BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011663
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/485 (81%), Positives = 437/485 (90%), Gaps = 10/485 (2%)
Query: 1 MAISAFRGSRLPLLHPPQLPAVRGVPS------GLRKFNYRSKRFTLLAQYSQTQDLFSS 54
MA+SAFRG+RLPL H Q P R V G R F K F L AQYSQTQDLF+S
Sbjct: 1 MAVSAFRGTRLPLFHHSQFPVARTVSGTSKKMIGARNF----KGFVLTAQYSQTQDLFTS 56
Query: 55 RLQNSIENLPKLVEDIVQTSINTGPRGAIRLAQGIQAFVGVGSEWLTDVSKSRSSTSGLP 114
RLQ+ IE LPKLVEDIVQTSINTGPRG RL QG+QAFVGVG EWL D+SKS S++ GLP
Sbjct: 57 RLQSQIEKLPKLVEDIVQTSINTGPRGVTRLVQGVQAFVGVGGEWLNDLSKSTSASGGLP 116
Query: 115 TELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGE 174
+ELQLGLLSPLYLR+LFERMGATYIKLGQFIAS+PTLFPPEYV+EFQNCFD+ P VPF E
Sbjct: 117 SELQLGLLSPLYLRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEE 176
Query: 175 IKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVA 234
I++ L E+LGRPIESVYEYVDPTPIASAS+AQVHGARLRGSQ+DVVIKVLKPGIED LVA
Sbjct: 177 IRKILQEELGRPIESVYEYVDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVA 236
Query: 235 DLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGL 294
DLNF+YVV+RI EFL+PE SRTS+VGIVKDIRESMLEEVDF KEA NIESF+RYLE MGL
Sbjct: 237 DLNFIYVVSRIFEFLSPEFSRTSLVGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGL 296
Query: 295 TRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLAC 354
T QATAP+VY++CS+RRVLTMERLYGVPLTDLDSI SLVSSPENSLITALNVWFGSLLAC
Sbjct: 297 TGQATAPRVYKYCSSRRVLTMERLYGVPLTDLDSIRSLVSSPENSLITALNVWFGSLLAC 356
Query: 355 ETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
E+FHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAM++FLASIATEEYESMASALI+
Sbjct: 357 ESFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQ 416
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNAL 474
MGAT++D+D KAFA+DLEK+FSSIQELDTE+VVATARGT ++TTAV+AN+V+DERQMNAL
Sbjct: 417 MGATNRDVDGKAFAKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNAL 476
Query: 475 FLDLV 479
FLDLV
Sbjct: 477 FLDLV 481
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 166/309 (53%), Gaps = 3/309 (0%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
L + F +G TY+K GQ IASSP F EF+ DR P E+ + +E+LG
Sbjct: 96 LPQTFADLGPTYVKFGQIIASSPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDE 155
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
++ + P ASAS+AQVH A LR S ++VV+K+ +PGI + ADL + A+ +
Sbjct: 156 PARLFASFEEEPFASASIAQVHYATLR-SGEEVVVKIQRPGIRRRVAADLQILKRFAQTV 214
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E L R S +V D +++ EE+DF+ EA ++E++ +L A L + P+V+
Sbjct: 215 E-LAKLGRRLSAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWD 273
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+T RVLTMER++G+ + + +I + L F L FH D+HAGNL
Sbjct: 274 FTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNL 333
Query: 367 WLLRDGRIGFLDFGIVGRISPKT-WAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 425
++ GRI F DFGI+GRI P+T W +L A + +++ + ++ MGA
Sbjct: 334 YVDEAGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPET 393
Query: 426 AFARDLEKI 434
A+DLE+
Sbjct: 394 QAAKDLERF 402
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 21/325 (6%)
Query: 107 RSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDR 166
R +++ LP ++L L E +G ++K GQ +++ L PPEY +E DR
Sbjct: 42 RDTSAPLPQRVRLAL----------ESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDR 91
Query: 167 TPAVPF-GEIKRTLLE-DLGRPIESVYEYVDPTPIASASVAQVHGARLR----GSQDDVV 220
P PF G+I R ++E LGR +E ++ D P+ASASVAQVH A LR G +V
Sbjct: 92 VP--PFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVA 149
Query: 221 IKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAA 280
+KVL+PGI V+ DL+ + +A +E L + R +V + + + +E+D EAA
Sbjct: 150 VKVLRPGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAA 209
Query: 281 NIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSL 340
N RR + + P+V+ S+R VLT+E ++G+P+ ++ + +
Sbjct: 210 NASQLRRNFKGSDML---IVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLS 266
Query: 341 ITALNVWFGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASI 400
+ ++F + FHAD+H GN+++ DGR LDFGIVG ++ + + +
Sbjct: 267 RFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAF 326
Query: 401 ATEEYESMASALIEMGATDKDIDAK 425
+Y +A+A IE G +D A+
Sbjct: 327 FNRDYHRVATAHIESGWVPRDTRAE 351
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 175/322 (54%), Gaps = 15/322 (4%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
+R FE +G +IK GQ +++ L PP+ EE DR P PF G+ R +E+ LG
Sbjct: 57 IRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVP--PFCGQAARLKIEESLG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+E++++ D TP+ASAS+AQVH RL+ + ++VIKV++P IE V+ ADL + +AR
Sbjct: 115 CPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++ P+ +R + +V++ R+++L+E++ +EAAN RR + P+V+
Sbjct: 175 LVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTG---SDALYVPEVF 231
Query: 305 -QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
+HC VL MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H
Sbjct: 232 TEHCRE-HVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT 418
GN+++ + IG +D GIVG ++ + + + +Y +A +E G
Sbjct: 291 GNIFVSYEHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWV 349
Query: 419 DKDIDAKAFARDLEKIFSSIQE 440
D F + + I E
Sbjct: 350 PPDTKVDEFEFAIRTVLEPIFE 371
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR E +G +IK GQ +++ L PP+ +E D+ P P + + LG P
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ ++ D P+ASASVAQVH A+L+ S ++VV+KV++PG++ V+ DL +++++ARI
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLLARIA 177
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E + + R V +V D +++ +E+D +EAAN RR E L P+VY
Sbjct: 178 ERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 234
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YGVP+TDL +++ + + + ++F + FHAD+H GN+
Sbjct: 235 LCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GI+G ++ + + L + +Y +A I+ G
Sbjct: 295 FV--STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 352
Query: 421 DIDAKAFARDLEKIFSSIQE 440
D F + + I E
Sbjct: 353 DTKVNEFEAAIRTVCEPIFE 372
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 166/317 (52%), Gaps = 10/317 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGR 185
LR FE +G +IK GQ +++ L PP+ EE DR P+ G++ R +E LG+
Sbjct: 57 LRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFD-GQLAREQIEQALGQ 115
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
PIE+++ D P+ASASVAQVH ARL+ + ++VIKV++P I+ V+ D+ + + A+I
Sbjct: 116 PIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKI 175
Query: 246 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 305
+ FL P +R V ++++ R ++L+E++ EAAN RR E + P VY
Sbjct: 176 VAFLIPN-NRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFEN---SSHLYVPLVYS 231
Query: 306 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 365
VL MER+YG+P++D ++ + + + + V+F + FHAD+H GN
Sbjct: 232 DYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGN 291
Query: 366 LWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 292 VFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPD 351
Query: 422 IDAKAFARDLEKIFSSI 438
+ F L + I
Sbjct: 352 TKVEEFESALRTVLEPI 368
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 190/369 (51%), Gaps = 21/369 (5%)
Query: 82 AIRLAQGIQAFVGVGSE-WLTDVSKSRSSTSGLPTELQLGLLSPLYLRRLFERMGATYIK 140
+I L QGI V + W ++ R S L + Q GL +R FE +G +IK
Sbjct: 14 SILLEQGIDELVPARYQPWPGRLA--RRSLFWLKNKRQ-GLNRGARIRLAFEALGPIFIK 70
Query: 141 LGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIA 200
GQ +++ L PP+ EE DR P +R + LG IE++++ D TP+A
Sbjct: 71 FGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFDETPLA 130
Query: 201 SASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVG 260
SAS+AQVH ARL+ + ++VIKV++P IE V+ ADL + +AR++ P+ R +
Sbjct: 131 SASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGRLRPIE 190
Query: 261 IVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY-QHCSTRRVLTMERLY 319
+V++ R+++L+E++ +EAAN RR + P+V+ +HC +VL MER+Y
Sbjct: 191 VVEEYRKTILDELNLMREAANAIQLRRNFTG---SEALYVPEVFTEHCRE-QVLVMERIY 246
Query: 320 GVPLTDLDSISSLVSSPENSLITA---LNVWFGSLLACETFHADVHAGNLWLLRDG---- 372
G+P++D I++L ++ N + A + V+F + FHAD+H GN+++ +
Sbjct: 247 GIPVSD---IAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENP 303
Query: 373 -RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDL 431
IG +D GIVG ++ + + + +Y +A +E G D F +
Sbjct: 304 LWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAI 362
Query: 432 EKIFSSIQE 440
+ I E
Sbjct: 363 RTVLEPIFE 371
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 169/347 (48%), Gaps = 21/347 (6%)
Query: 111 SGLPTELQLG-LLSPLYL------------RRLFERMGATYIKLGQFIASSPTLFPPEYV 157
S LPT L++ LL+P +L R E +G ++K GQ +++ L P +
Sbjct: 26 SELPTPLKIFFLLAPWHLFPQPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMA 85
Query: 158 EEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQD 217
E + DR P P + + + + LG P+ ++ P P+ASASVAQVH A L Q
Sbjct: 86 ESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQ- 144
Query: 218 DVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKK 277
VV+KVL+PGIE V+ DL +Y++A +LE E R V +V D ++ +E+D ++
Sbjct: 145 KVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQR 204
Query: 278 EAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPE 337
EAAN RR E L P + + + VL MER++G+P+ D+ ++ +
Sbjct: 205 EAANASQLRRNFENSPLI---YIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMR 261
Query: 338 NSLITALNVWFGSLLACETFHADVHAGNLWL----LRDGRIGFLDFGIVGRISPKTWAAM 393
+ ++F + FHAD+H GN+++ D + +DFGIVG ++P + +
Sbjct: 262 VLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYL 321
Query: 394 DLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQE 440
L + +Y +A I+ G + F + + I E
Sbjct: 322 ARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIFE 368
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 166/317 (52%), Gaps = 7/317 (2%)
Query: 126 YLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR 185
++R +G T+IK+GQ ++ LFP EYVEE D PA + + + E+LG+
Sbjct: 87 WIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGK 146
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
PI +Y DP P+A+AS+ QVH A+L + +DVV+KV +PG++ + DL + +A+
Sbjct: 147 PIAKLYRSFDPVPLAAASLGQVHKAQLH-TGEDVVVKVQRPGLKKLFTIDLAILKKIAQY 205
Query: 246 LEFLNPELSR-TSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
+ +P+ R GI ++ + + +E D+ +E + ++FRR + P+VY
Sbjct: 206 FQN-HPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVK---VPRVY 261
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
++ ++LT+E L G+ ++ D++ + + + LL FHAD H G
Sbjct: 262 WRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPG 321
Query: 365 NLWLLRD-GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDID 423
NL + + G + F DFG++G I+P T + L +A + E + ++L+ +GA + D
Sbjct: 322 NLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETED 381
Query: 424 AKAFARDLEKIFSSIQE 440
R ++ + + +
Sbjct: 382 MGPIRRSVQFLLDNFMD 398
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 151/311 (48%), Gaps = 3/311 (0%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR L +G ++IK GQ +A+ P + +Y+ E D P P + E+LG+P
Sbjct: 170 LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQP 229
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+++ + IA+AS+ QV+ A LR + +DV IKV +P IE ++ DL +A L
Sbjct: 230 LENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFL 289
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
+ + + IV + E +LEE+D+ EA NIE F LE P VY++
Sbjct: 290 NGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDF---LENFKDDPTVKIPGVYKN 346
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
RVL ME + G+ TD +I L ++ LL FH D H GN+
Sbjct: 347 LCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNI 406
Query: 367 WLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 426
+ ++DGRI ++DFG V +S + + + E+Y MA+ +G KD D
Sbjct: 407 FAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSP 466
Query: 427 FARDLEKIFSS 437
LE I+ +
Sbjct: 467 IVPALEAIWQN 477
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLG 184
LR + +G +IK GQ +++ L P + +E DR P PF + L E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVP--PFNPQQSVALIEEQLG 117
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
++ + D P+ASASVAQVH A+L+ + ++VV+KV++PG++ V+ DL ++Y+ AR
Sbjct: 118 ARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLFAR 176
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
+ E + E R +V +V D +++ +E+D +EAAN +R E L P++Y
Sbjct: 177 LAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLL---YVPQIY 233
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
+VL MER+YGVP+TDL ++ + + + ++F + FHAD+H G
Sbjct: 234 WDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 365 NLWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
N+++ D + +D GIVG ++P+ + L + +Y +A I+ G
Sbjct: 294 NIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
D F + + I E
Sbjct: 354 DTQVNEFEAAIRTVCEPIFE 373
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 166/323 (51%), Gaps = 14/323 (4%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR L +G TYIK+GQ +++ P L PP +++E D+ P+ P R + E+LG P
Sbjct: 107 LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAP 166
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
E +Y + P PIA+AS+ QV+ +L+ + + V +KV +P + + D +Y++ +
Sbjct: 167 AEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLD---IYIMRSLS 222
Query: 247 EFLNPELS--RTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
+ + R+ +V I ++ + EE+++ +EA N E F + G + P +Y
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKF---AQLYGSLPEIYVPSIY 279
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
+ RRVLTME + G+ LT++ +I + + + + LL FHAD H G
Sbjct: 280 WQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPG 339
Query: 365 NLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDA 424
NL + DGR+ +LDFG++ I P + + + +++S+A +++ D D
Sbjct: 340 NLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDL 399
Query: 425 KAFARDLEKIF-----SSIQELD 442
K L ++F +S+ EL+
Sbjct: 400 KPIIPALGQVFGNALGASVAELN 422
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 170/333 (51%), Gaps = 16/333 (4%)
Query: 114 PTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFG 173
PTEL G LR + +G +IK GQ +++ L PP+ +E DR P PF
Sbjct: 51 PTELSRGA----RLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVP--PFD 104
Query: 174 EIKRTLL--EDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDV 231
K L E LG + V+ D P+ASASVAQVH ARL+ + ++VV+KV++PG++ V
Sbjct: 105 PKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPV 163
Query: 232 LVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEA 291
+ DL +++++A+ E + + R V IV D +++ +E+D +EAAN RR E
Sbjct: 164 IAQDLAWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFED 223
Query: 292 MGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSL 351
L P+VY +VL MER+YGVP+TD+ +++ + + + V+F +
Sbjct: 224 SELM---YVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQV 280
Query: 352 LACETFHADVHAGNLWL--LRDGRIGF--LDFGIVGRISPKTWAAMDLFLASIATEEYES 407
FHAD+H GN+++ ++ + +D GIVG ++ + + L + +Y
Sbjct: 281 FRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRR 340
Query: 408 MASALIEMGATDKDIDAKAFARDLEKIFSSIQE 440
+A I+ G + F + + I E
Sbjct: 341 VAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFE 373
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LRR+F R+G T++KLGQ +++ P L PP+Y+EE D P P E + +L
Sbjct: 150 LRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLS 209
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+++ V P PIA+AS+ QV+ A+LR S V +KV +PGIE+ + D + V +++
Sbjct: 210 LETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLI 269
Query: 247 ----EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 302
+F+ T ++ ++ + + +E+++ +EA N RR+ + P
Sbjct: 270 NKYVDFIT-----TDVLTLIDEFACRVYQELNYVQEAQNA---RRFKKLYADKADVLVPD 321
Query: 303 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 362
++ ++R+VLTME + G L + +I S + + T + LL FHAD H
Sbjct: 322 IFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPH 381
Query: 363 AGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 422
GNL DG++ FLDFG++ + A+ + + +YE+MA + D+
Sbjct: 382 PGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDV 441
Query: 423 DAKAFARDLEKIFS-----SIQELDTELVV 447
D L F ++ EL+ + +V
Sbjct: 442 DVTPIIPALRDFFDDALNYTVSELNFKTLV 471
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 165/322 (51%), Gaps = 20/322 (6%)
Query: 123 SPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED 182
SP LR+ FE +G T+IK+GQ +++ P L P Y++E + P F +I+ E+
Sbjct: 32 SPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEE 91
Query: 183 LGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVV 242
L I++ + Y D TPI SAS+AQVH A L+ + V++K+ +PGI +++ DL+ ++
Sbjct: 92 LSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGR-FVIVKIQRPGIAEMMKTDLS---II 147
Query: 243 ARILEFLNPELSRTSMVGIVKDIRESMLE-------EVDFKKEAANIESFRRYLEAMGLT 295
++L +++T + D +E++ E E+DF E NI+ F++ E +
Sbjct: 148 KKLL-----NITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKFKKLNEDVKFV 202
Query: 296 RQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACE 355
R P T +++ ME++ G+ + +L + + E +F +
Sbjct: 203 R---TPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDG 259
Query: 356 TFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEM 415
FH D H GNL L+R+ I ++DFGI+G IS +++ + ++A + M S ++ +
Sbjct: 260 FFHGDPHPGNL-LIRENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSI 318
Query: 416 GATDKDIDAKAFARDLEKIFSS 437
G ++ + +E +F +
Sbjct: 319 GVKKGYVNRNSLYESIEYLFDN 340
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 8/294 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LRR E +G ++K GQ +++ L P + +E + D+ P R + E L P
Sbjct: 55 LRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSP 114
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ ++ P+ASAS+AQVH A L+ + +VV+KV++PGIE + D+ + +VAR++
Sbjct: 115 VSELFADFQTYPMASASIAQVHAATLKNGK-EVVVKVIRPGIEKTIRLDIALMLLVARLV 173
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E + R V +VKD ++++E+D ++EAAN +R L P+VY
Sbjct: 174 ENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELI---YIPEVYWE 230
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+ RVL MER+YGVP+ D++ + + + + ++F + FHAD+H GN+
Sbjct: 231 MTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 290
Query: 367 WL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 416
++ + R +D GIVG ++P+ + + L + +Y +A I G
Sbjct: 291 FVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSG 344
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 176/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 176/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 155/302 (51%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 155/302 (51%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 155/302 (51%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 8/294 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LRR E +G ++K GQ +++ P L P + V E + D GE +R + LG
Sbjct: 52 LRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVESSLGAS 111
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ V+ + P+ASASVAQVH A L+ + +VVIKV++PGI+ V+ D+ + VAR +
Sbjct: 112 VAEVFASFNIEPLASASVAQVHTAVLKDGR-EVVIKVIRPGIDKVIAQDIALLLRVARWV 170
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E + R V IV+D R ++ +E+D ++EAAN RR L P+VY
Sbjct: 171 ENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSPLL---YVPEVYWE 227
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+ VL MER+YG+P+TDL ++++ + + + ++F + FHAD+H GN+
Sbjct: 228 YTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHADMHPGNI 287
Query: 367 WLLRDG----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 416
++ + + +D IVG ++ + L ++ +Y +A +E G
Sbjct: 288 FVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESG 341
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 175/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 175/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 186/374 (49%), Gaps = 25/374 (6%)
Query: 84 RLAQGIQAFVGVG-SEWLTDVSKSRSSTSGLPTELQLGLLSP-----LYLRRLFERMGAT 137
RL I F+ G E + D+ +R G + + P + LR + +G
Sbjct: 8 RLYNIIHTFLRYGIDEVIPDIPLTRGIRCGRKSLFWVKNQYPNEPFGVRLRLALQELGPV 67
Query: 138 YIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGRPIESVYEYVDP 196
+IKLGQ +++ LF PE ++ D A G++ R L+E+ LG +E ++ D
Sbjct: 68 WIKLGQMLSTRRDLFEPELADQLALLQDSVEAFD-GKLARRLIEEALGDKLEKWFDDFDE 126
Query: 197 TPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPE 252
T +ASAS+AQVH A+ +Q +VV+KVL+P IE V+ DL +Y +A + LN E
Sbjct: 127 TALASASIAQVHIAKFNQNQPLAGKEVVLKVLRPEIERVIKDDLALMYRLASWIPRLNKE 186
Query: 253 LSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRV 312
R V +V++ +++L+E+D +KE N R E + P++YQ + V
Sbjct: 187 GRRLRPVEVVREYEKTLLDELDLRKEMVNAIRLRNNFEN---SEMLYVPEMYQEFCHKNV 243
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ MER+YG+P+ ++D + + + + + V+F + FHAD+H GN+++ +
Sbjct: 244 IVMERIYGIPVANIDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVNPNH 303
Query: 373 -----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT--DKDIDA- 424
IG +D GIVG ++ + + +Y +A +E G T D DIDA
Sbjct: 304 PENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPADTDIDAF 362
Query: 425 -KAFARDLEKIFSS 437
+AF E IF+
Sbjct: 363 EEAFREVCEPIFAK 376
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 168/311 (54%), Gaps = 15/311 (4%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G +IK GQ +++ LFPP + D+ PF GE+ + +E LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQV--APFDGELAKQQMEKALG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+E+ + D P+ASAS+AQVH ARL+ + +VV+KV++P I V+ +DL ++ +AR
Sbjct: 115 GPLENWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
I+ PE R V +V++ +++L+E+D ++EAAN RR E + + P+V+
Sbjct: 175 IVAGAMPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEG---SEELYVPEVF 231
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
S V+ ER+YG+ ++D++ + + ++ + ++V+F + FHAD+H G
Sbjct: 232 PDFSNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 365 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG--A 417
N+++ + IG LD GIVG ++ + + + +Y +A ++ G
Sbjct: 292 NVFVKPEHPENPMWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVP 350
Query: 418 TDKDIDAKAFA 428
D ++D FA
Sbjct: 351 ADTNVDEFEFA 361
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 178/337 (52%), Gaps = 23/337 (6%)
Query: 108 SSTSGLPTELQLGLL--------SPL--YLRRLFERMGATYIKLGQFIASSPTLFPPEYV 157
+ + LP L+ GL PL LR + +G +IK GQ +++ LFPP
Sbjct: 28 HALTQLPKRLRKGLFWIKNKYPEKPLGERLRLALQELGPVWIKFGQMMSTRRDLFPPHLA 87
Query: 158 EEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVYEYVDPTPIASASVAQVHGARLRGS 215
++ D+ PF G++ + +E +LG P+++ + D P+ASAS+AQVH A+L+ S
Sbjct: 88 DQLALLQDQV--APFDGQLAKDQMEMELGGPLDNWFTDFDIKPLASASIAQVHTAKLKDS 145
Query: 216 QDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDF 275
++V+KV++P I V+ +D+ +Y +AR++E PE R V ++++ +++L+E+D
Sbjct: 146 GREIVLKVIRPDIRPVIESDIRLMYRMARLVEQHIPEARRLKPVEVIEEYEKTLLDELDL 205
Query: 276 KKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSS 335
++EA+N RR E + + P+V S+ ++ ER+YG+ ++D++ + ++
Sbjct: 206 RREASNAMQLRRNFEG---SEELYVPEVILDLSSEHLMVSERIYGIQVSDIEQLEKNGTN 262
Query: 336 PENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG-----RIGFLDFGIVGRISPKTW 390
+ ++V+F + FHAD+H GN+++ D IG LD GIVG ++ +
Sbjct: 263 MKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPDNPENPQWIG-LDCGIVGTLNKEDK 321
Query: 391 AAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 427
+ L +Y +A ++ G D + + F
Sbjct: 322 RYLAENLLGFFNSDYHKVAQLHVDSGWVPADTNVEEF 358
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 168/308 (54%), Gaps = 13/308 (4%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
LR + +G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+++ + D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR
Sbjct: 115 GPLDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++E PE R V ++++ +++L+E+D ++EA+N RR E + + P+V
Sbjct: 175 LVEQHIPEARRLKPVKVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVI 231
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
S+ ++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H G
Sbjct: 232 LDLSSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 365 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATD 419
N+++ D IG LD GIVG ++ + + L +Y +A ++ G
Sbjct: 292 NVFVNPDNPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVP 350
Query: 420 KDIDAKAF 427
D + + F
Sbjct: 351 ADTNVEEF 358
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 16/333 (4%)
Query: 114 PTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFG 173
PTEL G LR + +G +IK GQ +++ L P + +E DR P PF
Sbjct: 51 PTELSRGA----RLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVP--PFD 104
Query: 174 EIKRTLL--EDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDV 231
K L E LG + V+ D P+ASASVAQVH ARL+ + ++VV+KV++PG++ V
Sbjct: 105 PQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPV 163
Query: 232 LVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEA 291
+ DL +++++A+ E + + R V IV D +++ +E+D +EAAN RR E
Sbjct: 164 IAQDLAWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEG 223
Query: 292 MGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSL 351
L P+VY +VL MER+YGVP+TD+ +++ + + + V+F +
Sbjct: 224 SELM---YVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQV 280
Query: 352 LACETFHADVHAGNLWL--LRDGRIGF--LDFGIVGRISPKTWAAMDLFLASIATEEYES 407
FHAD+H GN+++ ++ + +D GIVG ++ + + L + +Y
Sbjct: 281 FRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRR 340
Query: 408 MASALIEMGATDKDIDAKAFARDLEKIFSSIQE 440
+A I+ G F + + I E
Sbjct: 341 VAQLHIDSGWVPAHTKVNEFEAAIRTVCEPIFE 373
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 175/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIETELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
I+++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 IIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 163/318 (51%), Gaps = 7/318 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR E++G +IK GQ +++ LFPP ++ D+ + K+ + LG P
Sbjct: 57 LRLALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ES ++ D P+ASAS+AQVH A L+ + +VVIKV++P I V+ AD+ +Y +AR +
Sbjct: 117 VESQFDDFDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLARWV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
L P+ R +V D +++L+E++ +EAAN RR A G + P++Y
Sbjct: 177 PRLLPDGRRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNF-ADG--QMLYVPEIYSD 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+ +L MER+YG+P++D+ ++ + + + V+F + FHAD+H GN+
Sbjct: 234 YCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPGNI 293
Query: 367 WLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 422
++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADT 353
Query: 423 DAKAFARDLEKIFSSIQE 440
+ + F + + I E
Sbjct: 354 NVEDFEFAIRTVCEPIFE 371
>sp|C3LPS7|UBIB_VIBCM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=ubiB PE=3 SV=1
Length = 544
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ LFPP + D+ + K+ + E+LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+ ++ D P+ASAS+AQVH A+L+ + DVV+KV++P I + AD+ +Y VARI+
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
PE R V +V++ +++L+E+D ++EAAN RR E + + P+V
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEN---SEELYVPEVLTD 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
V+ ER+YG+ ++DL + + ++ + ++V+F + FHAD+H GN+
Sbjct: 234 FCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNV 293
Query: 367 WLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
++ + IG LD GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVNPNHPENPQWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLD 352
Query: 422 IDAKAF 427
+ F
Sbjct: 353 TNVDEF 358
>sp|Q9KVQ4|UBIB_VIBCH Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=ubiB PE=3 SV=1
Length = 544
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ LFPP + D+ + K+ + E+LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+ ++ D P+ASAS+AQVH A+L+ + DVV+KV++P I + AD+ +Y VARI+
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
PE R V +V++ +++L+E+D ++EAAN RR E + + P+V
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEN---SEELYVPEVLTD 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
V+ ER+YG+ ++DL + + ++ + ++V+F + FHAD+H GN+
Sbjct: 234 FCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNV 293
Query: 367 WLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
++ + IG LD GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVNPNHPENPQWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLD 352
Query: 422 IDAKAF 427
+ F
Sbjct: 353 TNVDEF 358
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 174/316 (55%), Gaps = 19/316 (6%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLE 432
+ D +AF + ++
Sbjct: 348 WVSEKTDLQAFEQAIK 363
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 175/318 (55%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ R+ IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISREHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|A4WFY3|UBIB_ENT38 Probable ubiquinone biosynthesis protein UbiB OS=Enterobacter sp.
(strain 638) GN=ubiB PE=3 SV=1
Length = 546
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 164/306 (53%), Gaps = 8/306 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR- 185
LR + +G +IK GQ +++ LFPP+ ++ DR K+ + E +G
Sbjct: 57 LRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDRVAPFDGARAKQQIEEAMGNI 116
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
P+E+ ++ D P+ASAS+AQVH ARL+ + ++VIKV++P I V+ AD+ +Y +AR
Sbjct: 117 PVETWFDDFDIKPLASASIAQVHTARLKENGKEIVIKVIRPDILPVIRADMKLIYRLARW 176
Query: 246 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 305
+ L P+ R + +V++ +++++E++ +E+AN RR E + P+VY
Sbjct: 177 VPRLLPDGRRLRPMEVVREYEKTLIDELNLLRESANAIQLRRNFENSPML---YVPEVYS 233
Query: 306 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 365
++ ++ MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN
Sbjct: 234 DYCSQNMMVMERIYGIPVSDIVALENQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 293
Query: 366 LWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 IFVSYEHPEDPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPD 353
Query: 422 IDAKAF 427
+ + F
Sbjct: 354 TNVEEF 359
>sp|A1RP80|UBIB_SHESW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain W3-18-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 173/318 (54%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|A4Y2Q3|UBIB_SHEPC Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3
SV=1
Length = 549
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 173/318 (54%), Gaps = 19/318 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKI 434
+ D +AF + ++ +
Sbjct: 348 WVSEKTDLQAFEQAIKVV 365
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 8/294 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR ER+G ++K GQ +++ L P + E DR P P + +++ LGRP
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ D P+ASAS+AQVH L + +V +KVL+P + +++ ADL + V A L
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGR-EVAVKVLRPNVLNIIEADLALLRVAAAWL 171
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E L+P+ R +V + + +E+D +EAAN RR + + L P++
Sbjct: 172 ERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLI---MLPEMIWD 228
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
S+ VL MER++GVP++ ++++ + + ++F + FHAD+H GN+
Sbjct: 229 LSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNI 288
Query: 367 WLLRD----GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 416
+ GR LDFGIVG + + + + +Y +A IE G
Sbjct: 289 MVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESG 342
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLG 184
LR + +G +IK GQ +++ L P + +E DR P PF L E LG
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVP--PFDPQHAVALIEEQLG 117
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
+ V+ D P+ASASVAQVH ARL+ S ++VV+KV++PG++ V+ DL +++++A+
Sbjct: 118 AKVGEVFSRFDVEPLASASVAQVHAARLK-SGEEVVVKVVRPGLKPVIAQDLAWLFLIAK 176
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
E + + R V IV D +++ +E+D +EAAN RR E L P+VY
Sbjct: 177 AAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELM---YVPQVY 233
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
+VL MER+YGVP+TD+ +++ + + + V+F + FHAD+H G
Sbjct: 234 WDLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 365 NLWL--LRDGRIGF--LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
N+++ ++ + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 294 NIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
F + + I E
Sbjct: 354 QTKVNEFEAAIRTVCEPIFE 373
>sp|A5F4G3|UBIB_VIBC3 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=ubiB PE=3 SV=1
Length = 544
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ LFPP + D+ + K+ + E+LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPYIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+ ++ D P+ASAS+AQVH A+L+ + DVV+KV++P I + AD+ +Y VARI+
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
PE R V +V++ +++L+E+D ++EAAN RR E + + P+V
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEN---SEELYVPEVLTD 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
V+ ER+YG+ ++DL + + ++ + ++V+F + FHAD+H GN+
Sbjct: 234 FCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNV 293
Query: 367 WLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
++ + IG LD GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVNPNHPENPQWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLD 352
Query: 422 IDAKAF 427
+ F
Sbjct: 353 TNVDEF 358
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 17/302 (5%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MG 416
G
Sbjct: 350 AG 351
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 155/298 (52%), Gaps = 14/298 (4%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + +E DR PF G+ R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVE--PFEGQTARIIIETALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
+ +ES + + D P+ASAS++QVH A L ++ VV+KVL+P IE + D+ + +A
Sbjct: 113 KSVESAFAHFDTVPLASASISQVHAATLHDRRE-VVVKVLRPDIEHQISDDIALLKSLAT 171
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++E +P + IV +I ++ E+D ++E AN RR+ EA + P+V
Sbjct: 172 LVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEA---SDDIYVPEVI 228
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
+ RVLT+ER+YG+P D+ + + + + V++ + FHAD H+G
Sbjct: 229 WSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSG 288
Query: 365 NLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 416
N+W+ D R LDFGI+G++S K + +I ++Y +A +E G
Sbjct: 289 NIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAG 346
>sp|Q7VN62|UBIB_HAEDU Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ubiB PE=3 SV=1
Length = 542
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 169/327 (51%), Gaps = 25/327 (7%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G +IKLGQ +A+ LF P ++ D PF G++ R ++E LG
Sbjct: 57 LRLALQELGPVWIKLGQMLATRRDLFEPALADQLALLQDSV--APFDGKLARKIIEQALG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVY 240
+E+ ++ D +ASAS+AQVH A +Q +VV+KV++P IE ++ AD+ +Y
Sbjct: 115 NTLETWFDDFDEQALASASIAQVHTATFNKNQPLAGQNVVLKVIRPDIEHIIKADIALMY 174
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A+++ +L+ + R +V++ +++L+E+D +E AN R E +
Sbjct: 175 QLAKLIPYLSDDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYV 231
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITA---LNVWFGSLLACETF 357
P +Y + V+ MER+YG+P++D I++L + N + A + V+F + F
Sbjct: 232 PAMYPDFCHKNVIVMERIYGIPVSD---IATLTENGTNMKLLAERGVQVFFTQVFRDSFF 288
Query: 358 HADVHAGNLWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALI 413
HAD+HAGN+++ D + +D GIVG ++ + + +Y +A I
Sbjct: 289 HADMHAGNIFVNPNHPEDPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHI 348
Query: 414 EMGATDKDIDAKAFARDLEKIFSSIQE 440
E G T D D AF E+ F ++ E
Sbjct: 349 ESGWTPADTDVDAF----EEAFRTVCE 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,201,803
Number of Sequences: 539616
Number of extensions: 6902930
Number of successful extensions: 21557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 20899
Number of HSP's gapped (non-prelim): 241
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)