BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011662
         (480 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 58/75 (77%)

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
           LCQV+ C  D+  AK YHR+H+VCE H+K+  V + GL +RFCQQCSRFH L EFDE KR
Sbjct: 10  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69

Query: 245 SCRRRLSDHNARRRK 259
           SCRRRL+ HN RRRK
Sbjct: 70  SCRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240
           A  CQV+ CG DLS  KDYHR+H+VCE HSK+   +VGG+ +RFCQQCSRFH L EFD
Sbjct: 3   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
           A CQV  C  D+S  K YH++HRVC   + +  V++ G  +R+CQQC +FH L +FDE K
Sbjct: 4   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 63

Query: 244 RSCRRRLSDHNARRRK 259
           RSCRR+L  HN RR++
Sbjct: 64  RSCRRKLERHNNRRKR 79


>pdb|3NNR|A Chain A, Crystal Structure Of A Tetr-Family Transcriptional
           Regulator (Maqu_3571) From Marinobacter Aquaeolei Vt8 At
           2.49 A Resolution
          Length = 228

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 382 QDCHSALSL---LSKTSWGICEPKKVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQ 438
           +D  SA SL   L  T+W        + + P S SLT +   +   +    P+ + EYR+
Sbjct: 145 EDLRSAXSLNVWLVITNWXAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLTPEYRE 204


>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
          Length = 555

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 102 DVLEDF-DLKKEFAKAEPTG 120
           D+L DF +LKKEFAKA+P G
Sbjct: 328 DILPDFKNLKKEFAKADPKG 347


>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaripentaose
 pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaritriose And Laminaritetraose
          Length = 555

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 102 DVLEDF-DLKKEFAKAEPTG 120
           D+L DF +LKKEFAKA+P G
Sbjct: 328 DILPDFKNLKKEFAKADPKG 347


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,056,136
Number of Sequences: 62578
Number of extensions: 492405
Number of successful extensions: 748
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 7
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)