BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011664
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXX 247
TFD I T+ ++ +E LK + R+G + LLYGP GTGK
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 248 XXYD--------VYDVDLSRVADDADXXXXXXXXXXXXVILIEDLD----RFLVEKPAA- 294
+ + D + A +I ++++D R E +A
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSAD 298
Query: 295 ----VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCD 348
+L +L MDG N + ++ N D +D ALLRPGR+D + PL +
Sbjct: 299 REIQRTLMELLTQMDGFDN---LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 26/167 (15%)
Query: 199 KNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYDVYDVDLS 258
K ++ +E L Y ++G R LLYGP GTGK V+ S
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 259 -----------RVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAVS---------LS 298
R+ D +I I+++D ++ A + L
Sbjct: 241 EFVHKYLGEGPRMVRDV---FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI 297
Query: 299 GVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFP 345
+L MDG S + ++ N D +D ALLRPGR+D I FP
Sbjct: 298 ELLTQMDGFDQSTNVK---VIMATNRADTLDPALLRPGRLDRKIEFP 341
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXX 246
+TF ++ + K V ++L +L+ + +LG + L+ GP GTGK
Sbjct: 9 TTFADVAGCDEAKEEV-AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 247 XXXYDVY------------DVDLSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAA 294
+ V SRV D +I I+++D ++ A
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRD----MFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 295 V---------SLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFP 345
+ +L+ +L MDG + E +++ N D +D ALLRPGR D +
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGN---EGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180
Query: 346 LCD 348
L D
Sbjct: 181 LPD 183
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 97/256 (37%), Gaps = 46/256 (17%)
Query: 184 THPSTFDT--ISMETD------------LKNRVKSDLESF---LKAKHYYHRLGRVWKRS 226
T PS FD+ +ME D L +++ +E+ +K + +G +
Sbjct: 158 TLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKG 217
Query: 227 YLLYGPSGTGKXXXXXXXXXXXX-----------YDVYDVDLSRVADDADXXXXXXXXXX 275
L+YGP GTGK +Y + +++ DA
Sbjct: 218 ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA---FALAKEKA 274
Query: 276 XXVILIEDLD-----RFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT-MNSKDHVD 329
+I I++LD RF EK + + + L+ ++RV V N D +D
Sbjct: 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334
Query: 330 QALLRPGRIDVHIHFPLCDFSS---FKTLASSYLGLKD----HKLFPQVEEIFQNGSSLS 382
ALLR GR+D I FPL S + S + D +L +E NG+ L
Sbjct: 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF--NGAQLK 392
Query: 383 PAEIGELMIANRNSPS 398
+ MIA RN S
Sbjct: 393 AVTVEAGMIALRNGQS 408
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 28/165 (16%)
Query: 209 FLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYDVYDV------------D 256
FLK Y LG + LL GP GTGK + +
Sbjct: 29 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 88
Query: 257 LSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAVSLSG----------VLNFMDG 306
SRV D +I I+++D + A +SG +L MDG
Sbjct: 89 ASRVRD----LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144
Query: 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
+ +++ N + +D AL+RPGR D + DF+
Sbjct: 145 FGSENA--PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 26/169 (15%)
Query: 200 NRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYDVYDVDLSR 259
++ +E LK + ++G + LLYGP GTGK V S
Sbjct: 27 QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86
Query: 260 V--------ADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAVS---------LSGVLN 302
+ A +I I+++D ++ A++ L +L
Sbjct: 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146
Query: 303 FMDGVLNSCCFEER---VMVFTMNSKDHVDQALLRPGRIDVHIHFPLCD 348
MDG F+ R ++ N D +D A+LRPGR D I P D
Sbjct: 147 EMDG------FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 300 VLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFP 345
+LN +DG S + ++ N D +D ALLRPGRID I FP
Sbjct: 275 LLNQLDGFETSKNIK---IIMATNRLDILDPALLRPGRIDRKIEFP 317
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGK 237
ST+D + T +K +E +K + LG + +LYGP GTGK
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGK 195
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 27/175 (15%)
Query: 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXX 247
TF + + +K +E FLK ++R+G + LL GP GTGK
Sbjct: 14 TFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 248 XXYDVY------------DVDLSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAV 295
+ V +RV D ++ I+++D V +
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRD----LFAQAKAHAPCIVFIDEID--AVGRHRGA 126
Query: 296 SLSGVLNFMDGVLNSCCFE-------ERVMVF-TMNSKDHVDQALLRPGRIDVHI 342
L G + + LN E E ++V N D +D ALLRPGR D I
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 318 MVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
++F N + +D ALLRPGRID + F L D
Sbjct: 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 297 LSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
++ +L MDG+ + ++ N D +D A+LRPGR+D I+ PL D S
Sbjct: 139 INQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 297 LSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
++ +L MDG+ + ++ N D +D A+LRPGR+D I+ PL D S
Sbjct: 601 INQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 297 LSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
++ +L MDG+ + ++ N D +D A+LRPGR+D I+ PL D S
Sbjct: 601 INQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 56/161 (34%), Gaps = 28/161 (17%)
Query: 209 FLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYD------------VYDVD 256
FLK +H +G + LL GP G GK V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 257 LSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAV---------SLSGVLNFMDGV 307
+RV D ++ I+++D ++ + V +L+ +L MDG
Sbjct: 118 AARVRD----LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173
Query: 308 LNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCD 348
V++ N D +D ALLRPGR D I D
Sbjct: 174 EKDTAI---VVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 28/165 (16%)
Query: 208 SFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYD------------VYDV 255
FLK +H +G + LL GP G GK V
Sbjct: 48 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 107
Query: 256 DLSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAV---------SLSGVLNFMDG 306
+RV D ++ I+++D ++ + V +L+ +L MDG
Sbjct: 108 GAARVRD----LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163
Query: 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
V++ N D +D ALLRPGR D I D
Sbjct: 164 FEKDTAI---VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 28/164 (17%)
Query: 209 FLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYD------------VYDVD 256
FLK +H +G + LL GP G GK V
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 257 LSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAV---------SLSGVLNFMDGV 307
+RV D ++ I+++D ++ + V +L+ +L MDG
Sbjct: 94 AARVRD----LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149
Query: 308 LNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
V++ N D +D ALLRPGR D I D
Sbjct: 150 EKDTAI---VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 28/164 (17%)
Query: 209 FLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXYD------------VYDVD 256
FLK +H +G + LL GP G GK V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 257 LSRVADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAV---------SLSGVLNFMDGV 307
+RV D ++ I+++D ++ + V +L+ +L MDG
Sbjct: 118 AARVRD----LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173
Query: 308 LNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351
V++ N D +D ALLRPGR D I D
Sbjct: 174 EKDTAI---VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Query: 209 FLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXXXXY--------DVYDVDLSRV 260
+LK+ + +LG + LL GP G GK + +V
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 261 ADDADXXXXXXXXXXXXVILIEDLDRFLVEKPAAVSLSGVLNF------------MDGVL 308
A ++ I+++D V K + ++SG N MDG+
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEID--AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141
Query: 309 NSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPL 346
+ + +++ + N D +D AL+RPGR+D H+ L
Sbjct: 142 TT---DHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 300 VLNFMDGVLNSCCFEER---VMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356
+LN +DG F++R ++ N + +D AL+RPGRID I F D S+ K +
Sbjct: 309 LLNQLDG------FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI- 361
Query: 357 SSYLGLKDHKL 367
LG+ K+
Sbjct: 362 ---LGIHTSKM 369
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 23/169 (13%)
Query: 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKXXXXXXXXXX 247
T+ I D++ + + + ++ + LG V LL GP G GK
Sbjct: 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67
Query: 248 XXYDVYDVD----LSRVADDADXXXXX----XXXXXXXVILIEDLDRFLV-----EKPAA 294
+ V L+ +++ VI +++D E A+
Sbjct: 68 SGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS 127
Query: 295 VSL-SGVLNFMDGVLNSCCFEERVMVFTM---NSKDHVDQALLRPGRID 339
V + + +L MDG E R VF M N D +D A+LRPGR+D
Sbjct: 128 VRVVNQLLTEMDG------LEARQQVFIMAATNRPDIIDPAILRPGRLD 170
>pdb|2E9X|D Chain D, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|H Chain H, The Crystal Structure Of Human Gins Core Complex
pdb|2Q9Q|B Chain B, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|F Chain F, The Crystal Structure Of Full Length Human Gins Complex
Length = 223
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 321 TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG---LKDHKLFPQV---EEI 374
M +H+++ L R R D+ + + + + SSYL +K K FP V E+
Sbjct: 54 VMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKT 113
Query: 375 FQNG--SSLSPAEIG 387
G SSLSP E+
Sbjct: 114 RPEGEPSSLSPEELA 128
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 291 KPAAVSLSGVLNFM--DGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHF 344
+P V LSG LN D ++ + E V + ++ D++D + +R G VHI F
Sbjct: 48 RPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAF 103
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 121 ATARTLVLKLRKADRRRILRPYLQHIHAVSDELEQKKKRDLRLFVNLRNDRDGCCGRWRS 180
ATA+ +++ + R +L + H+ AV+ E+ + LF R + + G +
Sbjct: 10 ATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVI---IPLFEKARRESELASGPFAG 66
Query: 181 VPFTHPSTFDTISMETDLK-NRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGT 235
VP+ T+ + D+ + +K ES +A H + + R+ ++L G + T
Sbjct: 67 VPYLLKDL--TVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNT 120
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 121 ATARTLVLKLRKADRRRILRPYLQHIHAVSDELEQKKKRDLRLFVNLRNDRDGCCGRWRS 180
ATA+ +++ + R +L + H+ AV+ E+ + LF R + + G +
Sbjct: 10 ATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVI---IPLFEKARRESELASGPFAG 66
Query: 181 VPFTHPSTFDTISMETDLK-NRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGT 235
VP+ T+ + D+ + +K ES +A H + + R+ ++L G + T
Sbjct: 67 VPYLLKDL--TVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNT 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,077,395
Number of Sequences: 62578
Number of extensions: 513936
Number of successful extensions: 1089
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 47
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)