAQIGIDYGFAGGLPEGALLLVKVNGTTVR-----MLPLDRDA-------APVKPRLDIRFP 386 (707)
T ss_dssp EEEEEEECCSSCCCCSSCEEEEEECEEECSSCCTTCEEEEEETTEEEE-----EEESSSCC-------BSSCCCEEEEEE
T ss_pred CceeEEeCCCCeecccCCCceEEEEEecCCCCCCCCeEEEEECCEEEE-----EEEcCccc-------CCccceeEeecC
Confidence 5578888877652 2456666666654 258999999998664 12222211 134566899999
Q ss_pred CCCeeeeecEEEEEee
Q 011661 443 GTRFIEGENTIFLKQP 458 (480)
Q Consensus 443 a~~L~~G~NtI~l~~~ 458 (480)
+.+|+.|.|.|.|...
T Consensus 387 p~ll~~g~NqL~FeF~ 402 (707)
T 4hg6_B 387 ARLLHPGPNRLSFESV 402 (707)
T ss_dssp GGGCCSSEEEEEEEEE
T ss_pred HHHcCCCCceEEEEEE
Confidence 9999889999999864
No 48
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=68.74 E-value=38 Score=29.59 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=47.6
Q ss_pred CcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCCC
Q 011661 384 SSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP 463 (480)
Q Consensus 384 ~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss~ 463 (480)
+.+++.+-+|++.++.++|++++... ++..+-.++..-+ --.|...+.+|. +.+|...|+|.. .|
T Consensus 68 G~~~~~~rvas~~gg~ievrlds~~G--~~lgt~~v~~Tgg------w~~w~tv~~~v~---~~~G~h~lyl~f-~g--- 132 (145)
T 1uy4_A 68 GATGFSATVATEVNTSIQIRSDSPTG--TLLGTLYVSSTGS------WNTYNTVSTNIS---KITGVHDIVLVF-SG--- 132 (145)
T ss_dssp CEEEEEEEEECSSCEEEEEEESSTTS--CEEEEEEECCCSS------TTCCEEEEEEEE---EECSEEEEEEEE-SS---
T ss_pred CCEEEEEEEEeCCCcEEEEEECCCCC--cEEEEEEecCCCC------CcccEEEEEEec---CCCceEEEEEEE-eC---
Confidence 56666666666667899999998643 2333333332210 113566666664 368999999986 45
Q ss_pred CceEEEEEEEEec
Q 011661 464 FQGIMYDYIRLEG 476 (480)
Q Consensus 464 ~~~vmyD~I~Le~ 476 (480)
++-.|.++++.
T Consensus 133 --~~nl~~~~F~~ 143 (145)
T 1uy4_A 133 --PVNVDNFIFSR 143 (145)
T ss_dssp --CCEEEEEEEEE
T ss_pred --CeEEEEEEEEe
Confidence 37778888874
No 49
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=67.30 E-value=1.1 Score=51.63 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccC--CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeee
Q 011661 372 QIKFKLDHVDRNSSYKLRVAIASAT--LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 449 (480)
Q Consensus 372 ~I~F~L~~~~~~~~~tLriala~a~--~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 449 (480)
.|.|++.. +..|.|+|+|-.|... ...+.|.|||..... +..++... +.. .+...++.| .|++|
T Consensus 945 ~v~~~V~v-~~aG~Y~l~iryan~~~~~r~~~l~VNG~~~~~----~v~~~~Tg-----~W~-~w~~~~~~v---~L~aG 1010 (1032)
T 2vzs_A 945 SVEWTVTV-PSAGTYDVVVRYANGTTTSRPLDFSVNGSISAS----GVAFGSTG-----TWP-AWTTKTVRV---TLAAG 1010 (1032)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEC-CCCeEEEEEEEEEcCCCCCeeEEEEECCeEeee----EEEecCCC-----CCC-ccEEEEEEE---EECCC
Confidence 35666543 4478999999888754 467899999975310 11111110 110 133333433 38999
Q ss_pred ecEEEEEeecCCCCCceEEEEEEEE
Q 011661 450 ENTIFLKQPRCTSPFQGIMYDYIRL 474 (480)
Q Consensus 450 ~NtI~l~~~~gss~~~~vmyD~I~L 474 (480)
.|+|+|....+. + ++=.|+|.+
T Consensus 1011 ~NtI~~~~~~~~-g--~~niD~i~v 1032 (1032)
T 2vzs_A 1011 VNKIKAVATTAN-G--GPNVDKITL 1032 (1032)
T ss_dssp -------------------------
T ss_pred ceEEEEEEcCCc-C--ceEEEEEEC
Confidence 999999864221 1 466677754
No 50
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=66.73 E-value=4.1 Score=44.94 Aligned_cols=69 Identities=25% Similarity=0.154 Sum_probs=47.2
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeee
Q 011661 370 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 449 (480)
Q Consensus 370 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 449 (480)
-.+=.|.+++........|++.. ....-.|.|||+.++ .-.|-+.-++|+|+ ..|+.|
T Consensus 63 wYr~~f~~p~~~~~~~~~L~f~g---v~~~a~V~vNG~~vg------------------~~~~g~~~f~~dIt-~~l~~G 120 (692)
T 3fn9_A 63 YYRKTQFFPHDLEGKRVFLRFEG---VGACAEVYVNGKLAG------------------THKGGYSAFACEIG-TALKLG 120 (692)
T ss_dssp EEEEEEEECGGGTTCEEEEEESC---CBSEEEEEETTEEEE------------------EEECTTSCEEEECG-GGCCTT
T ss_pred EEEEEEEECchhCCCeEEEEECC---ccEeeEEEECCEEee------------------eEcCCcceEEEECh-HhcCCC
Confidence 44567888765433345555543 346678999998552 11234567899998 788998
Q ss_pred -ecEEEEEeecC
Q 011661 450 -ENTIFLKQPRC 460 (480)
Q Consensus 450 -~NtI~l~~~~g 460 (480)
+|+|.+.+.+.
T Consensus 121 ~~N~l~V~v~~~ 132 (692)
T 3fn9_A 121 AENEIIVKADNK 132 (692)
T ss_dssp EEEEEEEEEECC
T ss_pred CceEEEEEEECC
Confidence 89999998754
No 51
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=66.68 E-value=12 Score=42.51 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=49.3
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEE--Cceeeeee
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYR 258 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~ 258 (480)
.|+|+-+=... ...+..+|...|....+ .....-..||++|.++|.+++||+|+|.=-. .|+.-+ .
T Consensus 47 ~G~~~i~K~d~---~~~~L~GA~F~l~~~~~--------~~~~~~~tTd~~G~~~~~~L~~G~Y~l~Et~AP~GY~l~-~ 114 (893)
T 2ww8_A 47 IGKVVIKETGE---GGALLGDAVFELKNNTD--------GTTVSQRTEAQTGEAIFSNIKPGTYTLTEAQPPVGYKPS-T 114 (893)
T ss_dssp CEEEEEEEECS---TTCBCCCCEEEEEETTT--------CCEEEEECCTTTCEEEEEEECSEEEEEEEEECCTTBCCC-C
T ss_pred eEEEEEEEECC---CCCccCCCEEEEEECCC--------CeEEEEEEECCCCeEEECCCCCCcEEEEEccCCCceecC-C
Confidence 56666443322 23788999988864321 1112224589999999999999999998775 443311 1
Q ss_pred eeeEEEEeCCceee
Q 011661 259 SDALVTITSGSNIK 272 (480)
Q Consensus 259 ~~~~VtV~aG~t~~ 272 (480)
..-.|+|++.+.+.
T Consensus 115 ~~~~v~v~~~g~~~ 128 (893)
T 2ww8_A 115 KQWTVEVEKNGRTT 128 (893)
T ss_dssp CEEEEEECTTCCEE
T ss_pred ccEEEEECCCceEE
Confidence 22347776554443
No 52
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=63.39 E-value=7.6 Score=36.85 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=45.2
Q ss_pred ccccCceEEEecCCCCCCCc-ccccccc-------ceEEEeCCCcceEeCcccCcceEEEEEE--CceeeeeeeeeEEEE
Q 011661 196 VISANGAYVGLAPPGDVGSW-QTECKDY-------QFWTTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRSDALVTI 265 (480)
Q Consensus 196 ~~pa~~a~V~L~~~~~~g~~-q~~~~~y-------qYwt~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV 265 (480)
..+..+|...|+... |.. .....++ .--..||++|.|+|.++++|+|.|.=-. .|+.=. ...-.++|
T Consensus 140 ~~~L~GA~F~l~~~~--g~~~~~~~~g~~~~~~~~~~~~~Td~~G~~~~~~L~~G~Y~l~EtkAP~GY~l~-~~~~~f~i 216 (239)
T 2pz4_A 140 KKPLAGVVFELYEKN--GRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIG-QAETAVTI 216 (239)
T ss_dssp EEECCSCEEEEEETT--CSSCBCEETTEECCSTTCBSCEECCTTSEEEEEEEESEEEEEEEEECCTTBCCC-CSEEEEEE
T ss_pred CcccCCCEEEEEeCC--CCEEEeecccceecccccceEEEECCCCeEEECCCCCceEEEEEEECCCCcCcC-CccEEEEE
Confidence 367888988886431 111 1000000 0123589999999999999999987653 343210 11246888
Q ss_pred eCCceeee
Q 011661 266 TSGSNIKM 273 (480)
Q Consensus 266 ~aG~t~~l 273 (480)
++++++.+
T Consensus 217 ~~~~~~~~ 224 (239)
T 2pz4_A 217 EKSKTVTV 224 (239)
T ss_dssp CTTSEEEE
T ss_pred eCCCeEEE
Confidence 88876554
No 53
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Probab=61.59 E-value=6.9 Score=42.28 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred EEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 371 WQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 371 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
.+-.|.+++........|++.. ....-.|.|||+.++ .-.|-+.-++++|+ ..|+.|+
T Consensus 71 Y~~~f~~p~~~~~~~~~L~f~g---v~~~a~V~vNG~~vg------------------~~~~~~~p~~~dit-~~l~~G~ 128 (605)
T 3lpf_A 71 YQREVFIPKGWAGQRIVLRFDA---VTHYGKVWVNNQEVM------------------EHQGGYTPFEADVT-PYVIAGK 128 (605)
T ss_dssp EEEEEECCTTCSSCEEEEEESC---CBSEEEEEESSCEEE------------------EECCSSSCEEEECG-GGCCTTS
T ss_pred EEEEEECCcccCCCEEEEEECC---cceEEEEEECCEEEE------------------EEcCCCCcceeech-hhccCCC
Confidence 4456888765433345555543 345678999998552 11234567899998 7888998
Q ss_pred c-EEEEEeec
Q 011661 451 N-TIFLKQPR 459 (480)
Q Consensus 451 N-tI~l~~~~ 459 (480)
| +|++.+.+
T Consensus 129 nn~l~V~v~n 138 (605)
T 3lpf_A 129 SVRITVCVNN 138 (605)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEEec
Confidence 6 89998843
No 54
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=61.14 E-value=9 Score=38.65 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred ccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEE
Q 011661 196 VISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 196 ~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~ 250 (480)
.++..+|...|.... +....--..||++|.++|.++++|+|.|.=..
T Consensus 19 ~~~L~GA~F~l~~~~--------g~~~~~~~tTd~~G~~~~~~L~~G~Y~~~Et~ 65 (355)
T 3kpt_A 19 EKAMAGAVFSLFKKD--------GTEVKKELATDANGHIRVQGLEYGEYYFQETK 65 (355)
T ss_dssp GCBCCSCEEEEEETT--------SCEEEEEEECCTTSEEEEEEEESEEEEEEEEE
T ss_pred CCCcCCcEEEEEECC--------CCEEEEEEEECCCCeEEECCcCCceEEEEEEe
Confidence 378889999886421 11111234689999999999999999987653
No 55
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=60.47 E-value=16 Score=40.14 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=41.6
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEE
Q 011661 181 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAW 249 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~ 249 (480)
.|...-++.+.|.....++..+.|.|..+ .+..|+++++.+|...|..+.||+|+|++-
T Consensus 445 ~~~~~~~v~vtd~~~~~~~~~~~v~l~~~----------~~~~~~~~t~~dg~~~~~~~~~G~Y~~~v~ 503 (671)
T 1r6v_A 445 GGVEEFQVVVTDAKGNFGVPTVFVSMMRD----------NGSCYYAKTGPDGIARFPHIDSGTYDIFVG 503 (671)
T ss_dssp SEEEEEEEEEECTTSCSBCTTEEEEEECS----------SSCCEEEECCTTSEEEEEEEECEEEEEEEE
T ss_pred CCccceEEEEecCCCCcCcceeEEEEecC----------CCceEecccCCCCceeeeccCceEEEEEEe
Confidence 34433455666632233344566777654 355799999999999999999999999985
No 56
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=60.46 E-value=6 Score=43.21 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=46.0
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeee
Q 011661 369 TTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 448 (480)
Q Consensus 369 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 448 (480)
...+=.|.+++........|++..+ ...-.|.|||+.++ . -.|-+.-++|+|.. .|+.
T Consensus 51 ~wYr~~f~~p~~~~~~~~~L~f~gv---~~~a~V~vNG~~vg----------------~--~~~~~~~~~~dit~-~l~~ 108 (667)
T 3cmg_A 51 GNYEKALYIRPEWKGKRLFLRFDGV---NSIADVFINRKHIG----------------E--HRGGYGAFIFEITD-LVKY 108 (667)
T ss_dssp EEEEEEEECCGGGTTSEEEEEESCC---BSEEEEEETTEEEE----------------E--EECSSSCEEEECTT-TSCT
T ss_pred EEEEEEEECCcccCCCEEEEEECCc---cceeEEEECCEEEe----------------e--ecCCcccEEEECCH-HHCC
Confidence 3445678887643223355555433 45678999998552 0 12445678899986 6888
Q ss_pred e-ecEEEEEeec
Q 011661 449 G-ENTIFLKQPR 459 (480)
Q Consensus 449 G-~NtI~l~~~~ 459 (480)
| +|+|.+.+.+
T Consensus 109 G~~N~l~V~v~~ 120 (667)
T 3cmg_A 109 GEKNSVLVRANN 120 (667)
T ss_dssp TSEEEEEEEEEC
T ss_pred CCCcEEEEEEec
Confidence 8 8999999865
No 57
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3
Probab=58.20 E-value=6.4 Score=45.48 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=44.9
Q ss_pred cEEEEEEeCCCC--CC-CcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCe
Q 011661 370 TWQIKFKLDHVD--RN-SSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 446 (480)
Q Consensus 370 ~w~I~F~L~~~~--~~-~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 446 (480)
-.+=.|++++.. .. ....|++..+ .....|.|||+.++ . -.|-+.-++|+|. ..|
T Consensus 121 wYrr~F~vp~~~~~~g~~rv~L~F~gv---~~~a~V~vNG~~VG-------~-----------~~gg~~p~~~DIT-~~L 178 (1024)
T 1yq2_A 121 DFRRRFDVPAQWFESTTAALTLRFDGV---ESRYKVWVNGQEIG-------V-----------GSGSRLAQEFDVS-DAL 178 (1024)
T ss_dssp EEEEEEEECGGGGSTTEEEEEEEESCE---ESCEEEEETTEEEE-------E-----------ECCTTSCEEEECT-TTC
T ss_pred EEEEEeEECchHhcCCCceEEEEECCC---CceEEEEECCEEEE-------E-----------EeCCccceEEecH-Hhc
Confidence 345578887653 22 2344555433 34578999998552 0 1244567889997 678
Q ss_pred eeeecEEEEEeec
Q 011661 447 IEGENTIFLKQPR 459 (480)
Q Consensus 447 ~~G~NtI~l~~~~ 459 (480)
+.|+|+|.+.+.+
T Consensus 179 k~G~N~L~V~V~~ 191 (1024)
T 1yq2_A 179 RAGSNLLVVRVHQ 191 (1024)
T ss_dssp CSEEEEEEEEEES
T ss_pred cCCCcEEEEEEEe
Confidence 9999999999964
No 58
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=56.43 E-value=6.7 Score=45.27 Aligned_cols=68 Identities=21% Similarity=0.128 Sum_probs=45.7
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeee
Q 011661 370 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 449 (480)
Q Consensus 370 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 449 (480)
-.+=.|++++........|++..+ .....|.|||+.++ .-.|-+.-++|+|.. .|+.|
T Consensus 129 ~Yrr~F~vp~~~~g~~v~L~F~gv---~~~a~V~vNG~~vG------------------~~~gg~~p~~~DIT~-~L~~G 186 (1010)
T 3bga_A 129 SYRRTFKVPADWKGRRVVLCCEGV---ISFYYVWVNGKLLG------------------YNQGSKTAAEWDITD-VLSEG 186 (1010)
T ss_dssp EEEEEEECCGGGTTSEEEEEESCE---ESEEEEEETTEEEE------------------EEECSSSCEEEECGG-GCCSS
T ss_pred EEEEEeEeCcccCCCEEEEEECCC---CceeEEEECCEEEe------------------eEeCCCCcceeehhh-hccCC
Confidence 345568887654333355555433 34678999998552 012446678999984 78899
Q ss_pred ecEEEEEeec
Q 011661 450 ENTIFLKQPR 459 (480)
Q Consensus 450 ~NtI~l~~~~ 459 (480)
+|+|.+.+.+
T Consensus 187 ~N~L~V~V~~ 196 (1010)
T 3bga_A 187 ENVVALEVYR 196 (1010)
T ss_dssp EEEEEEEEES
T ss_pred CcEEEEEEEe
Confidence 9999999864
No 59
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=55.82 E-value=6.9 Score=34.77 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=41.3
Q ss_pred CeEEEEEEEEec-CCCccccCceEEEecCCCC-CCCccccccccceEEEeCCCcceE--e--CcccCcceEEEEEE
Q 011661 181 RGCVSGRLLVQD-SNDVISANGAYVGLAPPGD-VGSWQTECKDYQFWTTADEDGCFS--I--KNIRTGNYNLYAWV 250 (480)
Q Consensus 181 RGtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~-~g~~q~~~~~yqYwt~td~~G~Ft--I--~nVrpGtY~L~a~~ 250 (480)
++.|+=+|+... | +||.++.|-|..... .+.|.. -.-+.||++|+.. + ..+.+|+|+|..-.
T Consensus 25 ~~~LTtHVLDt~~G---~PAagv~V~L~~~~~~~~~w~~-----l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~t 92 (138)
T 3iwv_A 25 LSPLSTHVLNIAQG---VPGANMTIVLHRLDPVSSAWNI-----LTTGITNDDGRCPGLITKENFIAGVYKMRFET 92 (138)
T ss_dssp -CCEECCEEETTTT---EECTTCEEEEEEECSSSCCEEE-----EEEEECCTTSCCTTSSCTTTCCSEEEEEEECH
T ss_pred CCCceEEEeecCCc---cCCCCCEEEEEEECCCCCCcEE-----EEEEecCCCCCcCCccCcccCCCceEEEEEeh
Confidence 577887766443 5 899999999964221 123321 2335799999864 2 35889999999864
No 60
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=55.12 E-value=14 Score=32.10 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=39.6
Q ss_pred eEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcce-----EeCcccCcceEEEEEE
Q 011661 182 GCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF-----SIKNIRTGNYNLYAWV 250 (480)
Q Consensus 182 GtVsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~F-----tI~nVrpGtY~L~a~~ 250 (480)
+.|+=+|+... | +||.++.|.|.... |+ ...-+.||+||+. .-..+++|.|+|..-.
T Consensus 9 ~~lstHVLDt~~G---~PAagv~V~L~~~~----~~-----~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~t 71 (121)
T 2h0e_A 9 GKLTTHILDLTCG---KPAANVKIGLKRLG----ES-----IMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHA 71 (121)
T ss_dssp CEEECCEEETTTT---EECTTCEEEEEETT----SC-----CCEEEECCTTSSCSSCSEEGGGCCSEEEEEEECH
T ss_pred CCeeEEEecCCCc---CCCCCCEEEEEECC----ce-----EEEEEecCCCCCccCCcCCCCCcCceEEEEEEEh
Confidence 45666655433 5 99999999996421 22 2445779999986 3346889999999753
No 61
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=54.91 E-value=23 Score=30.42 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=30.5
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEE
Q 011661 197 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 197 ~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~ 250 (480)
++..+|...|.... | +--.-|+ ++|.++|.++++|+|+|.=-.
T Consensus 40 ~~L~GA~F~l~~~~--g------~~v~~~~---sdG~~~~~~L~~G~Y~l~Etk 82 (121)
T 2x5p_A 40 KELAGATMELRDSS--G------KTISTWI---SDGQVKDFYLMPGKYTFVETA 82 (121)
T ss_dssp CBCCCCEEEEECTT--S------CEEEEEE---CCSSCEEEEECSEEEEEEEEE
T ss_pred CCcCCCEEEEEECC--C------CEEEEEE---eCCEEEEcccCCcEEEEEEEe
Confidence 67888988887431 1 1122344 479999999999999997653
No 62
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A*
Probab=54.87 E-value=66 Score=33.29 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=47.8
Q ss_pred CcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCCC
Q 011661 384 SSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP 463 (480)
Q Consensus 384 ~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss~ 463 (480)
+.++|++-+|+.+++.++|++++... ++..+-.++...+ -..++..+.+| .. .+|.+.|+|....+.+.
T Consensus 406 g~~~~~~~vas~~~g~ievr~~s~~G--~~~g~~~v~~tgg------~~~w~~~~~~v--~~-~~G~h~ly~~f~g~~~~ 474 (487)
T 3c7f_A 406 GARSFKANVASTLGGKIEVRLDSADG--KLVGTLNVPSTGG------AQTWREIETAV--SG-ATGVHKVFFVFTGTGTG 474 (487)
T ss_dssp CEEEEEEEEEESSCEEEEEEESSTTS--CEEEEEEECCCSE------EEEEEEEEEEC--CS-CCSEEEEEEEEECSCSS
T ss_pred CccEEEEEEEeCCCcEEEEEECCCCC--cEEEEEEeCCCCC------CcccEEEEEEE--cC-CCceEEEEEEEECCCCc
Confidence 56777777777678899999987643 2323333332211 12345555555 33 58999999987654211
Q ss_pred CceEEEEEEEEe
Q 011661 464 FQGIMYDYIRLE 475 (480)
Q Consensus 464 ~~~vmyD~I~Le 475 (480)
.-+-+|.++++
T Consensus 475 -~l~~~~~~~f~ 485 (487)
T 3c7f_A 475 -NLFNFDYWQFT 485 (487)
T ss_dssp -CCCEEEEEEEE
T ss_pred -ceEEEEEEEEE
Confidence 12566777775
No 63
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}
Probab=54.30 E-value=8.9 Score=43.07 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 371 WQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 371 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
.+=.|++++........|++..+ ...-.|.|||+.++ . -.|-|..++|+|+. .|+.|+
T Consensus 70 Yrk~f~vp~~~~~~~v~L~f~gv---~~~a~V~vNG~~vG-------~-----------~~~g~~pf~~DIT~-~Lk~G~ 127 (801)
T 3gm8_A 70 YRKTFTIPSKWKNKKVQILFEGV---YLNSEVWINGHWLG-------K-----------RPNGYISFVYDLTP-YLQEGK 127 (801)
T ss_dssp EEEEEECCSGGGSCEEEEEESCC---BSCEEEEETTEEEE-------E-----------ECCSSCCEEEECGG-GCCSSE
T ss_pred EEEEEEcCcccCCCEEEEEECcc---ceEEEEEECCEEee-------c-----------ccCCcccEEEECcH-hccCCC
Confidence 45578887654333455555433 45678999998552 0 11335678999976 578999
Q ss_pred cEEEEEeecC
Q 011661 451 NTIFLKQPRC 460 (480)
Q Consensus 451 NtI~l~~~~g 460 (480)
|+|.+.+.+.
T Consensus 128 N~L~V~V~n~ 137 (801)
T 3gm8_A 128 NQIAVKVDHS 137 (801)
T ss_dssp EEEEEEEEEC
T ss_pred cEEEEEEECC
Confidence 9999998754
No 64
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus}
Probab=52.19 E-value=24 Score=34.95 Aligned_cols=97 Identities=15% Similarity=0.313 Sum_probs=56.9
Q ss_pred EEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeEEE
Q 011661 185 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVT 264 (480)
Q Consensus 185 sG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~Vt 264 (480)
+|+++...+ ...+.++.|.+ |.......|-|+..+.+|.|+|.|+..|.+ +.
T Consensus 67 SGKcLDV~g--~sTadGa~V~q--------W~~nGg~NQqW~l~~~~G~y~I~n~~SGkc------------------LD 118 (286)
T 3phz_A 67 AGSYMDLAG--HAATDGTAIIG--------YRPTGGDNQKWIISQINDVWKIKSKETGTF------------------VT 118 (286)
T ss_dssp TCCEEEEGG--GCCSTTEEEEE--------ECCCCCGGGCEEEEESSSCEEEEETTTCCE------------------EE
T ss_pred CCcEEEeCC--CcCCCCCeEEE--------eCCCCChhcEEEEEcCCCeEEEEECCCCcE------------------EE
Confidence 466554432 12456777877 444456779998877789999999888853 22
Q ss_pred EeCCceeeecc-eEEcCC-CCCCCeEEEeccCCCcccc-----ccCCCCccc
Q 011661 265 ITSGSNIKMGD-LVYEPP-RDGPTLWEIGIPDRSAREF-----NVPDPDPKY 309 (480)
Q Consensus 265 V~aG~t~~l~~-l~~~~~-~~~~~LweIG~~Drta~eF-----~~~d~~~~~ 309 (480)
|..|.++.-+. .+|+.. ....+.|++..-..++.++ ++|+..+.+
T Consensus 119 V~~gsttanGaV~qWt~~tgg~NQqW~~~~vs~tg~~i~~~l~~~p~~~~~~ 170 (286)
T 3phz_A 119 LLNGDGGGTGTVVGWQNITNNTSQNWTFQKLSQTGANVHATLLACPALRQDF 170 (286)
T ss_dssp EETC---CCCEEEEESCCCSSCTTCEEEEECEEEHHHHHHHHHHCTTTCSCC
T ss_pred eCCCCcCCCceEEEccCCCCCccCcEEEEEccCCcccceehhccCCccCCCE
Confidence 22222211111 245421 2567999998777777665 345555544
No 65
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Probab=50.60 E-value=15 Score=42.33 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=42.0
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccC---CCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCee-
Q 011661 372 QIKFKLDHVDRNSSYKLRVAIASAT---LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFI- 447 (480)
Q Consensus 372 ~I~F~L~~~~~~~~~tLriala~a~---~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~- 447 (480)
+=.|+|+-..+.-...|.+-+.... .-|.++.|||+..+.=+ +.+ | -..+|.||.+.|.
T Consensus 888 rt~f~LdlP~~g~Dvpl~~~f~~~~~~~~yRa~lfVNG~q~Gkyv---~~i------------G--PQt~FpvP~GILn~ 950 (1003)
T 3og2_A 888 AAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYV---SNI------------G--PQTEFPVPEGILDY 950 (1003)
T ss_dssp EEEEEEECCTTTEECCEEEEECCCSSCCCEEEEEEETTEEEEEEE---TTT------------C--CCCEEEECBTTBCT
T ss_pred EEEeecCCCcccCceeEEEEECCCCCCcceEEEEEEeceeeeeec---CCC------------C--CcceecCCcccccC
Confidence 3456665320111233444443332 35999999998664100 111 1 2357999999999
Q ss_pred eeecEEEEEe
Q 011661 448 EGENTIFLKQ 457 (480)
Q Consensus 448 ~G~NtI~l~~ 457 (480)
.|+|+|-|++
T Consensus 951 ~G~Ntialal 960 (1003)
T 3og2_A 951 NGDNWIGVAL 960 (1003)
T ss_dssp EEEEEEEEEE
T ss_pred CCcceEEEEE
Confidence 8999999988
No 66
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Probab=50.25 E-value=9.5 Score=42.98 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=43.4
Q ss_pred EEEEEeCCCC-CCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 372 QIKFKLDHVD-RNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 372 ~I~F~L~~~~-~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
+=.|.+++.. ......|++..+ ...-.|.|||+.++ .-.|-+.-++|+|+. .|+.|+
T Consensus 69 r~~f~~p~~~~~~~~~~L~f~gv---~~~a~V~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~G~ 126 (848)
T 2je8_A 69 RTSFIVSEEQLNRDGIQLIFEGL---DTYADVYLNGSLLL------------------KADNMFVGYTLPVKS-VLRKGE 126 (848)
T ss_dssp EEEEEECHHHHTSSEEEEEESCC---BSEEEEEETTEEEE------------------EECBTTCCEEEECGG-GCCSEE
T ss_pred EEEEEcChhhcCCCeEEEEECCC---CceeEEEECCEEec------------------cccCCCCCEEEcChH-hhcCCC
Confidence 3458876532 223455555433 45678999998552 112446778999987 788999
Q ss_pred cEEEEEee
Q 011661 451 NTIFLKQP 458 (480)
Q Consensus 451 NtI~l~~~ 458 (480)
|+|.+.+.
T Consensus 127 N~L~V~v~ 134 (848)
T 2je8_A 127 NHLYIYFH 134 (848)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEe
Confidence 99999974
No 67
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=49.00 E-value=81 Score=33.16 Aligned_cols=74 Identities=18% Similarity=0.114 Sum_probs=46.5
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeC--cccCcceEEEEEECceeeeeee
Q 011661 182 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK--NIRTGNYNLYAWVPGFVGDYRS 259 (480)
Q Consensus 182 GtVsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~--nVrpGtY~L~a~~~G~~G~~~~ 259 (480)
-+++-+|+..+| .|..+..|.+..+.. . .-..--..||++|.+++. .-++|+|+++|..+|. .+
T Consensus 28 ~~ltatV~D~~G---npv~g~~Vtf~~~~g--~-----~~~~~t~~Td~~G~a~~tltst~aG~~~VtAt~~g~----s~ 93 (492)
T 1cwv_A 28 ITVEFTVADFEG---KPLAGQEVVITTNNG--A-----LPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQ----RQ 93 (492)
T ss_dssp EEEEEEEECTTS---CBCCSCEEEEECCTT--C-----BSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETTE----EE
T ss_pred EEEEEEEEcCCC---CCCCCCEEEEEECCC--c-----cccccceeeCCCceEEEEEEcCcceEEEEEEEECCc----cc
Confidence 445555554445 677777887764321 1 111234578999987754 5689999999998773 23
Q ss_pred eeEEEEeCCc
Q 011661 260 DALVTITSGS 269 (480)
Q Consensus 260 ~~~VtV~aG~ 269 (480)
...|++.+|.
T Consensus 94 s~~v~f~a~~ 103 (492)
T 1cwv_A 94 SVDTHFVKGT 103 (492)
T ss_dssp EEEEEEECCC
T ss_pred eeEEEEeecc
Confidence 3456666654
No 68
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=48.26 E-value=6.9 Score=37.14 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred EEEeCCCcceEeCcccCcceEEEEEE
Q 011661 225 WTTADEDGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 225 wt~td~~G~FtI~nVrpGtY~L~a~~ 250 (480)
-..||++|.++|.++++|+|.|.=..
T Consensus 71 ~~tTd~~G~~~~~~L~~G~Y~v~Et~ 96 (239)
T 2pz4_A 71 EATTNQQGKATFNQLPDGIYYGLAVK 96 (239)
T ss_dssp EEECCTTSEEEEEEEESEEEEEEEEE
T ss_pred EEEECCCCeEEECCCCCeeEEEEEEE
Confidence 34689999999999999999987543
No 69
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Probab=46.30 E-value=8.5 Score=44.46 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=45.1
Q ss_pred cEEEEEEeCCCCC-CCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeee
Q 011661 370 TWQIKFKLDHVDR-NSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 448 (480)
Q Consensus 370 ~w~I~F~L~~~~~-~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 448 (480)
..+-.|++++... .....|++..+ .....|.|||+.++ . -.|-+.-++|+|.. .|+.
T Consensus 122 ~Yrr~F~vp~~~~~~~~v~L~F~gv---~~~a~V~vNG~~vG----------------~--~~gg~~p~~~DIT~-~L~~ 179 (1023)
T 1jz7_A 122 CYSLTFNVDESWLQEGQTRIIFDGV---NSAFHLWCNGRWVG----------------Y--GQDSRLPSEFDLSA-FLRA 179 (1023)
T ss_dssp EEEEEEEECHHHHHSSEEEEEESCE---ESEEEEEETTEEEE----------------E--EECTTSCEEEECTT-TCCS
T ss_pred EEEEEEEeCchhcCCCEEEEEECCC---CcceEEEECCEEEc----------------c--ccCCCCceEEecHh-hccC
Confidence 4556788865432 23355555433 34678999998552 0 12335578899976 7889
Q ss_pred eecEEEEEeec
Q 011661 449 GENTIFLKQPR 459 (480)
Q Consensus 449 G~NtI~l~~~~ 459 (480)
|+|+|.+.+.+
T Consensus 180 G~N~L~V~V~~ 190 (1023)
T 1jz7_A 180 GENRLAVMVLR 190 (1023)
T ss_dssp EEEEEEEEEES
T ss_pred CCcEEEEEEEe
Confidence 99999999864
No 70
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=45.56 E-value=71 Score=29.93 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=41.4
Q ss_pred CeEEEEEEEEecCCC-ccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECc
Q 011661 181 RGCVSGRLLVQDSND-VISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPG 252 (480)
Q Consensus 181 RGtVsG~v~~~d~~~-~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G 252 (480)
-++++|+|. -.|.. .....++-|-|.+.| |.. .+.|.+. ...+|.|+ ..+=.|+|+|..-..|
T Consensus 7 ~a~l~G~iv-~tgE~i~~~~~gv~i~l~e~g----~~~--~~~~~~~-v~qDGtf~-~~lF~G~Yki~~~~nG 70 (202)
T 4fxt_A 7 KATLTGKAI-YDGEAVGVRSGSSEFALFQDG----YAL--KGSIPVY-IAQDGSYS-VSLFNGDYKLVRMGNA 70 (202)
T ss_dssp EEEEEEEEE-ETTEECBCCTTTEEEEEECCC----------CCEEEE-BCTTSEEE-EEEESEEEEEEEEETC
T ss_pred CceEEEEEE-ECCCEeeecCCceEEEEEEcc----cCC--CCCeeEE-EcCCCcEE-EEEEcceeEEEECCCC
Confidence 478999998 33321 122456888887653 432 2445543 78899999 8999999999954445
No 71
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=44.35 E-value=20 Score=36.04 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=40.0
Q ss_pred EEEEEEEec--CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEE
Q 011661 184 VSGRLLVQD--SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAW 249 (480)
Q Consensus 184 VsG~v~~~d--~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~ 249 (480)
..|.|.+.. .....+..+|...|... +|..-.. .+...-..+|++|.|.|.++++|+|.|.=-
T Consensus 249 ~tg~i~i~K~d~~~~~~L~GA~F~l~~~--~g~~~~~-~~~~~~~~td~~G~~~~~~L~~G~Y~l~E~ 313 (355)
T 3kpt_A 249 TTGIIELTKIDSANKNKMKGAEFVLKDN--NGKIVVV-AGKEVTGVSDENGVIKWSNIPYGDYQIFET 313 (355)
T ss_dssp CEEEEEEEEEETTTCCBCSCCEEEEEET--TSCBCBS-SSSBCEEECCTTSEEEEEEEESSEEEEEEE
T ss_pred cccceEEEEEeCCCCcccCCCEEEEEeC--CCCEEEe-ccceEEEEECCCCeEEECcCCCceEEEEEE
Confidence 356554443 32346888899888632 1222111 111223458999999999999999999866
No 72
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Probab=43.34 E-value=8.7 Score=44.42 Aligned_cols=68 Identities=21% Similarity=0.153 Sum_probs=44.3
Q ss_pred cEEEEEEeCCCC-CCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeee
Q 011661 370 TWQIKFKLDHVD-RNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 448 (480)
Q Consensus 370 ~w~I~F~L~~~~-~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 448 (480)
-.+=.|++++.. ......|++..+ .....|.|||+.++ .-.|-+.-++|+|.. .|+.
T Consensus 115 ~Yrr~f~vp~~~~~~~~v~L~F~gv---~~~a~V~vNG~~vG------------------~~~gg~~p~~~DIT~-~lk~ 172 (1032)
T 3oba_A 115 VYARTFELDSKSIESFEHRLRFEGV---DNCYELYVNGQYVG------------------FNKGSRNGAEFDIQK-YVSE 172 (1032)
T ss_dssp EEEEEEEECHHHHHHEEEEEEESCE---ESEEEEEETTEEEE------------------EEECTTSCEEEECTT-TCCS
T ss_pred EEEEEEEECchhcCCCEEEEEECCc---ceeEEEEECCEEEE------------------EEeCCcccEEEEChh-hccC
Confidence 345678886532 222344444332 35678999998552 112445678999986 6789
Q ss_pred eecEEEEEeec
Q 011661 449 GENTIFLKQPR 459 (480)
Q Consensus 449 G~NtI~l~~~~ 459 (480)
|+|+|.+.+.+
T Consensus 173 G~N~L~V~V~~ 183 (1032)
T 3oba_A 173 GENLVVVKVFK 183 (1032)
T ss_dssp EEEEEEEEEES
T ss_pred CcEEEEEEEEC
Confidence 99999999865
No 73
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=41.65 E-value=30 Score=29.67 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=29.8
Q ss_pred CCeEEEEEEEEecCCCccccC--ceEEEecCCCCCCCccccccccceEEEeCCCcceEeC
Q 011661 180 ERGCVSGRLLVQDSNDVISAN--GAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK 237 (480)
Q Consensus 180 ~RGtVsG~v~~~d~~~~~pa~--~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~ 237 (480)
|--.|+|+|.=.. +||. ++.|-|.+.... -.+....---+.||++|+|+|.
T Consensus 3 qsV~V~G~L~C~~----~Pa~~~~V~V~L~d~~~~---~~d~Ddll~~~~Td~~G~F~l~ 55 (117)
T 3uaf_A 3 SCLMATGVLKCPT----DPEAVKKVHIDLWDAAAA---AAESDDLMGRTWSDRNGNFQVT 55 (117)
T ss_dssp EEEEEEEEEECTT----CGGGGSSCEEEEEEHHHH---HTTSCCEEEEEECCTTSEEEEE
T ss_pred EEEEEEEEEEeCC----ccCCCCCEEEEEEecccc---cCCchHhheeeEECCCCEEEEE
Confidence 3457999998643 5654 788888530000 0001111223678999999986
No 74
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.54 E-value=15 Score=40.14 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeee
Q 011661 369 TTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 448 (480)
Q Consensus 369 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 448 (480)
+=.+-.|+++.. +. .+|-...-+.=+|.|||..++. - +.++- ..++| ||+++|++
T Consensus 509 ~~yk~~f~~~~~---~D----t~Ld~~g~gKG~vwVNG~nlGR-Y---W~~GP-----------qqtlY---vP~~~Lk~ 563 (612)
T 3d3a_A 509 AYYRSTFNLNEL---GD----TFLNMMNWSKGMVWVNGHAIGR-Y---WEIGP-----------QQTLY---VPGCWLKK 563 (612)
T ss_dssp EEEEEEEEESSC---CB----EEEECTTCCEEEEEETTEEEEE-E---ETTCS-----------CCEEE---ECGGGCCS
T ss_pred EEEEEEEECCCC---Cc----EEEecCCCCcEEEEECCEeEEe-E---EecCC-----------EEEEE---ecHHHcCC
Confidence 345667887542 22 2344455678899999998862 2 22210 22444 99999999
Q ss_pred eecEEEEEeecC
Q 011661 449 GENTIFLKQPRC 460 (480)
Q Consensus 449 G~NtI~l~~~~g 460 (480)
|.|+|.|=-..+
T Consensus 564 g~N~ivvfE~~~ 575 (612)
T 3d3a_A 564 GENEIIILDMAG 575 (612)
T ss_dssp EEEEEEEEESSC
T ss_pred CCcEEEEEEEcC
Confidence 999887654444
No 75
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=39.51 E-value=58 Score=26.81 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=24.7
Q ss_pred ceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeEEEEe
Q 011661 223 QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTIT 266 (480)
Q Consensus 223 qYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 266 (480)
..++.+..-=.|+.... +|+|+|+|-+-.-.|.-.....|+|+
T Consensus 43 ~vg~dt~apy~~~w~~~-~G~htl~a~AtD~~G~~~tS~~v~vt 85 (98)
T 3pe9_A 43 VIGSDREAPYEYEWKAV-EGNHEISVIAYDDDDAASTPDSVKIF 85 (98)
T ss_dssp EEEEECSSSEEEEEECC-SEEEEEEEEEEETTCCBCCCEEEEEE
T ss_pred EecccccCCEEEEEEcC-CccEEEEEEEEECCCCEEeeeEEEEE
Confidence 44444433345666767 89999999864334433333344444
No 76
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=38.98 E-value=31 Score=37.39 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred EEEeCCCcceEeCcccCcceEEEEEE
Q 011661 225 WTTADEDGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 225 wt~td~~G~FtI~nVrpGtY~L~a~~ 250 (480)
|..+.....-+..|++||+|+|.|-+
T Consensus 731 W~~~~~~~~~~ytnL~pG~Y~f~V~a 756 (781)
T 3v9f_A 731 WYTINEQNSVTFRNIPPGKYEFLVKA 756 (781)
T ss_dssp EEEESSCSEEEECSCCSEEEEEEEEE
T ss_pred ccCcCCcceEEEcCCCCceEEEEEEE
Confidence 88888788899999999999999975
No 77
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=38.85 E-value=10 Score=41.20 Aligned_cols=42 Identities=31% Similarity=0.509 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEE
Q 011661 396 TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFL 455 (480)
Q Consensus 396 ~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l 455 (480)
.-+.=.|.|||..++. -+. +|- ..++| ||+.+|++|.|+|.+
T Consensus 527 gwgKG~v~VNG~nLGR-YW~---~GP-----------Q~tLY---vP~~~Lk~G~NeIvv 568 (595)
T 4e8d_A 527 EFGKGVAFVNGQNLGR-FWN---VGP-----------TLSLY---IPHSYLKEGANRIII 568 (595)
T ss_dssp TCCEEEEEETTEEEEE-EET---TCS-----------BCEEE---ECGGGSCSEEEEEEE
T ss_pred CCceEEEEECCeeeec-ccC---CCC-----------eEEEE---ecHHHhCcCCceEEE
Confidence 3466789999987752 221 111 12444 999999999997654
No 78
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for S genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=37.95 E-value=84 Score=29.76 Aligned_cols=60 Identities=18% Similarity=0.358 Sum_probs=41.1
Q ss_pred CeEEEEEEEEecCCC--ccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEE
Q 011661 181 RGCVSGRLLVQDSND--VISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAW 249 (480)
Q Consensus 181 RGtVsG~v~~~d~~~--~~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~ 249 (480)
-++++|+|. -.|.. .....++-|-|.+.+ |... +.|.+ ....+|.|+ ..+=.|+|+|..-
T Consensus 10 ~a~l~G~iv-~tGE~i~~~~~~gv~i~l~E~g----y~~~--~~~~~-~v~qDGtf~-~~lF~G~Yki~~~ 71 (215)
T 3hn5_A 10 ESMLTGRVM-YNGEALQLRGNEAVQLQLYQHG----YAKH--DPINV-YVNQDGMYS-ANLFDGEYQMITK 71 (215)
T ss_dssp CEEEEEEEE-ETTEECCCCCTTSCEEEEESSC----GGGC--CCEEE-EBCTTSEEE-EEECSEEEEEEEC
T ss_pred CceEEEEEE-ECCCEeeecCCCceEEEEEEcc----cCCC--CCeeE-EEcCCCcEE-EEEECceeEEEEe
Confidence 478999998 33321 122344888887653 5432 44555 378899999 7899999999984
No 79
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=34.85 E-value=28 Score=37.80 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEeCCCcceEeCcccCcceEEEEEE
Q 011661 225 WTTADEDGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 225 wt~td~~G~FtI~nVrpGtY~L~a~~ 250 (480)
|..+.....-+..|++||+|+|.|-+
T Consensus 737 W~~~~~~~~~~ytnL~pG~Y~f~V~a 762 (795)
T 4a2l_A 737 WYYLTDSRTVSYSNLPQGTYQFLVKA 762 (795)
T ss_dssp CEEESSCCEEEEECCCSEEEEEEEEE
T ss_pred ccCCCCcCeEEecccCCCeEEEEEEE
Confidence 77777777899999999999999976
No 80
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Probab=33.47 E-value=18 Score=38.88 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=42.4
Q ss_pred EEEEEEeCCC---CCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCee
Q 011661 371 WQIKFKLDHV---DRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFI 447 (480)
Q Consensus 371 w~I~F~L~~~---~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~ 447 (480)
.+-.|.+++. .......|++. +....-.|.|||+.++ .-.|-+.-++++|+ ..|+
T Consensus 81 Yr~~f~~p~~~~~~~~~~~~L~f~---gv~~~a~V~vNG~~vg------------------~~~~g~~~~~~dit-~~l~ 138 (613)
T 3hn3_A 81 YEREVILPERWTQDLRTRVVLRIG---SAHSYAIVWVNGVDTL------------------EHEGGYLPFEADIS-NLVQ 138 (613)
T ss_dssp EEEEECCCHHHHHCTTEEEEEEES---CCCSEEEEEETTEEEE------------------EEESSSSCEEEECH-HHHC
T ss_pred EEEEEEeCchhhhcCCCEEEEEEC---CcceEEEEEECCEEEe------------------EEcCCcceEEEECh-hhhc
Confidence 4556888654 11223445543 2346778999998552 01244567899997 6888
Q ss_pred eee----cEEEEEee
Q 011661 448 EGE----NTIFLKQP 458 (480)
Q Consensus 448 ~G~----NtI~l~~~ 458 (480)
.|. |+|.+.+.
T Consensus 139 ~g~~~~~n~l~V~v~ 153 (613)
T 3hn3_A 139 VGPLPSRLRITIAIN 153 (613)
T ss_dssp CC---CCEEEEEEEE
T ss_pred CCCCCcceEEEEEEe
Confidence 885 99999885
No 81
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=33.05 E-value=34 Score=36.89 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.1
Q ss_pred EEEeCC-CcceEeCcccCcceEEEEEE
Q 011661 225 WTTADE-DGCFSIKNIRTGNYNLYAWV 250 (480)
Q Consensus 225 wt~td~-~G~FtI~nVrpGtY~L~a~~ 250 (480)
|..++. ...-++.|++||+|+|.|-+
T Consensus 702 W~~~~~~~~~~~ytnL~pG~Y~f~V~a 728 (758)
T 3ott_A 702 WNFLKSNINRITYSNLSYGNYQLIISK 728 (758)
T ss_dssp CEECCTTCCEEEECSCCSEEEEEEEEE
T ss_pred ccCCCCCcceEEecCCCCccEEEEEEE
Confidence 666653 45689999999999999986
No 82
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=31.74 E-value=2.5e+02 Score=27.08 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=42.3
Q ss_pred CeEEEEEEEEec-CCCc---cccCceEEEecCCCCCCCccccccccc-eEEEeCCCcceEeCcccCcceEEEEE
Q 011661 181 RGCVSGRLLVQD-SNDV---ISANGAYVGLAPPGDVGSWQTECKDYQ-FWTTADEDGCFSIKNIRTGNYNLYAW 249 (480)
Q Consensus 181 RGtVsG~v~~~d-~~~~---~pa~~a~V~L~~~~~~g~~q~~~~~yq-Ywt~td~~G~FtI~nVrpGtY~L~a~ 249 (480)
-++++|+|.-.. |... ....++.|-|.+. +|.. +.+.| .+ ....+|.|+=..+=.|+|+|..-
T Consensus 9 ~s~l~G~ivd~~tGE~i~~~~g~~gv~i~l~E~----g~~~-~~~~~~~~-~v~~DGtf~Nt~lF~G~Yki~~~ 76 (249)
T 4eiu_A 9 SETIWGEVVDEATGKRVLTDQGSEGIRVRLTEL----SWGD-NVQHNPDF-YCMMDGTFQNTKIFKGEYNVRID 76 (249)
T ss_dssp CEEEEEEEEETTTCCBCCCCSSTTSCEEEEEEC----CSSC-CBCCSCCE-ECCTTSEEEEEEECSEEEEEEEE
T ss_pred cceeEEEEEECCCCCEeeeccCCCceEEEEEec----cccc-CCCccCCE-EECCCCceeeeeEEcceeEEEeC
Confidence 479999998753 2211 1223588888664 2543 23444 44 47889999977799999999985
No 83
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae}
Probab=31.41 E-value=76 Score=30.44 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=37.2
Q ss_pred CeEEEEEEEEecCCCccccCceE--EEecCCCCCCCccccccccceEEEeCCCcceEeCcc-cCcceEEEEE-ECcee
Q 011661 181 RGCVSGRLLVQDSNDVISANGAY--VGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNI-RTGNYNLYAW-VPGFV 254 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~~pa~~a~--V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nV-rpGtY~L~a~-~~G~~ 254 (480)
.|.|.-+=.-.++....+..+|. .-|+..... .| ....+.++++|.|+|..+ ++|+|.|.=- +.|+.
T Consensus 156 ~~~~~~~K~d~~~~~~~~L~GA~~~F~l~~~~~~-~~------~~~~~~t~~~g~~~~~gLd~~g~Y~l~Et~a~GY~ 226 (262)
T 2x9z_A 156 NGDLTLTKTWVDATGAPIPAGAEATFDLVNAQAG-KV------VQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYS 226 (262)
T ss_dssp TSCEEEEEEEECTTSCBCCCCSCEEEEEEETTTC-CE------EEEEEECTTCSEEEECSCCTTSCEEEEECCBTTBE
T ss_pred cccEEEEEEcCCCCcccCcCCcEEEEEEEECCCC-cE------EEEEEecCCceEEEEeCCCCCCCEEEEEEEeCCcc
Confidence 35555332222332223566644 777643211 11 122333799999999999 7999998742 24543
No 84
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=29.28 E-value=50 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=15.1
Q ss_pred ccCcceEEEEEECceeeeeeeeeEEEEe
Q 011661 239 IRTGNYNLYAWVPGFVGDYRSDALVTIT 266 (480)
Q Consensus 239 VrpGtY~L~a~~~G~~G~~~~~~~VtV~ 266 (480)
-+||+|++.+-+..-.+.-.....|+|+
T Consensus 52 ~~~G~YtV~Ltv~~g~~~~~a~~~V~V~ 79 (80)
T 1b4r_A 52 VLPGRYHVTAVLALGAGSALLGTDVQVE 79 (80)
T ss_dssp CSSEEEEEEEEEECSSCEEEEEEEEEEB
T ss_pred CCCcEEEEEEEEEeCCceEEEEEEEEEE
Confidence 3789998877653111222334456655
No 85
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=28.47 E-value=20 Score=37.33 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=29.7
Q ss_pred EEeCCCcceEeCcccCcceEEEEEE--CceeeeeeeeeEEEEeCCce
Q 011661 226 TTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRSDALVTITSGSN 270 (480)
Q Consensus 226 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t 270 (480)
-.+|++|.|.|.++++|+|.|.=-. .|+.- ....-.++|++++.
T Consensus 372 ~~td~~G~~~~~~L~~G~Y~l~EtkAP~GY~l-~~~~~~f~i~~~~~ 417 (444)
T 2x9x_A 372 LVSDAQGRFEITGLLAGTYYLEETKQPAGYAL-LTSRQKFEVTATSY 417 (444)
T ss_dssp EECCTTCEEEEEEECSEEEEEEEEECCTTSCC-CCSCEEEEECTTTT
T ss_pred EEECCCCeEEECCCCCceEEEEEeeCCCCccc-CCCcEEEEEeCCcc
Confidence 4679999999999999999998653 23220 01123466776654
No 86
>2xtl_A Cell WALL surface anchor family protein; GRAM-positive PILI protein, BP-2A 515 allele, immunoglobulin domains, structural protein; 1.75A {Streptococcus agalactiae}
Probab=28.05 E-value=21 Score=37.42 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=29.9
Q ss_pred EEeCCCcceEeCcccCcceEEEEEE--CceeeeeeeeeEEEEeCCce
Q 011661 226 TTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRSDALVTITSGSN 270 (480)
Q Consensus 226 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t 270 (480)
-.+|++|.|.|.++.+|+|.|.=-. .|+.= ......++|.+++.
T Consensus 378 ~ttd~~G~~~~~~L~~G~Y~l~EtkAP~GY~l-~~~~~~f~i~~~~~ 423 (452)
T 2xtl_A 378 LISNDKGQFEITGLTEGQYSLEETQAPTGYAK-LSGDVSFNVNATSY 423 (452)
T ss_dssp EECCTTSEEEEEEECSEEEEEEEEECCTTBCC-CSSCEEEEECTTTT
T ss_pred EEeCCCCeEEECCCCCceEEEEEeeCCCCccc-CCCCEEEEEeCCcc
Confidence 3589999999999999999998653 23220 01123467776654
No 87
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.95 E-value=70 Score=35.13 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeee
Q 011661 371 WQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGE 450 (480)
Q Consensus 371 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 450 (480)
.+=.|+|++. ++|.|. +-+..++.|||+.++. ++.- + +|++|+
T Consensus 61 ~rk~f~~~~~-----a~l~i~----a~G~ye~~iNG~~vg~--------------y~~r------~--------~L~~G~ 103 (739)
T 3cih_A 61 FSKVLNLSEP-----EEVFIA----AEGTYNVKLDGKLQFG--------------MPET------L--------LLPAGK 103 (739)
T ss_dssp EEEEEEESSC-----EEEEEE----EESEEEEEETTEECSS--------------CCSE------E--------EECSEE
T ss_pred EEEEEEcCCC-----cEEEEE----EcCcEEEEECCEEccC--------------CCCc------e--------EecCCc
Confidence 3445888541 566665 5689999999997741 1111 1 388999
Q ss_pred cEEEEEeecCC
Q 011661 451 NTIFLKQPRCT 461 (480)
Q Consensus 451 NtI~l~~~~gs 461 (480)
|+|-+.+-.|.
T Consensus 104 N~i~v~lg~g~ 114 (739)
T 3cih_A 104 HSLNIKVWNQA 114 (739)
T ss_dssp EEEEEEEECSS
T ss_pred eEEEEEEEeCC
Confidence 99999987764
No 88
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=27.37 E-value=59 Score=33.83 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=38.3
Q ss_pred CeEEEEEEEEecCCCc--cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcc-cCcceEEEEE
Q 011661 181 RGCVSGRLLVQDSNDV--ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNI-RTGNYNLYAW 249 (480)
Q Consensus 181 RGtVsG~v~~~d~~~~--~pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nV-rpGtY~L~a~ 249 (480)
.|+|+=+=...|+... ..+.+|...|..... | ...+.-..+|++|.++|.++ ++|+|+|.=-
T Consensus 159 ~G~i~i~K~d~~g~~l~~~~g~~A~F~L~~~~~-~------~~v~~~~ttd~~G~~~~~~L~~~G~Y~v~Et 223 (444)
T 2x9x_A 159 NGDLTLTKTWVDATGAPIPAGAEATFDLVNAQA-G------KVVQTVTLTTDKNTVTVNGLDKNTEYKFVER 223 (444)
T ss_dssp TSCEEEEEEEECTTSCBCCCCSCEEEEEEETTT-C------CEEEEEEECTTCCEEEECSCCTTSCEEEEEC
T ss_pred cceEEEEEecCCCCCcccccCCceEEEEEECCC-C------cEEEEEEEeCCCceEEEcCCCCCCcEEEEEE
Confidence 4666655444454211 123457777764321 1 11223456899999999999 9999999853
No 89
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A*
Probab=25.23 E-value=42 Score=29.62 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=30.4
Q ss_pred EEEEEEecCCCccccCceEEEecCCCCCCCccccccccce----EEEeC-CC---cceEeCcccCcceE
Q 011661 185 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQF----WTTAD-ED---GCFSIKNIRTGNYN 245 (480)
Q Consensus 185 sG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~q~~~~~yqY----wt~td-~~---G~FtI~nVrpGtY~ 245 (480)
+|+++...+ -..+.++.|.. |.......|. |+-++ .+ |.|+|.|+ |+|-
T Consensus 15 sgk~lDv~~--~sta~Gt~V~~--------w~~~g~~nQ~~~~~W~~~~~~~~~~g~y~i~n~--G~~L 71 (148)
T 3nbc_A 15 TNRLIDLTG--SNPAENTLIIG--------HHLNKTPSGYGNQQWTLVQLPHTTIYTMQAVNP--QSYV 71 (148)
T ss_dssp TTCEEEEGG--GCCSTTEEEEE--------ECCCSTTTCCGGGCEEEEECTTSSEEEEEESSS--CCEE
T ss_pred CCCeEECCC--CcCCCCcEEEE--------eCCCCChhheeecEEEEEECCCcccceEEEEEC--CcEE
Confidence 455544332 13456777776 3333445566 98776 45 99999999 8754
No 90
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=24.71 E-value=70 Score=26.92 Aligned_cols=15 Identities=13% Similarity=0.483 Sum_probs=13.5
Q ss_pred cccCcceEEEEEECc
Q 011661 238 NIRTGNYNLYAWVPG 252 (480)
Q Consensus 238 nVrpGtY~L~a~~~G 252 (480)
.+.||+|.+.+|++|
T Consensus 27 ~~~PG~Y~vdI~vN~ 41 (125)
T 3bwu_D 27 ELPPGTYRVDIYLNN 41 (125)
T ss_dssp SSCSEEEEEEEEETT
T ss_pred CcCCcEEEEEEEECC
Confidence 478999999999987
No 91
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=24.36 E-value=83 Score=36.15 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=42.4
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeee-
Q 011661 370 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE- 448 (480)
Q Consensus 370 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~- 448 (480)
-++=.|+++.. ..+|.|-+-+.......|.|||+-++ .-..+.+ -...-+.|+| ..|+.
T Consensus 692 wYR~~F~~~~~----~~~L~~~~~gG~~~~~~VwvNG~~lG-------s~~g~~~-------~~~~~~~~~l--~~L~~g 751 (971)
T 1tg7_A 692 LFRGHFTANGK----EKTFFVQTKGGTAYGHSIWINETYVG-------SWAGTSI-------NDNNNATYTL--PTLQSG 751 (971)
T ss_dssp EEEEEEECCSC----CCEEEEEEECSTTCCEEEEETTEEEE-------EECCCTT-------CSEEEEEEEC--CCCCTT
T ss_pred EEEEEEECCCc----ceEEEEEecCcccceEEEEECCEEEe-------eeecCCC-------cccCceEEEE--eEecCC
Confidence 45566766543 23677777777778899999998553 1111110 0012456666 57787
Q ss_pred eecEEEEEee
Q 011661 449 GENTIFLKQP 458 (480)
Q Consensus 449 G~NtI~l~~~ 458 (480)
|.|+|++-+.
T Consensus 752 g~NvI~Vlvd 761 (971)
T 1tg7_A 752 KNYVITVVID 761 (971)
T ss_dssp CEEEEEEEEC
T ss_pred CceEEEEEEe
Confidence 6899999775
No 92
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=24.21 E-value=1.5e+02 Score=25.34 Aligned_cols=56 Identities=9% Similarity=0.184 Sum_probs=37.2
Q ss_pred CcceEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcCCCCC-CCeEEEeccCCCcccc
Q 011661 241 TGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDG-PTLWEIGIPDRSAREF 300 (480)
Q Consensus 241 pGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~~~~~-~~LweIG~~Drta~eF 300 (480)
.+.|++.+|.+|-. .....|.+.+|++.++ .+.|.+...| -+|.-+..++..-.|.
T Consensus 49 a~~~~V~lyvng~~---v~t~~v~La~G~s~tv-~f~~~~~~~G~~~v~AvVD~~n~I~E~ 105 (127)
T 3idu_A 49 VPSTKVRVYINGTL---YKNWTVSLGPKEEKVL-TFNWTPTQEGMYRINATVDEENTVVEL 105 (127)
T ss_dssp EEEEEEEEEETTEE---EEEEEEEECTTCEEEE-EEEECCSSCEEEEEEEEESTTCCSCCS
T ss_pred cCCcEEEEEECCEE---EeeEEeccCCCCeEEE-EEEEEcCCCcEEEEEEEEcCCCcEeec
Confidence 45688999988743 3344688999999888 5888754333 2466666666554444
No 93
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=23.91 E-value=44 Score=28.74 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.4
Q ss_pred cccCcceEEEEEECc
Q 011661 238 NIRTGNYNLYAWVPG 252 (480)
Q Consensus 238 nVrpGtY~L~a~~~G 252 (480)
.++||+|+|.|+..|
T Consensus 89 ~~~pG~Ytl~a~l~~ 103 (120)
T 3isy_A 89 VPEPGTYEVKVTFKG 103 (120)
T ss_dssp CCCSEEEEEEEEECC
T ss_pred CCCCccEEEEEEEEe
Confidence 689999999999765
No 94
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii}
Probab=23.76 E-value=59 Score=31.82 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=45.1
Q ss_pred EEEEEEEEec--CCC----ccccCceEEEecCCCCC--CCcccccc-------ccceEEEeCCCcceEeCcc--------
Q 011661 183 CVSGRLLVQD--SND----VISANGAYVGLAPPGDV--GSWQTECK-------DYQFWTTADEDGCFSIKNI-------- 239 (480)
Q Consensus 183 tVsG~v~~~d--~~~----~~pa~~a~V~L~~~~~~--g~~q~~~~-------~yqYwt~td~~G~FtI~nV-------- 239 (480)
+-.|.|.+.. ... ..+..+|..-|+...+. +.|..+.+ +..-+ .||++|.|+|.++
T Consensus 156 ~~~g~i~i~KvD~~~~~~~~~~L~GA~F~L~~~~~~~~~~~~~~~~g~~i~~~~~~~~-tTd~~G~~~~~gL~~~d~~~~ 234 (290)
T 3qdh_A 156 SRWGDLLIKKVDNHQQGQDKAGLQGAQFQLYKAKNAYAGTCTKDKEGDPIAINGETTL-TTDAQGAINVKGLFISDSIDG 234 (290)
T ss_dssp EEEEEEEEEEC----------CCTTCEEEEEEESSTTCSSCCSCEESSCCCBTTBSSE-ECCTTSEEEEEEEEEEESCCC
T ss_pred EEEeeEEEEEECCCCCcccCcccCCCEEEEEECCCcccceeeccccCceEecCCceEE-EECCCCEEEEeCccccccccc
Confidence 3458766554 323 36788888888642210 11111100 11122 4899999999999
Q ss_pred ---------cCcceEEEEEE--Cceeeeeee-----eeEEEEeCCceeee
Q 011661 240 ---------RTGNYNLYAWV--PGFVGDYRS-----DALVTITSGSNIKM 273 (480)
Q Consensus 240 ---------rpGtY~L~a~~--~G~~G~~~~-----~~~VtV~aG~t~~l 273 (480)
.+|+|.|.=-. .|+. +. ...|+|++|++...
T Consensus 235 ~~~~~~~~~~~~~Y~l~EtkAP~GY~---l~~~~~~~~~~~v~~~~~~~~ 281 (290)
T 3qdh_A 235 ANRDNQKDATARCYVLVETKAPAGYV---LPAGDGAVTPVKIEVGAVTTD 281 (290)
T ss_dssp TTSSCCTTCSEEEEEEEEEECCTTBC---CCCGGGGEEEEEEEC------
T ss_pred ccccccccCCCceEEEEEccCCCCeE---cCcCcCCceeEEEECCCCccE
Confidence 57999987653 2322 22 34799999876543
No 95
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=22.84 E-value=47 Score=28.79 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.2
Q ss_pred eEeCcccCcceEEEEEECc
Q 011661 234 FSIKNIRTGNYNLYAWVPG 252 (480)
Q Consensus 234 FtI~nVrpGtY~L~a~~~G 252 (480)
|+-.++.||+|++-+|++|
T Consensus 22 F~~g~~~PG~Y~vdI~vN~ 40 (136)
T 4b0m_A 22 FNQGLQLPGNYFVNVFVNG 40 (136)
T ss_dssp HHTTCCCCEEEEEEEEETT
T ss_pred hcCCCCCCcEEEEEEEECC
Confidence 4434577999999999987
No 96
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=22.52 E-value=51 Score=26.10 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCcceEeCcccCcc-eEEEEEECce--eeeeeeeeEEEEe
Q 011661 230 EDGCFSIKNIRTGN-YNLYAWVPGF--VGDYRSDALVTIT 266 (480)
Q Consensus 230 ~~G~FtI~nVrpGt-Y~L~a~~~G~--~G~~~~~~~VtV~ 266 (480)
..-.++|.+++||+ |.+.+.+.-- .|.-. ...|+|+
T Consensus 62 ~~ts~~l~~L~p~t~Y~~~V~A~~~~~~G~~~-S~p~~~~ 100 (103)
T 3t04_D 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP-NSPISIN 100 (103)
T ss_dssp TCCEEEECSCCTTCCEEEEEEEESCCCTTCCC-SCCEEEE
T ss_pred CcCEEEeCCCCCCCEEEEEEEEEeCCCCCCCC-CCCEEEe
Confidence 45679999999999 9999987422 34323 2346655
No 97
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=20.07 E-value=36 Score=36.88 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=29.3
Q ss_pred EEeCCCcceEeCcccCcceEEEEEE--CceeeeeeeeeEEEEeCCc
Q 011661 226 TTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRSDALVTITSGS 269 (480)
Q Consensus 226 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~ 269 (480)
-.+|++|.|.|.++++|+|.|.=-. .|+.- ....-.++|+++.
T Consensus 527 ~~t~~~G~~~~~~L~~G~Y~l~EtkAP~GY~l-~~~~~~f~i~~~~ 571 (605)
T 2y1v_A 527 LVSDAQGRFEITGLLAGTYYLEETKQPAGYAL-LTSRQKFEVTATS 571 (605)
T ss_dssp EECCTTCEEEEEEECSEEEEEEEEECCTTSCC-CSSCEEEEECTTT
T ss_pred EeeCCCCEEEECCCCCceEEEEEeeCCCCccc-CCCcEEEEEcCCc
Confidence 3679999999999999999998664 33220 0112346677664
Done!