BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011663
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 315 MERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGRI 374
ME L G LTD+ S L ++ A+ L A H D+ + ++ L DGR+
Sbjct: 121 MEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRV 180
Query: 375 GFLDFGIVGRIS---PKT--------WAAMDLFLASIATEEYE--SMASALIEM 415
DFG +IS PK W A ++ S+ E + S+ +IEM
Sbjct: 181 KLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEM 234
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 253 LSRTSMVGIVKD----IRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCS 308
L+R + G+V + I ++L D K + N+ + E +G + P + HC
Sbjct: 75 LTRPATGGVVSEGIGAIENALL---DAKAKTLNVPCY----ELLGGKLRDRVPVYWSHCP 127
Query: 309 TRRVLTMERLYGVPLTDLDSIS 330
T R+ + +G P+TDLD +
Sbjct: 128 TWRI-NHPKFFGPPVTDLDGVK 148
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 253 LSRTSMVGIVKD----IRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCS 308
L+R + G+V + I ++L D K + N+ + E +G + P + HC
Sbjct: 75 LTRPATGGVVSEGIGAIENALL---DAKAKTLNVPCY----ELLGGKLRDRVPVYWSHCP 127
Query: 309 TRRVLTMERLYGVPLTDLDSIS 330
T R+ + +G P+TDLD +
Sbjct: 128 TWRI-NHPKFFGPPVTDLDGVK 148
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 225 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 284
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 285 RVKLSDFGFCAQVS 298
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 103 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 162
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 163 RVKLSDFGFCAQVS 176
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 303 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 362
V ++C V + RL LT+ D I++++ S L L H D+
Sbjct: 102 VMEYCGAGSVSDIIRLRNKTLTE-DEIATILQSTLKGL--------EYLHFMRKIHRDIK 152
Query: 363 AGNLWLLRDGRIGFLDFGIVGRIS 386
AGN+ L +G DFG+ G+++
Sbjct: 153 AGNILLNTEGHAKLADFGVAGQLT 176
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 105 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 164
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 165 RVKLSDFGFCAQVS 178
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 148 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 207
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 208 RVKLSDFGFCAQVS 221
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 94 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 153
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 154 RVKLSDFGFCAQVS 167
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ A+ L A H D+ + ++ L DG
Sbjct: 98 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 157
Query: 373 RIGFLDFGIVGRIS 386
R+ DFG ++S
Sbjct: 158 RVKLSDFGFCAQVS 171
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 313 LTMERLYGVPLTDLDSISSL----VSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
+ ME L G LTD+ + + + +++ + AL L + + H D+ + N+ L
Sbjct: 95 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEF----LHSNQVIHRDIKSDNILL 150
Query: 369 LRDGRIGFLDFGIVGRISPK 388
DG + DFG +I+P+
Sbjct: 151 GMDGSVKLTDFGFCAQITPE 170
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 313 LTMERLYGVPLTDLDSISSL----VSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
+ ME L G LTD+ + + + +++ + AL L + + H D+ + N+ L
Sbjct: 94 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEF----LHSNQVIHRDIKSDNILL 149
Query: 369 LRDGRIGFLDFGIVGRISPK 388
DG + DFG +I+P+
Sbjct: 150 GMDGSVKLTDFGFCAQITPE 169
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 313 LTMERLYGVPLTDLDSISSL----VSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
+ ME L G LTD+ + + + +++ + AL L + + H D+ + N+ L
Sbjct: 94 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEF----LHSNQVIHRDIKSDNILL 149
Query: 369 LRDGRIGFLDFGIVGRISPK 388
DG + DFG +I+P+
Sbjct: 150 GMDGSVKLTDFGFCAQITPE 169
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 313 LTMERLYGVPLTDLDSISSL----VSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
+ ME L G LTD+ + + + +++ + AL L + + H D+ + N+ L
Sbjct: 94 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEF----LHSNQVIHRDIKSDNILL 149
Query: 369 LRDGRIGFLDFGIVGRISPK 388
DG + DFG +I+P+
Sbjct: 150 GMDGSVKLTDFGFCAQITPE 169
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 357 FHADVHAGNLWLLRDGRIGFLDFGI 381
H DV AGN+ L DG + DFG+
Sbjct: 143 IHRDVKAGNILLGEDGSVQIADFGV 167
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 309 TRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
T+ + ME L G DL L + +++ + L + + H D+ A N+ L
Sbjct: 93 TKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLL 152
Query: 369 LRDGRIGFLDFGIVGRIS 386
G + DFG+ G+++
Sbjct: 153 SEHGEVKLADFGVAGQLT 170
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 357 FHADVHAGNLWLLRDGRIGFLDFGI 381
H DV AGN+ L DG + DFG+
Sbjct: 138 IHRDVKAGNILLGEDGSVQIADFGV 162
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 309 TRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
T+ + ME L G DL L + +++ + L + + H D+ A N+ L
Sbjct: 78 TKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLL 137
Query: 369 LRDGRIGFLDFGIVGRIS 386
G + DFG+ G+++
Sbjct: 138 SEHGEVKLADFGVAGQLT 155
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 309 TRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
T+ + ME L G DL L + +++ + L + + H D+ A N+ L
Sbjct: 78 TKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLL 137
Query: 369 LRDGRIGFLDFGIVGRIS 386
G + DFG+ G+++
Sbjct: 138 SEHGEVKLADFGVAGQLT 155
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 309 TRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 368
T+ + ME L G DL L + +++ + L + + H D+ A N+ L
Sbjct: 98 TKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLL 157
Query: 369 LRDGRIGFLDFGIVGRIS 386
G + DFG+ G+++
Sbjct: 158 SEHGEVKLADFGVAGQLT 175
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 308 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 367
ST+ + ME L G DL L + +++ + L + H D+ A N+
Sbjct: 89 STKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVL 148
Query: 368 LLRDGRIGFLDFGIVGRIS 386
L G + DFG+ G+++
Sbjct: 149 LSEQGDVKLADFGVAGQLT 167
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 355 ETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYES 407
+ H D+ + N++L +DG + DFGI ++ + ++L A I T Y S
Sbjct: 145 KILHRDIKSQNIFLTKDGTVQLGDFGIARVLN----STVELARACIGTPYYLS 193
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ ME L G LTD+ + + + ++ ++ L H D+ + ++ L DG
Sbjct: 119 VVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDG 178
Query: 373 RIGFLDFGIVGRIS 386
RI DFG ++S
Sbjct: 179 RIKLSDFGFCAQVS 192
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 348 FGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTW 390
F L + + + D+ NL + + G I DFG+ R+ +TW
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKGRTW 196
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 348 FGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTW 390
F L + + + D+ NL + + G I DFG+ R+ +TW
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKGRTW 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,129,147
Number of Sequences: 62578
Number of extensions: 471861
Number of successful extensions: 1510
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 25
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)