Query 011664
Match_columns 480
No_of_seqs 506 out of 3188
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1.4E-79 3E-84 625.5 38.3 404 6-415 9-438 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-49 6E-54 391.9 19.4 215 181-398 142-373 (406)
3 KOG0739 AAA+-type ATPase [Post 100.0 8.5E-47 1.8E-51 365.1 12.1 280 182-472 125-423 (439)
4 KOG0730 AAA+-type ATPase [Post 100.0 9E-46 2E-50 389.9 17.5 247 183-478 427-688 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-44 2.2E-49 377.1 19.2 259 184-477 505-782 (802)
6 KOG0738 AAA+-type ATPase [Post 100.0 1.8E-44 4E-49 359.5 15.1 262 183-478 205-483 (491)
7 KOG0734 AAA+-type ATPase conta 100.0 2.4E-42 5.2E-47 354.7 18.5 204 186-393 300-517 (752)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.3E-41 7.1E-46 351.0 20.9 219 186-408 186-419 (802)
9 KOG0736 Peroxisome assembly fa 100.0 5.7E-41 1.2E-45 356.6 18.3 264 181-477 663-945 (953)
10 KOG0726 26S proteasome regulat 100.0 1.1E-39 2.4E-44 314.9 10.8 214 181-397 176-406 (440)
11 KOG0727 26S proteasome regulat 100.0 5.4E-39 1.2E-43 305.1 15.1 214 183-399 148-378 (408)
12 KOG0731 AAA+-type ATPase conta 100.0 2.6E-38 5.7E-43 342.3 18.9 212 184-399 305-535 (774)
13 KOG0728 26S proteasome regulat 100.0 2.2E-38 4.8E-43 300.6 14.8 211 185-398 142-369 (404)
14 PTZ00454 26S protease regulato 100.0 9.3E-37 2E-41 317.4 20.4 210 183-395 138-364 (398)
15 TIGR01243 CDC48 AAA family ATP 100.0 9.8E-37 2.1E-41 341.3 22.0 260 185-477 448-723 (733)
16 COG0464 SpoVK ATPases of the A 100.0 3.4E-36 7.3E-41 323.2 22.5 238 183-470 235-488 (494)
17 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-36 2.8E-41 303.4 15.9 263 185-470 87-364 (386)
18 COG0465 HflB ATP-dependent Zn 100.0 1.8E-36 3.9E-41 323.1 17.4 207 184-394 144-367 (596)
19 KOG0652 26S proteasome regulat 100.0 1.9E-36 4.1E-41 288.8 12.6 214 181-397 162-392 (424)
20 KOG0735 AAA+-type ATPase [Post 100.0 8.3E-36 1.8E-40 314.7 18.1 216 177-395 652-883 (952)
21 PRK03992 proteasome-activating 100.0 3.5E-35 7.6E-40 306.1 20.7 212 181-395 122-350 (389)
22 COG1223 Predicted ATPase (AAA+ 100.0 5.4E-35 1.2E-39 278.8 16.4 198 185-391 116-328 (368)
23 KOG0729 26S proteasome regulat 100.0 2.1E-35 4.6E-40 282.4 12.8 224 180-406 167-407 (435)
24 PTZ00361 26 proteosome regulat 100.0 1.4E-34 3E-39 303.4 19.8 211 182-395 175-402 (438)
25 TIGR01241 FtsH_fam ATP-depende 100.0 8.6E-34 1.9E-38 304.6 20.4 206 184-393 49-271 (495)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-33 3.1E-38 299.7 21.2 202 185-394 223-441 (489)
27 KOG0740 AAA+-type ATPase [Post 100.0 1.2E-33 2.6E-38 290.8 13.7 247 185-472 148-411 (428)
28 TIGR03689 pup_AAA proteasome A 100.0 2.3E-32 5.1E-37 290.3 18.4 202 184-393 176-406 (512)
29 CHL00176 ftsH cell division pr 100.0 3.6E-32 7.9E-37 297.1 19.3 207 183-393 176-399 (638)
30 TIGR01242 26Sp45 26S proteasom 100.0 8E-32 1.7E-36 278.8 20.3 212 182-396 114-342 (364)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.7E-32 1E-36 311.2 15.6 187 212-398 1618-1858(2281)
32 KOG0651 26S proteasome regulat 100.0 4.7E-32 1E-36 264.4 9.7 208 185-395 127-351 (388)
33 PRK10733 hflB ATP-dependent me 100.0 2.2E-30 4.8E-35 285.3 19.9 207 185-395 147-370 (644)
34 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-29 3.2E-34 283.5 22.2 207 185-394 173-393 (733)
35 KOG0730 AAA+-type ATPase [Post 100.0 6.7E-30 1.4E-34 270.1 16.5 207 185-396 180-400 (693)
36 KOG0732 AAA+-type ATPase conta 100.0 3.1E-29 6.7E-34 278.2 18.0 208 184-394 259-486 (1080)
37 KOG0741 AAA+-type ATPase [Post 100.0 7.7E-30 1.7E-34 262.6 10.4 251 185-471 214-496 (744)
38 PLN00020 ribulose bisphosphate 100.0 5.5E-28 1.2E-32 243.9 21.2 192 185-380 110-330 (413)
39 PF14363 AAA_assoc: Domain ass 99.9 1E-21 2.2E-26 165.8 10.3 96 22-119 1-97 (98)
40 PF05496 RuvB_N: Holliday junc 99.8 1.4E-19 3.1E-24 172.5 17.4 195 185-395 19-227 (233)
41 PF00004 AAA: ATPase family as 99.8 2.3E-20 5E-25 163.7 9.1 117 227-346 1-132 (132)
42 KOG0742 AAA+-type ATPase [Post 99.8 1.2E-19 2.5E-24 183.0 13.5 195 186-392 351-587 (630)
43 TIGR02880 cbbX_cfxQ probable R 99.8 5.2E-19 1.1E-23 177.2 14.3 172 189-369 20-217 (284)
44 TIGR02881 spore_V_K stage V sp 99.8 2.1E-18 4.6E-23 170.7 18.1 175 188-371 4-202 (261)
45 PRK00080 ruvB Holliday junctio 99.8 2.9E-18 6.2E-23 175.3 17.2 193 185-393 20-226 (328)
46 CHL00181 cbbX CbbX; Provisiona 99.8 2.9E-18 6.3E-23 172.0 16.2 172 190-370 23-219 (287)
47 TIGR00635 ruvB Holliday juncti 99.8 8E-18 1.7E-22 169.8 16.6 189 188-392 2-204 (305)
48 COG0466 Lon ATP-dependent Lon 99.8 1.6E-17 3.5E-22 178.1 17.5 204 190-411 323-556 (782)
49 TIGR00763 lon ATP-dependent pr 99.7 1.7E-17 3.7E-22 187.2 15.7 206 191-411 321-553 (775)
50 KOG0744 AAA+-type ATPase [Post 99.7 2.2E-18 4.9E-23 169.7 7.0 169 188-361 140-341 (423)
51 COG2255 RuvB Holliday junction 99.7 1.3E-16 2.9E-21 155.2 16.4 194 185-395 21-229 (332)
52 KOG2004 Mitochondrial ATP-depe 99.7 2.5E-16 5.5E-21 168.2 16.8 204 190-411 411-644 (906)
53 KOG0735 AAA+-type ATPase [Post 99.7 6.2E-16 1.3E-20 165.0 17.2 192 190-393 408-620 (952)
54 PRK14962 DNA polymerase III su 99.7 8.8E-16 1.9E-20 163.6 17.5 160 185-369 9-198 (472)
55 PF05673 DUF815: Protein of un 99.7 1.6E-15 3.4E-20 146.6 17.6 201 175-391 12-243 (249)
56 PRK04195 replication factor C 99.7 1E-15 2.2E-20 164.3 18.1 177 182-378 6-192 (482)
57 PRK14956 DNA polymerase III su 99.7 1.1E-15 2.4E-20 161.3 16.5 161 185-370 13-203 (484)
58 PRK07003 DNA polymerase III su 99.7 1.6E-15 3.4E-20 165.9 17.9 161 185-370 11-201 (830)
59 PRK12323 DNA polymerase III su 99.7 8.2E-16 1.8E-20 166.1 14.9 181 185-391 11-227 (700)
60 PRK14961 DNA polymerase III su 99.7 2.5E-15 5.3E-20 155.8 17.6 181 185-391 11-222 (363)
61 PRK06893 DNA replication initi 99.7 1.3E-15 2.8E-20 148.1 14.4 173 181-372 7-186 (229)
62 COG2256 MGS1 ATPase related to 99.7 2.6E-15 5.6E-20 152.5 16.6 150 185-360 19-176 (436)
63 KOG0736 Peroxisome assembly fa 99.6 1.3E-15 2.9E-20 163.8 14.8 168 221-393 428-609 (953)
64 PRK14960 DNA polymerase III su 99.6 2.3E-15 5.1E-20 163.0 16.5 180 185-390 10-220 (702)
65 PHA02544 44 clamp loader, smal 99.6 5.2E-15 1.1E-19 150.0 18.2 154 182-360 13-173 (316)
66 PLN03025 replication factor C 99.6 3.6E-15 7.9E-20 151.9 14.8 162 182-369 5-180 (319)
67 PRK06645 DNA polymerase III su 99.6 7.5E-15 1.6E-19 157.3 17.8 181 184-390 15-230 (507)
68 PRK14964 DNA polymerase III su 99.6 6.1E-15 1.3E-19 157.0 16.8 180 185-390 8-218 (491)
69 PRK14958 DNA polymerase III su 99.6 6.1E-15 1.3E-19 158.6 15.6 160 185-369 11-200 (509)
70 TIGR02397 dnaX_nterm DNA polym 99.6 1.4E-14 3E-19 149.0 17.2 180 185-390 9-219 (355)
71 PRK10787 DNA-binding ATP-depen 99.6 1.2E-14 2.6E-19 163.3 17.5 234 191-463 323-585 (784)
72 PRK05563 DNA polymerase III su 99.6 1.7E-14 3.6E-19 157.1 18.0 180 185-390 11-221 (559)
73 TIGR02639 ClpA ATP-dependent C 99.6 2.6E-15 5.6E-20 168.7 11.6 155 185-361 177-359 (731)
74 PRK14963 DNA polymerase III su 99.6 2.4E-14 5.3E-19 153.7 18.3 160 185-369 9-197 (504)
75 PRK08691 DNA polymerase III su 99.6 1.1E-14 2.4E-19 158.9 15.7 180 185-390 11-221 (709)
76 PRK14949 DNA polymerase III su 99.6 1.7E-14 3.7E-19 160.4 17.3 180 185-390 11-221 (944)
77 PRK13342 recombination factor 99.6 1.4E-14 3.1E-19 152.6 15.9 150 184-362 6-166 (413)
78 PRK07994 DNA polymerase III su 99.6 2E-14 4.3E-19 157.3 17.5 160 185-369 11-200 (647)
79 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.2E-14 2.7E-19 139.9 14.0 186 182-390 7-202 (226)
80 PRK14952 DNA polymerase III su 99.6 3.4E-14 7.5E-19 154.4 17.7 162 185-371 8-201 (584)
81 TIGR00362 DnaA chromosomal rep 99.6 1.4E-14 3.1E-19 152.2 14.2 193 182-392 102-313 (405)
82 PRK05896 DNA polymerase III su 99.6 3E-14 6.4E-19 154.1 16.2 180 185-390 11-221 (605)
83 PRK14951 DNA polymerase III su 99.6 3.9E-14 8.4E-19 154.6 17.2 180 185-390 11-226 (618)
84 PRK14970 DNA polymerase III su 99.6 6.8E-14 1.5E-18 145.1 18.2 167 185-376 12-197 (367)
85 PRK14969 DNA polymerase III su 99.6 2.5E-14 5.5E-19 154.7 15.5 180 185-390 11-221 (527)
86 PRK07133 DNA polymerase III su 99.6 4.3E-14 9.4E-19 155.6 17.5 180 185-390 13-220 (725)
87 COG0464 SpoVK ATPases of the A 99.6 4.7E-14 1E-18 151.9 17.5 179 210-393 4-196 (494)
88 PRK07940 DNA polymerase III su 99.6 4.3E-14 9.3E-19 147.5 16.6 178 188-385 3-210 (394)
89 PRK07764 DNA polymerase III su 99.6 4.2E-14 9E-19 159.1 17.6 162 184-370 9-202 (824)
90 PRK14957 DNA polymerase III su 99.6 5.3E-14 1.1E-18 151.7 17.7 161 185-370 11-201 (546)
91 PRK08727 hypothetical protein; 99.6 3.8E-14 8.3E-19 138.1 14.9 173 181-377 10-193 (233)
92 PRK00149 dnaA chromosomal repl 99.6 1.6E-14 3.4E-19 153.9 13.2 193 181-391 113-324 (450)
93 PRK08903 DnaA regulatory inact 99.6 5E-14 1.1E-18 136.3 15.1 162 181-368 9-178 (227)
94 PRK14953 DNA polymerase III su 99.6 8E-14 1.7E-18 149.3 17.4 180 185-390 11-221 (486)
95 TIGR02902 spore_lonB ATP-depen 99.6 3.5E-14 7.5E-19 153.9 14.7 188 184-394 59-309 (531)
96 PRK08084 DNA replication initi 99.6 4.2E-14 9.1E-19 138.0 13.8 168 183-371 15-191 (235)
97 PRK12402 replication factor C 99.6 1.1E-13 2.3E-18 141.2 17.4 162 183-370 8-207 (337)
98 PRK14959 DNA polymerase III su 99.5 8.2E-14 1.8E-18 151.4 16.6 162 185-371 11-202 (624)
99 PRK11034 clpA ATP-dependent Cl 99.5 1.9E-14 4.1E-19 160.8 11.9 155 188-361 184-363 (758)
100 PRK14965 DNA polymerase III su 99.5 7E-14 1.5E-18 152.8 16.0 161 185-370 11-201 (576)
101 KOG0989 Replication factor C, 99.5 2.8E-14 6.1E-19 140.4 11.4 164 182-371 28-212 (346)
102 PRK06305 DNA polymerase III su 99.5 1.5E-13 3.2E-18 146.2 17.6 169 185-378 12-212 (451)
103 PRK06647 DNA polymerase III su 99.5 1.5E-13 3.4E-18 149.3 17.4 180 185-390 11-221 (563)
104 PRK08451 DNA polymerase III su 99.5 2.1E-13 4.6E-18 146.5 18.1 180 185-390 9-219 (535)
105 PRK14955 DNA polymerase III su 99.5 7.8E-14 1.7E-18 146.3 14.4 178 185-388 11-227 (397)
106 PRK14086 dnaA chromosomal repl 99.5 4.6E-14 9.9E-19 152.8 12.6 158 225-392 315-491 (617)
107 PRK05642 DNA replication initi 99.5 1.3E-13 2.8E-18 134.6 14.7 173 181-371 10-190 (234)
108 PRK05342 clpX ATP-dependent pr 99.5 1.7E-13 3.7E-18 143.7 16.4 217 188-410 68-376 (412)
109 PF00308 Bac_DnaA: Bacterial d 99.5 5.6E-14 1.2E-18 135.7 11.8 158 225-391 35-210 (219)
110 TIGR02928 orc1/cdc6 family rep 99.5 1.8E-13 3.8E-18 141.4 16.0 159 188-361 13-213 (365)
111 PRK09111 DNA polymerase III su 99.5 2.7E-13 5.8E-18 148.1 17.7 181 184-390 18-234 (598)
112 TIGR03345 VI_ClpV1 type VI sec 99.5 9.8E-14 2.1E-18 157.5 13.7 157 185-361 182-364 (852)
113 PRK10865 protein disaggregatio 99.5 1.2E-13 2.7E-18 157.1 14.5 155 185-361 173-355 (857)
114 PRK14954 DNA polymerase III su 99.5 3.4E-13 7.4E-18 147.6 17.3 169 185-378 11-218 (620)
115 PRK14088 dnaA chromosomal repl 99.5 1.2E-13 2.6E-18 146.5 13.3 191 182-391 97-307 (440)
116 PRK14948 DNA polymerase III su 99.5 5E-13 1.1E-17 146.9 18.0 169 185-378 11-212 (620)
117 PRK14950 DNA polymerase III su 99.5 5.8E-13 1.3E-17 146.1 17.4 180 185-390 11-222 (585)
118 PRK00440 rfc replication facto 99.5 6.7E-13 1.5E-17 134.2 16.4 170 182-377 9-192 (319)
119 TIGR00382 clpX endopeptidase C 99.5 4.7E-13 1E-17 139.9 15.4 214 191-410 78-382 (413)
120 PRK12422 chromosomal replicati 99.5 3.5E-13 7.5E-18 143.0 13.5 145 225-378 142-303 (445)
121 PRK14971 DNA polymerase III su 99.5 1.2E-12 2.5E-17 143.9 17.7 178 185-388 12-221 (614)
122 PRK11034 clpA ATP-dependent Cl 99.5 5.8E-13 1.3E-17 149.0 15.5 160 191-361 459-667 (758)
123 PRK13341 recombination factor 99.5 7.9E-13 1.7E-17 147.2 16.1 152 184-361 22-182 (725)
124 TIGR02640 gas_vesic_GvpN gas v 99.5 8E-13 1.7E-17 131.1 14.5 129 225-361 22-199 (262)
125 PRK06620 hypothetical protein; 99.4 1.8E-12 3.9E-17 124.8 15.3 159 182-371 8-171 (214)
126 PRK00411 cdc6 cell division co 99.4 1.6E-12 3.4E-17 135.8 15.8 164 182-361 22-221 (394)
127 PRK05201 hslU ATP-dependent pr 99.4 2.5E-12 5.4E-17 133.4 16.8 215 191-411 16-405 (443)
128 TIGR00390 hslU ATP-dependent p 99.4 3.5E-12 7.5E-17 132.3 17.5 215 191-411 13-403 (441)
129 TIGR03346 chaperone_ClpB ATP-d 99.4 6.6E-13 1.4E-17 151.5 13.1 158 185-362 168-351 (852)
130 CHL00095 clpC Clp protease ATP 99.4 7E-13 1.5E-17 150.8 12.0 151 187-359 176-353 (821)
131 COG2607 Predicted ATPase (AAA+ 99.4 8.6E-12 1.9E-16 119.3 17.2 178 177-368 47-247 (287)
132 TIGR02639 ClpA ATP-dependent C 99.4 4.1E-12 8.9E-17 142.9 17.1 156 190-361 454-663 (731)
133 PRK14087 dnaA chromosomal repl 99.4 2.2E-12 4.7E-17 137.2 13.9 188 186-392 111-322 (450)
134 COG2812 DnaX DNA polymerase II 99.4 3.3E-12 7.2E-17 136.0 12.8 162 185-371 11-202 (515)
135 PRK09112 DNA polymerase III su 99.4 3.2E-11 6.9E-16 124.3 19.2 181 184-392 17-243 (351)
136 cd00009 AAA The AAA+ (ATPases 99.4 3.9E-12 8.5E-17 111.5 10.7 117 223-346 18-151 (151)
137 TIGR02903 spore_lon_C ATP-depe 99.4 1.5E-11 3.3E-16 135.4 17.1 166 185-371 149-377 (615)
138 PRK07471 DNA polymerase III su 99.4 4.5E-11 9.9E-16 123.8 19.6 152 184-360 13-213 (365)
139 PTZ00112 origin recognition co 99.3 1.4E-11 3E-16 135.9 16.1 166 189-371 754-960 (1164)
140 KOG2028 ATPase related to the 99.3 4.2E-12 9.2E-17 127.4 10.2 148 185-358 133-292 (554)
141 PRK09087 hypothetical protein; 99.3 1.7E-11 3.6E-16 119.1 13.6 132 226-376 46-183 (226)
142 PRK13407 bchI magnesium chelat 99.3 3.3E-11 7.2E-16 123.2 15.0 157 185-361 3-217 (334)
143 PRK05564 DNA polymerase III su 99.3 1.3E-10 2.8E-15 118.1 19.0 148 188-360 2-165 (313)
144 TIGR03346 chaperone_ClpB ATP-d 99.3 4.7E-11 1E-15 136.4 17.3 161 190-361 565-777 (852)
145 PRK10865 protein disaggregatio 99.3 3.7E-11 8E-16 137.0 15.5 174 177-361 542-780 (857)
146 TIGR00678 holB DNA polymerase 99.3 4E-11 8.7E-16 112.7 12.9 124 223-359 13-167 (188)
147 KOG1969 DNA replication checkp 99.3 2.2E-10 4.8E-15 123.6 19.9 179 181-366 262-487 (877)
148 COG0714 MoxR-like ATPases [Gen 99.3 5.1E-11 1.1E-15 122.0 14.4 131 224-361 43-204 (329)
149 PF07728 AAA_5: AAA domain (dy 99.3 4.7E-12 1E-16 112.9 5.5 106 226-338 1-139 (139)
150 TIGR01650 PD_CobS cobaltochela 99.3 1E-11 2.2E-16 125.7 8.3 131 223-360 63-233 (327)
151 PHA02244 ATPase-like protein 99.2 6.5E-11 1.4E-15 121.3 13.5 120 225-351 120-265 (383)
152 CHL00081 chlI Mg-protoporyphyr 99.2 9.5E-11 2.1E-15 120.2 13.8 154 186-360 13-232 (350)
153 COG1474 CDC6 Cdc6-related prot 99.2 1.8E-10 3.9E-15 119.3 15.1 154 190-361 17-204 (366)
154 CHL00095 clpC Clp protease ATP 99.2 1.7E-10 3.7E-15 131.4 16.1 161 190-361 509-733 (821)
155 COG0593 DnaA ATPase involved i 99.2 1.1E-10 2.4E-15 121.2 13.3 191 182-390 79-287 (408)
156 COG0542 clpA ATP-binding subun 99.2 6.7E-11 1.5E-15 130.7 11.0 157 190-361 491-706 (786)
157 PRK07952 DNA replication prote 99.2 8.8E-11 1.9E-15 115.1 10.6 130 182-325 64-205 (244)
158 TIGR02030 BchI-ChlI magnesium 99.2 1.6E-10 3.4E-15 118.4 12.9 153 188-361 2-220 (337)
159 TIGR03345 VI_ClpV1 type VI sec 99.2 8.2E-11 1.8E-15 133.9 11.7 157 190-361 566-781 (852)
160 PRK08116 hypothetical protein; 99.2 1.2E-10 2.6E-15 116.0 10.1 117 224-349 114-251 (268)
161 PRK11608 pspF phage shock prot 99.1 1.8E-09 3.8E-14 110.6 17.7 198 188-411 4-239 (326)
162 TIGR02974 phageshock_pspF psp 99.1 1E-09 2.2E-14 112.5 14.9 194 193-411 2-232 (329)
163 PRK08058 DNA polymerase III su 99.1 1.3E-09 2.7E-14 111.8 15.5 146 188-358 3-180 (329)
164 TIGR01817 nifA Nif-specific re 99.1 1.5E-09 3.2E-14 118.3 17.0 200 186-411 192-427 (534)
165 smart00382 AAA ATPases associa 99.1 2.5E-10 5.5E-15 98.8 8.9 119 224-347 2-147 (148)
166 PRK07399 DNA polymerase III su 99.1 2.6E-09 5.6E-14 108.7 17.3 175 188-391 2-223 (314)
167 PRK11331 5-methylcytosine-spec 99.1 8.3E-10 1.8E-14 115.9 13.5 113 224-346 194-357 (459)
168 PRK05707 DNA polymerase III su 99.1 3.5E-09 7.5E-14 108.4 16.5 124 223-359 21-177 (328)
169 PRK13531 regulatory ATPase Rav 99.1 8E-10 1.7E-14 116.9 12.0 130 223-359 38-193 (498)
170 smart00763 AAA_PrkA PrkA AAA d 99.1 3.7E-09 8E-14 108.3 16.5 64 187-257 47-118 (361)
171 PRK11388 DNA-binding transcrip 99.1 3.1E-09 6.7E-14 118.2 17.2 199 187-411 322-553 (638)
172 COG0470 HolB ATPase involved i 99.1 1.1E-09 2.4E-14 110.7 12.4 141 191-355 2-176 (325)
173 PF07724 AAA_2: AAA domain (Cd 99.1 2.8E-10 6E-15 105.9 7.2 104 223-326 2-131 (171)
174 TIGR00602 rad24 checkpoint pro 99.1 1.8E-09 4E-14 118.5 14.4 169 177-363 73-290 (637)
175 PRK08181 transposase; Validate 99.1 5.5E-10 1.2E-14 111.1 9.3 94 224-325 106-209 (269)
176 PRK12377 putative replication 99.0 7.8E-10 1.7E-14 108.7 9.5 95 224-325 101-206 (248)
177 PF07726 AAA_3: ATPase family 99.0 1.7E-10 3.7E-15 101.3 3.6 106 226-338 1-129 (131)
178 PRK10820 DNA-binding transcrip 99.0 4.9E-09 1.1E-13 113.8 15.3 202 185-411 199-436 (520)
179 PRK15429 formate hydrogenlyase 99.0 3.6E-09 7.8E-14 118.6 14.4 199 187-411 373-608 (686)
180 TIGR02329 propionate_PrpR prop 99.0 3.8E-09 8.2E-14 114.3 14.0 199 185-411 207-449 (526)
181 COG3829 RocR Transcriptional r 99.0 3E-09 6.6E-14 112.4 12.7 202 183-410 238-477 (560)
182 PRK05022 anaerobic nitric oxid 99.0 5.1E-09 1.1E-13 113.4 14.7 199 188-411 185-419 (509)
183 TIGR02442 Cob-chelat-sub cobal 99.0 2.1E-09 4.6E-14 119.2 11.9 153 188-360 2-214 (633)
184 COG1219 ClpX ATP-dependent pro 99.0 4.3E-09 9.3E-14 104.5 12.4 119 191-309 62-205 (408)
185 PRK08939 primosomal protein Dn 99.0 1.2E-09 2.6E-14 110.7 8.5 128 186-325 123-261 (306)
186 PRK15424 propionate catabolism 99.0 6.3E-09 1.4E-13 112.7 13.9 199 187-410 216-463 (538)
187 PRK04132 replication factor C 98.9 8.3E-09 1.8E-13 116.2 14.6 128 227-367 567-709 (846)
188 KOG0991 Replication factor C, 98.9 2.7E-09 5.8E-14 101.9 8.7 185 180-404 17-215 (333)
189 PF13177 DNA_pol3_delta2: DNA 98.9 1.4E-08 2.9E-13 93.7 13.0 112 223-347 18-161 (162)
190 PF06068 TIP49: TIP49 C-termin 98.9 1.2E-08 2.6E-13 104.0 13.7 66 188-261 22-89 (398)
191 PF01695 IstB_IS21: IstB-like 98.9 6.5E-10 1.4E-14 104.1 3.6 94 224-325 47-150 (178)
192 PRK06835 DNA replication prote 98.9 3.2E-09 7E-14 108.5 9.0 115 225-348 184-318 (329)
193 PF12775 AAA_7: P-loop contain 98.9 3.8E-09 8.2E-14 105.4 9.2 135 224-361 33-194 (272)
194 smart00350 MCM minichromosome 98.9 6.6E-09 1.4E-13 112.5 11.8 160 191-361 204-401 (509)
195 PF01078 Mg_chelatase: Magnesi 98.9 4.9E-09 1.1E-13 99.6 8.9 46 188-248 1-46 (206)
196 PRK06526 transposase; Provisio 98.9 1.1E-09 2.5E-14 108.1 4.0 94 224-325 98-201 (254)
197 COG1224 TIP49 DNA helicase TIP 98.9 6.7E-08 1.4E-12 97.5 16.2 66 189-262 38-105 (450)
198 PF00158 Sigma54_activat: Sigm 98.9 1.6E-08 3.4E-13 93.9 10.9 98 192-305 1-118 (168)
199 KOG0741 AAA+-type ATPase [Post 98.9 3.4E-08 7.3E-13 103.7 14.0 129 224-357 538-683 (744)
200 PRK06964 DNA polymerase III su 98.9 2.5E-08 5.5E-13 102.3 13.0 125 222-359 19-203 (342)
201 COG1221 PspF Transcriptional r 98.8 1.5E-08 3.2E-13 105.2 10.8 204 185-412 73-309 (403)
202 COG1484 DnaC DNA replication p 98.8 2E-08 4.4E-13 99.2 11.4 124 186-325 75-209 (254)
203 PRK08769 DNA polymerase III su 98.8 1E-07 2.2E-12 97.1 16.4 123 223-358 25-183 (319)
204 PRK06921 hypothetical protein; 98.8 9E-09 1.9E-13 102.4 8.5 107 224-334 117-238 (266)
205 PRK10923 glnG nitrogen regulat 98.8 4.6E-08 9.9E-13 104.7 14.3 199 188-411 136-370 (469)
206 COG0542 clpA ATP-binding subun 98.8 3.1E-08 6.7E-13 109.9 12.1 152 187-359 167-345 (786)
207 PRK07993 DNA polymerase III su 98.8 7.5E-08 1.6E-12 98.8 14.0 123 223-358 23-178 (334)
208 PRK06871 DNA polymerase III su 98.7 2.2E-07 4.7E-12 94.9 15.7 124 223-359 23-178 (325)
209 COG1220 HslU ATP-dependent pro 98.7 1.2E-07 2.6E-12 95.0 13.2 70 191-260 16-86 (444)
210 TIGR02031 BchD-ChlD magnesium 98.7 3.9E-08 8.5E-13 108.1 10.4 128 225-360 17-174 (589)
211 TIGR02915 PEP_resp_reg putativ 98.7 9.1E-08 2E-12 101.7 12.7 197 188-411 137-371 (445)
212 COG2204 AtoC Response regulato 98.7 8.9E-08 1.9E-12 101.2 12.2 201 187-413 138-375 (464)
213 KOG0745 Putative ATP-dependent 98.7 2.5E-08 5.4E-13 102.6 7.5 123 224-348 226-387 (564)
214 PF14532 Sigma54_activ_2: Sigm 98.7 1.8E-08 3.8E-13 90.2 5.7 126 194-346 2-137 (138)
215 TIGR00368 Mg chelatase-related 98.7 7.4E-08 1.6E-12 103.7 11.4 144 186-351 188-395 (499)
216 PRK09183 transposase/IS protei 98.7 1.7E-08 3.7E-13 100.0 5.8 94 224-325 102-206 (259)
217 PRK08699 DNA polymerase III su 98.7 7.4E-08 1.6E-12 98.5 10.2 124 222-358 19-183 (325)
218 TIGR03015 pepcterm_ATPase puta 98.7 1.2E-06 2.7E-11 86.4 18.6 156 226-392 45-241 (269)
219 PRK06090 DNA polymerase III su 98.7 2.7E-07 5.8E-12 94.0 14.0 123 223-358 24-178 (319)
220 PF13173 AAA_14: AAA domain 98.7 9.8E-08 2.1E-12 84.2 9.0 114 225-352 3-127 (128)
221 PF03215 Rad17: Rad17 cell cyc 98.7 1.3E-07 2.8E-12 102.2 11.5 168 177-361 8-227 (519)
222 TIGR01818 ntrC nitrogen regula 98.7 2.4E-07 5.2E-12 98.9 13.4 198 190-412 134-367 (463)
223 PF01637 Arch_ATPase: Archaeal 98.7 2.2E-07 4.8E-12 88.6 11.7 156 224-387 20-232 (234)
224 PRK11361 acetoacetate metaboli 98.6 3.2E-07 6.8E-12 97.8 13.5 197 189-411 142-375 (457)
225 PF00910 RNA_helicase: RNA hel 98.6 3.3E-08 7.1E-13 84.7 4.3 97 227-324 1-107 (107)
226 PRK15115 response regulator Gl 98.6 4.4E-07 9.5E-12 96.4 12.6 173 224-411 157-366 (444)
227 KOG1942 DNA helicase, TBP-inte 98.5 1.6E-06 3.6E-11 85.5 14.2 64 189-260 37-102 (456)
228 KOG0990 Replication factor C, 98.5 2.4E-07 5.2E-12 92.4 8.4 159 181-365 32-208 (360)
229 PF05621 TniB: Bacterial TniB 98.5 5.9E-07 1.3E-11 89.9 10.8 191 194-398 38-270 (302)
230 COG1239 ChlI Mg-chelatase subu 98.5 6E-07 1.3E-11 92.9 10.7 155 187-362 14-234 (423)
231 PRK10365 transcriptional regul 98.5 1.3E-06 2.9E-11 92.4 12.9 194 191-411 140-371 (441)
232 PRK09862 putative ATP-dependen 98.5 3.8E-07 8.2E-12 98.1 8.6 142 187-350 188-391 (506)
233 KOG1514 Origin recognition com 98.4 1.8E-06 3.9E-11 93.7 12.8 129 226-363 424-592 (767)
234 KOG1051 Chaperone HSP104 and r 98.4 9.1E-07 2E-11 99.6 10.7 124 190-324 562-710 (898)
235 KOG2035 Replication factor C, 98.4 1.5E-06 3.3E-11 85.2 10.7 168 184-377 7-217 (351)
236 PTZ00111 DNA replication licen 98.4 7.8E-07 1.7E-11 100.3 9.4 160 191-360 451-657 (915)
237 TIGR00764 lon_rel lon-related 98.4 9.4E-06 2E-10 89.7 17.6 51 186-251 14-64 (608)
238 PF05729 NACHT: NACHT domain 98.4 1.9E-06 4E-11 77.9 10.0 130 225-361 1-164 (166)
239 PRK07132 DNA polymerase III su 98.4 2.3E-05 5E-10 79.3 18.5 123 223-358 17-160 (299)
240 PF13401 AAA_22: AAA domain; P 98.4 9.2E-07 2E-11 77.4 7.3 65 224-288 4-100 (131)
241 PF12774 AAA_6: Hydrolytic ATP 98.3 3.1E-06 6.7E-11 82.5 10.9 129 223-356 31-176 (231)
242 COG0606 Predicted ATPase with 98.3 5.7E-07 1.2E-11 94.3 5.8 48 186-248 175-222 (490)
243 COG3604 FhlA Transcriptional r 98.3 2.4E-06 5.2E-11 89.9 10.3 201 186-412 219-456 (550)
244 PHA00729 NTP-binding motif con 98.3 7E-07 1.5E-11 86.3 5.6 104 226-336 19-140 (226)
245 PHA02624 large T antigen; Prov 98.3 2.3E-06 5E-11 92.6 10.1 119 220-346 427-561 (647)
246 PF03969 AFG1_ATPase: AFG1-lik 98.3 5.1E-07 1.1E-11 93.5 4.9 99 221-328 59-172 (362)
247 PLN03210 Resistant to P. syrin 98.3 2.2E-05 4.8E-10 93.2 17.8 156 180-363 174-367 (1153)
248 KOG2227 Pre-initiation complex 98.3 2.5E-05 5.5E-10 81.6 15.7 185 189-390 149-369 (529)
249 KOG1968 Replication factor C, 98.2 3.5E-06 7.6E-11 95.5 9.8 194 184-392 314-531 (871)
250 PRK05917 DNA polymerase III su 98.2 1.3E-05 2.9E-10 80.4 12.5 112 223-347 18-154 (290)
251 KOG1970 Checkpoint RAD17-RFC c 98.2 2.7E-05 5.9E-10 82.8 15.1 175 176-364 70-284 (634)
252 PF00931 NB-ARC: NB-ARC domain 98.2 3.7E-05 7.9E-10 76.5 15.6 150 223-389 18-202 (287)
253 cd01120 RecA-like_NTPases RecA 98.2 5.2E-06 1.1E-10 74.4 8.5 63 227-289 2-99 (165)
254 PRK07276 DNA polymerase III su 98.2 6.4E-05 1.4E-09 75.6 15.9 145 223-390 23-198 (290)
255 PF05707 Zot: Zonular occluden 98.1 5.1E-06 1.1E-10 78.7 7.2 113 227-347 3-146 (193)
256 KOG0478 DNA replication licens 98.1 6E-06 1.3E-10 89.3 6.7 158 191-358 430-624 (804)
257 PHA02774 E1; Provisional 98.0 2.8E-05 6.1E-10 84.0 11.3 58 220-284 430-488 (613)
258 PRK05818 DNA polymerase III su 98.0 4.4E-05 9.4E-10 75.3 11.3 112 223-347 6-147 (261)
259 TIGR02237 recomb_radB DNA repa 98.0 2.1E-05 4.5E-10 75.0 8.6 40 220-259 8-50 (209)
260 PF13207 AAA_17: AAA domain; P 97.9 8.8E-06 1.9E-10 70.3 3.6 31 227-257 2-32 (121)
261 PRK13406 bchD magnesium chelat 97.9 3.8E-05 8.2E-10 84.4 9.2 119 225-351 26-173 (584)
262 PRK15455 PrkA family serine pr 97.9 1.8E-05 3.8E-10 85.6 6.4 66 185-257 71-137 (644)
263 PRK14722 flhF flagellar biosyn 97.9 3.7E-05 8E-10 79.9 8.3 103 224-333 137-267 (374)
264 KOG2680 DNA helicase TIP49, TB 97.8 0.00017 3.7E-09 71.8 11.8 56 316-374 318-385 (454)
265 cd01124 KaiC KaiC is a circadi 97.8 6.9E-05 1.5E-09 69.6 8.8 31 227-257 2-35 (187)
266 PF00493 MCM: MCM2/3/5 family 97.8 1E-05 2.2E-10 83.2 3.3 164 191-363 25-224 (331)
267 KOG0480 DNA replication licens 97.8 2.9E-05 6.2E-10 83.7 6.6 190 189-394 344-571 (764)
268 PRK00131 aroK shikimate kinase 97.8 2E-05 4.4E-10 72.1 4.4 34 223-256 3-36 (175)
269 PRK12723 flagellar biosynthesi 97.8 0.00013 2.7E-09 76.5 10.4 129 196-332 148-306 (388)
270 COG5245 DYN1 Dynein, heavy cha 97.8 0.0001 2.2E-09 85.5 10.0 138 221-361 1491-1659(3164)
271 cd01394 radB RadB. The archaea 97.7 0.00014 3.1E-09 69.7 9.3 39 220-258 15-56 (218)
272 COG1373 Predicted ATPase (AAA+ 97.7 0.00038 8.2E-09 73.4 13.1 130 220-363 34-183 (398)
273 PRK07261 topology modulation p 97.7 5.8E-05 1.3E-09 70.1 6.1 100 227-361 3-102 (171)
274 PRK08118 topology modulation p 97.7 8.6E-05 1.9E-09 68.7 6.5 100 226-361 3-102 (167)
275 PRK08533 flagellar accessory p 97.7 0.00016 3.5E-09 70.5 8.7 102 220-325 20-163 (230)
276 COG3283 TyrR Transcriptional r 97.7 0.0027 5.9E-08 64.8 17.2 207 177-409 191-429 (511)
277 COG1485 Predicted ATPase [Gene 97.7 5E-05 1.1E-09 77.2 4.8 98 222-328 63-175 (367)
278 TIGR02012 tigrfam_recA protein 97.6 0.00011 2.3E-09 75.0 7.2 101 220-323 51-190 (321)
279 PRK06067 flagellar accessory p 97.6 0.00017 3.7E-09 70.1 8.2 38 220-257 21-61 (234)
280 COG1116 TauB ABC-type nitrate/ 97.6 0.00024 5.1E-09 69.3 8.8 23 226-248 31-53 (248)
281 PF06309 Torsin: Torsin; Inte 97.6 9.5E-05 2.1E-09 65.0 5.4 53 190-248 25-77 (127)
282 TIGR01618 phage_P_loop phage n 97.6 6.1E-05 1.3E-09 72.8 4.5 23 224-246 12-34 (220)
283 COG1241 MCM2 Predicted ATPase 97.6 5.1E-05 1.1E-09 83.9 4.1 161 190-360 286-483 (682)
284 COG3267 ExeA Type II secretory 97.6 0.0012 2.5E-08 64.7 13.0 157 227-395 54-251 (269)
285 PF13671 AAA_33: AAA domain; P 97.6 4.2E-05 9.1E-10 67.9 2.8 28 227-254 2-29 (143)
286 PRK13947 shikimate kinase; Pro 97.6 6.9E-05 1.5E-09 68.9 4.0 31 226-256 3-33 (171)
287 cd00464 SK Shikimate kinase (S 97.5 6.6E-05 1.4E-09 67.5 3.7 31 226-256 1-31 (154)
288 PRK09361 radB DNA repair and r 97.5 0.00017 3.6E-09 69.7 6.7 39 220-258 19-60 (225)
289 COG5271 MDN1 AAA ATPase contai 97.5 0.00031 6.6E-09 82.3 9.5 127 224-360 1543-1703(4600)
290 cd01393 recA_like RecA is a b 97.5 0.00026 5.7E-09 68.1 7.9 40 220-259 15-63 (226)
291 PRK03839 putative kinase; Prov 97.5 6.9E-05 1.5E-09 69.7 3.6 30 227-256 3-32 (180)
292 KOG2170 ATPase of the AAA+ sup 97.5 0.00028 6E-09 70.4 7.6 121 191-326 83-226 (344)
293 PRK05973 replicative DNA helic 97.5 0.00057 1.2E-08 66.9 9.7 38 220-257 60-100 (237)
294 cd00983 recA RecA is a bacter 97.5 0.00024 5.3E-09 72.5 7.1 70 220-289 51-147 (325)
295 PF10443 RNA12: RNA12 protein; 97.5 0.0033 7.2E-08 66.0 15.4 126 276-409 149-300 (431)
296 cd03283 ABC_MutS-like MutS-lik 97.5 0.00042 9.1E-09 66.0 8.2 98 224-328 25-151 (199)
297 COG1618 Predicted nucleotide k 97.5 0.00047 1E-08 63.1 7.9 24 225-248 6-29 (179)
298 PRK00625 shikimate kinase; Pro 97.5 0.0001 2.2E-09 68.8 3.8 31 226-256 2-32 (173)
299 PRK13949 shikimate kinase; Pro 97.5 0.0001 2.2E-09 68.4 3.8 31 226-256 3-33 (169)
300 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00027 5.8E-09 68.1 6.7 104 225-332 30-161 (213)
301 TIGR03499 FlhF flagellar biosy 97.5 0.00063 1.4E-08 68.3 9.7 37 224-260 194-235 (282)
302 PRK05800 cobU adenosylcobinami 97.4 0.00031 6.8E-09 65.3 6.9 63 226-288 3-89 (170)
303 KOG2228 Origin recognition com 97.4 0.00081 1.8E-08 68.1 10.0 154 191-361 25-220 (408)
304 PRK13765 ATP-dependent proteas 97.4 0.00029 6.4E-09 78.1 7.5 51 185-250 26-76 (637)
305 PF00437 T2SE: Type II/IV secr 97.4 0.0004 8.7E-09 68.9 7.6 91 185-286 99-208 (270)
306 PF14516 AAA_35: AAA-like doma 97.4 0.0045 9.9E-08 63.6 15.6 161 224-391 31-241 (331)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00042 9.2E-09 67.0 7.6 40 220-259 15-63 (235)
308 TIGR02858 spore_III_AA stage I 97.4 0.00042 9.1E-09 69.2 7.6 26 225-250 112-137 (270)
309 PRK11823 DNA repair protein Ra 97.4 0.00033 7.2E-09 74.8 7.3 70 220-289 76-170 (446)
310 COG0703 AroK Shikimate kinase 97.4 0.00012 2.6E-09 67.9 3.3 32 225-256 3-34 (172)
311 PF05272 VirE: Virulence-assoc 97.4 0.00031 6.6E-09 67.0 6.2 114 220-346 48-169 (198)
312 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00043 9.3E-09 62.9 6.9 98 224-329 25-144 (157)
313 cd02021 GntK Gluconate kinase 97.4 0.00016 3.5E-09 65.0 3.9 28 227-254 2-29 (150)
314 cd00544 CobU Adenosylcobinamid 97.4 0.00059 1.3E-08 63.4 7.6 62 227-288 2-86 (169)
315 PRK14532 adenylate kinase; Pro 97.4 0.00017 3.6E-09 67.6 4.0 30 226-255 2-31 (188)
316 TIGR02688 conserved hypothetic 97.4 0.0025 5.5E-08 67.0 13.0 76 224-304 209-288 (449)
317 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00016 3.5E-09 67.2 3.8 28 227-254 2-29 (183)
318 PRK13948 shikimate kinase; Pro 97.3 0.00022 4.8E-09 67.1 4.5 34 223-256 9-42 (182)
319 TIGR02525 plasmid_TraJ plasmid 97.3 0.00074 1.6E-08 70.4 8.8 94 225-334 150-268 (372)
320 PRK14531 adenylate kinase; Pro 97.3 0.0002 4.4E-09 67.0 4.1 31 225-255 3-33 (183)
321 PRK06217 hypothetical protein; 97.3 0.00019 4.2E-09 67.1 4.0 31 226-256 3-33 (183)
322 TIGR01313 therm_gnt_kin carboh 97.3 0.00018 3.8E-09 65.8 3.5 33 227-261 1-33 (163)
323 PRK00771 signal recognition pa 97.3 0.0014 3E-08 69.7 10.6 62 197-259 69-133 (437)
324 cd01121 Sms Sms (bacterial rad 97.3 0.00058 1.3E-08 71.3 7.6 70 220-289 78-172 (372)
325 cd02020 CMPK Cytidine monophos 97.3 0.00019 4.2E-09 63.7 3.6 30 227-256 2-31 (147)
326 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00096 2.1E-08 66.4 8.8 86 186-285 56-159 (264)
327 PF06745 KaiC: KaiC; InterPro 97.3 0.00079 1.7E-08 65.0 8.0 38 220-257 15-56 (226)
328 PF13604 AAA_30: AAA domain; P 97.3 0.0013 2.7E-08 62.6 9.1 63 225-287 19-105 (196)
329 PF07693 KAP_NTPase: KAP famil 97.3 0.0039 8.5E-08 63.2 13.3 77 275-361 172-264 (325)
330 PRK04841 transcriptional regul 97.3 0.0063 1.4E-07 70.3 16.4 33 224-257 32-64 (903)
331 cd01428 ADK Adenylate kinase ( 97.3 0.00023 5E-09 66.6 3.8 29 227-255 2-30 (194)
332 KOG3347 Predicted nucleotide k 97.2 0.00022 4.8E-09 64.3 3.1 42 225-268 8-49 (176)
333 PRK05057 aroK shikimate kinase 97.2 0.0003 6.6E-09 65.4 4.2 34 224-257 4-37 (172)
334 PRK13946 shikimate kinase; Pro 97.2 0.00026 5.6E-09 66.4 3.7 34 224-257 10-43 (184)
335 PRK05703 flhF flagellar biosyn 97.2 0.0033 7.2E-08 66.8 12.4 63 224-286 221-310 (424)
336 PRK08154 anaerobic benzoate ca 97.2 0.00065 1.4E-08 69.2 6.7 57 195-256 109-165 (309)
337 TIGR02782 TrbB_P P-type conjug 97.2 0.0015 3.2E-08 66.3 8.9 25 224-248 132-156 (299)
338 PRK03731 aroL shikimate kinase 97.2 0.00034 7.5E-09 64.4 4.0 31 226-256 4-34 (171)
339 PRK06762 hypothetical protein; 97.2 0.00041 8.9E-09 63.5 4.5 33 224-256 2-34 (166)
340 PRK08233 hypothetical protein; 97.2 0.0011 2.4E-08 61.2 7.4 32 226-257 5-37 (182)
341 COG4650 RtcR Sigma54-dependent 97.2 0.00085 1.8E-08 66.7 6.7 67 223-289 207-296 (531)
342 PRK13764 ATPase; Provisional 97.2 0.0012 2.6E-08 72.6 8.6 26 224-249 257-282 (602)
343 cd03216 ABC_Carb_Monos_I This 97.2 0.001 2.3E-08 61.1 7.0 98 223-328 25-145 (163)
344 PF13191 AAA_16: AAA ATPase do 97.2 0.00019 4E-09 66.3 1.9 59 192-260 2-63 (185)
345 PRK14530 adenylate kinase; Pro 97.2 0.00038 8.3E-09 66.8 4.2 30 226-255 5-34 (215)
346 cd00227 CPT Chloramphenicol (C 97.2 0.00031 6.7E-09 65.2 3.3 33 225-257 3-35 (175)
347 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0012 2.7E-08 61.7 7.2 65 224-288 25-102 (177)
348 TIGR01613 primase_Cterm phage/ 97.1 0.0018 3.9E-08 65.7 8.9 137 190-345 48-202 (304)
349 PRK09354 recA recombinase A; P 97.1 0.001 2.2E-08 68.6 7.1 70 220-289 56-152 (349)
350 COG4619 ABC-type uncharacteriz 97.1 0.0015 3.2E-08 60.4 7.1 24 225-248 30-53 (223)
351 COG1102 Cmk Cytidylate kinase 97.1 0.00039 8.5E-09 63.5 3.4 29 227-255 3-31 (179)
352 PRK06547 hypothetical protein; 97.1 0.00055 1.2E-08 63.8 4.4 34 223-256 14-47 (172)
353 PRK04296 thymidine kinase; Pro 97.1 0.0019 4.1E-08 61.0 8.1 30 226-255 4-36 (190)
354 cd03247 ABCC_cytochrome_bd The 97.1 0.0019 4.1E-08 60.0 8.0 26 223-248 27-52 (178)
355 smart00534 MUTSac ATPase domai 97.1 0.0016 3.4E-08 61.2 7.4 62 227-288 2-91 (185)
356 PRK11889 flhF flagellar biosyn 97.1 0.0034 7.4E-08 65.6 10.4 59 196-258 217-278 (436)
357 cd00046 DEXDc DEAD-like helica 97.1 0.0012 2.7E-08 56.5 6.2 23 226-248 2-24 (144)
358 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00049 1.1E-08 63.9 3.8 30 226-255 5-34 (188)
359 cd03228 ABCC_MRP_Like The MRP 97.1 0.0017 3.8E-08 59.9 7.5 26 223-248 27-52 (171)
360 PRK02496 adk adenylate kinase; 97.0 0.00046 9.9E-09 64.4 3.4 29 227-255 4-32 (184)
361 PF13245 AAA_19: Part of AAA d 97.0 0.00081 1.8E-08 54.0 4.4 33 226-258 12-51 (76)
362 KOG1051 Chaperone HSP104 and r 97.0 0.0044 9.5E-08 70.5 11.6 126 223-357 207-360 (898)
363 KOG2383 Predicted ATPase [Gene 97.0 0.00064 1.4E-08 70.2 4.5 26 223-248 113-138 (467)
364 COG3854 SpoIIIAA ncharacterize 97.0 0.0017 3.7E-08 62.7 7.0 62 226-287 139-230 (308)
365 cd03243 ABC_MutS_homologs The 97.0 0.0023 5E-08 60.8 8.1 64 225-288 30-121 (202)
366 PRK14528 adenylate kinase; Pro 97.0 0.00059 1.3E-08 64.2 3.8 30 226-255 3-32 (186)
367 cd03246 ABCC_Protease_Secretio 97.0 0.002 4.3E-08 59.7 7.3 25 224-248 28-52 (173)
368 PLN02200 adenylate kinase fami 97.0 0.00072 1.6E-08 66.1 4.5 36 223-260 42-77 (234)
369 KOG0477 DNA replication licens 97.0 0.0015 3.3E-08 70.5 7.2 95 191-289 450-560 (854)
370 PTZ00088 adenylate kinase 1; P 97.0 0.00057 1.2E-08 66.7 3.7 31 226-256 8-38 (229)
371 PF06431 Polyoma_lg_T_C: Polyo 97.0 0.0019 4.1E-08 66.2 7.3 120 220-346 151-285 (417)
372 TIGR01351 adk adenylate kinase 97.0 0.00062 1.3E-08 65.1 3.7 29 227-255 2-30 (210)
373 PF09848 DUF2075: Uncharacteri 97.0 0.0017 3.7E-08 67.2 7.2 24 225-248 2-25 (352)
374 cd02019 NK Nucleoside/nucleoti 97.0 0.0011 2.3E-08 52.1 4.3 22 227-248 2-23 (69)
375 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.002 4.4E-08 66.1 7.3 66 188-260 58-125 (358)
376 PRK06696 uridine kinase; Valid 96.9 0.0026 5.6E-08 61.5 7.8 41 224-264 22-65 (223)
377 PRK13695 putative NTPase; Prov 96.9 0.0037 8E-08 57.9 8.5 22 227-248 3-24 (174)
378 COG3284 AcoR Transcriptional a 96.9 0.0031 6.6E-08 68.7 8.9 170 223-411 335-539 (606)
379 PRK10416 signal recognition pa 96.9 0.0054 1.2E-07 62.7 10.4 61 197-258 87-151 (318)
380 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0019 4.1E-08 61.3 6.7 21 225-245 29-49 (200)
381 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.0032 6.9E-08 61.1 8.2 98 224-327 31-156 (222)
382 PRK00279 adk adenylate kinase; 96.9 0.00073 1.6E-08 64.9 3.7 29 227-255 3-31 (215)
383 PF13238 AAA_18: AAA domain; P 96.9 0.00057 1.2E-08 59.0 2.7 22 227-248 1-22 (129)
384 PRK04040 adenylate kinase; Pro 96.9 0.00091 2E-08 63.2 4.1 29 225-253 3-33 (188)
385 COG1936 Predicted nucleotide k 96.9 0.00059 1.3E-08 63.1 2.7 29 227-256 3-31 (180)
386 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0022 4.8E-08 61.9 6.8 22 225-246 31-52 (216)
387 PRK14974 cell division protein 96.9 0.0051 1.1E-07 63.3 9.8 61 198-258 110-177 (336)
388 PRK06581 DNA polymerase III su 96.9 0.016 3.4E-07 56.8 12.5 125 224-361 15-162 (263)
389 PRK04182 cytidylate kinase; Pr 96.9 0.00093 2E-08 61.5 3.8 30 226-255 2-31 (180)
390 COG1855 ATPase (PilT family) [ 96.9 0.00091 2E-08 69.9 4.0 45 187-249 244-288 (604)
391 PF13086 AAA_11: AAA domain; P 96.9 0.00064 1.4E-08 64.7 2.7 22 227-248 20-41 (236)
392 PHA00350 putative assembly pro 96.8 0.0022 4.8E-08 67.2 6.8 107 227-340 4-158 (399)
393 PRK14527 adenylate kinase; Pro 96.8 0.00085 1.9E-08 63.2 3.4 32 224-255 6-37 (191)
394 TIGR01420 pilT_fam pilus retra 96.8 0.0047 1E-07 63.9 9.0 62 224-285 122-205 (343)
395 PRK01184 hypothetical protein; 96.8 0.001 2.2E-08 62.1 3.7 29 226-255 3-31 (184)
396 COG2874 FlaH Predicted ATPases 96.8 0.0034 7.3E-08 60.0 6.9 115 214-334 16-176 (235)
397 PF00406 ADK: Adenylate kinase 96.8 0.0008 1.7E-08 60.8 2.6 26 229-254 1-26 (151)
398 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0012 2.6E-08 60.3 3.8 29 227-255 3-31 (171)
399 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.0024 5.1E-08 61.2 5.9 22 225-246 30-51 (204)
400 PF10236 DAP3: Mitochondrial r 96.8 0.031 6.7E-07 57.0 14.4 86 275-362 156-279 (309)
401 PLN03187 meiotic recombination 96.8 0.004 8.7E-08 64.3 8.0 40 220-259 122-170 (344)
402 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0038 8.2E-08 56.2 6.9 65 223-288 25-101 (144)
403 PHA02530 pseT polynucleotide k 96.8 0.0013 2.8E-08 66.2 4.3 31 225-255 3-34 (300)
404 cd03227 ABC_Class2 ABC-type Cl 96.8 0.0021 4.6E-08 58.9 5.4 96 225-328 22-144 (162)
405 COG2804 PulE Type II secretory 96.8 0.004 8.8E-08 66.4 8.0 83 186-285 234-337 (500)
406 PTZ00035 Rad51 protein; Provis 96.8 0.0046 9.9E-08 63.8 8.3 40 220-259 114-162 (337)
407 PRK13833 conjugal transfer pro 96.8 0.0049 1.1E-07 63.1 8.3 25 224-248 144-168 (323)
408 PF13521 AAA_28: AAA domain; P 96.7 0.0011 2.5E-08 60.5 3.4 26 227-253 2-27 (163)
409 PRK12724 flagellar biosynthesi 96.7 0.0077 1.7E-07 63.6 9.8 63 197-259 195-262 (432)
410 TIGR00416 sms DNA repair prote 96.7 0.0038 8.3E-08 66.9 7.8 70 220-289 90-184 (454)
411 TIGR02533 type_II_gspE general 96.7 0.0078 1.7E-07 65.1 10.1 86 185-285 217-321 (486)
412 COG0563 Adk Adenylate kinase a 96.7 0.0014 2.9E-08 61.5 3.7 31 226-258 2-32 (178)
413 PRK13894 conjugal transfer ATP 96.7 0.0068 1.5E-07 62.0 9.1 25 224-248 148-172 (319)
414 COG2805 PilT Tfp pilus assembl 96.7 0.0035 7.6E-08 62.8 6.6 59 177-255 97-160 (353)
415 PRK14526 adenylate kinase; Pro 96.7 0.0014 3E-08 63.1 3.8 28 227-254 3-30 (211)
416 cd03238 ABC_UvrA The excision 96.7 0.0041 8.9E-08 58.2 6.8 24 223-246 20-43 (176)
417 TIGR00235 udk uridine kinase. 96.7 0.011 2.3E-07 56.4 9.8 25 226-250 8-32 (207)
418 PF00448 SRP54: SRP54-type pro 96.7 0.0051 1.1E-07 58.5 7.5 34 224-257 1-37 (196)
419 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.3E-08 61.3 3.8 29 226-254 4-32 (186)
420 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0019 4.1E-08 57.6 4.2 29 223-251 21-49 (133)
421 KOG0482 DNA replication licens 96.7 0.0048 1E-07 65.5 7.6 166 191-364 343-543 (721)
422 cd02027 APSK Adenosine 5'-phos 96.7 0.0017 3.8E-08 58.8 3.9 30 227-256 2-34 (149)
423 cd01128 rho_factor Transcripti 96.6 0.0057 1.2E-07 60.4 7.7 27 224-250 16-42 (249)
424 PF04665 Pox_A32: Poxvirus A32 96.6 0.016 3.6E-07 56.8 10.7 123 224-359 13-169 (241)
425 smart00487 DEXDc DEAD-like hel 96.6 0.0042 9.1E-08 56.7 6.3 24 225-248 25-49 (201)
426 PF02367 UPF0079: Uncharacteri 96.6 0.0047 1E-07 54.3 6.3 29 223-251 14-42 (123)
427 cd03214 ABC_Iron-Siderophores_ 96.6 0.0035 7.5E-08 58.4 5.7 26 223-248 24-49 (180)
428 PLN02199 shikimate kinase 96.6 0.0034 7.3E-08 63.2 5.9 33 224-256 102-134 (303)
429 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0074 1.6E-07 55.8 7.8 25 224-248 26-50 (173)
430 PRK09376 rho transcription ter 96.6 0.0032 6.8E-08 65.8 5.7 24 226-249 171-194 (416)
431 COG0467 RAD55 RecA-superfamily 96.6 0.0027 5.8E-08 62.8 5.0 40 220-259 19-61 (260)
432 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0023 5.1E-08 63.4 4.5 39 220-258 32-73 (259)
433 PF01745 IPT: Isopentenyl tran 96.6 0.0019 4.2E-08 61.8 3.7 32 226-257 3-34 (233)
434 PRK12727 flagellar biosynthesi 96.6 0.0069 1.5E-07 65.6 8.2 65 223-287 349-440 (559)
435 COG4178 ABC-type uncharacteriz 96.6 0.0032 6.9E-08 68.9 5.6 24 223-246 418-441 (604)
436 PF13479 AAA_24: AAA domain 96.5 0.0045 9.7E-08 59.5 6.1 57 226-287 5-80 (213)
437 COG1136 SalX ABC-type antimicr 96.5 0.0076 1.7E-07 58.5 7.6 23 226-248 33-55 (226)
438 COG1126 GlnQ ABC-type polar am 96.5 0.0085 1.8E-07 57.5 7.7 22 225-246 29-50 (240)
439 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0031 6.7E-08 61.6 4.9 40 220-259 17-59 (237)
440 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0022 4.7E-08 63.0 3.9 31 227-257 2-35 (249)
441 PLN02674 adenylate kinase 96.5 0.0024 5.2E-08 62.8 4.1 31 224-254 31-61 (244)
442 PRK10436 hypothetical protein; 96.5 0.013 2.8E-07 62.9 9.9 94 178-285 185-297 (462)
443 PRK12339 2-phosphoglycerate ki 96.5 0.0028 6.1E-08 60.4 4.3 29 224-252 3-31 (197)
444 PF08433 KTI12: Chromatin asso 96.5 0.0058 1.3E-07 61.1 6.7 62 227-288 4-83 (270)
445 KOG3354 Gluconate kinase [Carb 96.5 0.0022 4.7E-08 58.3 3.2 46 222-269 10-55 (191)
446 PRK05541 adenylylsulfate kinas 96.5 0.0032 6.9E-08 58.3 4.4 26 224-249 7-32 (176)
447 PF09336 Vps4_C: Vps4 C termin 96.5 0.00054 1.2E-08 52.9 -0.8 48 425-478 3-56 (62)
448 PF02456 Adeno_IVa2: Adenoviru 96.4 0.042 9.1E-07 55.3 12.2 20 226-245 89-108 (369)
449 PF02562 PhoH: PhoH-like prote 96.4 0.0065 1.4E-07 58.2 6.4 23 226-248 21-43 (205)
450 TIGR02236 recomb_radA DNA repa 96.4 0.0077 1.7E-07 61.1 7.3 51 220-270 91-150 (310)
451 TIGR02538 type_IV_pilB type IV 96.4 0.014 3E-07 64.4 9.8 94 178-285 283-395 (564)
452 PRK14721 flhF flagellar biosyn 96.4 0.02 4.3E-07 60.7 10.4 24 224-247 191-214 (420)
453 TIGR01425 SRP54_euk signal rec 96.4 0.017 3.7E-07 61.2 10.0 63 197-260 73-139 (429)
454 PF13481 AAA_25: AAA domain; P 96.4 0.004 8.7E-08 58.2 4.7 23 226-248 34-56 (193)
455 cd02022 DPCK Dephospho-coenzym 96.4 0.0034 7.3E-08 58.6 4.0 29 227-256 2-30 (179)
456 PRK00889 adenylylsulfate kinas 96.4 0.0041 8.8E-08 57.5 4.5 34 224-257 4-40 (175)
457 PRK09519 recA DNA recombinatio 96.4 0.0091 2E-07 67.5 8.0 70 220-289 56-152 (790)
458 PF00488 MutS_V: MutS domain V 96.4 0.014 3E-07 57.1 8.4 97 225-327 44-168 (235)
459 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0028 6.1E-08 60.1 3.4 40 222-261 13-53 (199)
460 PRK05480 uridine/cytidine kina 96.3 0.0045 9.8E-08 59.0 4.8 37 224-260 6-43 (209)
461 TIGR02322 phosphon_PhnN phosph 96.3 0.0028 6.1E-08 58.7 3.2 25 226-250 3-27 (179)
462 TIGR00064 ftsY signal recognit 96.3 0.0097 2.1E-07 59.5 7.2 63 197-260 45-111 (272)
463 PRK14529 adenylate kinase; Pro 96.3 0.0026 5.6E-08 61.8 3.0 28 227-254 3-30 (223)
464 PRK09825 idnK D-gluconate kina 96.3 0.0062 1.3E-07 56.9 5.4 36 226-263 5-40 (176)
465 PRK12338 hypothetical protein; 96.3 0.0036 7.8E-08 63.8 4.1 30 224-253 4-33 (319)
466 PF12780 AAA_8: P-loop contain 96.3 0.013 2.9E-07 58.4 8.0 63 223-285 30-99 (268)
467 TIGR00767 rho transcription te 96.3 0.0085 1.8E-07 62.8 6.6 25 225-249 169-193 (415)
468 PRK09302 circadian clock prote 96.3 0.011 2.4E-07 64.2 7.9 38 220-257 27-68 (509)
469 PLN02459 probable adenylate ki 96.3 0.0044 9.5E-08 61.4 4.2 30 226-255 31-60 (261)
470 PRK04301 radA DNA repair and r 96.3 0.01 2.2E-07 60.6 7.1 50 220-269 98-156 (317)
471 PTZ00202 tuzin; Provisional 96.2 0.018 3.8E-07 61.0 8.7 64 185-258 257-320 (550)
472 PRK12726 flagellar biosynthesi 96.2 0.013 2.8E-07 61.2 7.6 40 223-262 205-247 (407)
473 TIGR02788 VirB11 P-type DNA tr 96.2 0.0092 2E-07 60.7 6.6 27 223-249 143-169 (308)
474 PRK04220 2-phosphoglycerate ki 96.2 0.01 2.2E-07 60.0 6.8 29 223-251 91-119 (301)
475 PLN02165 adenylate isopentenyl 96.2 0.0042 9.2E-08 63.6 4.0 34 225-258 44-77 (334)
476 KOG2543 Origin recognition com 96.2 0.033 7.1E-07 57.6 10.3 128 223-359 29-192 (438)
477 PRK04328 hypothetical protein; 96.2 0.0059 1.3E-07 60.2 4.9 40 220-259 19-61 (249)
478 cd02028 UMPK_like Uridine mono 96.2 0.0045 9.6E-08 57.9 3.8 35 227-261 2-39 (179)
479 cd01130 VirB11-like_ATPase Typ 96.2 0.0048 1E-07 57.9 4.1 26 224-249 25-50 (186)
480 PRK14723 flhF flagellar biosyn 96.2 0.025 5.4E-07 63.9 10.2 64 224-287 185-275 (767)
481 cd02024 NRK1 Nicotinamide ribo 96.2 0.0044 9.5E-08 58.6 3.7 30 227-256 2-32 (187)
482 PRK11176 lipid transporter ATP 96.2 0.016 3.4E-07 64.0 8.6 28 221-248 366-393 (582)
483 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.0067 1.5E-07 58.5 5.1 39 220-258 16-57 (229)
484 TIGR03263 guanyl_kin guanylate 96.2 0.0037 8E-08 57.9 3.1 25 226-250 3-27 (180)
485 PRK10646 ADP-binding protein; 96.2 0.021 4.6E-07 52.1 7.9 26 225-250 29-54 (153)
486 cd00984 DnaB_C DnaB helicase C 96.2 0.0069 1.5E-07 58.8 5.1 40 220-259 9-52 (242)
487 PRK12337 2-phosphoglycerate ki 96.2 0.012 2.6E-07 62.7 7.2 34 223-256 254-288 (475)
488 PRK12608 transcription termina 96.2 0.0097 2.1E-07 61.9 6.3 24 226-249 135-158 (380)
489 COG4133 CcmA ABC-type transpor 96.1 0.021 4.6E-07 53.7 7.8 24 225-248 29-52 (209)
490 cd02023 UMPK Uridine monophosp 96.1 0.0062 1.4E-07 57.4 4.5 33 227-259 2-35 (198)
491 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.0085 1.8E-07 62.3 5.9 25 224-248 134-158 (358)
492 TIGR01069 mutS2 MutS2 family p 96.1 0.044 9.6E-07 62.5 12.0 23 225-247 323-345 (771)
493 PF01583 APS_kinase: Adenylyls 96.1 0.0059 1.3E-07 56.0 4.1 33 226-258 4-39 (156)
494 cd03286 ABC_MSH6_euk MutS6 hom 96.1 0.012 2.6E-07 57.0 6.4 63 224-286 30-120 (218)
495 COG1120 FepC ABC-type cobalami 96.1 0.015 3.2E-07 57.6 7.2 23 226-248 30-52 (258)
496 TIGR02655 circ_KaiC circadian 96.1 0.0067 1.4E-07 65.6 5.2 39 220-258 17-59 (484)
497 PLN03186 DNA repair protein RA 96.1 0.014 3E-07 60.3 7.3 40 220-259 119-167 (342)
498 PRK00300 gmk guanylate kinase; 96.1 0.0059 1.3E-07 57.8 4.3 27 223-249 4-30 (205)
499 PF03266 NTPase_1: NTPase; In 96.1 0.0042 9E-08 57.7 3.1 22 227-248 2-23 (168)
500 cd00071 GMPK Guanosine monopho 96.1 0.0054 1.2E-07 54.8 3.7 25 227-251 2-26 (137)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-79 Score=625.53 Aligned_cols=404 Identities=39% Similarity=0.683 Sum_probs=371.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhccceEEEEeecCCCCCcchHHHHHHHHhccccCCccccccccc
Q 011664 6 IVLLVIGCLLFMIRVLLFKTGLIFVAKKWWRFIEDCLHVHQFFKVPEFNEGMQENQLYRKVYAYLNSLTSIEDSDFTNLF 85 (480)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~i~e~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 85 (480)
+.++.++++...+. .++|..++.|+-.+.++|..+|++|+++.++|+.+ +.+||+|.+++.||+++++..+.++ ++.
T Consensus 9 s~~~~~~~~~~~~~-~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g-~~~n~~~~aie~yl~~k~~~~~~rl-~~~ 85 (457)
T KOG0743|consen 9 SLLGSLMFIKSMLQ-DIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG-VFRNQLYVAIEVYLSSKSSAIAKRL-TQN 85 (457)
T ss_pred HHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc-chHHHHHHHHHHhhhccchhhhhhh-hhh
Confidence 56666678888887 89999999999999999999999999999999866 8999999999999999998877765 466
Q ss_pred cCCCCCceEEecCCCCceeecccceeEEEEeccC----------CCCcceEEEEEeccchhhhhhhhHHHHHHHHHHHHH
Q 011664 86 TGKKSNDIVLGLDPNQLIQDNFLGAPLSWANQDD----------SATARTLVLKLRKADRRRILRPYLQHIHAVSDELEQ 155 (480)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~----------~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ 155 (480)
...+++++++.+++|++|.|+|+|++++|.+... ..+.|+|+|+|++++++.|+.+||+|+.+.+++|.+
T Consensus 86 ~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~k~I~~ 165 (457)
T KOG0743|consen 86 LSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKAKEILE 165 (457)
T ss_pred hccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHHHHHHH
Confidence 7788889999999999999999999999988753 456799999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCC--CCCcceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccC
Q 011664 156 KKKRDLRLFVNLRNDRDG--CCGRWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPS 233 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~--~~~~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPp 233 (480)
+ ++++++|++.++..++ .++.|++++++||++|++|++++++|+.|++++..|++++++|++.|++|+|||||||||
T Consensus 166 ~-~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPP 244 (457)
T KOG0743|consen 166 E-NRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPP 244 (457)
T ss_pred H-HHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCC
Confidence 7 9999999998654444 367899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCc-------------ccccchhhh
Q 011664 234 GTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEK-------------PAAVSLSGV 300 (480)
Q Consensus 234 GTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~-------------~~~~~ls~l 300 (480)
|||||++++|||+++++++|.++++++..+++|++++..+.+.|||+|+||||-+.-+ .+.+++|+|
T Consensus 245 GTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL 324 (457)
T KOG0743|consen 245 GTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL 324 (457)
T ss_pred CCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence 9999999999999999999999999999999999999999999999999999986411 133789999
Q ss_pred hhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC-CCCCchhHHHHHHhCC
Q 011664 301 LNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK-DHKLFPQVEEIFQNGS 379 (480)
Q Consensus 301 L~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~-~~~l~~~i~~l~~~~~ 379 (480)
||++||+|+ +|++++|||||||+++.|||||+||||||+||+|++|++++++.++++||+.. +|.++++++.+...+
T Consensus 325 LNfiDGlwS-scg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~- 402 (457)
T KOG0743|consen 325 LNFLDGLWS-SCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET- 402 (457)
T ss_pred hhhhccccc-cCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC-
Confidence 999999999 89999999999999999999999999999999999999999999999999987 499999999976654
Q ss_pred CCCHHHHHHHHHHhhhcHHHHHHHHHHHHHhcCCCC
Q 011664 380 SLSPAEIGELMIANRNSPSRALKSVITALQTDGEGR 415 (480)
Q Consensus 380 g~s~adI~~ll~~a~~~~~~al~~~i~~~~~~~~~~ 415 (480)
.+|||||++.++..+.++..+++.+++.++.+....
T Consensus 403 ~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~ 438 (457)
T KOG0743|consen 403 EVTPAQVAEELMKNKNDADVALKGLVEALESKKEKR 438 (457)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhh
Confidence 999999999998887789999999999999885444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-49 Score=391.95 Aligned_cols=215 Identities=23% Similarity=0.275 Sum_probs=195.1
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...|.+|+++|+|+++++++|+|.++.|+++|+.|..+|+.+|+|+|||||||||||+||+|+|++.++.|+.+..|++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34457799999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C----C--hHHHHHHH--HhhcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 A----D--DADLKSLL--LQTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~----~--~~~l~~l~--~~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
. + ..-++.+| ++.++||||||||||+++..|.+ ++++-+||++|||+.. .+++-||+|||
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~---~~nvKVI~ATN 298 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP---RGNVKVIMATN 298 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC---CCCeEEEEecC
Confidence 5 3 34478888 56679999999999999875532 4678999999999988 67888999999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHH
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPS 398 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~ 398 (480)
+++.|||||+||||||+.|+||+|+.++|.+|++.|....+..-+.+++.|+..++|+|||||+++|..|.+.+.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999988777777788999999999999999999998876554
No 3
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-47 Score=365.12 Aligned_cols=280 Identities=20% Similarity=0.269 Sum_probs=245.9
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc-
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV- 260 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~- 260 (480)
-..|.+.|+||+|++.+|+.|++.+..+++.|++|..-..|| +|+|||||||||||.||+|+|.+.+..|+.|+.|++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 345778999999999999999999999999999999866666 599999999999999999999999999999997765
Q ss_pred ---CChHH--HHHHH--HhhcCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 261 ---ADDAD--LKSLL--LQTTSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 261 ---~~~~~--l~~l~--~~~~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+++++ ++.+| ++.+.|+||||||||++|+.++.+ +...+||.+|.|+..+ .++++|+++||-||.
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d--~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND--NDGVLVLGATNIPWV 281 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC--CCceEEEecCCCchh
Confidence 45544 67777 466799999999999999877544 4578999999999874 678888899999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
||.|++| ||+++|++|+|+..+|..+++.+++...+.+.+ ++.+|+..|+|||++||.-+++.+-+.|+|.++...+
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAth 359 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATH 359 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhh
Confidence 9999999 999999999999999999999999999988875 7899999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccccCCCCCCCCCCC----CCCCCccccCCcHHHHHHhhcccccCcccCCcCcc
Q 011664 407 ALQTDGEGRGAANAGRRLDKSGSKKSTDADS----GEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD 472 (480)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~ 472 (480)
+.+..+.. ........+.+|.++++++-+. .+.+++.+++|||.||.++ ++++||+|+.|
T Consensus 360 Fk~v~~~s-~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~-----l~~tkPTvn~~ 423 (439)
T KOG0739|consen 360 FKKVSGPS-NPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKS-----LSRTKPTVNED 423 (439)
T ss_pred hhccCCCC-ChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHH-----HhhcCCCCCHH
Confidence 98877544 3344677889999999876332 2566789999999999999 99999999954
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-46 Score=389.91 Aligned_cols=247 Identities=26% Similarity=0.341 Sum_probs=216.3
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC----
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS---- 258 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s---- 258 (480)
..++++|+||+|++++|+++++.+.+++++|+.|.++|+.+++|||||||||||||++|+|+|++++.+|+.+...
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred CcCCh--HHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 259 RVADD--ADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 259 ~~~~~--~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
.+.++ ..++.+|.++ .+|||||+||||+++..|+++ +.+++||++|||+.. ..+++||++||+|+.|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~---~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA---LKNVLVIAATNRPDMI 583 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc---cCcEEEEeccCChhhc
Confidence 45554 4599999665 579999999999999887533 558999999999987 5789999999999999
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITAL 408 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~ 408 (480)
|+||+||||||+.|++|+||.++|.+|++.+++..+..-+.++++|++.|+|||||||.++|+.| +..|+++.++
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A---~~~a~~e~i~-- 658 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEA---ALLALRESIE-- 658 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHH---HHHHHHHhcc--
Confidence 99999999999999999999999999999999887776667889999999999999999999865 3445554433
Q ss_pred HhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc-cccccc
Q 011664 409 QTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD-LAAAEN 478 (480)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~-~~~~~~ 478 (480)
...++.+||+++ ++..+||++.. .+.||+
T Consensus 659 ------------------------------------a~~i~~~hf~~a-----l~~~r~s~~~~~~~~Ye~ 688 (693)
T KOG0730|consen 659 ------------------------------------ATEITWQHFEEA-----LKAVRPSLTSELLEKYED 688 (693)
T ss_pred ------------------------------------cccccHHHHHHH-----HHhhcccCCHHHHHHHHH
Confidence 145678999999 99999999954 444443
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=377.13 Aligned_cols=259 Identities=19% Similarity=0.284 Sum_probs=215.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC----C
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS----R 259 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s----~ 259 (480)
-|.++|+||+++++++.++...+..++++|+.|+.+|+..|.|+|||||||||||.||+|+|++.|.+|+.|... .
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999855 4
Q ss_pred cCChHH--HHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 260 VADDAD--LKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 260 ~~~~~~--l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
++++++ ++++|.++ ..||||||||+|++++.|+.. +.+++||..|||+.. ..++.||+|||+|+.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~---R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE---RRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc---ccceEEEeecCCCcccc
Confidence 556555 89999655 689999999999999977643 558999999999987 57899999999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch--hHHHHHHhCC--CCCHHHHHHHHHHhhhcHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP--QVEEIFQNGS--SLSPAEIGELMIANRNSPSRALKSVI 405 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~--~i~~l~~~~~--g~s~adI~~ll~~a~~~~~~al~~~i 405 (480)
||++||||||+.+++++|+.++|..|++...+....++.. ++++|+..+. |||||||..+|+++ ...||+.-+
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA---si~AL~~~~ 738 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA---SILALRESL 738 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH---HHHHHHHHH
Confidence 9999999999999999999999999999999865555554 5689998776 99999999999755 455666555
Q ss_pred HHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC-ccccccc
Q 011664 406 TALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS-FDLAAAE 477 (480)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~-~~~~~~~ 477 (480)
...... .++. ...+..--+|+.||+.| +++++|||+ .|-..|+
T Consensus 739 ~~~~~~----------------------~~~~--~~~~~~~~~t~~hF~eA-----~~~i~pSv~~~dr~~Yd 782 (802)
T KOG0733|consen 739 FEIDSS----------------------EDDV--TVRSSTIIVTYKHFEEA-----FQRIRPSVSERDRKKYD 782 (802)
T ss_pred hhcccc----------------------Cccc--ceeeeeeeecHHHHHHH-----HHhcCCCccHHHHHHHH
Confidence 422111 0011 00011123789999999 999999999 4544444
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-44 Score=359.53 Aligned_cols=262 Identities=23% Similarity=0.287 Sum_probs=212.4
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC---
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR--- 259 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~--- 259 (480)
-++.+.|+||+|++++|+-|+|++..++.-|++|+.+..||+ |+|++||||||||+||+|+|.+++..|+.|+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 345689999999999999999999999999999999988886 9999999999999999999999999999999765
Q ss_pred -cCChHH--HHHHH--HhhcCCcEEEEecccccccCcccc-------cchhhhhhhcccccccccCCceE-EEEecCCCc
Q 011664 260 -VADDAD--LKSLL--LQTTSKSVILIEDLDRFLVEKPAA-------VSLSGVLNFMDGVLNSCCFEERV-MVFTMNSKD 326 (480)
Q Consensus 260 -~~~~~~--l~~l~--~~~~~~sII~IDEiD~l~~~~~~~-------~~ls~lL~~ldg~~~~~~~~~~i-vI~tTN~~~ 326 (480)
+.++++ ++-+| ++..+|++|||||||++++.|++. +..++||.+|||+.....+..+| |+++||.||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 445554 55555 455799999999999999877643 45799999999998743333444 455899999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
+||+||+| ||+++|++|+|+.++|..+++..|+.....-..+++.|++.++||||+||.++|+.+.+.+ +++.+.
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~---mRR~i~ 438 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMA---MRRKIA 438 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHH---HHHHHh
Confidence 99999999 9999999999999999999999997665555567889999999999999999998765544 444433
Q ss_pred HHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC-cccccccc
Q 011664 407 ALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS-FDLAAAEN 478 (480)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~-~~~~~~~~ 478 (480)
-+..... ..+ ..+.+. .|++++||++| +++++|||+ .|+..+||
T Consensus 439 g~~~~ei--------~~l--------------akE~~~-~pv~~~Dfe~A-----l~~v~pSvs~~d~~k~ek 483 (491)
T KOG0738|consen 439 GLTPREI--------RQL--------------AKEEPK-MPVTNEDFEEA-----LRKVRPSVSAADLEKYEK 483 (491)
T ss_pred cCCcHHh--------hhh--------------hhhccc-cccchhhHHHH-----HHHcCcCCCHHHHHHHHH
Confidence 2221100 000 011111 67999999999 999999999 78887776
No 7
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=354.70 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=186.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC----
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA---- 261 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~---- 261 (480)
.++|+|+-|.+++|+++.| +..|++.|..|.++|...|+||||.||||||||+||+|+|++.+.+|++...+++.
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 5789999999999999986 66799999999999999999999999999999999999999999999999988764
Q ss_pred --ChHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCccc
Q 011664 262 --DDADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQA 331 (480)
Q Consensus 262 --~~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~a 331 (480)
+...+|.+|.+ ..+||||||||||++.+.|.. .+++++||..|||+.. ++++|||++||.|+.||+|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q---NeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ---NEGIIVIGATNFPEALDKA 455 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc---CCceEEEeccCChhhhhHH
Confidence 46779999965 468999999999999987643 3679999999999987 7899999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 332 LLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 332 LlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
|.||||||++|.+|.||...|.+|++.|+....+.-+.|..-||.-|.|||||||++++.++
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999877766666778899999999999999999765
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-41 Score=351.01 Aligned_cols=219 Identities=18% Similarity=0.220 Sum_probs=194.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC----
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA---- 261 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~---- 261 (480)
.++|++|+|.+....++.+.+.. +++|+.|..+|..|+||+|||||||||||+||+|+|++++.+|+.|+..++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 57899999999999999988777 9999999999999999999999999999999999999999999999987654
Q ss_pred C--hHHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhccccccccc-CCceEEEEecCCCccCcc
Q 011664 262 D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCC-FEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 ~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~-~~~~ivI~tTN~~~~LD~ 330 (480)
+ +..++++|.++ ..|||+||||||++.+.|... +.+++||+.||++..... +..++||+|||+|+.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 3 56699999766 589999999999999987643 568999999999976422 467889999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITAL 408 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~ 408 (480)
||+|+||||+.|.+..|+..+|.+|++..+....+...-++++||..|.||.|||+..+|..| +..|++++...-
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~A---a~vAikR~ld~~ 419 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREA---AFVAIKRILDQS 419 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHH---HHHHHHHHhhcc
Confidence 999999999999999999999999999999877777777889999999999999999999765 456677765533
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-41 Score=356.56 Aligned_cols=264 Identities=22% Similarity=0.284 Sum_probs=214.7
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
.|.-|.++|+||+|.+++|.+|.+-+..|+++|+.|.. |...+.|||||||||||||.+|+|+|.++..+|+.|...++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 46678899999999999999999999999999999875 77777899999999999999999999999999999997665
Q ss_pred C------ChHHHHHHHHhh--cCCcEEEEecccccccCcccc--------cchhhhhhhcccccccccCCceEEEEecCC
Q 011664 261 A------DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA--------VSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 261 ~------~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~--------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
. +++++|++|.++ .+|||||+||+|+++++|+.+ +.+||||.+|||+.. .....++||+|||+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~-~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD-SSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC-CCCCceEEEecCCC
Confidence 3 467799999766 589999999999999987643 458999999999986 35678889999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCH-HHHHHHHHHHhccCCCCCchhHHHHHHhC-CCCCHHHHHHHHHHhhhcHHHHHH
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDF-SSFKTLASSYLGLKDHKLFPQVEEIFQNG-SSLSPAEIGELMIANRNSPSRALK 402 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~-~~r~~il~~~l~~~~~~l~~~i~~l~~~~-~g~s~adI~~ll~~a~~~~~~al~ 402 (480)
|+-|||||+||||||+-++++.++. +.+..+++........+-+.++.++|+.. ..|||||+=.+|..|+.+ |++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~---Aik 897 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLA---AIK 897 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHH---HHH
Confidence 9999999999999999999999865 55778888887766666566778888765 599999999999877654 455
Q ss_pred HHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC-ccccccc
Q 011664 403 SVITALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS-FDLAAAE 477 (480)
Q Consensus 403 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~-~~~~~~~ 477 (480)
+.+..++... . .++.+++ ..--|+|+||.|+ +++-+||+| .++-.||
T Consensus 898 R~i~~ie~g~-----------~---------~~~e~~~---~~v~V~~eDflks-----~~~l~PSvS~~EL~~ye 945 (953)
T KOG0736|consen 898 RTIHDIESGT-----------I---------SEEEQES---SSVRVTMEDFLKS-----AKRLQPSVSEQELLRYE 945 (953)
T ss_pred HHHHHhhhcc-----------c---------cccccCC---ceEEEEHHHHHHH-----HHhcCCcccHHHHHHHH
Confidence 5555544320 0 0001111 1244899999999 999999999 4554444
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=314.94 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=187.9
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...|.-++.||+|.+.+.++|++.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||...+.|+.+-.|++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C------ChHHHHHHH--HhhcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 A------DDADLKSLL--LQTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~------~~~~l~~l~--~~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
. +..-++++| +..++|||+||||||++...|.+ ++++-+|||++||+.+ .+.+-||+|||
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds---rgDvKvimATn 332 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS---RGDVKVIMATN 332 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc---cCCeEEEEecc
Confidence 4 234578888 45679999999999999875532 3567899999999988 57788999999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcH
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSP 397 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~ 397 (480)
+.+.|||||+||||+|+.|+||.||...++.|+..+.......-+..++.+....+.+|+|||.++|..+..-+
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllA 406 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLA 406 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHH
Confidence 99999999999999999999999999999999998877665555567788888778999999999998765433
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=305.06 Aligned_cols=214 Identities=25% Similarity=0.331 Sum_probs=190.8
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA- 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~- 261 (480)
..+.+++.||+|.+-+|++|++.++.++.+.++|+++|+.+|+|+|||||||||||+|++|+|+...+.|+.+..|++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred -----ChHHHHHHH--HhhcCCcEEEEecccccccCcc---------cccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 262 -----DDADLKSLL--LQTTSKSVILIEDLDRFLVEKP---------AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 262 -----~~~~l~~l~--~~~~~~sII~IDEiD~l~~~~~---------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+..-++.+| ++.++|+||||||||++...+- -++.+-+|||+|||+.. ..++-+|++||+.
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq---~~nvkvimatnra 304 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ---TTNVKVIMATNRA 304 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc---ccceEEEEecCcc
Confidence 234467776 5668999999999999986542 23568899999999987 5778899999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHH
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSR 399 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~ 399 (480)
+.|||||+||||+|+.|+||+|+..+++-++.......+..-..+++.+..+.+..|+|||..+|+.+.+.+++
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999988877776677889999999999999999999987665544
No 12
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=342.32 Aligned_cols=212 Identities=24% Similarity=0.332 Sum_probs=188.7
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC--
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-- 261 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-- 261 (480)
+..++|+|++|.+++|++|.| +..|+++|+.|.++|...|+|+||+||||||||+||+|+|.|.|.+|+.++.+++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 345899999999999999997 55799999999999999999999999999999999999999999999999999865
Q ss_pred ----ChHHHHHHHHhh--cCCcEEEEecccccccCccc----------ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 262 ----DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA----------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 262 ----~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~----------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+.+.++.+|..+ ..||||||||||++...+.+ ..+++|||..|||+.. ..++|++++||+|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~---~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET---SKGVIVLAATNRP 460 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC---CCcEEEEeccCCc
Confidence 477899999654 68999999999999876631 2579999999999987 5789999999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCC-CchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHH
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHK-LFPQVEEIFQNGSSLSPAEIGELMIANRNSPSR 399 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~-l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~ 399 (480)
+.||+||+||||||++|.++.|+...|.+|++.|+...+.. -..++..++..|.|||||||+++|.++.-.+.+
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999877664 234666799999999999999999887655554
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=300.56 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=188.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
|.++++-++|++.+.++|++.++.+.++|++|..+|++.|+|+|||||||||||.||+|+|.+..+.|+.++.+++.
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -C--hHHHHHHH--HhhcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 262 -D--DADLKSLL--LQTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 262 -~--~~~l~~l~--~~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+ ..-++++| ++.++|+|||+||||++.+.+.. ++++-+|||++||+.. ..++-+|++||+.+-
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea---tknikvimatnridi 298 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA---TKNIKVIMATNRIDI 298 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc---ccceEEEEecccccc
Confidence 2 23377777 56689999999999999875421 3567889999999988 678889999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHH
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPS 398 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~ 398 (480)
|||||+||||+|+.|+||+|+.++|..|++.+....+..-..++..+|+...|.|+|++...|..+.+.+.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~al 369 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYAL 369 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHH
Confidence 99999999999999999999999999999998876666556678999999999999999999988766543
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.3e-37 Score=317.45 Aligned_cols=210 Identities=25% Similarity=0.333 Sum_probs=183.5
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA- 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~- 261 (480)
..+.++|++|+|.+.+|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ---C--hHHHHHHHH--hhcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 262 ---D--DADLKSLLL--QTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 262 ---~--~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+ ...++.+|. ...+|+||||||||.++..+.+ ...+.++++.||++.. ..+++||+|||++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~---~~~v~VI~aTN~~ 294 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ---TTNVKVIMATNRA 294 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC---CCCEEEEEecCCc
Confidence 2 334667764 4468999999999999865421 1357789999999876 4678899999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
+.||||++||||||..|+|++|+.++|..|++.++...+.....+++.++..+.||||+||.++|..+..
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987666556678899999999999999999987654
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.8e-37 Score=341.27 Aligned_cols=260 Identities=22% Similarity=0.304 Sum_probs=211.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc----
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV---- 260 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~---- 260 (480)
+.++|++|+|++++|+.|.+.+..++++++.|.++|..+++|+|||||||||||++|+++|++++.+|+.++.+++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CC--hHHHHHHHHh--hcCCcEEEEecccccccCcccc-------cchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 261 AD--DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAA-------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 261 ~~--~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~-------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
.+ +..++.+|.. ...||||||||||.+++.++.. ..+++||..|||+.. ..+++||+|||+|+.||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~---~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE---LSNVVVIAATNRPDILD 604 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC---CCCEEEEEeCCChhhCC
Confidence 33 4458888854 4689999999999998765422 346889999999876 56789999999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQ 409 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~ 409 (480)
+|++||||||++|++|+|+.++|.+|++.++...+.....+++.|+..+.|||++||..+|+.+.. .++++.+....
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~---~a~~~~~~~~~ 681 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAM---AALRESIGSPA 681 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHhhhcc
Confidence 999999999999999999999999999999876665555678999999999999999999976543 34444332211
Q ss_pred hcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-cccccc
Q 011664 410 TDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAAAE 477 (480)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~~~ 477 (480)
.. .+.. . ..+ .....+++++||.++ +++++||++. +...||
T Consensus 682 ~~-----------~~~~-~-----~~~-----~~~~~~i~~~~f~~a-----l~~~~ps~~~~~~~~~~ 723 (733)
T TIGR01243 682 KE-----------KLEV-G-----EEE-----FLKDLKVEMRHFLEA-----LKKVKPSVSKEDMLRYE 723 (733)
T ss_pred ch-----------hhhc-c-----ccc-----ccccCcccHHHHHHH-----HHHcCCCCCHHHHHHHH
Confidence 00 0000 0 000 112257999999999 8999999995 334444
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=323.24 Aligned_cols=238 Identities=27% Similarity=0.365 Sum_probs=208.5
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA- 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~- 261 (480)
..+.++|++++|++++|+.+++.+..++.+++.|.+.|+.+++|+|||||||||||+||+|+|++++.+|+.++.+++.
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 4466899999999999999999999999999999999999999999999999999999999999999999999977554
Q ss_pred ---C--hHHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 262 ---D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 262 ---~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
+ +..++.+|..+ .+||||||||+|++++.++.. +.++++|.+|||+.. ..+++||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~---~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK---AEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc---cCceEEEecCCCcccc
Confidence 3 45689999655 589999999999999877643 578999999999987 6778899999999999
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc--hhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF--PQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~--~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
|+|++||||||..|++|+||.++|.+|++.++......+. .+++.+++.+.|||++||..+|+.+...+.+...
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~---- 467 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR---- 467 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999986555433 4567899999999999999999876554332211
Q ss_pred HHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC
Q 011664 407 ALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS 470 (480)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~ 470 (480)
..+++++||.++ +++++||++
T Consensus 468 --------------------------------------~~~~~~~~~~~a-----~~~~~p~~~ 488 (494)
T COG0464 468 --------------------------------------RREVTLDDFLDA-----LKKIKPSVT 488 (494)
T ss_pred --------------------------------------cCCccHHHHHHH-----HHhcCCCCC
Confidence 267899999999 889999988
No 17
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=303.37 Aligned_cols=263 Identities=19% Similarity=0.276 Sum_probs=203.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
-.++|+||+|++++|+.+++.+..++++|++|..-+ ..+++|+|||||||||||++|+|+|.+.|.+|+.|+++.+.+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 347899999999999999999999999999997433 457889999999999999999999999999999999986654
Q ss_pred ---hHH--HHHHH--HhhcCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 263 ---DAD--LKSLL--LQTTSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 263 ---~~~--l~~l~--~~~~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
+++ ++.+| +..-+||||||||+|+++..|.+. ...++|...+||+.+. ....++|.+|||+|.+||
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~-~~~rVlVlgATNRP~DlD 245 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSK-DSERVLVLGATNRPFDLD 245 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCC-CCceEEEEeCCCCCccHH
Confidence 333 55666 344589999999999998766432 3468899999999883 222355566999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQ 409 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~ 409 (480)
.|++| ||..+++++.|+.++|.+|++.+|...+..-..++.+++..|.||||+||.++|..+...| ++.++..-
T Consensus 246 eAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~---ire~~~~~- 319 (386)
T KOG0737|consen 246 EAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRP---IRELLVSE- 319 (386)
T ss_pred HHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhH---HHHHHHhc-
Confidence 99999 9999999999999999999999999888877778999999999999999999998765544 45554432
Q ss_pred hcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC
Q 011664 410 TDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS 470 (480)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~ 470 (480)
.. . ........+..+.+. ...+...|+++++||.++ ...+-+|+.
T Consensus 320 ~~--~---~d~d~~~~d~~~~~~------~~~~~~~r~l~~eDf~~a-----~~~v~~~~~ 364 (386)
T KOG0737|consen 320 TG--L---LDLDKAIADLKPTQA------AASSCLLRPLEQEDFPKA-----INRVSASVA 364 (386)
T ss_pred cc--c---hhhhhhhhhccCCcc------cccccccCcccHHHHHHH-----HHhhhhHHH
Confidence 10 0 000000111111111 022345699999999999 555555544
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=323.10 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=187.8
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC--
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-- 261 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-- 261 (480)
...++|.|++|.+++|+++.| +..|++.|..|..+|...|+|+||+||||||||+||+|+|.+.+.+|+.++.|++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 355899999999999999996 56799999999999999999999999999999999999999999999999999865
Q ss_pred ----ChHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 262 ----DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 262 ----~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
+.+.+|.+|.++ ++||||||||||++...|+. .+++++||.+|||+.. +++++++++||+|+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~---~~gviviaaTNRpd 299 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG---NEGVIVIAATNRPD 299 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC---CCceEEEecCCCcc
Confidence 578899999766 47999999999999876632 2689999999999986 68899999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
-|||||+||||||++|.++.||...|++|++.++.......+.++..++..|.|+|+||+.+++..+.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHH
Confidence 99999999999999999999999999999999988777776677888999999999999999997653
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=288.84 Aligned_cols=214 Identities=19% Similarity=0.236 Sum_probs=188.8
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...|.-+++||+|.+.+.+++.+.+..++.+++.|.++|+.+|+|+|+|||||||||.+|+|.|...+..|..+....+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred C----C--hHHHHHHH--HhhcCCcEEEEecccccccCcc---------cccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 A----D--DADLKSLL--LQTTSKSVILIEDLDRFLVEKP---------AAVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~----~--~~~l~~l~--~~~~~~sII~IDEiD~l~~~~~---------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
. + ..-++..| ++...|+||||||+|++...+. -++++-+|||++||+.+ .+.+-||++||
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss---~~~vKviAATN 318 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS---DDRVKVIAATN 318 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC---ccceEEEeecc
Confidence 3 2 33467766 4567899999999999986543 34678899999999988 57778999999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcH
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSP 397 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~ 397 (480)
+.+-|||||+|.||+|+.|+||.|+.++|..|++.+....+..-+.++++|+..|++|.+|+...+|..+.+.+
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHH
Confidence 99999999999999999999999999999999999988777777778899999999999999999998765543
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-36 Score=314.74 Aligned_cols=216 Identities=19% Similarity=0.274 Sum_probs=192.2
Q ss_pred cceeCCCCCC--CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 177 RWRSVPFTHP--STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 177 ~w~~v~~~~~--~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
+.+++.+..+ ..|++|+|+.++|+.+.+.+++|.+.|..|...+++.+.|+|||||||||||.||.|+|...+.+|+.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 3455555444 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcC------ChHHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEE
Q 011664 255 VDLSRVA------DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 255 i~~s~~~------~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
+...++. ++..+|.+|.++ ..|||+|+||+|+++++|+.. +.+++||.+|||... -.++.|++
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg---l~GV~i~a 808 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG---LDGVYILA 808 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc---cceEEEEE
Confidence 9876543 367799999655 589999999999999988754 448999999999987 68899999
Q ss_pred ecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 321 TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 321 tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
+|.+|+.|||||+||||+|+.++.|.|+..+|.+|++.........-..+++.+|..|+|||+||++.++-.|..
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765555666788999999999999999999976644
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.5e-35 Score=306.07 Aligned_cols=212 Identities=24% Similarity=0.263 Sum_probs=183.7
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...+..+|++|+|.+++++++.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC------hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 AD------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
.. ...++.+|.. ..+|+||||||+|.++..+.. ...+.++++.+|++.. ..+.+||+|||
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~---~~~v~VI~aTn 278 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP---RGNVKIIAATN 278 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC---CCCEEEEEecC
Confidence 32 3446667754 457999999999999865432 1346778888998765 46788999999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
+++.+|+|++||||||..|+||+|+.++|.+|++.++.........++..++..+.|||++||..+|..+..
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGM 350 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876655555678999999999999999999987654
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=278.85 Aligned_cols=198 Identities=18% Similarity=0.292 Sum_probs=176.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh-
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD- 263 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~- 263 (480)
+..+|||++|++++|+..+ .+..++.+|+.|..+ .|+++|+|||||||||++|+|+|++...+++.+..+++.++
T Consensus 116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 4579999999999999986 677899999988665 48899999999999999999999999999999998887652
Q ss_pred -----HHHHHHHHhh--cCCcEEEEecccccccCccc-------ccchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 264 -----ADLKSLLLQT--TSKSVILIEDLDRFLVEKPA-------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 264 -----~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~-------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
..+++++.++ .+|||+||||+|+++-++.- ...++.||..|||+.. +++++.|++||+|+.||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e---neGVvtIaaTN~p~~LD 268 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE---NEGVVTIAATNRPELLD 268 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc---CCceEEEeecCChhhcC
Confidence 4478888554 68999999999999876543 2457889999999987 79999999999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
||+++ ||+..|+|.+|+.++|..|++.|.+..+.++..+++.+++.+.|+|+.||.+-+.
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 99999 9999999999999999999999999999999889999999999999999987553
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=282.39 Aligned_cols=224 Identities=22% Similarity=0.230 Sum_probs=194.1
Q ss_pred eCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC
Q 011664 180 SVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR 259 (480)
Q Consensus 180 ~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~ 259 (480)
.|...+.+|++|++|-.++.+.+++.++.++.+|+.|-++|+.+|+|+|||||||||||.+|+|+|+..++.|+.+-.|+
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cC----C--hHHHHHHHH--hhcCCcEEEEecccccccCcc---------cccchhhhhhhcccccccccCCceEEEEec
Q 011664 260 VA----D--DADLKSLLL--QTTSKSVILIEDLDRFLVEKP---------AAVSLSGVLNFMDGVLNSCCFEERVMVFTM 322 (480)
Q Consensus 260 ~~----~--~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~---------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT 322 (480)
+. + ..-++++|. +....||||+||||++.+.+- -++++-+|++++||+.. ..++-|+++|
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp---rgnikvlmat 323 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP---RGNIKVLMAT 323 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC---CCCeEEEeec
Confidence 64 2 334788885 445679999999999987442 23678899999999987 5677788999
Q ss_pred CCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHH
Q 011664 323 NSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALK 402 (480)
Q Consensus 323 N~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~ 402 (480)
|+|+.|||||+||||+|+.++|.+|+.+.|..|++.+.......-+..++-|+....+-|+|+|..+|..+.+.+.++-+
T Consensus 324 nrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 324 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 99999999999999999999999999999999999887655555455567788888899999999999998888877766
Q ss_pred HHHH
Q 011664 403 SVIT 406 (480)
Q Consensus 403 ~~i~ 406 (480)
++..
T Consensus 404 k~at 407 (435)
T KOG0729|consen 404 KVAT 407 (435)
T ss_pred hhhh
Confidence 6543
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=303.37 Aligned_cols=211 Identities=23% Similarity=0.291 Sum_probs=182.6
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...++.+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred C------hHHHHHHHH--hhcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLL--QTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ ...++.+|. ....|+||||||||.++..+.. ...+.++|+.|||+.. ..++.||+|||+
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~---~~~V~VI~ATNr 331 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS---RGDVKVIMATNR 331 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc---cCCeEEEEecCC
Confidence 2 233666664 3468999999999999865432 2346789999999865 467889999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
++.||+|++||||||.+|+|++|+.++|.+|++.++.........+++.++..+.|||++||..+|..|..
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876655555578899999999999999999976544
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.6e-34 Score=304.56 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=180.3
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC--
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-- 261 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-- 261 (480)
.+.++|++|+|.+++|+++.+.+. ++++++.|...|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 467899999999999999997554 68999999999999999999999999999999999999999999999987653
Q ss_pred ----ChHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 262 ----DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 262 ----~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
+...++.+|..+ .+||||||||||.++..+.. ...+++||+.||++.+ ..+++||+|||+|+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~---~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT---NTGVIVIAATNRPD 204 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC---CCCeEEEEecCChh
Confidence 345688888654 57999999999999865432 2457889999999876 56788999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.||||++||||||.+|++++|+.++|.+|++.++.........++..++..+.|||++||..+|..+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999766555456788999999999999999999765
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-33 Score=299.67 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=166.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
+..+|++|+|.+.+|+.+.+....|.. .+...|.++++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 457899999999999999876655533 34567899999999999999999999999999999999999986543
Q ss_pred -C--hHHHHHHHH--hhcCCcEEEEecccccccCccc-------ccchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 262 -D--DADLKSLLL--QTTSKSVILIEDLDRFLVEKPA-------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 262 -~--~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~~-------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
+ +..++++|. +..+||||||||||.++..+.. ...++.|++.|+.. ...++||+|||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----KSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----CCceEEEEecCChhhCC
Confidence 3 455888885 4568999999999998764321 13356677777642 34678899999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCC--chhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKL--FPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l--~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
||++||||||..|+++.|+.++|.+|++.++....... ..+++.|+..+.||||+||.++|..+.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998654322 457889999999999999999987653
No 27
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=290.84 Aligned_cols=247 Identities=22% Similarity=0.277 Sum_probs=210.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
.++.|++++|++.+|+.+.+.+..++.++..|..+.- +.+|+||.||||||||+|++|||.|+++.|+.++.+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 5588999999999999999999999999999988754 567999999999999999999999999999999987654
Q ss_pred -ChH--HHHHHH--HhhcCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 262 -DDA--DLKSLL--LQTTSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 -~~~--~l~~l~--~~~~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
++. .++.+| ++..+|+||||||||.++..+..+ +...++|.++++..+ ...+.++||+|||.||.+|.
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s-~~~drvlvigaTN~P~e~De 305 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS-APDDRVLVIGATNRPWELDE 305 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC-CCCCeEEEEecCCCchHHHH
Confidence 443 477777 566799999999999999876433 457899999999987 55566777889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc-hhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHH--HHH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF-PQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSV--ITA 407 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~-~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~--i~~ 407 (480)
|++| ||.+++++|+|+.++|..++.+++...++.+. .+++.|++.|+|||++||.++|+.+.+.+.+.+... ++.
T Consensus 306 a~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~ 383 (428)
T KOG0740|consen 306 AARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF 383 (428)
T ss_pred HHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh
Confidence 9999 99999999999999999999999988766665 588999999999999999999999988887766643 111
Q ss_pred HHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc
Q 011664 408 LQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD 472 (480)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~ 472 (480)
. ..-..|++++.||+.+ ++.++|++|..
T Consensus 384 ~--------------------------------~~~~~r~i~~~df~~a-----~~~i~~~~s~~ 411 (428)
T KOG0740|consen 384 I--------------------------------DADKIRPITYPDFKNA-----FKNIKPSVSLE 411 (428)
T ss_pred c--------------------------------chhccCCCCcchHHHH-----HHhhccccCcc
Confidence 1 0112388999999999 99999999943
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.3e-32 Score=290.31 Aligned_cols=202 Identities=19% Similarity=0.322 Sum_probs=167.2
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc----------EE
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD----------VY 253 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~----------~~ 253 (480)
.++++|++|+|++++++.|++.+..++.+++.|...|+++++|+|||||||||||++|+++|++++.+ |+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 35789999999999999999999999999999999999999999999999999999999999998654 34
Q ss_pred EEeCCCc----CC--hHHHHHHHHhh------cCCcEEEEecccccccCcccc-------cchhhhhhhcccccccccCC
Q 011664 254 DVDLSRV----AD--DADLKSLLLQT------TSKSVILIEDLDRFLVEKPAA-------VSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 254 ~i~~s~~----~~--~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~-------~~ls~lL~~ldg~~~~~~~~ 314 (480)
.+..+++ .+ +..++.+|..+ ..|+||||||+|+++..++.. ..+++||++|||+.+ .+
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~---~~ 332 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES---LD 332 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc---CC
Confidence 4443332 22 33466666443 269999999999998765432 346899999999976 46
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+++||+|||+++.|||||+||||||.+|+|++|+.++|++|++.|+... .++..+ + ....|++++++..++..+
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~---l-~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD---L-AEFDGDREATAAALIQRA 406 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH---H-HHhcCCCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998642 233222 2 345799999999998764
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.6e-32 Score=297.12 Aligned_cols=207 Identities=25% Similarity=0.325 Sum_probs=179.1
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA- 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~- 261 (480)
.....+|++++|.+++|+++.+. ..+++.++.|..+|..+++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999764 5678999999999999999999999999999999999999999999999988754
Q ss_pred -----ChHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 262 -----DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 262 -----~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+...++.+|..+ ..||||||||||+++..++. ..++++||+.|||+.. ..+++||+|||++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~---~~~ViVIaaTN~~ 331 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG---NKGVIVIAATNRV 331 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC---CCCeeEEEecCch
Confidence 234577778654 57999999999999754421 2457889999999876 5678899999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+.+|+||+||||||.+|++++|+.++|.+|++.++.........++..++..+.|||++||.++|..+
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875544455678999999999999999999765
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=8e-32 Score=278.80 Aligned_cols=212 Identities=22% Similarity=0.261 Sum_probs=179.2
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred C------hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
. ...++.+|.. ...|+||||||+|.++..+.. ...+.++++.+|++.. ..++.||+|||+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~---~~~v~vI~ttn~ 270 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP---RGNVKVIAATNR 270 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEecCC
Confidence 2 2235556643 457999999999998754321 2346778888888755 457889999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhc
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNS 396 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~ 396 (480)
++.+|++++||||||..|+|+.|+.++|.+|++.++.........+++.++..+.|||++||..+|..+...
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998665544445788999999999999999999866543
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=4.7e-32 Score=311.17 Aligned_cols=187 Identities=16% Similarity=0.162 Sum_probs=153.2
Q ss_pred hhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh----------------------------
Q 011664 212 AKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD---------------------------- 263 (480)
Q Consensus 212 ~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~---------------------------- 263 (480)
++..+.++|..+++|+||+||||||||.||+|+|++++++|+.++++++.+.
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 3456678899999999999999999999999999999999999998765420
Q ss_pred ---------------------HHHHHHH--HhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE
Q 011664 264 ---------------------ADLKSLL--LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 264 ---------------------~~l~~l~--~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
..++.+| ++..+||||+|||||+++.......++++|++.|||....+...+++||+
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 1145566 44578999999999999876555566899999999875423356789999
Q ss_pred ecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc---hhHHHHHHhCCCCCHHHHHHHHHHhhhcH
Q 011664 321 TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF---PQVEEIFQNGSSLSPAEIGELMIANRNSP 397 (480)
Q Consensus 321 tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~---~~i~~l~~~~~g~s~adI~~ll~~a~~~~ 397 (480)
|||+|+.|||||+||||||++|+++.|+..+|++++...+...+..+. .+++.+|..|.|||||||+++|.+|...+
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765433333333 35789999999999999999998876544
Q ss_pred H
Q 011664 398 S 398 (480)
Q Consensus 398 ~ 398 (480)
.
T Consensus 1858 i 1858 (2281)
T CHL00206 1858 I 1858 (2281)
T ss_pred H
Confidence 4
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-32 Score=264.36 Aligned_cols=208 Identities=22% Similarity=0.305 Sum_probs=177.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
...+|+.++|+-++..++++.++.++..|..|.++|+.+|.|++||||||||||.+|+++|..+|++|+.+..+.+.+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred --hH--HHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 263 --DA--DLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 263 --~~--~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
++ -+++.|..+ ..|||||+||||+.++.+.+ +.++-+|+++|||+.. ...+-+|+|||+|+.
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~---l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT---LHRVKTIMATNRPDT 283 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh---cccccEEEecCCccc
Confidence 32 367777544 57999999999999875533 2568889999999987 567779999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|||||+||||+|+.+++|.|+...|..|++.+-......-.-+.+.+.+-.+||.++|+.+.|..+..
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccc
Confidence 99999999999999999999999999987766543322212235677777899999999998876543
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.2e-30 Score=285.32 Aligned_cols=207 Identities=23% Similarity=0.322 Sum_probs=178.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
...+|+++.|.+..++.+.+.+. ++..+..|..++...++|+||+||||||||++++++|++++.+|+.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 45789999999999999987654 57778888888888899999999999999999999999999999999987643
Q ss_pred ---ChHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 262 ---DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 262 ---~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+...++.+|..+ .+||||||||||.++..++. ...+++||..|||+.+ ..++++|+|||+|+.
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~---~~~vivIaaTN~p~~ 302 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG---NEGIIVIAATNRPDV 302 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC---CCCeeEEEecCChhh
Confidence 245577777544 58999999999999865532 2467899999999876 577899999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
||+|++||||||++|++++|+.++|.+|++.++...+.....++..++..+.|||++||.++|+.+..
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987665555677889999999999999999987644
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.5e-29 Score=283.50 Aligned_cols=207 Identities=21% Similarity=0.309 Sum_probs=179.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|..+++|+|||||||||||++++++|++++.+++.++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred -C--hHHHHHHHHhh--cCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 262 -D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 -~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+ +..++.+|..+ ..|+||||||||.+++.+.. ...+++|++.||++.. ...++||+|||+++.||+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~---~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG---RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc---CCCEEEEeecCChhhcCH
Confidence 2 34577777543 57899999999999876543 2356789999999866 456788889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
+++|||||+..|+++.|+.++|.+|++.+.......-..+++.+++.+.||+++|+..++..+.
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998876554444556889999999999999999987653
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-30 Score=270.12 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=186.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
++.+ ++++|.......+.+.+..++..+..|...|.++++|+|+|||||||||.+++|+|++.++.++.++.+++.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 899999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---ChHHHHHHHHhh--cC-CcEEEEecccccccCccc-----ccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 262 ---DDADLKSLLLQT--TS-KSVILIEDLDRFLVEKPA-----AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 ---~~~~l~~l~~~~--~~-~sII~IDEiD~l~~~~~~-----~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+++.+++.|+++ .+ |++|||||+|.+++++.. .+..++++..|||..+ ..++|+++|||+|+.|||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~---~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP---DAKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC---cCcEEEEEecCCccccCh
Confidence 366799999765 35 999999999999986543 3557899999999986 577888999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhc
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNS 396 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~ 396 (480)
+++| ||||..+++..|+..+|..|++.+....++.-..++..++..+.||+++|+..+|..+...
T Consensus 336 alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 336 ALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred hhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999887777557889999999999999999999876543
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=278.20 Aligned_cols=208 Identities=23% Similarity=0.312 Sum_probs=179.2
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-----cEEEEe--
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-----DVYDVD-- 256 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-----~~~~i~-- 256 (480)
...++|++|+|+++++..+++-+..++.+|+.|..+++.+|+|+|+|||||||||++|+|+|..+.. .|+.-+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3457899999999999999999999999999999999999999999999999999999999998732 344333
Q ss_pred --CCCcCCh--HHHHHHHHh--hcCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCC
Q 011664 257 --LSRVADD--ADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 257 --~s~~~~~--~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
++.+.++ .+++-+|.+ ...|+|||+||||-+++-+++. ..++.||..|||+.+ .+.+++|+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds---RgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS---RGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC---CCceEEEcccCC
Confidence 4556654 458888854 4689999999999998876443 457889999999988 577888999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
|+.+||||+||||||+.++||+|+.++|.+|+..+......++... ...|++.+.||-+|||+.+|..|.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887766665554 478999999999999999998654
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-30 Score=262.56 Aligned_cols=251 Identities=19% Similarity=0.280 Sum_probs=186.9
Q ss_pred CCCCcccc--ccChHHHHH-HHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEE-EEe----
Q 011664 185 HPSTFDTI--SMETDLKNR-VKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVY-DVD---- 256 (480)
Q Consensus 185 ~~~~~~~i--~g~~~~k~~-l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~-~i~---- 256 (480)
|.-.|+++ +|++.--.. .+.+...-+-.|+.-+++|++..+|+|||||||||||.+|+.|...+++.=. .++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 34467775 555433332 2333333344688889999999999999999999999999999999876432 233
Q ss_pred CCCcCC--hHHHHHHHHhh----------cCCcEEEEecccccccCcccc--------cchhhhhhhcccccccccCCce
Q 011664 257 LSRVAD--DADLKSLLLQT----------TSKSVILIEDLDRFLVEKPAA--------VSLSGVLNFMDGVLNSCCFEER 316 (480)
Q Consensus 257 ~s~~~~--~~~l~~l~~~~----------~~~sII~IDEiD~l~~~~~~~--------~~ls~lL~~ldg~~~~~~~~~~ 316 (480)
++++.+ ++++|.+|+.+ ..-.||++||||++|..|++. ..+++||.-|||+.. -+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq---LNNI 370 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ---LNNI 370 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh---hhcE
Confidence 334444 56799999654 133799999999999876543 348999999999988 6889
Q ss_pred EEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC--CC--CCchhHHHHHHhCCCCCHHHHHHHHHH
Q 011664 317 VMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK--DH--KLFPQVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 317 ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~--~~--~l~~~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
+||+-||+++.+|+||+|||||+.++++.+||++.|.+|++.+.... .. .-+.++++||..|.+||||+|..+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999887642 22 234467899999999999999999987
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc
Q 011664 393 NRNSPSRALKSVITALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF 471 (480)
Q Consensus 393 a~~~~~~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~ 471 (480)
|... |+.+.++.- .++...+.....-.|++.||..| +..++|+...
T Consensus 451 A~S~---A~nR~vk~~-------------------------~~~~~~~~~~e~lkV~r~DFl~a-----L~dVkPAFG~ 496 (744)
T KOG0741|consen 451 AQSF---AMNRHVKAG-------------------------GKVEVDPVAIENLKVTRGDFLNA-----LEDVKPAFGI 496 (744)
T ss_pred HHHH---HHHhhhccC-------------------------cceecCchhhhheeecHHHHHHH-----HHhcCcccCC
Confidence 6543 344333211 00001122222356899999999 7889998764
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=5.5e-28 Score=243.92 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=142.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
...+|+++.|.=.+-....+.+...+ .+.+....|+.+|++++||||||||||++|+++|+++|.+++.++.+++.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 44577777333333333333222221 12233446889999999999999999999999999999999999977654
Q ss_pred -C--hHHHHHHHHhhc-------CCcEEEEecccccccCcccc------cc-hhhhhhhcccc--------c-ccccCCc
Q 011664 262 -D--DADLKSLLLQTT-------SKSVILIEDLDRFLVEKPAA------VS-LSGVLNFMDGV--------L-NSCCFEE 315 (480)
Q Consensus 262 -~--~~~l~~l~~~~~-------~~sII~IDEiD~l~~~~~~~------~~-ls~lL~~ldg~--------~-~~~~~~~ 315 (480)
+ +..++++|..+. +||||||||||++++.+++. +. ..+|++.||+. | .......
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 3 455899996543 69999999999999876422 12 36889998863 3 1112456
Q ss_pred eEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCC
Q 011664 316 RVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSS 380 (480)
Q Consensus 316 ~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g 380 (480)
++||+|||+|+.|||||+||||||+.+ ..|+.++|..|++.+++..+.. ..++..|+..+.|
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 788899999999999999999999865 5899999999999999876554 4677888876654
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.86 E-value=1e-21 Score=165.84 Aligned_cols=96 Identities=26% Similarity=0.373 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHhh-hhccceEEEEeecCCCCCcchHHHHHHHHhccccCCccccccccccCCCCCceEEecCCC
Q 011664 22 LFKTGLIFVAKKWWRFIED-CLHVHQFFKVPEFNEGMQENQLYRKVYAYLNSLTSIEDSDFTNLFTGKKSNDIVLGLDPN 100 (480)
Q Consensus 22 ~~~~~l~~~~~~~~~~l~~-~~~~~~~~~i~e~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (480)
|+|++|++++.++++++.. +|+||++++|+|+. |+++|++|+||++||+++++.+++++ ++..++++++++++|++|
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~-g~~~N~ly~a~~~YL~s~~s~~a~rL-~~~~~~~~~~~~l~l~~~ 78 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFD-GLSRNELYDAAQAYLSSKISPSARRL-KASKSKNSKNLVLSLDDG 78 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCC-CccccHHHHHHHHHHhhccCccccee-eecccCCCCceEEecCCC
Confidence 6899999999999988665 99999999999997 68999999999999999999999776 688899999999999999
Q ss_pred CceeecccceeEEEEeccC
Q 011664 101 QLIQDNFLGAPLSWANQDD 119 (480)
Q Consensus 101 ~~~~d~f~g~~~~w~~~~~ 119 (480)
++|.|+|+|+++||.+.+.
T Consensus 79 e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 79 EEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred CEEEEEECCEEEEEEEEcc
Confidence 9999999999999998764
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=1.4e-19 Score=172.51 Aligned_cols=195 Identities=15% Similarity=0.206 Sum_probs=131.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA 264 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~ 264 (480)
.|.+|++++|++++++.+.-.+.....+. ....++|||||||+||||||+.||++++.++...+...+....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAG 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHH
Confidence 67899999999999998775554432221 1234799999999999999999999999999999988777778
Q ss_pred HHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccc----ccC---------CceEEEEecCCCccCccc
Q 011664 265 DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----CCF---------EERVMVFTMNSKDHVDQA 331 (480)
Q Consensus 265 ~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----~~~---------~~~ivI~tTN~~~~LD~a 331 (480)
++..++.....+.|||||||+.+-. ....-|+..|+...-. .+. ..--+|+||++...|.++
T Consensus 91 dl~~il~~l~~~~ILFIDEIHRlnk-----~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~p 165 (233)
T PF05496_consen 91 DLAAILTNLKEGDILFIDEIHRLNK-----AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSP 165 (233)
T ss_dssp HHHHHHHT--TT-EEEECTCCC--H-----HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHC
T ss_pred HHHHHHHhcCCCcEEEEechhhccH-----HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchh
Confidence 8888888888899999999998832 1223344444321100 111 123578899999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 332 LLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 332 LlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+. ||.....+.+++.++..+|+.+.....+.++.++. .++|.+. .-||.--..+++..++
T Consensus 166 Lrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 166 LRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRD 227 (233)
T ss_dssp CCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCC
T ss_pred HHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHH
Confidence 999 99999999999999999999988877777777655 4666655 6678776777766543
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=2.3e-20 Score=163.65 Aligned_cols=117 Identities=29% Similarity=0.581 Sum_probs=96.2
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------hHHHHHHHHhh--cC-CcEEEEecccccccCcc-----
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------DADLKSLLLQT--TS-KSVILIEDLDRFLVEKP----- 292 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------~~~l~~l~~~~--~~-~sII~IDEiD~l~~~~~----- 292 (480)
+||+||||||||++|+++|+.++.+++.++++.+.+ ...+...|.++ .. |+||+|||+|.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999987652 34467777554 34 89999999999987651
Q ss_pred -cccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCC
Q 011664 293 -AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 293 -~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
....+..|++.++..... ...+++|+|||.++.++++++| |||+.+|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~--~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK--NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT--SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc--cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 123467888999887762 3568899999999999999998 89999999984
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-19 Score=183.03 Aligned_cols=195 Identities=25% Similarity=0.330 Sum_probs=143.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC---
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD--- 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~--- 262 (480)
...|++|+..+.+++.|.+....--+.+ ....+-|++|+|||||||||++|+-+|...|.+.-.....++..
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch
Confidence 3459999999999999876544332221 22335578999999999999999999999999988877766542
Q ss_pred --hHHHHHHHH--hh-cCCcEEEEecccccccCcccc-------cchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 263 --DADLKSLLL--QT-TSKSVILIEDLDRFLVEKPAA-------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 263 --~~~l~~l~~--~~-~~~sII~IDEiD~l~~~~~~~-------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
-..+.++|. +. ...-+|||||.|+++..+... ..++.||-- -|-. ....++|++||+|.++|.
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-TGdq----SrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQ----SRDIVLVLATNRPGDLDS 500 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-hccc----ccceEEEeccCCccchhH
Confidence 334677774 22 345688999999998766533 123444322 2322 356778889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccC-------CC---------------CCc-----hhHHHHHHhCCCCCH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK-------DH---------------KLF-----PQVEEIFQNGSSLSP 383 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~-------~~---------------~l~-----~~i~~l~~~~~g~s~ 383 (480)
|+-. |+|..|+||+|..++|..|+..|+... +. .+. .-+.+.+..|.||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999 999999999999999999999988531 10 011 123567788999999
Q ss_pred HHHHHHHHH
Q 011664 384 AEIGELMIA 392 (480)
Q Consensus 384 adI~~ll~~ 392 (480)
.+|..|+..
T Consensus 579 REiakLva~ 587 (630)
T KOG0742|consen 579 REIAKLVAS 587 (630)
T ss_pred HHHHHHHHH
Confidence 999998754
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=5.2e-19 Score=177.20 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=127.0
Q ss_pred cc-ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC---CceEEEEccCCCcHHHHHHHHHHcCC-------CcEEEEeC
Q 011664 189 FD-TISMETDLKNRVKSDLESFLKAKHYYHRLGRVW---KRSYLLYGPSGTGKSSFAAAMASFMS-------YDVYDVDL 257 (480)
Q Consensus 189 ~~-~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~---~rgiLL~GPpGTGKT~La~aiA~~l~-------~~~~~i~~ 257 (480)
++ +++|++++|+.|.+.+.. +..++.+.+.|... ..++||+||||||||++|+++|..+. .+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 689999999999987666 66777778888764 34899999999999999999998663 26888886
Q ss_pred CCcCC------hHHHHHHHHhhcCCcEEEEecccccccCcc----cccchhhhhhhcccccccccCCceEEEEecCC--C
Q 011664 258 SRVAD------DADLKSLLLQTTSKSVILIEDLDRFLVEKP----AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS--K 325 (480)
Q Consensus 258 s~~~~------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~----~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~--~ 325 (480)
+++.+ ...++.+|.++ .+++|||||++.+...+. +......|++.|+.- ..+.+||++++. .
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-----~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-----RDDLVVILAGYKDRM 172 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-----CCCEEEEEeCCcHHH
Confidence 55432 23355566654 458999999998853321 223456778888642 245666776543 2
Q ss_pred cc---CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 326 DH---VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 326 ~~---LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
+. ++|+|.+ ||+..|+||.++.+++..|++.++......+.+
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~ 217 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSA 217 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCH
Confidence 32 4899999 999999999999999999999999765544443
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=2.1e-18 Score=170.71 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=124.9
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC---CceEEEEccCCCcHHHHHHHHHHcC-------CCcEEEEeC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVW---KRSYLLYGPSGTGKSSFAAAMASFM-------SYDVYDVDL 257 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~---~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~~i~~ 257 (480)
.+++++|++++|+.|.+.+...... ....+.|... ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3678999999999999877665444 3344456543 3468999999999999999999864 235777776
Q ss_pred CCcCC------hHHHHHHHHhhcCCcEEEEecccccccCccc---ccchhhhhhhcccccccccCCceEEEEecCCC---
Q 011664 258 SRVAD------DADLKSLLLQTTSKSVILIEDLDRFLVEKPA---AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK--- 325 (480)
Q Consensus 258 s~~~~------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~---~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~--- 325 (480)
+++.+ ...++.+|.++ .++||||||+|.+...... ...+..|+..|+... ...++|++++..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-----~~~~vila~~~~~~~ 156 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-----NEFVLILAGYSDEMD 156 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-----CCEEEEecCCcchhH
Confidence 65543 23456666554 4689999999998642221 234566777776532 334555554322
Q ss_pred --ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 326 --DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 326 --~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
..++|+|++ ||+.+|+||.++.+++.+|++.++...+..+.++.
T Consensus 157 ~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 157 YFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred HHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 236899999 99999999999999999999999987666666554
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=2.9e-18 Score=175.25 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=145.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA 264 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~ 264 (480)
.|.+|++++|.++.++.+...+...... + ..+.++|||||||||||++|+++|++++.++..++.+.+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 5779999999999999988766543221 1 2456899999999999999999999999998888777666666
Q ss_pred HHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc--------ccCCceEEEEecCCCccCccc
Q 011664 265 DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS--------CCFEERVMVFTMNSKDHVDQA 331 (480)
Q Consensus 265 ~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~--------~~~~~~ivI~tTN~~~~LD~a 331 (480)
.+..++.....++||||||||.+.... ...+.+.|+... .. .......+|++||.+..++++
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~-----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVV-----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHH-----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHH
Confidence 777777777788999999999884321 112333333211 00 001235678899999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHHh
Q 011664 332 LLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 332 LlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~a 393 (480)
|++ ||...+.+++|+.+++.++++...+..+..+.++. +.++... +-+|..+..++...
T Consensus 167 L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~ 226 (328)
T PRK00080 167 LRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRS-RGTPRIANRLLRRV 226 (328)
T ss_pred HHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHH
Confidence 999 99999999999999999999999887777776654 5676666 45667677666543
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=2.9e-18 Score=171.99 Aligned_cols=172 Identities=19% Similarity=0.273 Sum_probs=125.2
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCc---eEEEEccCCCcHHHHHHHHHHcCC-------CcEEEEeCCC
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKR---SYLLYGPSGTGKSSFAAAMASFMS-------YDVYDVDLSR 259 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~r---giLL~GPpGTGKT~La~aiA~~l~-------~~~~~i~~s~ 259 (480)
++++|++++|++|.+.+.. +..++.+...|...+. ++||+||||||||++|+++|..+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999987655 5556777778876542 489999999999999999998652 2578887654
Q ss_pred cCC------hHHHHHHHHhhcCCcEEEEecccccccCcc----cccchhhhhhhcccccccccCCceEEEEecCCC--c-
Q 011664 260 VAD------DADLKSLLLQTTSKSVILIEDLDRFLVEKP----AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK--D- 326 (480)
Q Consensus 260 ~~~------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~----~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~--~- 326 (480)
+.+ ......++.++ .++||||||+|.+...+. +......|+..|+.. ..+.+||++++.. +
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-----~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-----RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-----CCCEEEEEeCCcHHHHH
Confidence 432 22344555554 568999999999864321 223456677777643 2346677776532 1
Q ss_pred --cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 327 --HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 327 --~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
.++|+|++ ||+.+|+|++++.+++.+|+..++...+..+.++
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 34699999 9999999999999999999999998766555543
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=8e-18 Score=169.77 Aligned_cols=189 Identities=16% Similarity=0.223 Sum_probs=138.4
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLK 267 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~ 267 (480)
+|++++|.+++++.+...+......+ ..+.+++||||||||||++|+++|++++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 69999999999999887665443221 2345799999999999999999999999988877766555555666
Q ss_pred HHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccc-------------ccCCceEEEEecCCCccCcccccC
Q 011664 268 SLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS-------------CCFEERVMVFTMNSKDHVDQALLR 334 (480)
Q Consensus 268 ~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~-------------~~~~~~ivI~tTN~~~~LD~aLlr 334 (480)
..+.....+.+|||||+|.+.+.. ...|++.|+..... ......++|++||++..+++++++
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~-----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV-----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH-----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh
Confidence 666666788999999999885321 22344443321100 011236788899999999999999
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHH
Q 011664 335 PGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 335 pGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~ 392 (480)
||...+.+++|+.++..++++..++..+..+.++. +.++....| .|..+..++..
T Consensus 149 --R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~ 204 (305)
T TIGR00635 149 --RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRR 204 (305)
T ss_pred --hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 99999999999999999999988876666666554 567666544 45555555543
No 48
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=178.12 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=153.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCC-ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWK-RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKS 268 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~-rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~ 268 (480)
.+=.|++++|++|.|.+.--...++ .+ .-++|+||||+|||+|+++||..+|..|+.++++.+.++++++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~--------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK--------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc--------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 3568999999999987754322211 12 24678999999999999999999999999999999998887643
Q ss_pred H---------------HHhh-cCCcEEEEecccccccCcccccchhhhhhhccccccc----------ccCCceEEEEec
Q 011664 269 L---------------LLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----------CCFEERVMVFTM 322 (480)
Q Consensus 269 l---------------~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----------~~~~~~ivI~tT 322 (480)
. +.++ ....+++|||||.+..+-. ...-+.||..+|.-.+. ..-.+++||+|.
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r-GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR-GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC-CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 1 2222 2446999999999976533 33458899888855442 112468899999
Q ss_pred CCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHH--HHHhCCCCCHHHHHHHHHH-hhhcHHH
Q 011664 323 NSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEE--IFQNGSSLSPAEIGELMIA-NRNSPSR 399 (480)
Q Consensus 323 N~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~--l~~~~~g~s~adI~~ll~~-a~~~~~~ 399 (480)
|..+.++.+|+. ||+ +|+++-++.++..+|+++||=.. .+++ |-...-.++.+-|..+++. +|++.+|
T Consensus 474 Nsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk------~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR 544 (782)
T COG0466 474 NSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPK------QLKEHGLKKGELTITDEAIKDIIRYYTREAGVR 544 (782)
T ss_pred CccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchH------HHHHcCCCccceeecHHHHHHHHHHHhHhhhhh
Confidence 999999999999 996 99999999999999999998422 1111 1111235777778887766 6788999
Q ss_pred HHHHHHHHHHhc
Q 011664 400 ALKSVITALQTD 411 (480)
Q Consensus 400 al~~~i~~~~~~ 411 (480)
.|++.+..+.++
T Consensus 545 ~LeR~i~ki~RK 556 (782)
T COG0466 545 NLEREIAKICRK 556 (782)
T ss_pred HHHHHHHHHHHH
Confidence 999999988877
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=1.7e-17 Score=187.18 Aligned_cols=206 Identities=20% Similarity=0.235 Sum_probs=137.5
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH------
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA------ 264 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~------ 264 (480)
++.|++++|+.|.+.+...... +......+||+||||||||++|+++|+.++.+++.++++.+.+.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 5889999999998866544322 112233799999999999999999999999999999876543322
Q ss_pred ---------HHHHHHHhh-cCCcEEEEecccccccCcccccchhhhhhhccccccc----------ccCCceEEEEecCC
Q 011664 265 ---------DLKSLLLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----------CCFEERVMVFTMNS 324 (480)
Q Consensus 265 ---------~l~~l~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----------~~~~~~ivI~tTN~ 324 (480)
.+.+.|..+ ..+.||||||||.+..+.. ....+.|+..||..... ....+.++|+|||.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~-~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~ 472 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR-GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS 472 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccC-CCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC
Confidence 234445433 2445999999999975432 22346677777631110 11246788999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHH-hhhcHHHHHHH
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIA-NRNSPSRALKS 403 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~-a~~~~~~al~~ 403 (480)
++.++++|++ ||+ .|+|+.|+.+++.+|+++|+...... ...+....-.+++..+..++.. .++..+|.|++
T Consensus 473 ~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~----~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 473 IDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALE----DHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred chhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHH----HcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 9999999999 996 79999999999999999987321000 0000011124566666666553 33445566666
Q ss_pred HHHHHHhc
Q 011664 404 VITALQTD 411 (480)
Q Consensus 404 ~i~~~~~~ 411 (480)
.++.+.++
T Consensus 546 ~i~~~~~~ 553 (775)
T TIGR00763 546 QIEKICRK 553 (775)
T ss_pred HHHHHHHH
Confidence 66655544
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-18 Score=169.68 Aligned_cols=169 Identities=19% Similarity=0.306 Sum_probs=130.4
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhh-CCCCCceEEEEccCCCcHHHHHHHHHHcCCC---------cEEEEeC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRL-GRVWKRSYLLYGPSGTGKSSFAAAMASFMSY---------DVYDVDL 257 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~-g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~---------~~~~i~~ 257 (480)
-|+.++-+.++|+++.......+...+.--.. =+.|.|-+||+||||||||+|++|+|+.+.. .++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47888999999999998776665544332221 2568899999999999999999999998743 4667775
Q ss_pred CC----cCChH--HHHHHHHhhc-----CC--cEEEEecccccccCccc----------ccchhhhhhhcccccccccCC
Q 011664 258 SR----VADDA--DLKSLLLQTT-----SK--SVILIEDLDRFLVEKPA----------AVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 258 s~----~~~~~--~l~~l~~~~~-----~~--sII~IDEiD~l~~~~~~----------~~~ls~lL~~ldg~~~~~~~~ 314 (480)
.+ |.+++ .+.++|.+.. .. -.++|||++++...|.+ -+.++.+|.+||.+.. ..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~---~~ 296 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR---YP 296 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc---CC
Confidence 44 44443 3566665432 23 34579999998764421 1458899999999987 57
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
++++.+|+|-.+.||.|+.. |-|-+.++++|+.+++.+|++..+.
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 88888899999999999999 9999999999999999999987653
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.3e-16 Score=155.24 Aligned_cols=194 Identities=14% Similarity=0.212 Sum_probs=147.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA 264 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~ 264 (480)
+|.+|++.+|++++|+.+.-.+...-.+. ...-.+|||||||.||||||+.||+++|.++-..+...+....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 68899999999999988875555443222 2345799999999999999999999999999999998888899
Q ss_pred HHHHHHHhhcCCcEEEEecccccccCcccccchhh-hhhhccccccc----cc---------CCceEEEEecCCCccCcc
Q 011664 265 DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSG-VLNFMDGVLNS----CC---------FEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 265 ~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~-lL~~ldg~~~~----~~---------~~~~ivI~tTN~~~~LD~ 330 (480)
++..++......+|+|||||+.+.+. ..+ |.-.|+.+.-+ .. -..--+|+||.+...|..
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~~------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~ 166 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSPA------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN 166 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcChh------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc
Confidence 99999999999999999999998532 122 22333321100 00 112347889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
.|+. ||....++.+++.++..+|+++.....+..+.++- .++|.+. .-||.--..++++.++
T Consensus 167 PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRD 229 (332)
T COG2255 167 PLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRD 229 (332)
T ss_pred hhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHH
Confidence 9999 99999999999999999999998877777776654 5666665 5566555555554443
No 52
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-16 Score=168.19 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=147.4
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHH--
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLK-- 267 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~-- 267 (480)
+|=.|++++|++|.|.+.-- ++ .|-.-.+-++|+||||+|||+++++||..+|..|+.+++..+.+.++++
T Consensus 411 eDHYgm~dVKeRILEfiAV~----kL---rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG----KL---RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHH----hh---cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999866421 11 1111223467889999999999999999999999999998887766553
Q ss_pred -------------HHHHhh-cCCcEEEEecccccccCcccccchhhhhhhccccccc----------ccCCceEEEEecC
Q 011664 268 -------------SLLLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----------CCFEERVMVFTMN 323 (480)
Q Consensus 268 -------------~l~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----------~~~~~~ivI~tTN 323 (480)
+.+.+. ....+++|||||.+...- ....-+.||..||.-.+. ..-..+++|+|.|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~-qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGH-QGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCC-CCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 222222 245699999999997322 234457888888754431 1124688999999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC---CCCCchhHHHHHHhCCCCCHHHHHHHHHH-hhhcHHH
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK---DHKLFPQVEEIFQNGSSLSPAEIGELMIA-NRNSPSR 399 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~---~~~l~~~i~~l~~~~~g~s~adI~~ll~~-a~~~~~~ 399 (480)
..+.|+++|+. ||+ .|+++-+..++...|+++||-.. .+.+.+ ....++.+.+..++.. ++++.+|
T Consensus 563 ~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~-------e~v~is~~al~~lI~~YcrEaGVR 632 (906)
T KOG2004|consen 563 VIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKP-------EQVKISDDALLALIERYCREAGVR 632 (906)
T ss_pred ccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCH-------HhcCccHHHHHHHHHHHHHHHhHH
Confidence 99999999999 996 89999999999999999998432 122221 1235555666666654 6788888
Q ss_pred HHHHHHHHHHhc
Q 011664 400 ALKSVITALQTD 411 (480)
Q Consensus 400 al~~~i~~~~~~ 411 (480)
.|++-++.+.++
T Consensus 633 nLqk~iekI~Rk 644 (906)
T KOG2004|consen 633 NLQKQIEKICRK 644 (906)
T ss_pred HHHHHHHHHHHH
Confidence 888888877655
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.2e-16 Score=164.99 Aligned_cols=192 Identities=15% Similarity=0.175 Sum_probs=143.2
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEeCCCcCChH-
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVDLSRVADDA- 264 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~~s~~~~~~- 264 (480)
.+++-.+..|++..+....+ ...+..+||+||+|||||.|++++++++. +++..++|+.+.+.+
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56666677777666533333 23455899999999999999999999874 467788998887643
Q ss_pred -H----HHHHHHhh--cCCcEEEEecccccccCcccc--------cchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 265 -D----LKSLLLQT--TSKSVILIEDLDRFLVEKPAA--------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 265 -~----l~~l~~~~--~~~sII~IDEiD~l~~~~~~~--------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
. +...|.++ .+|+||++||+|++++..+.+ ..+..+++++-.... ..+..+.+|+|.+....|.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-KRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-ccCcEEEEEEechhhhhcC
Confidence 2 34445443 699999999999998733222 225566766543333 2233456788889999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCC-CCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKD-HKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~-~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
|-|.+|++|+.++.+|.|+..+|.+|+...+.... .....+++-++..|+||.+-|+..++.++
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa 620 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA 620 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence 99999999999999999999999999999886543 23445677789999999999999887644
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=8.8e-16 Score=163.56 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=119.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+++.|...+. .. ..+.++|||||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 68899999999998777665333 21 24557999999999999999999998764
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+.-.+-..++.+.... ....||+|||+|.+. ......|+..++.. +.
T Consensus 77 c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----~~a~~~LLk~LE~p-----~~ 146 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----KEAFNALLKTLEEP-----PS 146 (472)
T ss_pred HHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----HHHHHHHHHHHHhC-----CC
Confidence 56777765444555666654332 245799999999884 22346677777642 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
..++|++|+.+..+++++++ |+. .++|.+++.++...+++..+...+..+.+
T Consensus 147 ~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 56777777788899999999 885 89999999999888888887655555543
No 55
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.68 E-value=1.6e-15 Score=146.58 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=155.7
Q ss_pred CCcceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCc
Q 011664 175 CGRWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYD 251 (480)
Q Consensus 175 ~~~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~ 251 (480)
.+....|+...++.+++++|.+.+|+.|.+....|+.+. +...+||||++|||||++++|+.++. |..
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 345778888889999999999999999999998887652 45689999999999999999999866 778
Q ss_pred EEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc-
Q 011664 252 VYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ- 330 (480)
Q Consensus 252 ~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~- 330 (480)
++.++-.++..-..+...+.....+-|||+||+- + .........|-..|||-.. ..+++++|.+|+|+..-+.+
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--F--e~~d~~yk~LKs~LeGgle-~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--F--EEGDTEYKALKSVLEGGLE-ARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--C--CCCcHHHHHHHHHhcCccc-cCCCcEEEEEecchhhccchh
Confidence 8888887887777777888877889999999965 2 2223345677788888766 55788889999996422211
Q ss_pred ----------------------cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHH----HHHHhCCCCCH
Q 011664 331 ----------------------ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVE----EIFQNGSSLSP 383 (480)
Q Consensus 331 ----------------------aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~----~l~~~~~g~s~ 383 (480)
+|-. ||...|.|..|+.++..+|++.|++..+..+.. ++. ..+....|.||
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSG 235 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSG 235 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 2334 999999999999999999999999887777763 332 23344456777
Q ss_pred HHHHHHHH
Q 011664 384 AEIGELMI 391 (480)
Q Consensus 384 adI~~ll~ 391 (480)
.--.+.+.
T Consensus 236 RtA~QF~~ 243 (249)
T PF05673_consen 236 RTARQFID 243 (249)
T ss_pred HHHHHHHH
Confidence 65555543
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=1e-15 Score=164.27 Aligned_cols=177 Identities=20% Similarity=0.303 Sum_probs=132.5
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
..-.|.+|++|+|++++++.+.+.+..+.+ |. +++++|||||||||||++|+++|++++.+++.++.++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 445789999999999999999988876652 22 367899999999999999999999999999999998876
Q ss_pred ChHHHHHHHHhh--------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc-cc
Q 011664 262 DDADLKSLLLQT--------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ-AL 332 (480)
Q Consensus 262 ~~~~l~~l~~~~--------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~-aL 332 (480)
....+..+.... ..+.||+|||+|.+... ........|++.++. ....+|+++|.+..+++ .|
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-~d~~~~~aL~~~l~~-------~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-EDRGGARAILELIKK-------AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-cchhHHHHHHHHHHc-------CCCCEEEeccCccccchhhH
Confidence 655555554322 25789999999998642 222345667776652 22346778898888887 56
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhC
Q 011664 333 LRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNG 378 (480)
Q Consensus 333 lrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~ 378 (480)
++ |+ ..|.|+.|+.++...+++..+...+..+.+++ +.|++.+
T Consensus 149 rs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s 192 (482)
T PRK04195 149 RN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS 192 (482)
T ss_pred hc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 55 55 68999999999999999998876666555433 4555443
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=161.32 Aligned_cols=161 Identities=16% Similarity=0.317 Sum_probs=119.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+.+.|...+.. | ..+..+||+||||||||++|+++|+.+++
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 688999999999999887765431 1 13456999999999999999999998865
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++...-.+-..++.+.... ....|+||||+|.+. ....+.||..|+.- ..
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----~~A~NALLKtLEEP-----p~ 150 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----DQSFNALLKTLEEP-----PA 150 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----HHHHHHHHHHhhcC-----CC
Confidence 35555554333344555554322 245699999999883 23467778777532 45
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
..++|++|+.+..|.+++++ |+. ++.|..++.++....++..+...+..+.++
T Consensus 151 ~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e 203 (484)
T PRK14956 151 HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQE 203 (484)
T ss_pred ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 67888899999999999999 994 789999998888888888877666555443
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.6e-15 Score=165.86 Aligned_cols=161 Identities=15% Similarity=0.292 Sum_probs=123.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+. +...+..|||+||+|||||++++++|+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 57899999999999998876543 1124567999999999999999999998754
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.++-.+-.+++.++... ....|+||||+|.+. ....+.||..|+.- ..
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----~~A~NALLKtLEEP-----P~ 148 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----NHAFNAMLKTLEEP-----PP 148 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----HHHHHHHHHHHHhc-----CC
Confidence 45666655444455667666542 245799999999883 23457788877542 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
..+||++||.+..|.+.+++ |+ .++.|..++.++....++..++.++..+.++
T Consensus 149 ~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e 201 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ 201 (830)
T ss_pred CeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 67889999999999999999 99 5999999999999988988887666655543
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=8.2e-16 Score=166.12 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=133.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+.. | ..+..+||+||+|||||++|+++|+.+++
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 688999999999999988765541 1 24568999999999999999999998865
Q ss_pred ---------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccc
Q 011664 251 ---------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN 309 (480)
Q Consensus 251 ---------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~ 309 (480)
+++.++.++-.+-.+++.++... ....|+||||+|.+. ....+.||..|+.-
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----~~AaNALLKTLEEP-- 151 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----NHAFNAMLKTLEEP-- 151 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----HHHHHHHHHhhccC--
Confidence 45666655444555677766432 245799999999883 23457788877542
Q ss_pred cccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHH
Q 011664 310 SCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 310 ~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ 388 (480)
....+||++||.+..|.+.+++ |+ .++.|..++.++..+.++.++...+....++. +.|+.. .+-++.+..+
T Consensus 152 ---P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~-A~Gs~RdALs 224 (700)
T PRK12323 152 ---PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA-AQGSMRDALS 224 (700)
T ss_pred ---CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHH
Confidence 4567889999999999999999 99 59999999999998888888876666655443 344443 3555555555
Q ss_pred HHH
Q 011664 389 LMI 391 (480)
Q Consensus 389 ll~ 391 (480)
++.
T Consensus 225 LLd 227 (700)
T PRK12323 225 LTD 227 (700)
T ss_pred HHH
Confidence 443
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.5e-15 Score=155.80 Aligned_cols=181 Identities=15% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.+...+.. | ..+..+||+||||||||++|+++|+.+.+
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 578999999999999887754431 1 24567999999999999999999998753
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+.-..-..++.++... ....|++|||+|.+. ....+.||..++.. +.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----~~a~naLLk~lEe~-----~~ 148 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----RHSFNALLKTLEEP-----PQ 148 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----HHHHHHHHHHHhcC-----CC
Confidence 34445443323334466655432 234699999999873 22345677777542 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~ 391 (480)
...+|++|+.++.+.+++++ |+ ..++|++++.++...++...+...+..+.++. +.++..+ +-++.++.+++.
T Consensus 149 ~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s-~G~~R~al~~l~ 222 (363)
T PRK14961 149 HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA-HGSMRDALNLLE 222 (363)
T ss_pred CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 56677888888899999998 88 58999999999999999888776665555543 4455444 445555555443
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=1.3e-15 Score=148.05 Aligned_cols=173 Identities=10% Similarity=0.147 Sum_probs=111.3
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
++..++.+||+.++.++.. ....+.. .+.. .....++||||||||||+|++|+|+++ +....++++
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRK------NFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHH------Hhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 4455778999998766422 1111111 1111 123358999999999999999999976 456666666
Q ss_pred CCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC-CCccCc---cccc
Q 011664 258 SRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKDHVD---QALL 333 (480)
Q Consensus 258 s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~~LD---~aLl 333 (480)
+... ......+....+..+|+|||++.+.+...... .+++.++.... .+..++|+|+| .|..++ |+|.
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~---~l~~l~n~~~~---~~~~illits~~~p~~l~~~~~~L~ 147 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIGNEEWEL---AIFDLFNRIKE---QGKTLLLISADCSPHALSIKLPDLA 147 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcCChHHHH---HHHHHHHHHHH---cCCcEEEEeCCCChHHccccchhHH
Confidence 4321 11223444556778999999998865443333 34444444333 23455565554 566654 8999
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHH
Q 011664 334 RPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVE 372 (480)
Q Consensus 334 rpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~ 372 (480)
+..+.+..+.++.|+.+++.+++++.+...+..+.+++-
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~ 186 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVA 186 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 933335789999999999999999888766666666553
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.6e-15 Score=152.49 Aligned_cols=150 Identities=20% Similarity=0.326 Sum_probs=109.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA 264 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~ 264 (480)
+|.++++++|++.+...-. -+...+.. ..-.+.+|||||||||||+|+.||+..+.+|..++... .+-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~-~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGK-PLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCCc-hHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 6889999999987664311 11122221 12347999999999999999999999999999998642 3466
Q ss_pred HHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEe-c-CCCccCcccccCCC
Q 011664 265 DLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT-M-NSKDHVDQALLRPG 336 (480)
Q Consensus 265 ~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t-T-N~~~~LD~aLlrpG 336 (480)
+++.++.++ ....|||||||+.+- +. ....||-.|+ .+.+++|+| | |.--.|.+||++
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn--K~---QQD~lLp~vE-------~G~iilIGATTENPsF~ln~ALlS-- 153 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFN--KA---QQDALLPHVE-------NGTIILIGATTENPSFELNPALLS-- 153 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcC--hh---hhhhhhhhhc-------CCeEEEEeccCCCCCeeecHHHhh--
Confidence 788887554 246899999999883 22 2234555552 345667764 4 555789999999
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 337 RIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 337 Rfd~~I~~~~p~~~~r~~il~~~l 360 (480)
|. ++.++.+.+.++..+++++-+
T Consensus 154 R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 154 RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hh-heeeeecCCHHHHHHHHHHHH
Confidence 88 588999999999999888844
No 63
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=163.79 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=131.3
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------hHHHHHHHHhh--cCCcEEEEecccccccCcc
Q 011664 221 RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------DADLKSLLLQT--TSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~ 292 (480)
+...-.+||+|+||||||++++++|.++|.+++.++|.++.. +..+...|.++ .+|+|||+-++|.+..+..
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 334457999999999999999999999999999999987764 44566777544 5899999999998875544
Q ss_pred cccc------hhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCC
Q 011664 293 AAVS------LSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHK 366 (480)
Q Consensus 293 ~~~~------ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~ 366 (480)
+... +..++. .|.... .....++|+||+..+.+++.+++ -|-..|.+|.|+.++|.+|++.|+......
T Consensus 508 gged~rl~~~i~~~ls-~e~~~~--~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 508 GGEDARLLKVIRHLLS-NEDFKF--SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred CchhHHHHHHHHHHHh-cccccC--CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 3321 112222 233332 25678899999999999999998 888899999999999999999998755443
Q ss_pred CchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 367 LFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 367 l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
-......++..+.|||.+|+..++...
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 334557899999999999999998543
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.3e-15 Score=162.95 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=131.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~----~-------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALE----R-------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 57899999999999888876554 1 2 23568999999999999999999998865
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.++-.+-.+++.++... ....|++|||+|.+.. ...+.|+..|+.. .+
T Consensus 78 C~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----~A~NALLKtLEEP-----P~ 147 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----HSFNALLKTLEEP-----PE 147 (702)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----HHHHHHHHHHhcC-----CC
Confidence 56666665444555677766433 2457999999998832 3456777777642 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
...+|++|+.+..+.+.+++ |+ .+++|..++.++....+...+...+....++. ..++... +-+..++.+++
T Consensus 148 ~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S-~GdLRdALnLL 220 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA-QGSLRDALSLT 220 (702)
T ss_pred CcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 56788888888899899988 88 58999999999998888888877666655443 3444443 33555544443
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=5.2e-15 Score=150.02 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=113.1
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
..-.|.+|++++|++++++.++..+. . | ..+..+||+||||+|||++++++|++++.+++.++++. .
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~ 79 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C 79 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c
Confidence 34578999999999999998876553 1 2 23557778999999999999999999999999999887 2
Q ss_pred ChHHHHHHH---H-hh---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccC
Q 011664 262 DDADLKSLL---L-QT---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLR 334 (480)
Q Consensus 262 ~~~~l~~l~---~-~~---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlr 334 (480)
....++..+ . .. ..+.||+|||+|.+... .....|...++.. ..+..+|+|||.+..+++++++
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----~~~~~L~~~le~~-----~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 80 RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----DAQRHLRSFMEAY-----SKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----HHHHHHHHHHHhc-----CCCceEEEEcCChhhchHHHHh
Confidence 222232222 1 11 35789999999987321 1223344445443 2356788899999999999999
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 335 PGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 335 pGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
|+. .+.++.|+.+++..+++.++
T Consensus 151 --R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 151 --RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred --hce-EEEeCCCCHHHHHHHHHHHH
Confidence 995 78999999999988776643
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=3.6e-15 Score=151.87 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=115.9
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEe
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVD 256 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~ 256 (480)
...+|.+|++++|++++.+.|...+. . + .. ..+|||||||||||++|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 34578999999999998887765332 1 1 12 2599999999999999999999872 2466677
Q ss_pred CCCcCChHHHHHHH---Hhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 257 LSRVADDADLKSLL---LQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 257 ~s~~~~~~~l~~l~---~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
.++..+-..++..+ .+. ..+.|++|||+|.+.. .....|+..|+... ....+|++||.+..
T Consensus 72 ~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----~aq~aL~~~lE~~~-----~~t~~il~~n~~~~ 141 (319)
T PLN03025 72 ASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----GAQQALRRTMEIYS-----NTTRFALACNTSSK 141 (319)
T ss_pred ccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----HHHHHHHHHHhccc-----CCceEEEEeCCccc
Confidence 66655544455443 222 2357999999999842 22355666665322 33457788898889
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
+.++|++ |+ ..++|+.|+.++....++..+..++..+.+
T Consensus 142 i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~ 180 (319)
T PLN03025 142 IIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVP 180 (319)
T ss_pred cchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999 87 489999999999988888877665554443
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7.5e-15 Score=157.28 Aligned_cols=181 Identities=14% Similarity=0.226 Sum_probs=130.2
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------- 250 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------- 250 (480)
-+|.+|++++|++.+.+.+...+.. | ..+.++||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 3689999999999999877754321 1 23568999999999999999999998754
Q ss_pred ---------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccc
Q 011664 251 ---------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN 309 (480)
Q Consensus 251 ---------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~ 309 (480)
+++.++..+-.+-.+++.++... ....|++|||+|.+. ....+.|+..|+.-
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----~~a~naLLk~LEep-- 155 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----KGAFNALLKTLEEP-- 155 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----HHHHHHHHHHHhhc--
Confidence 34455554434456677776543 245799999999873 23456777777532
Q ss_pred cccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHH
Q 011664 310 SCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 310 ~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ 388 (480)
....++|++|+.++.+.+++++ |+ .+++|..++.++...+++..+...+....++. +.++..+ +-+..++.+
T Consensus 156 ---p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-~GslR~al~ 228 (507)
T PRK06645 156 ---PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS-EGSARDAVS 228 (507)
T ss_pred ---CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHH
Confidence 4567788888888999999998 88 58999999999999999998877766555443 3444443 334444444
Q ss_pred HH
Q 011664 389 LM 390 (480)
Q Consensus 389 ll 390 (480)
++
T Consensus 229 ~L 230 (507)
T PRK06645 229 IL 230 (507)
T ss_pred HH
Confidence 43
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.1e-15 Score=156.99 Aligned_cols=180 Identities=16% Similarity=0.201 Sum_probs=134.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---------------- 248 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------------- 248 (480)
.|.+|++|+|++.+++.+...+.. | ..+.++||+||||||||++|+++|+.+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 578999999999988877644321 2 246689999999999999999999854
Q ss_pred --------CCcEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 249 --------SYDVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 249 --------~~~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+.+++.++.++-.+-.+++.++... ....|++|||+|.+. ....+.|+..|+.- .+
T Consensus 76 C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----~~A~NaLLK~LEeP-----p~ 145 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----NSAFNALLKTLEEP-----AP 145 (491)
T ss_pred HHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----HHHHHHHHHHHhCC-----CC
Confidence 2357788877666667787776543 245799999999873 23457788887643 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..+.+.+++ |+ ..++|..++.++....+...+...+..+.++. +.++... +-+..++.+++
T Consensus 146 ~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s-~GslR~alslL 218 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS-SGSMRNALFLL 218 (491)
T ss_pred CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 67788888888899999999 88 57999999999999999988887777666544 3444443 44555554444
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.1e-15 Score=158.63 Aligned_cols=160 Identities=16% Similarity=0.277 Sum_probs=121.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+.. + ..+..+||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 578999999999999988865532 1 23557999999999999999999998854
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.++-.+-.+++.++... ....|++|||+|.+.. ...+.||..|+.. ++
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----~a~naLLk~LEep-----p~ 148 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----HSFNALLKTLEEP-----PS 148 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----HHHHHHHHHHhcc-----CC
Confidence 26777765555556677766432 2347999999998842 3456788777643 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
..++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...+....+
T Consensus 149 ~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~ 200 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFEN 200 (509)
T ss_pred CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 57788888889999888998 88 588999999888877777777766655543
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.61 E-value=1.4e-14 Score=149.01 Aligned_cols=180 Identities=19% Similarity=0.324 Sum_probs=128.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--------------- 249 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--------------- 249 (480)
+|.+|++++|++++++.+.+.+.. | ..+..+|||||||+|||++|+++|+.+.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 678999999999999988875532 2 2456899999999999999999998763
Q ss_pred ---------CcEEEEeCCCcCChHHHHHHHHhhc------CCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 250 ---------YDVYDVDLSRVADDADLKSLLLQTT------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 250 ---------~~~~~i~~s~~~~~~~l~~l~~~~~------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
.+++.++.....+...++.++.... .+.|++|||+|.+. ....+.|+..++.. ..
T Consensus 77 c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----~~~~~~Ll~~le~~-----~~ 146 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----KSAFNALLKTLEEP-----PE 146 (355)
T ss_pred HHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----HHHHHHHHHHHhCC-----cc
Confidence 2355555543333344666664432 34699999999873 23456777777542 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++||.++.+.+++++ |+ ..+++++|+.++...++..++...+..+.++. ..++... +-++..+.+.+
T Consensus 147 ~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-~g~~~~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA-DGSLRDALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCChHHHHHHH
Confidence 56778888889999999998 88 47899999999999999988877666665443 3444443 33454444443
No 71
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=1.2e-14 Score=163.32 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=151.1
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHH----
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADL---- 266 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l---- 266 (480)
+..|++++|+.|.+.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999998877644322 11123468999999999999999999999999999998876654433
Q ss_pred -----------HHHHHhhc-CCcEEEEecccccccCcccccchhhhhhhccccccc----------ccCCceEEEEecCC
Q 011664 267 -----------KSLLLQTT-SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----------CCFEERVMVFTMNS 324 (480)
Q Consensus 267 -----------~~l~~~~~-~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----------~~~~~~ivI~tTN~ 324 (480)
.+.+.... ...||+|||||.+..... ....+.|+..+|.-.+. ..-+++++|+|+|.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~ 474 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS 474 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC
Confidence 22233322 346999999999875422 23457788888742110 12357788899998
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHH--HhCCCCCHHHHHHHHHH-hhhcHHHHH
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIF--QNGSSLSPAEIGELMIA-NRNSPSRAL 401 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~--~~~~g~s~adI~~ll~~-a~~~~~~al 401 (480)
. .|+|||+. ||+ .|.++.++.++..+|+++|+... ..++.. ...-.++.+-+..++.. .+...+|.+
T Consensus 475 ~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k------~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 475 M-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPK------QIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred C-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHH------HHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 7 59999999 996 79999999999999999998421 111110 01123455555555433 224445666
Q ss_pred HHHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccC
Q 011664 402 KSVITALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLK 463 (480)
Q Consensus 402 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~ 463 (480)
++.++.+.++.- .+.+ .. +....-.|+.+++++.+|.-++.
T Consensus 545 eR~I~~i~r~~l-------~~~~-~~-------------~~~~~v~v~~~~~~~~lg~~~~~ 585 (784)
T PRK10787 545 EREISKLCRKAV-------KQLL-LD-------------KSLKHIEINGDNLHDYLGVQRFD 585 (784)
T ss_pred HHHHHHHHHHHH-------HHHH-hc-------------CCCceeeecHHHHHHHhCCCccc
Confidence 666655443300 0000 00 00112458889999998876653
No 72
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.7e-14 Score=157.08 Aligned_cols=180 Identities=14% Similarity=0.263 Sum_probs=131.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--------------- 249 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--------------- 249 (480)
.|.+|++++|++.+++.+...+.. ...+..||||||+|||||++|+.+|+.+.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 578999999999999888876542 12456899999999999999999998764
Q ss_pred ---------CcEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 250 ---------YDVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 250 ---------~~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
.+++.++.++-.+-..++.+.... ....|++|||+|.+. ....+.||..++.. +.
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----~~a~naLLKtLEep-----p~ 148 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----TGAFNALLKTLEEP-----PA 148 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----HHHHHHHHHHhcCC-----CC
Confidence 356677765544555677666543 245799999999883 23456788877643 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..+.+.+++ |+. .+.|+.|+.++....++..+...+..+.++. ..++... +-+..+..+++
T Consensus 149 ~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s-~G~~R~al~~L 221 (559)
T PRK05563 149 HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA-EGGMRDALSIL 221 (559)
T ss_pred CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 67888888889999999998 885 7899999999988888888876666665443 3444433 33444444433
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=2.6e-15 Score=168.66 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=113.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|..+++++|.++..+.+.+.+. ...+.+++|+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 45678999999888876664432 1235689999999999999999999976 778999
Q ss_pred EeCCCcCC--------hHHHHHHHHhh--cCCcEEEEecccccccCccc---ccchhhhhhhcccccccccCCceEEEEe
Q 011664 255 VDLSRVAD--------DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---AVSLSGVLNFMDGVLNSCCFEERVMVFT 321 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---~~~ls~lL~~ldg~~~~~~~~~~ivI~t 321 (480)
++++.+.. +..++.++... ..++||||||||.+.+.... ......+|. .... .+...+|++
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~---~~l~---~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK---PALS---SGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH---HHHh---CCCeEEEEe
Confidence 99766542 24577888654 45899999999999864321 122233332 1112 356778888
Q ss_pred cCCC-----ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 322 MNSK-----DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 322 TN~~-----~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
||.. ..+|+||.| ||+ .|+++.|+.+++.+|++....
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 8753 357999999 997 799999999999999986553
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.4e-14 Score=153.73 Aligned_cols=160 Identities=19% Similarity=0.340 Sum_probs=119.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.|...+.. + ..+..+|||||||||||++|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 588999999999998888765542 1 24556899999999999999999998743
Q ss_pred ---------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCc
Q 011664 251 ---------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEE 315 (480)
Q Consensus 251 ---------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~ 315 (480)
+++.++.+.-.+-..++.+.... ..+.||+|||+|.+. ...++.|+..|+.- ...
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----~~a~naLLk~LEep-----~~~ 146 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----KSAFNALLKTLEEP-----PEH 146 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----HHHHHHHHHHHHhC-----CCC
Confidence 25666655433444455543221 356799999999762 23456777777542 345
Q ss_pred eEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 316 RVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 316 ~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
.++|++||.+..+.+++.+ |+. +++|+.++.++....++..+...+....+
T Consensus 147 t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~ 197 (504)
T PRK14963 147 VIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEP 197 (504)
T ss_pred EEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 6788888999999999998 885 89999999999999998888766655544
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.1e-14 Score=158.91 Aligned_cols=180 Identities=15% Similarity=0.249 Sum_probs=130.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+.. ...+.+|||+||||||||++|+++|+.+++
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 578999999999999988876542 124568999999999999999999998653
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++...-.+-..++.++... ....|+||||+|.+. ....+.||..|+.. .+
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----~~A~NALLKtLEEP-----p~ 148 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----KSAFNAMLKTLEEP-----PE 148 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----HHHHHHHHHHHHhC-----CC
Confidence 23455544444455677776432 245799999999773 23456788887643 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++||.+..+.+.+++ |+ ..+.|+.++.++....+...+...+..+.++. ..|+... +-+..++.+++
T Consensus 149 ~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLL 221 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA-AGSMRDALSLL 221 (709)
T ss_pred CcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHH
Confidence 56788888999999999987 98 58899999999999999988887776665543 3444333 45555555554
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.7e-14 Score=160.40 Aligned_cols=180 Identities=17% Similarity=0.237 Sum_probs=126.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc-------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------- 251 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------- 251 (480)
+|.+|++|+|++.+++.|+..+. . | ..+..|||+||||||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~----~-------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 57899999999999988775443 1 1 245678999999999999999999988653
Q ss_pred -----------EEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 252 -----------VYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 252 -----------~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
++.++..+-.+-..++.+.... ....|+||||+|.+. ....+.||..|+.- ..
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----~eAqNALLKtLEEP-----P~ 148 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----RSSFNALLKTLEEP-----PE 148 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----HHHHHHHHHHHhcc-----CC
Confidence 2333333223334456555322 235799999999883 34567788888642 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..|.+.+++ |+ .++.|..++.++....++..+...+..+.++. ..|+... +-++.++..+|
T Consensus 149 ~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S-~Gd~R~ALnLL 221 (944)
T PRK14949 149 HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA-NGSMRDALSLT 221 (944)
T ss_pred CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 56677778888889999999 88 68999999999988888888776555555433 3444433 44455554444
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.4e-14 Score=152.62 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=110.2
Q ss_pred CCCCCccccccChHHHHH---HHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 184 THPSTFDTISMETDLKNR---VKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~---l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
-+|.+|++++|++.+... +...+. . + ...+++|+||||||||++|+++|+.++.+++.++.+..
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~----~-------~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE----A-------G--RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH----c-------C--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 367899999999988655 544332 1 1 23479999999999999999999999999999987643
Q ss_pred CChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec--CCCccCcccc
Q 011664 261 ADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM--NSKDHVDQAL 332 (480)
Q Consensus 261 ~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT--N~~~~LD~aL 332 (480)
+...++.++... ..+.||||||+|.+.. .....|+..++. ...++|++| |....++++|
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----~~q~~LL~~le~-------~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----AQQDALLPHVED-------GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----HHHHHHHHHhhc-------CcEEEEEeCCCChhhhccHHH
Confidence 344555555433 2678999999998742 223456665532 234556544 3456899999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 011664 333 LRPGRIDVHIHFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 333 lrpGRfd~~I~~~~p~~~~r~~il~~~l~~ 362 (480)
++ |+ ..+.|++++.++...+++..+..
T Consensus 140 ~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 140 LS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred hc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 99 98 68999999999999999887754
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2e-14 Score=157.29 Aligned_cols=160 Identities=19% Similarity=0.322 Sum_probs=120.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 578999999999999887755431 1 24567999999999999999999998865
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.++-.+-.+++.+.... ....|++|||+|.+. ....+.||..|+.- .+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----~~a~NALLKtLEEP-----p~ 148 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----RHSFNALLKTLEEP-----PE 148 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----HHHHHHHHHHHHcC-----CC
Confidence 34555554333445566665432 245799999999883 34567788887642 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
..++|++|+.+..|.+.+++ |+ ..++|..++.++....+...+...+....+
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~ 200 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEP 200 (647)
T ss_pred CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 56788888889999999999 97 799999999999988888887655555443
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=1.2e-14 Score=139.85 Aligned_cols=186 Identities=14% Similarity=0.171 Sum_probs=112.0
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+...+.+|++.+.. ..+...+.+..++. ...+++++|+||||||||++|+++++++ +.++++++++
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 7 GLPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 34455678888732 22233333333322 1235689999999999999999999876 5678889887
Q ss_pred CcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC-CCccCc---ccccC
Q 011664 259 RVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKDHVD---QALLR 334 (480)
Q Consensus 259 ~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~~LD---~aLlr 334 (480)
.+... ....+.......+|+|||+|.+...... ...+...++.... .+. .+|+|++ .+..++ +.|.+
T Consensus 76 ~~~~~--~~~~~~~~~~~~lLvIDdi~~l~~~~~~---~~~L~~~l~~~~~---~~~-~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 76 ELAQA--DPEVLEGLEQADLVCLDDVEAIAGQPEW---QEALFHLYNRVRE---AGG-RLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred HHHHh--HHHHHhhcccCCEEEEeChhhhcCChHH---HHHHHHHHHHHHH---cCC-eEEEECCCChHHCCcccHHHHH
Confidence 66432 1233443445679999999987432211 2344444444332 223 3455554 444432 67777
Q ss_pred CCce--eEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 335 PGRI--DVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 335 pGRf--d~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
|+ ..+|.+|+|+.+++..+++.++...+..+.++. +.|+.. -+-++.++.+++
T Consensus 147 --r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l 202 (226)
T TIGR03420 147 --RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALL 202 (226)
T ss_pred --HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 76 478999999999999999887654444444433 333332 233444444443
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.4e-14 Score=154.43 Aligned_cols=162 Identities=19% Similarity=0.328 Sum_probs=121.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|+..+.. | ..+..|||+||+|||||++|+++|+.+.+
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 588999999999999988765541 2 24557999999999999999999987653
Q ss_pred ------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 251 ------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 251 ------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
+++.++.+...+-.+++.+.... ....|++|||+|.+. ....+.||..|+..
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----~~A~NALLK~LEEp----- 145 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----TAGFNALLKIVEEP----- 145 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----HHHHHHHHHHHhcC-----
Confidence 35556554444445555554322 245799999999883 23457788887643
Q ss_pred CCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 313 FEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 313 ~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
....++|++|+.+..|.+++++ |+ .+++|..++.++....+..++...+..+.++.
T Consensus 146 p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~a 201 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAV 201 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4567888888888999999999 86 58999999999988888888877776665544
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.58 E-value=1.4e-14 Score=152.21 Aligned_cols=193 Identities=14% Similarity=0.209 Sum_probs=125.6
Q ss_pred CCCCCCCccc-cccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEE
Q 011664 182 PFTHPSTFDT-ISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDV 255 (480)
Q Consensus 182 ~~~~~~~~~~-i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i 255 (480)
++.+..+|++ ++|..... ....+..+...+ +. ...+++||||||||||+|++|+++++ +..++++
T Consensus 102 ~l~~~~tfd~fi~g~~n~~--a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNRL--AHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCCcccccccCCcHHH--HHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4556678999 55654422 222233332221 21 23479999999999999999999987 5778888
Q ss_pred eCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc-
Q 011664 256 DLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH- 327 (480)
Q Consensus 256 ~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~- 327 (480)
++.++... ..+..+........+|+|||+|.+.+... +..+|+..++.+.. .+..+||.++..|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~---~~~~l~~~~n~~~~---~~~~iiits~~~p~~l 246 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER---TQEEFFHTFNALHE---NGKQIVLTSDRPPKEL 246 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH---HHHHHHHHHHHHHH---CCCCEEEecCCCHHHH
Confidence 87654321 01112222334578999999998864332 23456666655544 233444444445654
Q ss_pred --CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHH
Q 011664 328 --VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 328 --LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~ 392 (480)
+++.|++ ||. ..++++.|+.++|..|++..+...+..+.+++ +.|+... .-+..++...+..
T Consensus 247 ~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~ 313 (405)
T TIGR00362 247 PGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNR 313 (405)
T ss_pred hhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 5688998 996 58999999999999999999988777777765 4556544 5566666665543
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3e-14 Score=154.10 Aligned_cols=180 Identities=16% Similarity=0.255 Sum_probs=127.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+++.+...+.. | ..++++||+||||||||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 688999999999999888764431 1 23568999999999999999999997642
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+...+-.+++.+.... ....|++|||+|.+.. ...+.|+..|+.. +.
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----~A~NaLLKtLEEP-----p~ 148 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----SAWNALLKTLEEP-----PK 148 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----HHHHHHHHHHHhC-----CC
Confidence 45556654434445566665432 2346999999998732 2346777777642 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..|.+++++ |+. .++|+.++.++....+...+...+....++. ..++..+ +-++.++..++
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS-~GdlR~AlnlL 221 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA-DGSLRDGLSIL 221 (605)
T ss_pred cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHH
Confidence 67788888889999999999 885 8999999999988888887766655554433 3444433 33444443333
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.9e-14 Score=154.62 Aligned_cols=180 Identities=16% Similarity=0.235 Sum_probs=128.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+++.|...+.. ...+..|||+||+|||||++|+++|+.+++
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 578999999999988877764431 123557999999999999999999998764
Q ss_pred ---------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccc
Q 011664 251 ---------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN 309 (480)
Q Consensus 251 ---------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~ 309 (480)
+++.++..+-.+-.+++.++... ....|++|||+|.+. ....+.||..|+.-
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----~~a~NaLLKtLEEP-- 151 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----NTAFNAMLKTLEEP-- 151 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----HHHHHHHHHhcccC--
Confidence 34555544434445677776542 134699999999884 23356677777542
Q ss_pred cccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHH
Q 011664 310 SCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 310 ~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ 388 (480)
.+..++|++|+.+..+.+.+++ |+ .+++|..++.++....++..+...+....++. ..|+... +-+..++.+
T Consensus 152 ---P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s-~GslR~al~ 224 (618)
T PRK14951 152 ---PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA-RGSMRDALS 224 (618)
T ss_pred ---CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHH
Confidence 3456788888888889888998 88 69999999999988888888877766665543 3444433 334544444
Q ss_pred HH
Q 011664 389 LM 390 (480)
Q Consensus 389 ll 390 (480)
++
T Consensus 225 lL 226 (618)
T PRK14951 225 LT 226 (618)
T ss_pred HH
Confidence 43
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.8e-14 Score=145.10 Aligned_cols=167 Identities=17% Similarity=0.314 Sum_probs=119.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC------------cE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------DV 252 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------~~ 252 (480)
+|.+|++++|++.+++.+...+.. | ..+.++|||||||+|||++|+++|+.+.. ++
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 688999999999998887765542 2 24568999999999999999999998743 23
Q ss_pred EEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 253 YDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 253 ~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
+.++.....+...++.++... ..+.||+|||+|.+.. ...+.|+..++.. ....++|++|+.+.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----~~~~~ll~~le~~-----~~~~~~Il~~~~~~ 149 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----AAFNAFLKTLEEP-----PAHAIFILATTEKH 149 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----HHHHHHHHHHhCC-----CCceEEEEEeCCcc
Confidence 333333333345666666532 2457999999997742 2356677777542 33467777888889
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHH
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQ 376 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~ 376 (480)
.+.+++.+ |+. .++++.|+.++...++...+...+..+.++. +.++.
T Consensus 150 kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~ 197 (367)
T PRK14970 150 KIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQ 197 (367)
T ss_pred cCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999998 774 7899999999988888887776666555443 33443
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=154.67 Aligned_cols=180 Identities=14% Similarity=0.245 Sum_probs=127.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 478999999999999987765542 124567999999999999999999998854
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+.-.+-..++.++... ....|++|||+|.+. ....+.||..|+.. .+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----~~a~naLLK~LEep-----p~ 148 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----KSAFNAMLKTLEEP-----PE 148 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----HHHHHHHHHHHhCC-----CC
Confidence 34555554333445577666433 234799999999883 23456788887653 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..+.+.+++ |+ ..++|..++.++....+...+...+....++. ..++... +-++.++.+++
T Consensus 149 ~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s-~Gslr~al~ll 221 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA-AGSMRDALSLL 221 (527)
T ss_pred CEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 56788888888888888888 88 58999999999988888888766665554432 3444433 44444444443
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.3e-14 Score=155.57 Aligned_cols=180 Identities=16% Similarity=0.273 Sum_probs=127.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc-------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------- 251 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------- 251 (480)
+|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.+.+.
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 688999999999999888876642 1245689999999999999999999877442
Q ss_pred --------EEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceE
Q 011664 252 --------VYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERV 317 (480)
Q Consensus 252 --------~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~i 317 (480)
++.++...-.+-..++.+.... ....|++|||+|.+.. ...+.||..|+.. +...+
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----~A~NALLKtLEEP-----P~~ti 150 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----SAFNALLKTLEEP-----PKHVI 150 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----HHHHHHHHHhhcC-----CCceE
Confidence 2333332222344566665433 2457999999998742 3456788877643 34677
Q ss_pred EEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHH
Q 011664 318 MVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 318 vI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll 390 (480)
+|++|+.++.|.+++++ |+. +++|.+++.++....+...+...+.....+ +..++... +-+..++..++
T Consensus 151 fILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS-~GslR~AlslL 220 (725)
T PRK07133 151 FILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLS-SGSLRDALSIA 220 (725)
T ss_pred EEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 88888899999999999 985 899999999998888888776665555443 33444433 44444444433
No 87
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.7e-14 Score=151.92 Aligned_cols=179 Identities=23% Similarity=0.311 Sum_probs=143.9
Q ss_pred HhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC----C--hHHHHHHHH--hhcCCcEEEE
Q 011664 210 LKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA----D--DADLKSLLL--QTTSKSVILI 281 (480)
Q Consensus 210 l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~----~--~~~l~~l~~--~~~~~sII~I 281 (480)
+..+..+...+..++++++++||||||||++++++|++ +..+..++..... + +..++.+|. ....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 44567788899999999999999999999999999999 5555555544332 3 334556664 3457899999
Q ss_pred ecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHH
Q 011664 282 EDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTL 355 (480)
Q Consensus 282 DEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~i 355 (480)
||+|.+.+.+.. ....++++..||++.. .. .+++..||.+..+|+++++||||+..+.++.|+...+.++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~---~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKR---GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccC---Cc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999887665 2347889999999872 55 7777799999999999999999999999999999999888
Q ss_pred HHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 356 ASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 356 l~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+.............+...++..+.|++++++..++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~ 196 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEA 196 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHH
Confidence 88776544433345778999999999999999998654
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=4.3e-14 Score=147.48 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=123.2
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc----------------
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD---------------- 251 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~---------------- 251 (480)
.|++|+|++.+++.|+..+..... .+...+...+.++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999988775433 2333455567899999999999999999999876432
Q ss_pred -------EEEEeCCC-cCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceE
Q 011664 252 -------VYDVDLSR-VADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERV 317 (480)
Q Consensus 252 -------~~~i~~s~-~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~i 317 (480)
++.+.... ..+-.+++.++... ....|++|||+|.+.. ...+.||..|+.- ..+.+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----~aanaLLk~LEep-----~~~~~ 149 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----RAANALLKAVEEP-----PPRTV 149 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----HHHHHHHHHhhcC-----CCCCe
Confidence 33333321 23345577766543 2346999999999842 2346688887642 34566
Q ss_pred EEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHH
Q 011664 318 MVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAE 385 (480)
Q Consensus 318 vI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~ad 385 (480)
+|++|+.++.|.|++++ |+ ..++|+.|+.++..+.+....+ .. .+....++....|..+..
T Consensus 150 fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~---~~-~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDG---VD-PETARRAARASQGHIGRA 210 (394)
T ss_pred EEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcC---CC-HHHHHHHHHHcCCCHHHH
Confidence 77777779999999999 98 5999999999988777753322 11 233445665665554433
No 89
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.2e-14 Score=159.15 Aligned_cols=162 Identities=20% Similarity=0.316 Sum_probs=120.8
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------- 250 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------- 250 (480)
.+|.+|++|+|++.+++.|+..+.. | ..+..|||+||+|||||++|+++|+.+.+
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 3688999999999999887765531 1 23457999999999999999999998853
Q ss_pred -------------cEEEEeCCCcCChHHHHHHHHh------hcCCcEEEEecccccccCcccccchhhhhhhcccccccc
Q 011664 251 -------------DVYDVDLSRVADDADLKSLLLQ------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSC 311 (480)
Q Consensus 251 -------------~~~~i~~s~~~~~~~l~~l~~~------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~ 311 (480)
+++.++.....+-.+++.+... .....|+||||+|.+. ....+.||+.|+..
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----~~a~NaLLK~LEEp---- 147 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----PQGFNALLKIVEEP---- 147 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----HHHHHHHHHHHhCC----
Confidence 3455554443344555554322 1355799999999984 23456788888653
Q ss_pred cCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 312 CFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 312 ~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
....+||++|+.++.|-+.|++ |+ .+++|..++.++...++...+...+..+..+
T Consensus 148 -P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e 202 (824)
T PRK07764 148 -PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG 202 (824)
T ss_pred -CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3467888888888889999998 88 5899999999999888888887666655443
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.3e-14 Score=151.74 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=118.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+++.+...+.. | ..+..+||+||||||||++|+++|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 578999999999999887755431 1 23557999999999999999999997753
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++...-.+-.+++.++... ....|++|||+|.+. ....+.||..|+.. ++
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----~~a~naLLK~LEep-----p~ 148 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----KQSFNALLKTLEEP-----PE 148 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----HHHHHHHHHHHhcC-----CC
Confidence 45556654434444555555332 245799999999873 23456788887643 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
..++|++|+.+..+.+++++ |+ ..++|..++.++....+...+...+....++
T Consensus 149 ~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~ 201 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ 201 (546)
T ss_pred CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 56777777778888888988 88 6999999999998888888776665555443
No 91
>PRK08727 hypothetical protein; Validated
Probab=99.57 E-value=3.8e-14 Score=138.15 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=112.2
Q ss_pred CCCCCCCCccccccChH-HHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 181 VPFTHPSTFDTISMETD-LKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~-~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
++.....+|++.++.+. ....+. .... | .+...++||||+|||||+|++|+++++ +....+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~----~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQ----ALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHH----HHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 44556678999765554 222211 1111 1 133469999999999999999998764 66777777
Q ss_pred CCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec-CCCccC---cccc
Q 011664 257 LSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM-NSKDHV---DQAL 332 (480)
Q Consensus 257 ~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT-N~~~~L---D~aL 332 (480)
+.+.. ..+...+....+..+|+|||++.+.........+..+++. ... .+.-+|+|+ +.|..+ +|+|
T Consensus 77 ~~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~---~~~----~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 77 LQAAA--GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR---ARA----AGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred HHHhh--hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH---HHH----cCCeEEEECCCChhhhhhhhHHH
Confidence 65533 2344555666778899999999886544433333334433 322 223355554 467665 7999
Q ss_pred cCCCce--eEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHh
Q 011664 333 LRPGRI--DVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQN 377 (480)
Q Consensus 333 lrpGRf--d~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~ 377 (480)
.+ || ..++.++.|+.+++.++++......+..+.+++ +.|++.
T Consensus 148 ~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~ 193 (233)
T PRK08727 148 RS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTH 193 (233)
T ss_pred HH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 99 97 478999999999999999987765555555544 344443
No 92
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.57 E-value=1.6e-14 Score=153.91 Aligned_cols=193 Identities=15% Similarity=0.240 Sum_probs=125.6
Q ss_pred CCCCCCCCcccc-ccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEE
Q 011664 181 VPFTHPSTFDTI-SMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYD 254 (480)
Q Consensus 181 v~~~~~~~~~~i-~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~ 254 (480)
.++.+..+|++. .|... .. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..+++
T Consensus 113 ~~l~~~~tfd~fv~g~~n-~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~y 183 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSN-RL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVY 183 (450)
T ss_pred cCCCCCCcccccccCCCc-HH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 355667799995 45433 22 122222232221 222 2479999999999999999999987 566888
Q ss_pred EeCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 255 VDLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 255 i~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+++.++..+ .....+........+|+|||+|.+..... +..+|+..++.+.. .+..+||.++..|..
T Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~---~~~~l~~~~n~l~~---~~~~iiits~~~p~~ 257 (450)
T PRK00149 184 VTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER---TQEEFFHTFNALHE---AGKQIVLTSDRPPKE 257 (450)
T ss_pred EEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH---HHHHHHHHHHHHHH---CCCcEEEECCCCHHH
Confidence 887665321 11122333445788999999998864332 33456666665544 233444544455555
Q ss_pred ---CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHH
Q 011664 328 ---VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 328 ---LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~ 391 (480)
++++|++ ||. ..++++.|+.++|.+|++..+...+..+.+++ +.|+... +-+..++..++.
T Consensus 258 l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~ 324 (450)
T PRK00149 258 LPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALN 324 (450)
T ss_pred HHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHH
Confidence 6789998 996 68999999999999999999887777777766 4454443 555666655544
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=5e-14 Score=136.30 Aligned_cols=162 Identities=14% Similarity=0.179 Sum_probs=102.8
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
++...+.+||+..+..+ +.+...+..+.. +....++++|+||||||||+||+++++++ +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 45567788999763321 122222322221 22345689999999999999999999865 678888887
Q ss_pred CCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC---ccCcccccC
Q 011664 258 SRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK---DHVDQALLR 334 (480)
Q Consensus 258 s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~---~~LD~aLlr 334 (480)
...... +.......+|+|||+|.+.. . ....|+..++.... ....++|+|++.+ ..+.+.|++
T Consensus 79 ~~~~~~------~~~~~~~~~liiDdi~~l~~--~---~~~~L~~~~~~~~~---~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 79 ASPLLA------FDFDPEAELYAVDDVERLDD--A---QQIALFNLFNRVRA---HGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred HHhHHH------HhhcccCCEEEEeChhhcCc--h---HHHHHHHHHHHHHH---cCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 654321 23334678999999998732 1 22445555554433 2333456655532 235677777
Q ss_pred CCce--eEEEEcCCCCHHHHHHHHHHHhccCCCCCc
Q 011664 335 PGRI--DVHIHFPLCDFSSFKTLASSYLGLKDHKLF 368 (480)
Q Consensus 335 pGRf--d~~I~~~~p~~~~r~~il~~~l~~~~~~l~ 368 (480)
|| ...+++|+|+.+++..++..+....+..+.
T Consensus 145 --r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~ 178 (227)
T PRK08903 145 --RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA 178 (227)
T ss_pred --HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 77 479999999999888888766544443333
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8e-14 Score=149.25 Aligned_cols=180 Identities=14% Similarity=0.242 Sum_probs=126.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++++|++.+.+.+...+.. ...+..||||||||+|||++|+++|..+.+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 678999999999999888765531 124567999999999999999999998753
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+.-.+-..++.+.... ..+.|++|||+|.+. ....+.|+..++.. ..
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----~~a~naLLk~LEep-----p~ 148 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----KEAFNALLKTLEEP-----PP 148 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----HHHHHHHHHHHhcC-----CC
Confidence 34455554434444455554322 245799999999873 22346677777543 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.++.+.+++.+ |+. .+.|++++.++....+..++...+....++. +.++..+ +-+..++.+++
T Consensus 149 ~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s-~G~lr~al~~L 221 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS-EGGMRDAASLL 221 (486)
T ss_pred CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 56777778888889999998 885 7999999999999999988877666665543 3444443 33444443333
No 95
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.56 E-value=3.5e-14 Score=153.90 Aligned_cols=188 Identities=19% Similarity=0.246 Sum_probs=126.1
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEE
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVY 253 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~ 253 (480)
.+|.+|++++|.+...+.++..+. + +.+.++||+||||||||++|+++++++ +.+|+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~------------~-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC------------G-PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh------------C-CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 477899999999998888774321 1 234589999999999999999998642 36789
Q ss_pred EEeCCCc-CChHHHH-HH--------------H------------HhhcCCcEEEEecccccccCcccccchhhhhhhcc
Q 011664 254 DVDLSRV-ADDADLK-SL--------------L------------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD 305 (480)
Q Consensus 254 ~i~~s~~-~~~~~l~-~l--------------~------------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld 305 (480)
.++++.. .++..+. .+ | .......+|||||||.+.. ...+.|+..|+
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----~~q~~LL~~Le 200 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----VQMNKLLKVLE 200 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----HHHHHHHHHHH
Confidence 9998642 1111110 00 0 0122457999999998843 23344554442
Q ss_pred cc--------c----------------ccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 306 GV--------L----------------NSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 306 g~--------~----------------~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.- . .....+-++|++|||.|+.++|++++ |+. .|.|+.++.++...|++..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 201 DRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred hCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHH
Confidence 10 0 00011235666688899999999999 985 789999999999999999988
Q ss_pred cCCCCCchhHH-HHHHhCCCCCHHHHHHHHHHhh
Q 011664 362 LKDHKLFPQVE-EIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 362 ~~~~~l~~~i~-~l~~~~~g~s~adI~~ll~~a~ 394 (480)
..+..+.++.- .+...+ .++.++.++++.+.
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 77766666553 333322 36777777776543
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.56 E-value=4.2e-14 Score=138.05 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=104.9
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR 259 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~ 259 (480)
+.+..+||+.+-..+ +.....+..+... +....++||||||||||+|++++|+++ |..+.++++..
T Consensus 15 ~~~~~~fd~f~~~~n--~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGDN--DSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCcc--HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 445668988762222 1123333333211 123479999999999999999999865 45566776654
Q ss_pred cCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCc-eEEEEecCCCcc---CcccccCC
Q 011664 260 VADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEE-RVMVFTMNSKDH---VDQALLRP 335 (480)
Q Consensus 260 ~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~-~ivI~tTN~~~~---LD~aLlrp 335 (480)
... ....++....+..+|+|||++.+.........+..+++.+ .. .+. .+++.+++.|.. +.|+|++
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~---~e---~g~~~li~ts~~~p~~l~~~~~~L~S- 154 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRI---LE---SGRTRLLITGDRPPRQLNLGLPDLAS- 154 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHH---HH---cCCCeEEEeCCCChHHcCcccHHHHH-
Confidence 221 1122222233447999999998865443333344444433 22 222 455555566655 5799999
Q ss_pred Ccee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 336 GRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 336 GRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
|+. .++.+..|+.+++.++++......+..+.+++
T Consensus 155 -Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v 191 (235)
T PRK08084 155 -RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV 191 (235)
T ss_pred -HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 986 89999999999999999886655555555544
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.56 E-value=1.1e-13 Score=141.20 Aligned_cols=162 Identities=12% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEeC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVDL 257 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~~ 257 (480)
...|.+|++++|.+++++.+...+. . +. ..++|||||||||||++|+++|+++. .++..+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3478899999999998888776443 1 11 12699999999999999999999874 34677777
Q ss_pred CCcCCh--------------------------HHHHHHHHhh-------cCCcEEEEecccccccCcccccchhhhhhhc
Q 011664 258 SRVADD--------------------------ADLKSLLLQT-------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFM 304 (480)
Q Consensus 258 s~~~~~--------------------------~~l~~l~~~~-------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~l 304 (480)
+++... ..++.+.... ..+.+|+|||+|.+.. .....|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----~~~~~L~~~l 149 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----DAQQALRRIM 149 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----HHHHHHHHHH
Confidence 653210 1122222111 2457999999998732 1223455555
Q ss_pred ccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 305 DGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 305 dg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
+... ....+|++|+.+..+.++|.+ |+ ..+++++|+.++...+++..+...+..+.++
T Consensus 150 e~~~-----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 207 (337)
T PRK12402 150 EQYS-----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD 207 (337)
T ss_pred Hhcc-----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 4332 234466677777788888888 76 5799999999999999998887666655543
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.2e-14 Score=151.37 Aligned_cols=162 Identities=17% Similarity=0.262 Sum_probs=118.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc-------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------- 251 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------- 251 (480)
.|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 688999999999998887765531 1 224589999999999999999999988642
Q ss_pred -----------EEEEeCCCcCChHHHHHHHHh------hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 252 -----------VYDVDLSRVADDADLKSLLLQ------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 252 -----------~~~i~~s~~~~~~~l~~l~~~------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
++.++...-.+-..++.+... .....||||||+|.+. ....+.|+..|+.- ..
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----~~a~naLLk~LEEP-----~~ 148 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----REAFNALLKTLEEP-----PA 148 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----HHHHHHHHHHhhcc-----CC
Confidence 555654332333444443321 1245799999999883 23357778777542 24
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
..++|++||.+..+.+.+++ |+. +++|+.++.++...++...+...+..+..+.
T Consensus 149 ~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~ea 202 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAA 202 (624)
T ss_pred CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 57788889989999989998 884 7899999999998888887766665555443
No 99
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.55 E-value=1.9e-14 Score=160.75 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=110.9
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEeC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVDL 257 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~~ 257 (480)
.++.++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 467788888777777764432 134578999999999999999999764 566777765
Q ss_pred CCcC------C--hHHHHHHHHh--hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc-
Q 011664 258 SRVA------D--DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD- 326 (480)
Q Consensus 258 s~~~------~--~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~- 326 (480)
+.+. + +..++.++.. ...++||||||||.+++.+........+.|.+..+.. .....+|++||.++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---~g~i~vIgATt~~E~ 327 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQEF 327 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---CCCeEEEecCChHHH
Confidence 5433 1 2335566543 3468899999999998655322222334444444444 45677888888764
Q ss_pred ----cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 327 ----HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 327 ----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
..|+||.| ||+ .|+++.|+.+++..|++.+..
T Consensus 328 ~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 328 SNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred HHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 57999999 996 799999999999999987654
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7e-14 Score=152.83 Aligned_cols=161 Identities=15% Similarity=0.298 Sum_probs=121.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.|...+.. | ..+..||||||||||||++|+++|+.+.+
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 578999999999999888865542 1 24668999999999999999999998753
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++..+-.+-.+++.+.... ....|++|||+|.+. ....+.|+..|+.- .+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----~~a~naLLk~LEep-----p~ 148 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----TNAFNALLKTLEEP-----PP 148 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----HHHHHHHHHHHHcC-----CC
Confidence 25556554444445666665432 234699999999884 23457788888643 35
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ 370 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~ 370 (480)
..++|++||.+..|.+.+++ |+. +++|..++.++....+..++...+..+..+
T Consensus 149 ~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~ 201 (576)
T PRK14965 149 HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDA 201 (576)
T ss_pred CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 67888888999999999999 884 899999999888888888777666555443
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=2.8e-14 Score=140.39 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=118.5
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC------cEEEE
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------DVYDV 255 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------~~~~i 255 (480)
....|.+|++++|++.+.+.++..+.. .--..+|||||||||||+.|+++|+++.. .+...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 455789999999999999999876653 01126999999999999999999999865 24445
Q ss_pred eCCCcCChHHHHHH---HHhh------------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE
Q 011664 256 DLSRVADDADLKSL---LLQT------------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 256 ~~s~~~~~~~l~~l---~~~~------------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
+.|...+-+-++.- |++. ....||+|||.|.+. ....+.|...|+... ....+|+
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~s-----~~trFiL 164 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDFS-----RTTRFIL 164 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhccc-----cceEEEE
Confidence 55554443222211 2211 123799999999884 345577888888742 4577888
Q ss_pred ecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 321 TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 321 tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
.||..+.|.+.+.+ |+. .+.|+....+.-...++.+...++.+.+++.
T Consensus 165 Icnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a 212 (346)
T KOG0989|consen 165 ICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA 212 (346)
T ss_pred EcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 99999999999999 996 6777777776666667777776776666543
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.5e-13 Score=146.18 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=120.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.+...+.. ...+..+|||||||+|||++|+++|+.+.+
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 578999999999998877765531 124568999999999999999999997643
Q ss_pred -----------cEEEEeCCCcCChHHHHHHHH------hhcCCcEEEEecccccccCcccccchhhhhhhcccccccccC
Q 011664 251 -----------DVYDVDLSRVADDADLKSLLL------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCF 313 (480)
Q Consensus 251 -----------~~~~i~~s~~~~~~~l~~l~~------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~ 313 (480)
+++.++.....+-..++.+.. ....+.|++|||+|.+.. ...+.|+..|+.- .
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----~~~n~LLk~lEep-----~ 149 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----EAFNSLLKTLEEP-----P 149 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----HHHHHHHHHhhcC-----C
Confidence 344555433333344444321 124678999999998842 2346677777642 3
Q ss_pred CceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhC
Q 011664 314 EERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNG 378 (480)
Q Consensus 314 ~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~ 378 (480)
+..++|++||.+..|.+++++ |+. .++|+.++.++....+...+...+.....+. +.|+...
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s 212 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA 212 (451)
T ss_pred CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 456788888888999999999 885 7999999999988888887766555555433 3444433
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.5e-13 Score=149.28 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=127.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.++..+.. | ..+..||||||||+|||++|+++|+.+.+
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 578999999999999988765541 1 24567999999999999999999998754
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++...-.+-.+++.+.... ....|++|||+|.+. ....+.||..++.. +.
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----~~a~naLLK~LEep-----p~ 148 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----NSAFNALLKTIEEP-----PP 148 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----HHHHHHHHHhhccC-----CC
Confidence 34444433222334566554322 345799999999883 23456788777642 45
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
..++|++|+.+..|.+++++ |+. .++|..++.++....++..+...+..+.++. ..|+... +-+..++..++
T Consensus 149 ~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s-~GdlR~alslL 221 (563)
T PRK06647 149 YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS-TGSVRDAYTLF 221 (563)
T ss_pred CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 67888888888999999999 885 7899999999998888888766666655544 3344433 33555444444
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.1e-13 Score=146.47 Aligned_cols=180 Identities=18% Similarity=0.276 Sum_probs=129.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--------------- 249 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--------------- 249 (480)
+|.+|++|+|++.+++.+...+. . | ..+..||||||||+|||++|+++|+.+.
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~----~-------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALD----N-------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 67899999999999988886553 1 2 2466899999999999999999998763
Q ss_pred ---------CcEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 250 ---------YDVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 250 ---------~~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
.+++.++.+.-.+-..++.+.... ....|++|||+|.+. ....+.||..|+.. +.
T Consensus 77 C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----~~A~NALLK~LEEp-----p~ 146 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----KEAFNALLKTLEEP-----PS 146 (535)
T ss_pred HHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----HHHHHHHHHHHhhc-----CC
Confidence 235555544333445677766432 234699999999883 34456788877653 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
...+|++|+.+..|.+++++ |+ .+++|.+++.++....+...+...+....++. +.++... +-+..++..++
T Consensus 147 ~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s-~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG-NGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHH
Confidence 56677788888999999999 87 58999999999988888888877666655443 3444333 44555555544
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=7.8e-14 Score=146.27 Aligned_cols=178 Identities=13% Similarity=0.242 Sum_probs=121.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.|...+.. | ..+..+|||||||||||++|+++|+.+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 688999999999999887654431 2 24567999999999999999999998854
Q ss_pred ------------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhccc
Q 011664 251 ------------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG 306 (480)
Q Consensus 251 ------------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg 306 (480)
+++.++.....+-.+++.+.... ....|++|||+|.+.. ...+.|+..++.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----~~~~~LLk~LEe 153 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----AAFNAFLKTLEE 153 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----HHHHHHHHHHhc
Confidence 23334333333334566554333 2457999999998842 234567777753
Q ss_pred ccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHH
Q 011664 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAE 385 (480)
Q Consensus 307 ~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~ad 385 (480)
. .+..++|++|+.+..+-+++.+ |+. .++|+.++.++....+...+...+..+.++. +.++..+ |-+...
T Consensus 154 p-----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s-~g~lr~ 224 (397)
T PRK14955 154 P-----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA-QGSMRD 224 (397)
T ss_pred C-----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHH
Confidence 2 3456777777778888889988 875 8999999999888888887766555555443 3343333 334443
Q ss_pred HHH
Q 011664 386 IGE 388 (480)
Q Consensus 386 I~~ 388 (480)
+.+
T Consensus 225 a~~ 227 (397)
T PRK14955 225 AQS 227 (397)
T ss_pred HHH
Confidence 333
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=4.6e-14 Score=152.76 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=110.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~ 292 (480)
..++|||++|||||+|++|||+++ +..++++++.++..+ ..+..+..+..+..+|+||||+.+.....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 469999999999999999999976 578889987665421 11112223345689999999998865443
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCC-C---ccCcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS-K---DHVDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHK 366 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~-~---~~LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~ 366 (480)
.. .+|++.++.+.. .+.. ||+|+|. | ..+++.|++ ||. ..+++..|+.+.|.+|++..+...+..
T Consensus 395 tq---eeLF~l~N~l~e---~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~ 465 (617)
T PRK14086 395 TQ---EEFFHTFNTLHN---ANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLN 465 (617)
T ss_pred HH---HHHHHHHHHHHh---cCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 33 445555554443 2333 4556664 3 346889999 885 888999999999999999999888888
Q ss_pred CchhHH-HHHHhCCCCCHHHHHHHHHH
Q 011664 367 LFPQVE-EIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 367 l~~~i~-~l~~~~~g~s~adI~~ll~~ 392 (480)
+.+++- .|+.+. .-+..+|..++.+
T Consensus 466 l~~eVi~yLa~r~-~rnvR~LegaL~r 491 (617)
T PRK14086 466 APPEVLEFIASRI-SRNIRELEGALIR 491 (617)
T ss_pred CCHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 887764 454443 4456666655543
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=1.3e-13 Score=134.55 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=109.1
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
++..+..+||+.+.... ....+.+..+.... +....++++||||+|||||+|++|+++++ +..+++++.
T Consensus 10 ~~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 10 VRLRDDATFANYYPGAN--AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CCCCCcccccccCcCCh--HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 44556678999863332 33333343332211 11123679999999999999999999754 678888887
Q ss_pred CCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC---cccccC
Q 011664 258 SRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV---DQALLR 334 (480)
Q Consensus 258 s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L---D~aLlr 334 (480)
.++... ...++....+..+|+|||++.+.+..... .+|++.++.... .+..+++.++..|..+ .|+|++
T Consensus 82 ~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~~~~~~---~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~S 153 (234)
T PRK05642 82 AELLDR--GPELLDNLEQYELVCLDDLDVIAGKADWE---EALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKS 153 (234)
T ss_pred HHHHhh--hHHHHHhhhhCCEEEEechhhhcCChHHH---HHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHH
Confidence 665432 12233333455799999999875443333 345555544433 2344545454455433 689999
Q ss_pred CCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 335 PGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 335 pGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
||. ..+.+..|+.+++..+++......+..+.+++
T Consensus 154 --Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev 190 (234)
T PRK05642 154 --RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV 190 (234)
T ss_pred --HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 984 78899999999999999876554444444443
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.7e-13 Score=143.73 Aligned_cols=217 Identities=17% Similarity=0.258 Sum_probs=133.8
Q ss_pred Ccc-ccccChHHHHHHHHHHHHHHhhhhHHhhh--C-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 188 TFD-TISMETDLKNRVKSDLESFLKAKHYYHRL--G-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 188 ~~~-~i~g~~~~k~~l~e~l~~~l~~~~~~~~~--g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
.++ .|+|++++|+.+...+....++-..-... . .....++||+||||||||++|+++|..++.+|+.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 344 38999999999987776544332111000 1 124568999999999999999999999999999999876542
Q ss_pred -------hHHHHHHHH------hhcCCcEEEEecccccccCccc---------ccchhhhhhhccccccc--------cc
Q 011664 263 -------DADLKSLLL------QTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNS--------CC 312 (480)
Q Consensus 263 -------~~~l~~l~~------~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~--------~~ 312 (480)
+..+..++. +...++||||||||.+.....+ ......||..|||-... ..
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 122333332 2246899999999999754211 12467899999864210 11
Q ss_pred CCceEEEEecCCCc----------------------------------------------------cCcccccCCCceeE
Q 011664 313 FEERVMVFTMNSKD----------------------------------------------------HVDQALLRPGRIDV 340 (480)
Q Consensus 313 ~~~~ivI~tTN~~~----------------------------------------------------~LD~aLlrpGRfd~ 340 (480)
....++|.|+|-.. -+.|+++ ||+|.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCe
Confidence 12235566665410 0233444 59999
Q ss_pred EEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhC---CCCCHHHHHHHHHHh--hhcHHHHHHHHHHHHHh
Q 011664 341 HIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNG---SSLSPAEIGELMIAN--RNSPSRALKSVITALQT 410 (480)
Q Consensus 341 ~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~---~g~s~adI~~ll~~a--~~~~~~al~~~i~~~~~ 410 (480)
.+.|...+.+...+|+...+. .+..++..+.+.. -.++.+-+..+...+ +....|.|+++++..-.
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~----~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~ 376 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKN----ALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILL 376 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhH
Confidence 999999999999888874321 0112222222211 146666666666652 23445666666665543
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.53 E-value=5.6e-14 Score=135.75 Aligned_cols=158 Identities=13% Similarity=0.209 Sum_probs=103.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~ 292 (480)
..++||||+|+|||+|++|+++++ +..++++++.++..+ ..+..+........+|+|||++.+....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~- 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQ- 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCch-
Confidence 368999999999999999999864 567889987655321 2233444556688999999999986433
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCCCcc---CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH---VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKL 367 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~---LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l 367 (480)
.+..+|+..++.+.. .++.+|+.+...|.. +++.|.+ ||. ..+.+..|+.+.|.++++......+..+
T Consensus 114 --~~q~~lf~l~n~~~~---~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l 186 (219)
T PF00308_consen 114 --RTQEELFHLFNRLIE---SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIEL 186 (219)
T ss_dssp --HHHHHHHHHHHHHHH---TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S
T ss_pred --HHHHHHHHHHHHHHh---hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 234555555555544 345555555556655 4678888 886 7999999999999999999998888888
Q ss_pred chhHHH-HHHhCCCCCHHHHHHHHH
Q 011664 368 FPQVEE-IFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 368 ~~~i~~-l~~~~~g~s~adI~~ll~ 391 (480)
.+++-+ |+... .-+..+|..++.
T Consensus 187 ~~~v~~~l~~~~-~~~~r~L~~~l~ 210 (219)
T PF00308_consen 187 PEEVIEYLARRF-RRDVRELEGALN 210 (219)
T ss_dssp -HHHHHHHHHHT-TSSHHHHHHHHH
T ss_pred cHHHHHHHHHhh-cCCHHHHHHHHH
Confidence 777644 44433 445555555543
No 110
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=1.8e-13 Score=141.42 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=109.2
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------CcEEEEeCC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---------YDVYDVDLS 258 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---------~~~~~i~~s 258 (480)
..+++.|.++..+.|...+...+.+ ..+.+++++||||||||++++++++++. ..++++++.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 4468899999999998877655432 1345799999999999999999998653 567888876
Q ss_pred CcCChHH--------------------------HHHHHH---hhcCCcEEEEecccccccCcccccchhhhhhhcccccc
Q 011664 259 RVADDAD--------------------------LKSLLL---QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN 309 (480)
Q Consensus 259 ~~~~~~~--------------------------l~~l~~---~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~ 309 (480)
...+... +..++. ....+.||+|||+|.+... .+..+.+|+...+...
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--~~~~L~~l~~~~~~~~- 160 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--DDDLLYQLSRARSNGD- 160 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--CcHHHHhHhccccccC-
Confidence 5443211 111111 2235679999999999722 2223344443311111
Q ss_pred cccCCceEEEEecCCCc---cCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 011664 310 SCCFEERVMVFTMNSKD---HVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 310 ~~~~~~~ivI~tTN~~~---~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.......+|+++|.++ .+++++.+ ||. ..|+|++++.++..+|++..+.
T Consensus 161 -~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 161 -LDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred -CCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1124567788888775 58888888 775 6899999999999999998875
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.7e-13 Score=148.15 Aligned_cols=181 Identities=15% Similarity=0.257 Sum_probs=129.1
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------ 251 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------ 251 (480)
..|.+|++|+|++.+++.|...+.. | ..+.++||+||+|+|||++|+++|+.+.+.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 3688999999999999888765431 2 245689999999999999999999987543
Q ss_pred -----------------EEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhccccc
Q 011664 252 -----------------VYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL 308 (480)
Q Consensus 252 -----------------~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~ 308 (480)
++.++..+-.+-.+++.++... ....|++|||+|.+. ....+.||..|+..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----~~a~naLLKtLEeP- 159 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----TAAFNALLKTLEEP- 159 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----HHHHHHHHHHHHhC-
Confidence 2333333333445677765433 245799999999883 23457778777543
Q ss_pred ccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHH
Q 011664 309 NSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIG 387 (480)
Q Consensus 309 ~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~ 387 (480)
.+..++|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...+....++. +.++... +-+..++.
T Consensus 160 ----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a-~Gdlr~al 231 (598)
T PRK09111 160 ----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAA-EGSVRDGL 231 (598)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHH
Confidence 3457788888888888888998 88 48999999999999999988877766666443 3333333 44555544
Q ss_pred HHH
Q 011664 388 ELM 390 (480)
Q Consensus 388 ~ll 390 (480)
+++
T Consensus 232 ~~L 234 (598)
T PRK09111 232 SLL 234 (598)
T ss_pred HHH
Confidence 444
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.51 E-value=9.8e-14 Score=157.53 Aligned_cols=157 Identities=16% Similarity=0.176 Sum_probs=111.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|-+++.++|.++....+.+.+.. ..+.+++|+||||||||++|+.+|..+ +.+++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 466899999999876555543321 234589999999999999999999865 356888
Q ss_pred EeCCCcC------C--hHHHHHHHHhh---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC
Q 011664 255 VDLSRVA------D--DADLKSLLLQT---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 255 i~~s~~~------~--~~~l~~l~~~~---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
++++.+. + +..++.++... ..++|||||||+.+.+.++.... ...-|.|..... .+...+|+||+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~n~Lkp~l~---~G~l~~IgaTT 324 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDAANLLKPALA---RGELRTIAATT 324 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccHHHHhhHHhh---CCCeEEEEecC
Confidence 8877654 2 24577777644 35799999999999864432111 111223333323 45677888777
Q ss_pred CC-----ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 324 SK-----DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 324 ~~-----~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.. -.+|+||.| ||. .|.++.|+.++...|++.+..
T Consensus 325 ~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 325 WAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred HHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 53 348999999 996 899999999999999765543
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=1.2e-13 Score=157.06 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=113.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.+-.++.++|.+...+.+.+.+.. ..+.+++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 356789999998866655544321 235579999999999999999999987 788999
Q ss_pred EeCCCcCC--------hHHHHHHHHh---hcCCcEEEEecccccccCccccc--chhhhhhhcccccccccCCceEEEEe
Q 011664 255 VDLSRVAD--------DADLKSLLLQ---TTSKSVILIEDLDRFLVEKPAAV--SLSGVLNFMDGVLNSCCFEERVMVFT 321 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~~---~~~~sII~IDEiD~l~~~~~~~~--~ls~lL~~ldg~~~~~~~~~~ivI~t 321 (480)
++++.+.. +..++.+|.. ...++||||||+|.+.+...+.. ..+.+| ..... .+...+|+|
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l---kp~l~---~g~l~~Iga 313 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML---KPALA---RGELHCVGA 313 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHh---cchhh---cCCCeEEEc
Confidence 98876542 2346777754 24689999999999986543222 223333 22223 456778888
Q ss_pred cCCCc-----cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 322 MNSKD-----HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 322 TN~~~-----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|+..+ .+|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 87665 48999999 997 689999999999999987654
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.4e-13 Score=147.61 Aligned_cols=169 Identities=13% Similarity=0.254 Sum_probs=119.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
+|.+|++|+|++.+++.|+..+. ....+.+|||+||||||||++|+++|+.+.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 57899999999999998775432 1235668999999999999999999998855
Q ss_pred ------------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhccc
Q 011664 251 ------------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG 306 (480)
Q Consensus 251 ------------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg 306 (480)
+++.++.....+-.+++.+.... ....|++|||+|.+.. ...+.||..|+.
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----~a~naLLK~LEe 153 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----AAFNAFLKTLEE 153 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----HHHHHHHHHHhC
Confidence 23333333333345566655333 2457999999998842 235678877764
Q ss_pred ccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhC
Q 011664 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNG 378 (480)
Q Consensus 307 ~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~ 378 (480)
. .+..++|++|+.+..|-+++.+ |. ..++|..++.++....+...+...+..+.++. +.|+..+
T Consensus 154 P-----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 154 P-----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred C-----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3 3456777777778899999998 77 58999999999988888877766565555443 3444443
No 115
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=146.52 Aligned_cols=191 Identities=14% Similarity=0.225 Sum_probs=121.1
Q ss_pred CCCCCCCccccc-cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEE
Q 011664 182 PFTHPSTFDTIS-METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDV 255 (480)
Q Consensus 182 ~~~~~~~~~~i~-g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i 255 (480)
++.+..||++.+ |.... .. ...+..+...+ | +..+++||||||||||+|++|+|+++ +..++++
T Consensus 97 ~l~~~~tFdnFv~g~~n~-~a-~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNS-FA-YHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCCCcccccccCCchH-HH-HHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 556778999976 54332 22 22222232221 2 23469999999999999999999975 4678888
Q ss_pred eCCCcCCh-------HHHHHHHHhh-cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 256 DLSRVADD-------ADLKSLLLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 256 ~~s~~~~~-------~~l~~l~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
++.++..+ ..+....... .++.+|+|||++.+.+.... ..+++..++.+.. ....+|+.+.+.|..
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~---q~elf~~~n~l~~---~~k~iIitsd~~p~~ 240 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGV---QTELFHTFNELHD---SGKQIVICSDREPQK 240 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHH---HHHHHHHHHHHHH---cCCeEEEECCCCHHH
Confidence 87654321 1111222222 26889999999988643322 2345555555444 233444444456655
Q ss_pred ---CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhHH-HHHHhCCCCCHHHHHHHHH
Q 011664 328 ---VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVE-EIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 328 ---LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~-~l~~~~~g~s~adI~~ll~ 391 (480)
+++.+++ ||. ..+.+.+|+.+.|.+|++..+...+..+.+++- .|+... .-+..++..++.
T Consensus 241 l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~ 307 (440)
T PRK14088 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAII 307 (440)
T ss_pred HHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHH
Confidence 5678888 885 788999999999999999998877777777664 454443 345555555443
No 116
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5e-13 Score=146.86 Aligned_cols=169 Identities=19% Similarity=0.307 Sum_probs=121.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++++|++.+++.|...+.. | ....++||+||||||||++|+++|+.+.+
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 678999999999999988765542 1 12347999999999999999999998755
Q ss_pred ------------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 251 ------------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 251 ------------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
+++.++.....+-..++.++... ....|++|||+|.+. ....+.||..|+.-
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----~~a~naLLK~LEeP----- 148 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----TAAFNALLKTLEEP----- 148 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----HHHHHHHHHHHhcC-----
Confidence 34455544333445677776443 234799999999883 23457788888742
Q ss_pred CCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhC
Q 011664 313 FEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNG 378 (480)
Q Consensus 313 ~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~ 378 (480)
....++|++|+.+..+-+++++ |+ ..++|+.++.++....+...+...+..+..+ +..++...
T Consensus 149 p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 149 PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 3457788888889999999998 88 4789999988887777777666555555433 33444433
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.8e-13 Score=146.09 Aligned_cols=180 Identities=17% Similarity=0.302 Sum_probs=124.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++|+|++.+++.|+..+.. | ..+..+|||||||+|||++|+++|+.+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 688999999999999988765542 1 23457899999999999999999987643
Q ss_pred -----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccC
Q 011664 251 -----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCF 313 (480)
Q Consensus 251 -----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~ 313 (480)
+++.++.+...+-.+++.+.... ....||+|||+|.+. ....+.||..|+.. .
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----~~a~naLLk~LEep-----p 148 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----TAAFNALLKTLEEP-----P 148 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----HHHHHHHHHHHhcC-----C
Confidence 23444544334444555554322 245799999999873 23456777777643 3
Q ss_pred CceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 314 EERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 314 ~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
...++|++|+.++.+.+.+++ |+. +++|+.++..+...++...+...+..+.++. ..++... +-++.++.+.+
T Consensus 149 ~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s-~Gdlr~al~~L 222 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA-TGSMRDAENLL 222 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 456777778888888888888 874 7899999999988888888776666555443 3444333 33554444433
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=6.7e-13 Score=134.19 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=115.5
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEe
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVD 256 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~ 256 (480)
....|.+|++++|.+++++.+...+. . +. ..+++||||||||||++++++++++. .+++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 55678999999999998888876553 1 11 12589999999999999999999873 3455555
Q ss_pred CCCcCChHHHHHHH---Hhh-----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 257 LSRVADDADLKSLL---LQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 257 ~s~~~~~~~l~~l~---~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
.+...+...++..+ ... ..+.+|+|||+|.+.. .....|+..++... ....+|+++|.+..+
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~~~L~~~le~~~-----~~~~lIl~~~~~~~l 145 (319)
T PRK00440 76 ASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQQALRRTMEMYS-----QNTRFILSCNYSSKI 145 (319)
T ss_pred cccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHHHHHHHHHhcCC-----CCCeEEEEeCCcccc
Confidence 44433322222222 111 2356999999998842 12345666665432 235677788888888
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHh
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQN 377 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~ 377 (480)
.+++.+ |+. .++|++++.++...+++.++...+..+.++ ++.++..
T Consensus 146 ~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 146 IDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV 192 (319)
T ss_pred chhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888 875 699999999999999998887666555443 2344443
No 119
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=4.7e-13 Score=139.94 Aligned_cols=214 Identities=18% Similarity=0.267 Sum_probs=132.6
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhh----hCCC-CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC----
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHR----LGRV-WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA---- 261 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~----~g~~-~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~---- 261 (480)
.|+|++++|+.+...+....++-..... .+.. .+.++||+||||||||++|+++|..++.+|..++++.+.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3699999999998777544333211000 0111 245899999999999999999999999999988876643
Q ss_pred -Ch---HHHHHHHH------hhcCCcEEEEecccccccCccc---------ccchhhhhhhccccccc--------ccCC
Q 011664 262 -DD---ADLKSLLL------QTTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNS--------CCFE 314 (480)
Q Consensus 262 -~~---~~l~~l~~------~~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~--------~~~~ 314 (480)
+. ..+..++. ....++||||||||.+.....+ ....+.||..|+|.... ....
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 21 12333332 2346789999999998763221 13567799999876421 1123
Q ss_pred ceEEEEecCCCc--------------------------------------------------cCcccccCCCceeEEEEc
Q 011664 315 ERVMVFTMNSKD--------------------------------------------------HVDQALLRPGRIDVHIHF 344 (480)
Q Consensus 315 ~~ivI~tTN~~~--------------------------------------------------~LD~aLlrpGRfd~~I~~ 344 (480)
+.++|+|+|-.. .+.|+++ ||+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 457788887510 0224444 499999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCchhHHHHHHh---CCCCCHHHHHHHHHHh--hhcHHHHHHHHHHHHHh
Q 011664 345 PLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQN---GSSLSPAEIGELMIAN--RNSPSRALKSVITALQT 410 (480)
Q Consensus 345 ~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~---~~g~s~adI~~ll~~a--~~~~~~al~~~i~~~~~ 410 (480)
.+.+.++..+|+..-+. .+..++..+... .-.++++-+..+...+ .....|.++.+++..-.
T Consensus 316 ~pL~~~~L~~Il~~~~n----~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~ 382 (413)
T TIGR00382 316 EKLDEEALIAILTKPKN----ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLL 382 (413)
T ss_pred CCCCHHHHHHHHHHHHH----HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhH
Confidence 99999998888765321 011122222211 1245666666666553 23445677777665544
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=142.95 Aligned_cols=145 Identities=12% Similarity=0.254 Sum_probs=100.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAA 294 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~ 294 (480)
++++||||||+|||+|++|+|+++ +..+++++...+... .....+-.......+|+|||++.+.+....+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 579999999999999999999976 678888886544221 1111111223567899999999886433333
Q ss_pred cchhhhhhhcccccccccCCceEEEEecC-CCc---cCcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCc
Q 011664 295 VSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKD---HVDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLF 368 (480)
Q Consensus 295 ~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~---~LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~ 368 (480)
.+|+..++.+.. .+..+|+|+| .|. .++++|++ ||. ..+.+++|+.+.+.+|++..+...+..+.
T Consensus 222 ---eelf~l~N~l~~----~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~ 292 (445)
T PRK12422 222 ---EEFFHTFNSLHT----EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIE 292 (445)
T ss_pred ---HHHHHHHHHHHH----CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 344444443333 2234555555 454 46799999 996 89999999999999999999887777777
Q ss_pred hhHHH-HHHhC
Q 011664 369 PQVEE-IFQNG 378 (480)
Q Consensus 369 ~~i~~-l~~~~ 378 (480)
+++-+ |+...
T Consensus 293 ~evl~~la~~~ 303 (445)
T PRK12422 293 ETALDFLIEAL 303 (445)
T ss_pred HHHHHHHHHhc
Confidence 76644 55543
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=143.94 Aligned_cols=178 Identities=16% Similarity=0.302 Sum_probs=129.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--------------- 249 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--------------- 249 (480)
.|.+|++|+|++.+++.|...+.. | ..+..||||||+|+|||++|+++|+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 678999999999999988765541 1 2466899999999999999999999764
Q ss_pred ----------CcEEEEeCCCcCChHHHHHHHHhhc------CCcEEEEecccccccCcccccchhhhhhhcccccccccC
Q 011664 250 ----------YDVYDVDLSRVADDADLKSLLLQTT------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCF 313 (480)
Q Consensus 250 ----------~~~~~i~~s~~~~~~~l~~l~~~~~------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~ 313 (480)
.+++.++.++..+-..++.++.+.. ...|++|||+|.+. ....+.|+..|+.. .
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----~~a~naLLK~LEep-----p 149 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----QAAFNAFLKTLEEP-----P 149 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----HHHHHHHHHHHhCC-----C
Confidence 3556666654444456777664432 34699999999883 23456788887653 3
Q ss_pred CceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHH
Q 011664 314 EERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 314 ~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ 388 (480)
+..++|++|+.+..|-++|++ |+. .++|..++.++....+...+...+.....+ ++.|+... |-+..++.+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s-~gdlr~al~ 221 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA-DGGMRDALS 221 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHH
Confidence 456788888888899999999 884 799999999998888888877666665554 34444443 444444433
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=5.8e-13 Score=148.96 Aligned_cols=160 Identities=16% Similarity=0.292 Sum_probs=114.4
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLL 270 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~ 270 (480)
.|+|++++++.|.+.+.....+-. . ...+..++||+||||||||.+|+++|..++.+++.++++++.....+..++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 479999999999888765422100 0 012334799999999999999999999999999999998875432222222
Q ss_pred ------------------HhhcCCcEEEEecccccccCcccccchhhhhhhcc-ccccc-----ccCCceEEEEecCCC-
Q 011664 271 ------------------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-GVLNS-----CCFEERVMVFTMNSK- 325 (480)
Q Consensus 271 ------------------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-g~~~~-----~~~~~~ivI~tTN~~- 325 (480)
.+..+.+||||||||.+. ....+.|++.|| |.... ....+.+||+|||.-
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 122356999999999884 234567777776 32211 112467899999922
Q ss_pred ------------------------ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 326 ------------------------DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 326 ------------------------~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
..+.|.++. |+|.+|.|++.+.++..+|+..++.
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 124577777 9999999999999999999987764
No 123
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.46 E-value=7.9e-13 Score=147.23 Aligned_cols=152 Identities=19% Similarity=0.285 Sum_probs=104.0
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD 263 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~ 263 (480)
-+|.+|++++|++.+..... .+...+.. + ...+++||||||||||++|+++|+..+.+++.+++.. .+.
T Consensus 22 ~RP~tldd~vGQe~ii~~~~-~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGR-LLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhH-HHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhh
Confidence 35899999999998775311 12222221 1 1237999999999999999999999999998888653 222
Q ss_pred HHHHHHHHh-------hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec--CCCccCcccccC
Q 011664 264 ADLKSLLLQ-------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM--NSKDHVDQALLR 334 (480)
Q Consensus 264 ~~l~~l~~~-------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT--N~~~~LD~aLlr 334 (480)
.+++..+.. ...+.+|||||||.+.. .....|+..++ ...+++|++| |....+++++++
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----~qQdaLL~~lE-------~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----AQQDALLPWVE-------NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----HHHHHHHHHhc-------CceEEEEEecCCChHhhhhhHhhc
Confidence 233333322 23567999999998732 11244555443 1234556544 334578999998
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 335 PGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 335 pGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|+ ..+.|++++.++...+++..+.
T Consensus 159 --R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 159 --RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred --cc-cceecCCCCHHHHHHHHHHHHH
Confidence 76 4799999999999999998875
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=8e-13 Score=131.08 Aligned_cols=129 Identities=20% Similarity=0.245 Sum_probs=91.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHH---------------------------------HHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLK---------------------------------SLLL 271 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~---------------------------------~l~~ 271 (480)
+.+||+||||||||++|+++|..+|.+++.++++.-...+++. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4799999999999999999999999999999887543322210 0112
Q ss_pred hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc--c--------cCCceEEEEecCCC-----ccCcccccCC
Q 011664 272 QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS--C--------CFEERVMVFTMNSK-----DHVDQALLRP 335 (480)
Q Consensus 272 ~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~--~--------~~~~~ivI~tTN~~-----~~LD~aLlrp 335 (480)
....+.+|+|||||.+- ....+.|+..|+.-. .. . -..+..||+|+|.. ..++++|++
T Consensus 102 A~~~g~~lllDEi~r~~-----~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~- 175 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSK-----PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD- 175 (262)
T ss_pred HHHcCCEEEEcchhhCC-----HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh-
Confidence 23456899999999763 234455666664211 00 0 01234578899965 356899999
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 336 GRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 336 GRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|| ..+.+++|+.++-.+|++.+.+
T Consensus 176 -R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 176 -RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred -hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 99 6899999999999999988753
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.45 E-value=1.8e-12 Score=124.85 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=98.9
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC-CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVW-KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~-~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+..+.-+|++.+..+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++++..+..+.. ....
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4445568999755442222 2233333322 122222 3679999999999999999999988753322 1111
Q ss_pred CChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc--CcccccCCCce
Q 011664 261 ADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH--VDQALLRPGRI 338 (480)
Q Consensus 261 ~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~--LD~aLlrpGRf 338 (480)
.. .. .....+++|||||.+ ....+..++|.+ .. .+..+++.++..|.. + |+|++ |+
T Consensus 79 -~~----~~---~~~~d~lliDdi~~~-----~~~~lf~l~N~~---~e---~g~~ilits~~~p~~l~l-~~L~S--Rl 136 (214)
T PRK06620 79 -NE----EI---LEKYNAFIIEDIENW-----QEPALLHIFNII---NE---KQKYLLLTSSDKSRNFTL-PDLSS--RI 136 (214)
T ss_pred -ch----hH---HhcCCEEEEeccccc-----hHHHHHHHHHHH---Hh---cCCEEEEEcCCCccccch-HHHHH--HH
Confidence 01 11 124579999999954 112334444443 33 344566666555543 6 88998 98
Q ss_pred e--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 339 D--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 339 d--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
. ..+.+..|+.+.+.+++++.+...+..+.+++
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 6 58999999999999999988765555666555
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=1.6e-12 Score=135.84 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=111.6
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEe
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVD 256 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~ 256 (480)
++.+....+.+.|-++..++|...+...+.. ..+.++++|||||||||++++.+++++ +..+++++
T Consensus 22 ~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 22 VLEPDYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred hCCCCCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3444445677889888888888777654332 123569999999999999999999876 57788898
Q ss_pred CCCcCChH-----------------------HH-HHH---HHhhcCCcEEEEecccccccCcccccchhhhhhhcccccc
Q 011664 257 LSRVADDA-----------------------DL-KSL---LLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN 309 (480)
Q Consensus 257 ~s~~~~~~-----------------------~l-~~l---~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~ 309 (480)
+....+.. ++ ..+ +.....+.||+|||+|.+. .+.....+..|+..++...
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~-~~~~~~~l~~l~~~~~~~~- 170 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF-EKEGNDVLYSLLRAHEEYP- 170 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh-ccCCchHHHHHHHhhhccC-
Confidence 76443211 11 111 1122345799999999987 2333345566666554332
Q ss_pred cccCCceEEEEecCCC---ccCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 011664 310 SCCFEERVMVFTMNSK---DHVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 310 ~~~~~~~ivI~tTN~~---~~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.....+|+++|.+ +.+++.+.+ |+. ..|+|++++.++...+++..+.
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 2256677777755 457787776 664 6899999999999999988874
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.44 E-value=2.5e-12 Score=133.44 Aligned_cols=215 Identities=16% Similarity=0.262 Sum_probs=141.6
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCC-CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-----C--
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGR-VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-----D-- 262 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~-~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-----~-- 262 (480)
.|+|++++|+.+...+....++......... ..++++||+||||||||++|+++|..++.+|+.++++.+. +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998877554333221111111 1357899999999999999999999999999999976443 2
Q ss_pred -hHHHHHHHHh---------------------------------------------------------------------
Q 011664 263 -DADLKSLLLQ--------------------------------------------------------------------- 272 (480)
Q Consensus 263 -~~~l~~l~~~--------------------------------------------------------------------- 272 (480)
++.++.++..
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 1112222211
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 011664 273 -----------------------------------------------------------------------TTSKSVILI 281 (480)
Q Consensus 273 -----------------------------------------------------------------------~~~~sII~I 281 (480)
+.+..||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred ecccccccCccc-------ccchhhhhhhccccccc-----ccCCceEEEEe----cCCCccCcccccCCCceeEEEEcC
Q 011664 282 EDLDRFLVEKPA-------AVSLSGVLNFMDGVLNS-----CCFEERVMVFT----MNSKDHVDQALLRPGRIDVHIHFP 345 (480)
Q Consensus 282 DEiD~l~~~~~~-------~~~ls~lL~~ldg~~~~-----~~~~~~ivI~t----TN~~~~LD~aLlrpGRfd~~I~~~ 345 (480)
||||.++...++ ......||..++|-.-. ...+.+++|++ ...|++|-|.|.- ||..++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 999999864321 12345688888873211 12356677764 2467788888886 999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCCCchhHHHHHHhC---CCCCHHHHHHHHHHhh-------hcHHHHHHHHHHHHHhc
Q 011664 346 LCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNG---SSLSPAEIGELMIANR-------NSPSRALKSVITALQTD 411 (480)
Q Consensus 346 ~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~---~g~s~adI~~ll~~a~-------~~~~~al~~~i~~~~~~ 411 (480)
.++.+++..|+.. ....+-.+...|+... -.||...|.++...|. .-..|.|+.+++.+-..
T Consensus 334 ~L~~~dL~~ILte----P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 334 ALTEEDFVRILTE----PKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred CCCHHHHHHHhcC----ChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 9999998887631 1122333444554321 1467777777766543 44567888888877654
No 128
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.44 E-value=3.5e-12 Score=132.33 Aligned_cols=215 Identities=16% Similarity=0.255 Sum_probs=142.6
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-----C--
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-----D-- 262 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-----~-- 262 (480)
-|+|++++|+.+...+....++......++ ...|+++||+||||||||++|+++|..++.+|+.++.+.+. +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 378999999999877765433332211111 22457999999999999999999999999999999976432 2
Q ss_pred -hHHHHHHHH----------------------------------------------------------------------
Q 011664 263 -DADLKSLLL---------------------------------------------------------------------- 271 (480)
Q Consensus 263 -~~~l~~l~~---------------------------------------------------------------------- 271 (480)
++.++.++.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 111222211
Q ss_pred -----------------------------------------------------------------------hhcCCcEEE
Q 011664 272 -----------------------------------------------------------------------QTTSKSVIL 280 (480)
Q Consensus 272 -----------------------------------------------------------------------~~~~~sII~ 280 (480)
.+.+..|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 113557999
Q ss_pred EecccccccCcc-------cccchhhhhhhccccccc-----ccCCceEEEEec----CCCccCcccccCCCceeEEEEc
Q 011664 281 IEDLDRFLVEKP-------AAVSLSGVLNFMDGVLNS-----CCFEERVMVFTM----NSKDHVDQALLRPGRIDVHIHF 344 (480)
Q Consensus 281 IDEiD~l~~~~~-------~~~~ls~lL~~ldg~~~~-----~~~~~~ivI~tT----N~~~~LD~aLlrpGRfd~~I~~ 344 (480)
|||||.++.... +......||..++|-.-. ...+++++|++- ..|++|=|.|.- ||..++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 999999986431 112356688888873221 223556777642 357777788875 99999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhC---CCCCHHHHHHHHHHhh-------hcHHHHHHHHHHHHHhc
Q 011664 345 PLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNG---SSLSPAEIGELMIANR-------NSPSRALKSVITALQTD 411 (480)
Q Consensus 345 ~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~---~g~s~adI~~ll~~a~-------~~~~~al~~~i~~~~~~ 411 (480)
..++.+++..|+. .....+-.+...|++.. -.||..-+.++...|. .-..|.|+.+++.+-..
T Consensus 331 ~~L~~edL~rILt----eP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 331 QALTTDDFERILT----EPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred CCCCHHHHHHHhc----CChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 9999999887763 11223344555555432 1468877777766543 45567888888777554
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43 E-value=6.6e-13 Score=151.46 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=111.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.+..++.++|.++..+.+.+.+. ...+.+++|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45678999999886666554332 1245678999999999999999999875 678898
Q ss_pred EeCCCcCC--------hHHHHHHHHhh---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC
Q 011664 255 VDLSRVAD--------DADLKSLLLQT---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~~~---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
++++.+.. +..++.++... ..++|||||||+.+.+.+..... ....+.+..... .....+|++|+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~~~Lk~~l~---~g~i~~IgaTt 310 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-MDAGNMLKPALA---RGELHCIGATT 310 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-hHHHHHhchhhh---cCceEEEEeCc
Confidence 88766531 23466666543 35899999999999853322211 122233333323 35577788777
Q ss_pred CC-----ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 011664 324 SK-----DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 324 ~~-----~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~ 362 (480)
.. -.+|+|+.| ||. .|.++.|+.+++..|++.+...
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 55 347999999 996 5899999999999999876543
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.42 E-value=7e-13 Score=150.80 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=109.1
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEe
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVD 256 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~ 256 (480)
-.++.++|.++..+.+.+.+.. ..+++++|+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999888887765432 245689999999999999999999876 47899999
Q ss_pred CCCcC------C--hHHHHHHHHhh--cCCcEEEEecccccccCcccc--cchhhhhhhcccccccccCCceEEEEecCC
Q 011664 257 LSRVA------D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA--VSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 257 ~s~~~------~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~--~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
++.+. + +..++.++... ..++||||||||.+.+..... ...+.+|. .... .+...+|++|+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk---p~l~---rg~l~~IgaTt~ 316 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK---PALA---RGELQCIGATTL 316 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH---HHHh---CCCcEEEEeCCH
Confidence 76543 2 33577777543 468899999999998654322 22233332 2222 345667777775
Q ss_pred Cc-----cCcccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 011664 325 KD-----HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSY 359 (480)
Q Consensus 325 ~~-----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~ 359 (480)
.+ ..|++|.+ ||. .|.++.|+.++...|++..
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 43 47999999 997 5899999999988887654
No 131
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.42 E-value=8.6e-12 Score=119.27 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=139.2
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEE
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVY 253 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~ 253 (480)
....+|..+++.+.+|+|.+.+|+.+.+....|+++. +-..+||||..|||||+|++|+-++. |..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 4567888889999999999999999999888887652 44689999999999999999999876 56788
Q ss_pred EEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc---
Q 011664 254 DVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ--- 330 (480)
Q Consensus 254 ~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~--- 330 (480)
.|+-.++.+-..+...+.....+-|||+||+-- ..+....-.|-..|||-.. ..+.+++|.+|+|+..-|..
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF----e~gd~~yK~LKs~LeG~ve-~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSF----EEGDDAYKALKSALEGGVE-GRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC----CCCchHHHHHHHHhcCCcc-cCCCeEEEEEecCCcccccHhhh
Confidence 888777777777778888888999999999752 1122334556677887665 45678888889997543321
Q ss_pred -----------------cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc
Q 011664 331 -----------------ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF 368 (480)
Q Consensus 331 -----------------aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~ 368 (480)
.+-=..||...+.|++|+.++..+|+..|.+..+....
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~ 247 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDIS 247 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11112499999999999999999999999987766664
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=4.1e-12 Score=142.93 Aligned_cols=156 Identities=19% Similarity=0.316 Sum_probs=110.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCC----CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRV----WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDAD 265 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~----~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~ 265 (480)
..|+|++++++.|.+.+... +.|.. +...+||+||||||||++|+++|..++.+++.++++++.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 35677777777777655432 22321 2335899999999999999999999999999999887654211
Q ss_pred -------------------HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccc-c-----cccCCceEEEE
Q 011664 266 -------------------LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-N-----SCCFEERVMVF 320 (480)
Q Consensus 266 -------------------l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~-----~~~~~~~ivI~ 320 (480)
+...+ +..+.+||+|||||.+. ....+.|++.||.-. . .....+.+||+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~-~~~p~~VvllDEieka~-----~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAV-RKHPHCVLLLDEIEKAH-----PDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHH-HhCCCeEEEEechhhcC-----HHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 22212 23466999999999774 234566777776321 1 01134678999
Q ss_pred ecCCCc-------------------------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 321 TMNSKD-------------------------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 321 tTN~~~-------------------------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 998531 14566766 9999999999999999999998875
No 133
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=2.2e-12 Score=137.24 Aligned_cols=188 Identities=14% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCCccccc-cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCC
Q 011664 186 PSTFDTIS-METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSR 259 (480)
Q Consensus 186 ~~~~~~i~-g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~ 259 (480)
+.||++.+ |..+ .. ....+..+...+ |.. ..+++||||+|||||+|++|+++++ +..++++++.+
T Consensus 111 ~~tFdnFv~g~~n-~~-A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 111 ENTFENFVIGSSN-EQ-AFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ccchhcccCCCcH-HH-HHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46888875 4433 22 223333332222 222 2479999999999999999999954 56788888765
Q ss_pred cCCh---------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC-CCcc--
Q 011664 260 VADD---------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKDH-- 327 (480)
Q Consensus 260 ~~~~---------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~~-- 327 (480)
+... ..+...........+|+|||++.+....... .+|...++.... .+. .+|+|+| .|..
T Consensus 182 f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~---e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~ 254 (450)
T PRK14087 182 FARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTN---EIFFTIFNNFIE---NDK-QLFFSSDKSPELLN 254 (450)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHH---HHHHHHHHHHHH---cCC-cEEEECCCCHHHHh
Confidence 4321 1222233344678899999999885433333 344444444433 233 3555655 4433
Q ss_pred -CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCC--CCchhH-HHHHHhCCCCCHHHHHHHHHH
Q 011664 328 -VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDH--KLFPQV-EEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 328 -LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~--~l~~~i-~~l~~~~~g~s~adI~~ll~~ 392 (480)
+++.|++ ||. ..+.+..|+.++|.+|+++.+...+. .+.+++ +.|+... +-++..+..+|..
T Consensus 255 ~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~ 322 (450)
T PRK14087 255 GFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSR 322 (450)
T ss_pred hccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHH
Confidence 5789999 985 88999999999999999999876543 455554 4454443 4566666665543
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.37 E-value=3.3e-12 Score=136.02 Aligned_cols=162 Identities=16% Similarity=0.333 Sum_probs=123.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc-------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------- 251 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------- 251 (480)
+|.+|++++|++.+.+.|...+.. .....+|||.||-|||||++|+.+|..+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 478999999999999998876652 1234589999999999999999999977553
Q ss_pred -----------EEEEeCCCcCChHHHHHHHHhhc------CCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 252 -----------VYDVDLSRVADDADLKSLLLQTT------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 252 -----------~~~i~~s~~~~~~~l~~l~~~~~------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
++.+|..+-.+-.++|.+..+.. ...|.+|||++.+. ....+.||..++. .+.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----~~afNALLKTLEE-----PP~ 148 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----KQAFNALLKTLEE-----PPS 148 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----HHHHHHHhccccc-----Ccc
Confidence 22222222223455777765542 45799999999883 4456778877753 356
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
.+++|++|..+..+++.+++ |+. ++.|...+.++....+...+..++...+++.
T Consensus 149 hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a 202 (515)
T COG2812 149 HVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDA 202 (515)
T ss_pred CeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHH
Confidence 78899999999999999999 995 8899999999988889999887777766544
No 135
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=3.2e-11 Score=124.33 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=121.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------------ 251 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------------ 251 (480)
.||..+++|+|++++++.+...+.. | ..+..+||+||+|+|||++|..+|+.+.+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 4899999999999999988865431 2 245589999999999999999999977431
Q ss_pred ------------------EEEEeCC---------CcCChHHHHHHH---Hhh---cCCcEEEEecccccccCcccccchh
Q 011664 252 ------------------VYDVDLS---------RVADDADLKSLL---LQT---TSKSVILIEDLDRFLVEKPAAVSLS 298 (480)
Q Consensus 252 ------------------~~~i~~s---------~~~~~~~l~~l~---~~~---~~~sII~IDEiD~l~~~~~~~~~ls 298 (480)
++.+... ...+-.+++.+. ... ....|++|||+|.+- ....+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----~~aan 159 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----RNAAN 159 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----HHHHH
Confidence 1112110 011123344432 221 245799999999883 33456
Q ss_pred hhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHh
Q 011664 299 GVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQN 377 (480)
Q Consensus 299 ~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~ 377 (480)
.||..++.- ....++|+.|+.|+.+.|.+++ |+ .++.|++|+.++...++.......+ +.++ +..++..
T Consensus 160 aLLk~LEEp-----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~ 229 (351)
T PRK09112 160 AILKTLEEP-----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQR 229 (351)
T ss_pred HHHHHHhcC-----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHH
Confidence 788888642 3456677778889999999998 98 5999999999999888887432211 2233 3444444
Q ss_pred CCCCCHHHHHHHHHH
Q 011664 378 GSSLSPAEIGELMIA 392 (480)
Q Consensus 378 ~~g~s~adI~~ll~~ 392 (480)
. +-+|....+++..
T Consensus 230 s-~G~pr~Al~ll~~ 243 (351)
T PRK09112 230 S-KGSVRKALLLLNY 243 (351)
T ss_pred c-CCCHHHHHHHHhc
Confidence 3 5666665555543
No 136
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=3.9e-12 Score=111.55 Aligned_cols=117 Identities=24% Similarity=0.364 Sum_probs=81.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHH-----------HHHHhhcCCcEEEEecccccc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLK-----------SLLLQTTSKSVILIEDLDRFL 288 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~-----------~l~~~~~~~sII~IDEiD~l~ 288 (480)
..++++++||||||||++++++++.+ +.+++.++++......... ........+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34589999999999999999999998 8899999987765433221 112233578999999999772
Q ss_pred cCcccccchhhhhhhccccccc-ccCCceEEEEecCCCc--cCcccccCCCceeEEEEcCC
Q 011664 289 VEKPAAVSLSGVLNFMDGVLNS-CCFEERVMVFTMNSKD--HVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 289 ~~~~~~~~ls~lL~~ldg~~~~-~~~~~~ivI~tTN~~~--~LD~aLlrpGRfd~~I~~~~ 346 (480)
. ....+++..+...... ....+..+|++||... .+++.+.. ||+.++.+++
T Consensus 98 ~-----~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R-----GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H-----HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 1224444444433220 0024567788888776 77888888 9998888763
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=1.5e-11 Score=135.44 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=108.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|.+|++++|.+...+.+...+. .+.+..++|+||||||||++|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 57899999999998887654432 1234579999999999999999998755 356888
Q ss_pred EeCCCcCCh-HHH----------------HHHHHh------------hcCCcEEEEecccccccCcccccchhhhhhhcc
Q 011664 255 VDLSRVADD-ADL----------------KSLLLQ------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD 305 (480)
Q Consensus 255 i~~s~~~~~-~~l----------------~~l~~~------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld 305 (480)
+++..+..+ ..+ +..+.. ..+..+|||||++.+-. .....|+..|+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----LLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----HHHHHHHHHHh
Confidence 887654211 111 011111 12457999999998732 12233444432
Q ss_pred cc--------c---------------ccccCCceEEEE-ecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 306 GV--------L---------------NSCCFEERVMVF-TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 306 g~--------~---------------~~~~~~~~ivI~-tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.- + ........++|+ ||+.++.++++|++ ||. .+++++++.++...|++..+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 10 0 000112345555 56778899999998 997 678999999999999999876
Q ss_pred cCCCCCchhH
Q 011664 362 LKDHKLFPQV 371 (480)
Q Consensus 362 ~~~~~l~~~i 371 (480)
..+..+.+++
T Consensus 368 ~~~v~ls~ea 377 (615)
T TIGR02903 368 KINVHLAAGV 377 (615)
T ss_pred HcCCCCCHHH
Confidence 5443344433
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=4.5e-11 Score=123.82 Aligned_cols=152 Identities=14% Similarity=0.230 Sum_probs=110.9
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------- 250 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------- 250 (480)
.+|+++++|+|++++++.+...+.. | ..+.++||+||+|+||+++|.++|+.+-+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 4899999999999999998865542 2 34668999999999999999999986521
Q ss_pred ---------------------cEEEEeCC--C-------cCChHHHHHHHHhh------cCCcEEEEecccccccCcccc
Q 011664 251 ---------------------DVYDVDLS--R-------VADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAA 294 (480)
Q Consensus 251 ---------------------~~~~i~~s--~-------~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~ 294 (480)
+++.+... + ...-.+++.+.... ..+.|++|||+|.+ +.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~~ 155 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----NA 155 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----CH
Confidence 22333221 1 11123455544321 35789999999987 23
Q ss_pred cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 295 VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 295 ~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
...+.||..++.. ....++|++|+.++.+.|.+++ |+ ..+.|++|+.++-.+++....
T Consensus 156 ~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 NAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 4556788777532 3456788899999999999988 88 489999999999888887754
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=135.93 Aligned_cols=166 Identities=15% Similarity=0.202 Sum_probs=110.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEeCC
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVDLS 258 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~~s 258 (480)
.+.|.+-++..++|...+...+.. ..+...++++||||||||++++.+.+++ .+.+++|+|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 367888888888888777665543 1123345799999999999999998765 2567899986
Q ss_pred CcCChHH-----------------------HHHHHHhh----cCCcEEEEecccccccCcccccchhhhhhhcccccccc
Q 011664 259 RVADDAD-----------------------LKSLLLQT----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSC 311 (480)
Q Consensus 259 ~~~~~~~-----------------------l~~l~~~~----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~ 311 (480)
.+..... +..+|... ....||+|||||.+... .+.. |++.++....
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--~QDV---LYnLFR~~~~-- 898 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--TQKV---LFTLFDWPTK-- 898 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--HHHH---HHHHHHHhhc--
Confidence 5543221 22333322 23469999999999753 2223 3444432221
Q ss_pred cCCceEEEEecCC---CccCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 312 CFEERVMVFTMNS---KDHVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 312 ~~~~~ivI~tTN~---~~~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
.....+||+++|. ++.|+|.+.+ ||. ..|.|++++.+++..|++..+......+.+++
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 1345667778874 6778899988 776 35899999999999999988764333344443
No 140
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.34 E-value=4.2e-12 Score=127.36 Aligned_cols=148 Identities=21% Similarity=0.339 Sum_probs=99.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCCCcC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLSRVA 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s~~~ 261 (480)
+|.+++|.+|++.+... ...+...+.. + .-.+++||||||||||+||+.||+....+ |+.++...-
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq-------~--~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------N--RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc-------C--CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 57889999998876654 2223333222 1 12379999999999999999999877554 555554432
Q ss_pred ChHHHHHHHHhh-------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEe-c-CCCccCcccc
Q 011664 262 DDADLKSLLLQT-------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT-M-NSKDHVDQAL 332 (480)
Q Consensus 262 ~~~~l~~l~~~~-------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t-T-N~~~~LD~aL 332 (480)
+..+++.+|.++ ..+.|||||||+.+- +..+ ..||-.+ . .+.+++|++ | |..-.|..||
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN--ksQQ---D~fLP~V---E----~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN--KSQQ---DTFLPHV---E----NGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh--hhhh---hccccee---c----cCceEEEecccCCCccchhHHH
Confidence 345678888554 467999999999883 2222 2233222 1 345667774 4 5557899999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHH
Q 011664 333 LRPGRIDVHIHFPLCDFSSFKTLASS 358 (480)
Q Consensus 333 lrpGRfd~~I~~~~p~~~~r~~il~~ 358 (480)
++ |+- ++.+...+.+....|+.+
T Consensus 270 lS--RC~-VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 270 LS--RCR-VFVLEKLPVNAVVTILMR 292 (554)
T ss_pred Hh--ccc-eeEeccCCHHHHHHHHHH
Confidence 99 884 667777777777777766
No 141
>PRK09087 hypothetical protein; Validated
Probab=99.33 E-value=1.7e-11 Score=119.11 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=87.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD 305 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld 305 (480)
.++||||+|||||||+++++...+..++. ...+.. . .+... ...+|+|||+|.+. ... .+|+..++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~-~----~~~~~-~~~~l~iDDi~~~~---~~~---~~lf~l~n 111 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGS-D----AANAA-AEGPVLIEDIDAGG---FDE---TGLFHLIN 111 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcch-H----HHHhh-hcCeEEEECCCCCC---CCH---HHHHHHHH
Confidence 49999999999999999999987665433 322211 1 11111 22589999999762 122 34555554
Q ss_pred cccccccCCceEEEEecCCCc--c-CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHH
Q 011664 306 GVLNSCCFEERVMVFTMNSKD--H-VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQ 376 (480)
Q Consensus 306 g~~~~~~~~~~ivI~tTN~~~--~-LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~ 376 (480)
.+.. .+..+|+.++..|. . ..++|++ |+. ..+++..|+.+.+.+++++.+...+..+.+++ +.|+.
T Consensus 112 ~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~ 183 (226)
T PRK09087 112 SVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVS 183 (226)
T ss_pred HHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4443 23344444444443 2 3688999 996 89999999999999999999877666666554 33443
No 142
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=3.3e-11 Score=123.16 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=101.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------CCc--EEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-------SYD--VYDV 255 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-------~~~--~~~i 255 (480)
.|.+|++|+|++++++.+.-.+.. +-..++||+||||||||++|+++|+.+ +.+ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999999987643221 112479999999999999999999987 331 1111
Q ss_pred eCC----------------------------CcCChHHHHHHHHh-----------hcCCcEEEEecccccccCcccccc
Q 011664 256 DLS----------------------------RVADDADLKSLLLQ-----------TTSKSVILIEDLDRFLVEKPAAVS 296 (480)
Q Consensus 256 ~~s----------------------------~~~~~~~l~~l~~~-----------~~~~sII~IDEiD~l~~~~~~~~~ 296 (480)
... .+.+.-.+...+.. .....+||+|||+.+. ...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-----~~~ 144 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-----DHI 144 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-----HHH
Confidence 100 01222222222110 1234699999999873 345
Q ss_pred hhhhhhhccccc---c-----cccCCceEEEEecCCCc-cCcccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 011664 297 LSGVLNFMDGVL---N-----SCCFEERVMVFTMNSKD-HVDQALLRPGRIDVHIHFPLCDF-SSFKTLASSYLG 361 (480)
Q Consensus 297 ls~lL~~ldg~~---~-----~~~~~~~ivI~tTN~~~-~LD~aLlrpGRfd~~I~~~~p~~-~~r~~il~~~l~ 361 (480)
++.|++.|+.-. . .......++|+|+|..+ .+.++|+. ||...|.+++|.. +++.+++.+...
T Consensus 145 q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 145 VDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 566777764211 0 01123345666777544 58999999 9999999999988 889999987643
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.3e-10 Score=118.11 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=108.2
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------cEEEEeCC-
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY--------DVYDVDLS- 258 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~--------~~~~i~~s- 258 (480)
+|++|+|++.+++.+...+. ....+..|||+||+|+|||++|+++|+.+-+ +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 69999999999998876552 1234568999999999999999999996522 44444431
Q ss_pred -CcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCccc
Q 011664 259 -RVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQA 331 (480)
Q Consensus 259 -~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~a 331 (480)
.-.+-.+++.+.... ....|++|||+|.+. ....+.||..++.- +++.++|++|+.++.+-|.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----~~a~naLLK~LEep-----p~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----EQAQNAFLKTIEEP-----PKGVFIILLCENLEQILDT 139 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----HHHHHHHHHHhcCC-----CCCeEEEEEeCChHhCcHH
Confidence 122334566665422 245799999999873 23456788888642 4567788888889999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 332 LLRPGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 332 LlrpGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
+++ |+. .++|+.|+.++....+....
T Consensus 140 I~S--Rc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKS--RCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHh--hce-eeeCCCcCHHHHHHHHHHHh
Confidence 999 884 99999999998877776554
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=4.7e-11 Score=136.40 Aligned_cols=161 Identities=20% Similarity=0.350 Sum_probs=111.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADL 266 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l 266 (480)
..|+|++.+.+.+.+.+......- .. ...+...+||+||||||||++|+++|..+ +.+++.++++.+.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 568999999999888776542110 00 01133468999999999999999999977 468999999876543333
Q ss_pred HHHH------------------HhhcCCcEEEEecccccccCcccccchhhhhhhcc-cccc-----cccCCceEEEEec
Q 011664 267 KSLL------------------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-GVLN-----SCCFEERVMVFTM 322 (480)
Q Consensus 267 ~~l~------------------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-g~~~-----~~~~~~~ivI~tT 322 (480)
..++ .+....+||+|||||.+- ....+.|++.|+ |... .....+.+||+||
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 2221 122355899999999763 334566777774 2211 0123567899999
Q ss_pred CCCcc-------------------------CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 323 NSKDH-------------------------VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 323 N~~~~-------------------------LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|.... +.|.|+. |+|.++.|.+++.+....|+...+.
T Consensus 716 n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 716 NLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 96211 2356666 9999999999999999999887764
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.28 E-value=3.7e-11 Score=136.97 Aligned_cols=174 Identities=21% Similarity=0.355 Sum_probs=117.7
Q ss_pred cceeCCCCCCC-------------CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHH
Q 011664 177 RWRSVPFTHPS-------------TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAA 243 (480)
Q Consensus 177 ~w~~v~~~~~~-------------~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~a 243 (480)
.|..+|...-. -.+.|+|++.+.+.|...+......-. .. ..+...+||+||||||||++|++
T Consensus 542 ~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~---~~-~~p~~~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 542 RWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLS---DP-NRPIGSFLFLGPTGVGKTELCKA 617 (857)
T ss_pred HHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhccc---CC-CCCCceEEEECCCCCCHHHHHHH
Confidence 58888765321 245789999999998888765421100 00 01223689999999999999999
Q ss_pred HHHcC---CCcEEEEeCCCcCChHHHHHHH---------------H---hhcCCcEEEEecccccccCcccccchhhhhh
Q 011664 244 MASFM---SYDVYDVDLSRVADDADLKSLL---------------L---QTTSKSVILIEDLDRFLVEKPAAVSLSGVLN 302 (480)
Q Consensus 244 iA~~l---~~~~~~i~~s~~~~~~~l~~l~---------------~---~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~ 302 (480)
+|..+ +.+++.++++.+........++ . +..+.+||+|||++.+- ....+.|++
T Consensus 618 La~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----~~v~~~Ll~ 692 (857)
T PRK10865 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----PDVFNILLQ 692 (857)
T ss_pred HHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----HHHHHHHHH
Confidence 99977 4578999988765433333222 1 12345899999999763 234566677
Q ss_pred hcc-cccc-----cccCCceEEEEecCCC-------------------------ccCcccccCCCceeEEEEcCCCCHHH
Q 011664 303 FMD-GVLN-----SCCFEERVMVFTMNSK-------------------------DHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 303 ~ld-g~~~-----~~~~~~~ivI~tTN~~-------------------------~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
.++ |... .....+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+.
T Consensus 693 ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~ed 770 (857)
T PRK10865 693 VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQH 770 (857)
T ss_pred HHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHH
Confidence 664 2111 0112456789999962 124568887 999999999999999
Q ss_pred HHHHHHHHhc
Q 011664 352 FKTLASSYLG 361 (480)
Q Consensus 352 r~~il~~~l~ 361 (480)
...|++.++.
T Consensus 771 l~~Iv~~~L~ 780 (857)
T PRK10865 771 IASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHHH
Confidence 9999888874
No 146
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=4e-11 Score=112.74 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=89.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC------------------------cEEEEeCCC-cCChHHHHHHHHhh----
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY------------------------DVYDVDLSR-VADDADLKSLLLQT---- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~------------------------~~~~i~~s~-~~~~~~l~~l~~~~---- 273 (480)
.+..+|||||||+|||++|+++|+.+.. ++..++... -.+-..++.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4568999999999999999999998633 234443322 12334555555332
Q ss_pred --cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHH
Q 011664 274 --TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 274 --~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
..+.||+|||+|.+.. ...+.||..|+.. ++..++|++||.+..+.+++++ |+. .+++++|+.++
T Consensus 93 ~~~~~kviiide~~~l~~-----~~~~~Ll~~le~~-----~~~~~~il~~~~~~~l~~~i~s--r~~-~~~~~~~~~~~ 159 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE-----AAANALLKTLEEP-----PPNTLFILITPSPEKLLPTIRS--RCQ-VLPFPPLSEEA 159 (188)
T ss_pred ccCCeEEEEEechhhhCH-----HHHHHHHHHhcCC-----CCCeEEEEEECChHhChHHHHh--hcE-EeeCCCCCHHH
Confidence 2457999999998842 3356688888652 3456778888888999999999 884 89999999999
Q ss_pred HHHHHHHH
Q 011664 352 FKTLASSY 359 (480)
Q Consensus 352 r~~il~~~ 359 (480)
...++...
T Consensus 160 ~~~~l~~~ 167 (188)
T TIGR00678 160 LLQWLIRQ 167 (188)
T ss_pred HHHHHHHc
Confidence 88777665
No 147
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.28 E-value=2.2e-10 Score=123.63 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=120.1
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHh---h--------------hhHHh----hhCCCCCceEEEEccCCCcHHH
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLK---A--------------KHYYH----RLGRVWKRSYLLYGPSGTGKSS 239 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~---~--------------~~~~~----~~g~~~~rgiLL~GPpGTGKT~ 239 (480)
|..-.|..|.++.|++.+-..+...+..|=- + ++.+. ..+.|.++-+||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4666889999999999999999888875510 1 01111 1245667788999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHh----------hcCCcEEEEecccccccCcccccchhhhhhhcc----
Q 011664 240 FAAAMASFMSYDVYDVDLSRVADDADLKSLLLQ----------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD---- 305 (480)
Q Consensus 240 La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~----------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld---- 305 (480)
||+.||+.+|+.++.|+.|+-.+...+++.+.. -.+|..|+|||||.-. ...+..++..+.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----~~~Vdvilslv~a~~k 416 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----RAAVDVILSLVKATNK 416 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----HHHHHHHHHHHHhhcc
Confidence 999999999999999999998876666554422 1478899999999532 111122222221
Q ss_pred ---ccccc---------ccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCC
Q 011664 306 ---GVLNS---------CCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHK 366 (480)
Q Consensus 306 ---g~~~~---------~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~ 366 (480)
|-... ...=.|-||+.+|.. .-|||+----+-..|+|+.|......+-++..+..++..
T Consensus 417 ~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 417 QATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred hhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 11110 000125688888853 357775222577899999999887666666666555443
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=5.1e-11 Score=122.00 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=90.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHH--HHh----------hcCC------cEEEEeccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSL--LLQ----------TTSK------SVILIEDLD 285 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l--~~~----------~~~~------sII~IDEiD 285 (480)
.+.+||-||||||||++|+++|..++.+++.+.|+.-...+++.-. +.. ...| +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4579999999999999999999999999999999866554442111 110 0111 399999999
Q ss_pred ccccCcccccchhhhhhhcccc----ccc---ccCCceEEEEecC-----CCccCcccccCCCceeEEEEcCCC-CHHHH
Q 011664 286 RFLVEKPAAVSLSGVLNFMDGV----LNS---CCFEERVMVFTMN-----SKDHVDQALLRPGRIDVHIHFPLC-DFSSF 352 (480)
Q Consensus 286 ~l~~~~~~~~~ls~lL~~ldg~----~~~---~~~~~~ivI~tTN-----~~~~LD~aLlrpGRfd~~I~~~~p-~~~~r 352 (480)
.. ...+.+.||..|+.- ... .-....++|+|+| .-..|++|+++ ||-..+++++| +.++.
T Consensus 123 ra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~ 195 (329)
T COG0714 123 RA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEE 195 (329)
T ss_pred cC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHH
Confidence 65 345567777777541 110 1123445666778 34568999999 99999999999 55555
Q ss_pred HHHHHHHhc
Q 011664 353 KTLASSYLG 361 (480)
Q Consensus 353 ~~il~~~l~ 361 (480)
..+......
T Consensus 196 ~~i~~~~~~ 204 (329)
T COG0714 196 RIILARVGG 204 (329)
T ss_pred HHHHHhCcc
Confidence 555555443
No 149
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=4.7e-12 Score=112.91 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=71.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHH---------------hhcCCcEEEEecccccccC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLL---------------QTTSKSVILIEDLDRFLVE 290 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~---------------~~~~~sII~IDEiD~l~~~ 290 (480)
++||+||||||||++|+.+|..++.+++.+.++...+..++..... ....++|++||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 5899999999999999999999999999999988776655422110 11257899999999652
Q ss_pred cccccchhhhhhhccccccc-------c-cCC------ceEEEEecCCCc----cCcccccCCCce
Q 011664 291 KPAAVSLSGVLNFMDGVLNS-------C-CFE------ERVMVFTMNSKD----HVDQALLRPGRI 338 (480)
Q Consensus 291 ~~~~~~ls~lL~~ldg~~~~-------~-~~~------~~ivI~tTN~~~----~LD~aLlrpGRf 338 (480)
...+..|+..++.-.-. . ... +..+|+|+|..+ .+++||++ ||
T Consensus 79 ---~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23334444444321100 0 011 367889999888 89999999 87
No 150
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.26 E-value=1e-11 Score=125.71 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHH------------------HHH-HhhcCCcEEEEec
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLK------------------SLL-LQTTSKSVILIED 283 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~------------------~l~-~~~~~~sII~IDE 283 (480)
..+.+||.||||||||++++++|..++.+++.++++......++. ..+ .....++++++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 356899999999999999999999999999999876544322110 011 1124678899999
Q ss_pred ccccccCcccccchhhhhhhccc--------ccccc-cCCceEEEEecCCCc------------cCcccccCCCceeEEE
Q 011664 284 LDRFLVEKPAAVSLSGVLNFMDG--------VLNSC-CFEERVMVFTMNSKD------------HVDQALLRPGRIDVHI 342 (480)
Q Consensus 284 iD~l~~~~~~~~~ls~lL~~ldg--------~~~~~-~~~~~ivI~tTN~~~------------~LD~aLlrpGRfd~~I 342 (480)
+|..-+ .+++.|...++. ..... ....-.+|+|+|..+ .+++|++. ||-.++
T Consensus 143 in~a~p-----~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~ 215 (327)
T TIGR01650 143 YDAGRP-----DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVT 215 (327)
T ss_pred hhccCH-----HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEe
Confidence 997632 233443333331 10101 122445788888754 36889999 998889
Q ss_pred EcCCCCHHHHHHHHHHHh
Q 011664 343 HFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 343 ~~~~p~~~~r~~il~~~l 360 (480)
.++||+.+.-.+|+....
T Consensus 216 ~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 216 TLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eCCCCCHHHHHHHHHhhc
Confidence 999999999999987664
No 151
>PHA02244 ATPase-like protein
Probab=99.25 E-value=6.5e-11 Score=121.25 Aligned_cols=120 Identities=19% Similarity=0.337 Sum_probs=78.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC----CcC----ChHHHH--HHHHhhcCCcEEEEecccccccCcccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS----RVA----DDADLK--SLLLQTTSKSVILIEDLDRFLVEKPAA 294 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s----~~~----~~~~l~--~l~~~~~~~sII~IDEiD~l~~~~~~~ 294 (480)
..+||+||||||||++|+++|..++.+++.++.. .+. ....+. .++.......+|+|||++.+.++ ..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~--vq 197 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPE--AL 197 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHH--HH
Confidence 4699999999999999999999999999988732 011 000111 22333467899999999976421 11
Q ss_pred cchhhhh-----hhcccccccccCCceEEEEecCCC-----------ccCcccccCCCceeEEEEcCCCCHHH
Q 011664 295 VSLSGVL-----NFMDGVLNSCCFEERVMVFTMNSK-----------DHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 295 ~~ls~lL-----~~ldg~~~~~~~~~~ivI~tTN~~-----------~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
..+..++ ...++... ...+..+|+|+|.+ ..|++|++. || .+|++++|+..+
T Consensus 198 ~~L~~lLd~r~l~l~g~~i~--~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 198 IIINSAIANKFFDFADERVT--AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred HHHHHHhccCeEEecCcEEe--cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcHHH
Confidence 2222222 12222211 12456788888863 568999999 99 589999998433
No 152
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.23 E-value=9.5e-11 Score=120.21 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=100.4
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-------CcEE-----
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-------YDVY----- 253 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-------~~~~----- 253 (480)
.-+|++|+|++++|..|.-.+..+ ...|+||.||+|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 347999999999999988655432 335899999999999999999987652 1111
Q ss_pred ----------------------------EEeCC----CcCChHHHHHHHHh-----------hcCCcEEEEecccccccC
Q 011664 254 ----------------------------DVDLS----RVADDADLKSLLLQ-----------TTSKSVILIEDLDRFLVE 290 (480)
Q Consensus 254 ----------------------------~i~~s----~~~~~~~l~~l~~~-----------~~~~sII~IDEiD~l~~~ 290 (480)
.+..+ .+.+.-++.+.|.. .....+||+|||+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 11110 01111122222211 1235899999999874
Q ss_pred cccccchhhhhhhccc---------ccccccCCceEEEEecCCCc-cCcccccCCCceeEEEEcCCCC-HHHHHHHHHHH
Q 011664 291 KPAAVSLSGVLNFMDG---------VLNSCCFEERVMVFTMNSKD-HVDQALLRPGRIDVHIHFPLCD-FSSFKTLASSY 359 (480)
Q Consensus 291 ~~~~~~ls~lL~~ldg---------~~~~~~~~~~ivI~tTN~~~-~LD~aLlrpGRfd~~I~~~~p~-~~~r~~il~~~ 359 (480)
....+.|++.|+. ... ......++|+|.|..+ .+.++|+. ||..++.+.+|+ .+.+.+|+++.
T Consensus 158 ---~~~Q~~LLeam~e~~~~ier~G~s~-~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 158 ---DHLVDILLDSAASGWNTVEREGISI-RHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred ---HHHHHHHHHHHHhCCeEEeeCCeee-ecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhh
Confidence 2344667776642 111 1122334445556444 58999999 999999999998 58999999876
Q ss_pred h
Q 011664 360 L 360 (480)
Q Consensus 360 l 360 (480)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 4
No 153
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.8e-10 Score=119.30 Aligned_cols=154 Identities=14% Similarity=0.225 Sum_probs=109.3
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc-----EEEEeCCCcCChH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD-----VYDVDLSRVADDA 264 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~-----~~~i~~s~~~~~~ 264 (480)
+.+.+-++..+.+...+..++.+. .|.++++|||||||||..++-++.++... +++|||-...+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 348888888888887766655442 34469999999999999999999987443 8999987665432
Q ss_pred HH-------------------------HHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEE
Q 011664 265 DL-------------------------KSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMV 319 (480)
Q Consensus 265 ~l-------------------------~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI 319 (480)
.+ .+.+.......||++||+|.+....+ ..+-.|+...+.. ...+.+|
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--~~LY~L~r~~~~~-----~~~v~vi 160 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--EVLYSLLRAPGEN-----KVKVSII 160 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--hHHHHHHhhcccc-----ceeEEEE
Confidence 21 11122223567999999999976544 3444444433222 2345677
Q ss_pred EecCCC---ccCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 011664 320 FTMNSK---DHVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 320 ~tTN~~---~~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~ 361 (480)
+.+|.. +.+||.+.+ ++. .+|.||+++.++...|+.....
T Consensus 161 ~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred EEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 777754 578999988 775 6799999999999999988765
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=1.7e-10 Score=131.41 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=108.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADL 266 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l 266 (480)
+.|+|++++.+.|...+.....+- .. ...+...+||+||||||||++|+++|..+ +.+++.++++++.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 568899999998887775432110 00 01122358999999999999999999987 467899998876532222
Q ss_pred HHH----------------H--HhhcCCcEEEEecccccccCcccccchhhhhhhccc-cccc-----ccCCceEEEEec
Q 011664 267 KSL----------------L--LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG-VLNS-----CCFEERVMVFTM 322 (480)
Q Consensus 267 ~~l----------------~--~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg-~~~~-----~~~~~~ivI~tT 322 (480)
..+ . .+..+.+||+|||+|... ....+.|+..||. .... ....+.+||+||
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~-----~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH-----PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC-----HHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 211 1 122345899999999763 3345667777763 2110 113567899999
Q ss_pred CCCcc-------------------------------------CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 323 NSKDH-------------------------------------VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 323 N~~~~-------------------------------------LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|.... +.|.++. |+|.+|.|.+.+.++..+|+...+.
T Consensus 660 n~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 660 NLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred CcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 84311 1245666 9999999999999999999888774
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.1e-10 Score=121.25 Aligned_cols=191 Identities=12% Similarity=0.167 Sum_probs=119.2
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEe
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVD 256 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~ 256 (480)
.+.+.-||++.+..+.-..... ....+- ...|. ....++||||+|+|||+|++|++++.. ..++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~a-a~~~va------~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYA-AAKAVA------ENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHHH-HHHHHH------hccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 4556678999755544333222 111111 12232 344799999999999999999999762 3456665
Q ss_pred CCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC-
Q 011664 257 LSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV- 328 (480)
Q Consensus 257 ~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L- 328 (480)
...+..+ ..+.+.=... +-.+++||||+.+.+....+ .+|...+..+.. .++.|++.+...|..+
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~q---eefFh~FN~l~~---~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQ---EEFFHTFNALLE---NGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHH---HHHHHHHHHHHh---cCCEEEEEcCCCchhhc
Confidence 4433211 1111111223 66799999999987654444 444444444443 3445555555566554
Q ss_pred --cccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHH-HHHhCCCCCHHHHHHHH
Q 011664 329 --DQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEE-IFQNGSSLSPAEIGELM 390 (480)
Q Consensus 329 --D~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~-l~~~~~g~s~adI~~ll 390 (480)
+|.|++ ||. ..+.+.+|+.+.|.++++......+..+.+++.. ++.+. .-+..++...+
T Consensus 224 ~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL 287 (408)
T COG0593 224 GLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGAL 287 (408)
T ss_pred cccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHH
Confidence 689999 997 8899999999999999999888888888877643 44332 33444444433
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.7e-11 Score=130.68 Aligned_cols=157 Identities=22% Similarity=0.359 Sum_probs=117.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCC----CCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeCCCcCC
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRV----WKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDLSRVAD 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~----~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~s~~~~ 262 (480)
..|+|++++.+.+.+.+..- +.|+. |-.++||.||+|+|||.||+++|..+. ..++.+|+|+++.
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 56899999999888877654 22322 334688899999999999999999986 7899999999987
Q ss_pred hHHHHHHHHh------------------hcCCcEEEEecccccccCcccccchhhhhhhcc-ccccc-----ccCCceEE
Q 011664 263 DADLKSLLLQ------------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-GVLNS-----CCFEERVM 318 (480)
Q Consensus 263 ~~~l~~l~~~------------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-g~~~~-----~~~~~~iv 318 (480)
...+.+++.. ..+.|||++|||+.- ....++-||+.|| |...+ ....+.||
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----CHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 7777776522 234699999999964 4456677888886 22221 22345689
Q ss_pred EEecCCCc----------------------------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 319 VFTMNSKD----------------------------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 319 I~tTN~~~----------------------------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
|||||--. ...|+++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 99998320 02355666 9999999999999999999988775
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.19 E-value=8.8e-11 Score=115.15 Aligned_cols=130 Identities=17% Similarity=0.288 Sum_probs=81.6
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+..+..+|++.....+-.+.+...+..+... +.. ...+++|+||||||||+|+.|||+++ +..++.+++.
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEE---FDG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHh---hcc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 3445678999865544444445455555432 111 13489999999999999999999987 7788888876
Q ss_pred CcCC---------hHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 259 RVAD---------DADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 259 ~~~~---------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
++.. +.....++......++|+|||+++.......... +...++.-. ....-+|+|||..
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~---l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 137 DIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVI---INQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHH---HHHHHHHHH----hCCCCEEEeCCCC
Confidence 6542 1122345555667899999999986422212222 333444322 2345678889843
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.19 E-value=1.6e-10 Score=118.39 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=100.1
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------CCcEE-------
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-------SYDVY------- 253 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~------- 253 (480)
.|..|+|++++|..+.-.+..+ ...+++|.||||||||++++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4889999999999886544332 23579999999999999999999766 22111
Q ss_pred ------E------------------EeCC------CcCChHHHHHHHH-----------hhcCCcEEEEecccccccCcc
Q 011664 254 ------D------------------VDLS------RVADDADLKSLLL-----------QTTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 254 ------~------------------i~~s------~~~~~~~l~~l~~-----------~~~~~sII~IDEiD~l~~~~~ 292 (480)
. +++. .+.+.-++...+. ....+.+||||||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 1111 1222223333221 12345899999999873
Q ss_pred cccchhhhhhhccc---------ccccccCCceEEEEecCCCc-cCcccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 011664 293 AAVSLSGVLNFMDG---------VLNSCCFEERVMVFTMNSKD-HVDQALLRPGRIDVHIHFPLCDF-SSFKTLASSYLG 361 (480)
Q Consensus 293 ~~~~ls~lL~~ldg---------~~~~~~~~~~ivI~tTN~~~-~LD~aLlrpGRfd~~I~~~~p~~-~~r~~il~~~l~ 361 (480)
....+.|++.|+. ... ......++|+|+|..+ .+.++|+. ||..++.+++|+. +++.+|+++...
T Consensus 145 -~~~Q~~Ll~~l~~g~~~v~r~G~~~-~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 145 -DHLVDVLLDVAASGWNVVEREGISI-RHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred -HHHHHHHHHHHHhCCeEEEECCEEE-EcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 3345666776642 211 1122345555666444 68999999 9999999999986 888999987543
No 159
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.19 E-value=8.2e-11 Score=133.90 Aligned_cols=157 Identities=18% Similarity=0.289 Sum_probs=108.2
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCC-CCCc-eEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGR-VWKR-SYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~-~~~r-giLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
..|+|++++.+.+.+.+.....+ +.. ..|. .+||+||||||||.+|+++|..+ +..++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 47899999999998888654211 111 1233 47999999999999999999988 4578899987664322
Q ss_pred H-------------------HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccc-c-----cccCCceEEE
Q 011664 265 D-------------------LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-N-----SCCFEERVMV 319 (480)
Q Consensus 265 ~-------------------l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~-----~~~~~~~ivI 319 (480)
. +...+ +..+.+||+|||||... ....+-|++.+|.-. . .....+.+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v-~~~p~svvllDEieka~-----~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAV-RRKPYSVVLLDEVEKAH-----PDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhccccCCCCCcccccccchHHHHH-HhCCCcEEEEechhhcC-----HHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 2 22222 23577999999999653 234455666665221 1 0112467899
Q ss_pred EecCCCc-----------------------------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 320 FTMNSKD-----------------------------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 320 ~tTN~~~-----------------------------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
+|||... .+.|+++. |++ .|.|.+.+.++..+|+...+.
T Consensus 714 ~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 714 LTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 9998421 14467777 998 899999999999999988764
No 160
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=1.2e-10 Score=115.97 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=78.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh----------HHHHHHHHhhcCCcEEEEecccccccC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD----------ADLKSLLLQTTSKSVILIEDLDRFLVE 290 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~----------~~l~~l~~~~~~~sII~IDEiD~l~~~ 290 (480)
..|++||||||||||+||.|||+++ +.+++.++.+++... .....++.......+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~-- 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER-- 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCC--
Confidence 4589999999999999999999976 778888886654321 1122344445567899999997532
Q ss_pred cccccchhhhhhhcccccccccCCceEEEEecCCC-cc----CcccccCCCce---eEEEEcCCCCH
Q 011664 291 KPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK-DH----VDQALLRPGRI---DVHIHFPLCDF 349 (480)
Q Consensus 291 ~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~-~~----LD~aLlrpGRf---d~~I~~~~p~~ 349 (480)
.+......|.+.++.... .+..+|+|||.+ +. +++++.+ |+ ...|.++-++.
T Consensus 192 -~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 -DTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred -CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 223344566777765443 345578888854 34 4677777 75 35577777765
No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=1.8e-09 Score=110.56 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=130.3
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
.+++++|....-+.+.+.+...... ...|||+|++||||+++|++|.... +.+|+.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 4678999998888888887766432 3469999999999999999998765 46899999998753 3
Q ss_pred HHH-HHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc-----ccCCceEEEE
Q 011664 265 DLK-SLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS-----CCFEERVMVF 320 (480)
Q Consensus 265 ~l~-~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~-----~~~~~~ivI~ 320 (480)
.+. .+|. .......|||||||.+.. .....|++.++.-. .. .......||+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~-----~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 146 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----LVQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH-----HHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 332 2221 123467899999998842 23345555554211 10 0011345677
Q ss_pred ecCCC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHh-CCCCCHHHHHHH
Q 011664 321 TMNSK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQN-GSSLSPAEIGEL 389 (480)
Q Consensus 321 tTN~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~-~~g~s~adI~~l 389 (480)
||+.. ..+.+.|.. ||. ..|.+|+... ++...|+..|+.... ..+... ..+++++-+..+
T Consensus 147 ~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~-------~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 147 ATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMC-------RELGLPLFPGFTERARETL 217 (326)
T ss_pred eCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHH-------HHhCCCCCCCCCHHHHHHH
Confidence 66642 345567776 774 5667766543 344556666653211 111111 148999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhc
Q 011664 390 MIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~~ 411 (480)
....+...++.|+.+++.+-..
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999876553
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.12 E-value=1e-09 Score=112.49 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=121.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHHHH
Q 011664 193 SMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLKSL 269 (480)
Q Consensus 193 ~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~~l 269 (480)
+|....-+.+.+.+..... ....|||+|++||||+++|++|.... +.+|+.++|..+..+.--..+
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4555556666666655422 23479999999999999999998755 468999999876542211233
Q ss_pred HH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc-----ccCCceEEEEecCCC-
Q 011664 270 LL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS-----CCFEERVMVFTMNSK- 325 (480)
Q Consensus 270 ~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~-----~~~~~~ivI~tTN~~- 325 (480)
|. ......+|||||||.+.. .....|+..++.-. .. ....+.-+|+|||..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~-----~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL-----LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred hccccccccCcccccCCchhhCCCCEEEeCChHhCCH-----HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH
Confidence 31 123568999999998842 23345555553211 00 001234567777632
Q ss_pred ------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhC-CCCCHHHHHHHHHHhhh
Q 011664 326 ------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNG-SSLSPAEIGELMIANRN 395 (480)
Q Consensus 326 ------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~-~g~s~adI~~ll~~a~~ 395 (480)
..+.+.|.. |+. ..|++|+... ++...|+..|+.... ....... .++++.-+..++...+.
T Consensus 146 ~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~-------~~~~~~~~~~ls~~a~~~L~~y~WP 216 (329)
T TIGR02974 146 PALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMA-------RELGLPLFPGFTPQAREQLLEYHWP 216 (329)
T ss_pred HHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHH-------HHhCCCCCCCcCHHHHHHHHhCCCC
Confidence 234566666 774 4556665542 345556666653210 1111122 48999999999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q 011664 396 SPSRALKSVITALQTD 411 (480)
Q Consensus 396 ~~~~al~~~i~~~~~~ 411 (480)
..++.|+++++.+-..
T Consensus 217 GNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 217 GNVRELKNVVERSVYR 232 (329)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999876654
No 163
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.3e-09 Score=111.79 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=103.8
Q ss_pred Ccccccc-ChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC----------------
Q 011664 188 TFDTISM-ETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY---------------- 250 (480)
Q Consensus 188 ~~~~i~g-~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~---------------- 250 (480)
.|++|.| ++.+++.+...+. ....+..+|||||+|+||+++|+++|+.+-+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788888 8878887775543 1224668999999999999999999987522
Q ss_pred --------cEEEEeCCC-cCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCc
Q 011664 251 --------DVYDVDLSR-VADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEE 315 (480)
Q Consensus 251 --------~~~~i~~s~-~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~ 315 (480)
++..+.... -.+-.+++.+.... ....|++|||+|.+. ....+.||..|+.- ++.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----~~a~NaLLK~LEEP-----p~~ 140 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----ASAANSLLKFLEEP-----SGG 140 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----HHHHHHHHHHhcCC-----CCC
Confidence 244443321 12234555554322 245799999999873 23457788888642 456
Q ss_pred eEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 011664 316 RVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASS 358 (480)
Q Consensus 316 ~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~ 358 (480)
.++|++|+.+..|-|++++ |+ .+++|++|+.++....+..
T Consensus 141 ~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 7788889899999999999 88 4899999999887666653
No 164
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=1.5e-09 Score=118.26 Aligned_cols=200 Identities=18% Similarity=0.190 Sum_probs=130.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~ 262 (480)
..+|+.++|.....+.+.+.+..... ....+||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35789999999999998888776542 23469999999999999999999875 56899999998754
Q ss_pred hHHHHHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cccc-----CCceEEE
Q 011664 263 DADLKSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NSCC-----FEERVMV 319 (480)
Q Consensus 263 ~~~l~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~~~-----~~~~ivI 319 (480)
+.--..+|. ......+|||||||.+.. .....|+..++.-. .... ....-+|
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-----~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-----AFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-----HHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 221222332 123467999999998842 23355666664211 1000 0124466
Q ss_pred EecCCC-c------cCcccccCCCcee-EEEEcCCCC--HHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHH
Q 011664 320 FTMNSK-D------HVDQALLRPGRID-VHIHFPLCD--FSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGEL 389 (480)
Q Consensus 320 ~tTN~~-~------~LD~aLlrpGRfd-~~I~~~~p~--~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~l 389 (480)
+||+.. + .+.+.|.. |+. ..|.+|+.. .++...|+..++.... ...... .++|++-+..+
T Consensus 336 ~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~-------~~~~~~-~~~s~~a~~~L 405 (534)
T TIGR01817 336 AATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFN-------RENGRP-LTITPSAIRVL 405 (534)
T ss_pred EeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHH-------HHcCCC-CCCCHHHHHHH
Confidence 666532 1 23344444 554 466777665 3455667777764211 011112 48999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhc
Q 011664 390 MIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~~ 411 (480)
....+...++.|+.+++.+-..
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHh
Confidence 9989999999999999876543
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.12 E-value=2.5e-10 Score=98.84 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=73.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCCCcCC--------------------hHHHHHHHHhh--cCCcE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLSRVAD--------------------DADLKSLLLQT--TSKSV 278 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s~~~~--------------------~~~l~~l~~~~--~~~sI 278 (480)
+..++|+||||||||++++++|..+... ++.++++.... .......+..+ ..+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 88888765321 22233333332 34699
Q ss_pred EEEecccccccCcccccchhhh-hhhcccccccccCCceEEEEecCC-CccCcccccCCCceeEEEEcCCC
Q 011664 279 ILIEDLDRFLVEKPAAVSLSGV-LNFMDGVLNSCCFEERVMVFTMNS-KDHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 279 I~IDEiD~l~~~~~~~~~ls~l-L~~ldg~~~~~~~~~~ivI~tTN~-~~~LD~aLlrpGRfd~~I~~~~p 347 (480)
|+|||++.+............. ....... .......+|+++|. ....+..+.+ |++.++.++.+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL---KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhhhHHHHHH---HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999886433211110000 0000111 11345677888886 3344555555 88888887655
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=2.6e-09 Score=108.71 Aligned_cols=175 Identities=13% Similarity=0.140 Sum_probs=117.3
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-----------------
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY----------------- 250 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~----------------- 250 (480)
.|++|+|++++++.+...+.. | ..+..+||+||+|+||+++|.++|+.+-+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999988876542 2 23558999999999999999999987521
Q ss_pred -cEEEEeCCC-----c------------------CChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhh
Q 011664 251 -DVYDVDLSR-----V------------------ADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGV 300 (480)
Q Consensus 251 -~~~~i~~s~-----~------------------~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~l 300 (480)
+++.+.... . ..-..++.+.... ....|++||++|.+. ....+.|
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----~~aaNaL 144 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----EAAANAL 144 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----HHHHHHH
Confidence 223332210 0 0112345543222 246899999999883 2344678
Q ss_pred hhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCC
Q 011664 301 LNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSS 380 (480)
Q Consensus 301 L~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g 380 (480)
|..|+.- + ..++|++|+.++.|-|.+++ |+ ..++|+.++.++..+++........ ...+...++.. .+
T Consensus 145 LK~LEEP-----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~-a~ 212 (314)
T PRK07399 145 LKTLEEP-----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL-AQ 212 (314)
T ss_pred HHHHhCC-----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH-cC
Confidence 8887542 3 45788888899999999999 98 5899999999998888887643221 11123445443 35
Q ss_pred CCHHHHHHHHH
Q 011664 381 LSPAEIGELMI 391 (480)
Q Consensus 381 ~s~adI~~ll~ 391 (480)
-+|....+++.
T Consensus 213 Gs~~~al~~l~ 223 (314)
T PRK07399 213 GSPGAAIANIE 223 (314)
T ss_pred CCHHHHHHHHH
Confidence 56665555553
No 167
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=8.3e-10 Score=115.94 Aligned_cols=113 Identities=27% Similarity=0.376 Sum_probs=69.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc-----EEEEeCC------CcC-C-----------hHHHHHHHHhh----cCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD-----VYDVDLS------RVA-D-----------DADLKSLLLQT----TSK 276 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~-----~~~i~~s------~~~-~-----------~~~l~~l~~~~----~~~ 276 (480)
+++++|+||||||||++|+++|..++.. +..+..+ ++. + ...+.++..++ ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999987431 1122221 111 0 11122222222 357
Q ss_pred cEEEEecccccccCcccccchhhhhhhcc--------------------cccccccCCceEEEEecCCCc----cCcccc
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMD--------------------GVLNSCCFEERVMVFTMNSKD----HVDQAL 332 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ld--------------------g~~~~~~~~~~ivI~tTN~~~----~LD~aL 332 (480)
++||||||+..-.. ....+++..|+ .+. -+.+..||+|+|..+ .+|.||
T Consensus 274 ~vliIDEINRani~----kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~---iP~Nl~IIgTMNt~Drs~~~lD~Al 346 (459)
T PRK11331 274 YVFIIDEINRANLS----KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFY---VPENVYIIGLMNTADRSLAVVDYAL 346 (459)
T ss_pred cEEEEehhhccCHH----Hhhhhhhhhccccccccccceeeecccccccccc---CCCCeEEEEecCccccchhhccHHH
Confidence 99999999964221 11223333332 111 246778899999887 689999
Q ss_pred cCCCceeEEEEcCC
Q 011664 333 LRPGRIDVHIHFPL 346 (480)
Q Consensus 333 lrpGRfd~~I~~~~ 346 (480)
+| ||. .|++.+
T Consensus 347 rR--RF~-fi~i~p 357 (459)
T PRK11331 347 RR--RFS-FIDIEP 357 (459)
T ss_pred Hh--hhh-eEEecC
Confidence 99 995 566654
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.5e-09 Score=108.39 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=93.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC------------------------cEEEEeCC---CcCChHHHHHHHHhh--
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY------------------------DVYDVDLS---RVADDADLKSLLLQT-- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~------------------------~~~~i~~s---~~~~~~~l~~l~~~~-- 273 (480)
.+.++||+||+|+|||++|.++|+.+.+ +++.+... ...+-.+++.+....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999987633 45555432 223445666665332
Q ss_pred ----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCH
Q 011664 274 ----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 274 ----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
....|++||++|.+- ....+.||..|+.- +++.++|++|+.++.|.|.+++ |+. .+.|++|+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~-----~~aaNaLLK~LEEP-----p~~~~fiL~t~~~~~ll~TI~S--Rc~-~~~~~~~~~ 167 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN-----RNAANALLKSLEEP-----SGDTVLLLISHQPSRLLPTIKS--RCQ-QQACPLPSN 167 (328)
T ss_pred ccccCCCeEEEECChhhCC-----HHHHHHHHHHHhCC-----CCCeEEEEEECChhhCcHHHHh--hce-eeeCCCcCH
Confidence 245799999999883 34457788888642 4567888999999999999999 996 699999999
Q ss_pred HHHHHHHHHH
Q 011664 350 SSFKTLASSY 359 (480)
Q Consensus 350 ~~r~~il~~~ 359 (480)
++-.+.+...
T Consensus 168 ~~~~~~L~~~ 177 (328)
T PRK05707 168 EESLQWLQQA 177 (328)
T ss_pred HHHHHHHHHh
Confidence 8877776654
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.07 E-value=8e-10 Score=116.94 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=83.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCC-----CcCChHHHHHH-----HHhh-----cCCcEEEEeccc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLS-----RVADDADLKSL-----LLQT-----TSKSVILIEDLD 285 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s-----~~~~~~~l~~l-----~~~~-----~~~sII~IDEiD 285 (480)
....+||+||||||||++|+++|..++. +|..+.+. ++.+...+... |.+. ....++|+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3457999999999999999999997643 33333221 22222111111 1111 123599999998
Q ss_pred ccccCcccccchhhhhhhcc-ccccc----ccCCceEEEEecCCCc---cCcccccCCCceeEEEEcCCCC-HHHHHHHH
Q 011664 286 RFLVEKPAAVSLSGVLNFMD-GVLNS----CCFEERVMVFTMNSKD---HVDQALLRPGRIDVHIHFPLCD-FSSFKTLA 356 (480)
Q Consensus 286 ~l~~~~~~~~~ls~lL~~ld-g~~~~----~~~~~~ivI~tTN~~~---~LD~aLlrpGRfd~~I~~~~p~-~~~r~~il 356 (480)
.+ +..+.+.||..|. +.... ...+.+++++|||... ...+|+.. ||-.++.+|+|+ .++..+|+
T Consensus 118 ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL 190 (498)
T PRK13531 118 KA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSML 190 (498)
T ss_pred cC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHH
Confidence 54 4566788888883 22110 1123467788888332 23359999 999999999997 56778888
Q ss_pred HHH
Q 011664 357 SSY 359 (480)
Q Consensus 357 ~~~ 359 (480)
...
T Consensus 191 ~~~ 193 (498)
T PRK13531 191 TSQ 193 (498)
T ss_pred Hcc
Confidence 764
No 170
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.07 E-value=3.7e-09 Score=108.34 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCcc-ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------cEEEEeC
Q 011664 187 STFD-TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------DVYDVDL 257 (480)
Q Consensus 187 ~~~~-~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------~~~~i~~ 257 (480)
.-|+ ++.|+++.++++.+.+.....+ . ...++.++|+||||||||+||+++|+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQG------L-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhc------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4577 9999999999988776655421 1 224567899999999999999999999976 8888876
No 171
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.07 E-value=3.1e-09 Score=118.20 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=125.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD 263 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~ 263 (480)
.+|++++|.....+.+.+.+....+. ...+||+|++||||+++|++|.+.. +.+|+.+||..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 46888999888888777776655332 3469999999999999999999875 468999999988653
Q ss_pred HHHHHHHHh--------------hcCCcEEEEecccccccCcccccchhhhhhhccccc-ccccC-----CceEEEEecC
Q 011664 264 ADLKSLLLQ--------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NSCCF-----EERVMVFTMN 323 (480)
Q Consensus 264 ~~l~~l~~~--------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~~~~-----~~~ivI~tTN 323 (480)
.-...+|.. ......||||||+.+.. .....|+..++.-. ....+ -..-||+|||
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-----~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-----ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-----HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEecc
Confidence 323344431 13467999999998842 22345565554211 10001 1234777777
Q ss_pred CC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.. ..+.+.|.- |+. ..|.+|+... ++...|+..++.... ... ....++|+.-+..|....
T Consensus 466 ~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~-------~~~-~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 466 ADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLE-------KRF-STRLKIDDDALARLVSYR 535 (638)
T ss_pred CCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHH-------HHh-CCCCCcCHHHHHHHHcCC
Confidence 43 122233333 442 4455555443 234456666653211 011 112378999999999989
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 011664 394 RNSPSRALKSVITALQTD 411 (480)
Q Consensus 394 ~~~~~~al~~~i~~~~~~ 411 (480)
+...++.|+.+++.+-..
T Consensus 536 WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 536 WPGNDFELRSVIENLALS 553 (638)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999999876544
No 172
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.1e-09 Score=110.74 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=98.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---------------------
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--------------------- 249 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--------------------- 249 (480)
++++.+.+...+....... | ..+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4555666555555443322 1 1233799999999999999999999886
Q ss_pred ---CcEEEEeCCCcCC----hHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCce
Q 011664 250 ---YDVYDVDLSRVAD----DADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEER 316 (480)
Q Consensus 250 ---~~~~~i~~s~~~~----~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ 316 (480)
.+++.++.++... ...++.+.... ....|++|||+|.+.. ...+.++..+.- .....
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----~A~nallk~lEe-----p~~~~ 140 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----DAANALLKTLEE-----PPKNT 140 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----HHHHHHHHHhcc-----CCCCe
Confidence 5788888887655 33354443322 2458999999998843 334566666642 24567
Q ss_pred EEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHH
Q 011664 317 VMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTL 355 (480)
Q Consensus 317 ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~i 355 (480)
.+|++||.++.+-+.+++ |+. .+.|++|+...+...
T Consensus 141 ~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~ 176 (325)
T COG0470 141 RFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAW 176 (325)
T ss_pred EEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHH
Confidence 889999999999999999 884 888888665554433
No 173
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=2.8e-10 Score=105.91 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=72.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC----cEEEEeCCCcCC----hHHHHHHHHhh------cCCcEEEEecccccc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY----DVYDVDLSRVAD----DADLKSLLLQT------TSKSVILIEDLDRFL 288 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~----~~~~i~~s~~~~----~~~l~~l~~~~------~~~sII~IDEiD~l~ 288 (480)
+...+||.||+|||||.+|+++|..+.. +++.+|++.+.. +..+..++... ....||||||||...
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3457899999999999999999999996 999999999887 44455554332 234699999999987
Q ss_pred cCcccc------cchhhhhhhcccccc------cccCCceEEEEecCCCc
Q 011664 289 VEKPAA------VSLSGVLNFMDGVLN------SCCFEERVMVFTMNSKD 326 (480)
Q Consensus 289 ~~~~~~------~~ls~lL~~ldg~~~------~~~~~~~ivI~tTN~~~ 326 (480)
+..+.. .....||..||+-.- ...-.+.++|+|+|.-.
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 632211 235567777753211 12235678999999543
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.8e-09 Score=118.51 Aligned_cols=169 Identities=20% Similarity=0.279 Sum_probs=102.5
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEE-E
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYD-V 255 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~-i 255 (480)
.|. ..-.|.++++++|+++..+.+...+.... .+....+.++|+||||||||++++++|++++..+.. .
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 463 45578999999999998888776554321 122334569999999999999999999999875432 1
Q ss_pred e---CC-----------------Cc-CChHHHHHHHHhh------------cCCcEEEEecccccccCcccccchhhhhh
Q 011664 256 D---LS-----------------RV-ADDADLKSLLLQT------------TSKSVILIEDLDRFLVEKPAAVSLSGVLN 302 (480)
Q Consensus 256 ~---~s-----------------~~-~~~~~l~~l~~~~------------~~~sII~IDEiD~l~~~~~~~~~ls~lL~ 302 (480)
+ +. .+ .....+..++..+ ..+.||+|||++.+... ....+..+|.
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--~~~~lq~lLr 220 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--DTRALHEILR 220 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--hHHHHHHHHH
Confidence 1 00 00 1112233333322 24579999999987642 2223444444
Q ss_pred -hcccccccccCCceEEEEecCCCc----------c----CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC
Q 011664 303 -FMDGVLNSCCFEERVMVFTMNSKD----------H----VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK 363 (480)
Q Consensus 303 -~ldg~~~~~~~~~~ivI~tTN~~~----------~----LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~ 363 (480)
... .. +.-.+|+++|..+. . |.++++..-|+ .+|.|++.+....++.+...+..+
T Consensus 221 ~~~~--e~---~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 221 WKYV--SI---GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHhh--cC---CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 211 11 11223333442221 1 33677743355 489999999999888888887543
No 175
>PRK08181 transposase; Validated
Probab=99.05 E-value=5.5e-10 Score=111.09 Aligned_cols=94 Identities=20% Similarity=0.396 Sum_probs=63.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC-------hHHHHHHHHhhcCCcEEEEecccccccCccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD-------DADLKSLLLQTTSKSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~-------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~ 293 (480)
..+++|+||||||||+|+.|+|+++ |..+++++..++.. +..+.+.+.....+.+|+|||++........
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence 4589999999999999999999754 77788887655443 1223445566678899999999987544333
Q ss_pred ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 294 AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
... |++.++.... ..-+|+|||.+
T Consensus 186 ~~~---Lf~lin~R~~-----~~s~IiTSN~~ 209 (269)
T PRK08181 186 TSV---LFELISARYE-----RRSILITANQP 209 (269)
T ss_pred HHH---HHHHHHHHHh-----CCCEEEEcCCC
Confidence 333 4444443222 13477888865
No 176
>PRK12377 putative replication protein; Provisional
Probab=99.03 E-value=7.8e-10 Score=108.72 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=64.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh--------HHHHHHHHhhcCCcEEEEecccccccCcc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD--------ADLKSLLLQTTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~--------~~l~~l~~~~~~~sII~IDEiD~l~~~~~ 292 (480)
..+++|+||||||||+||.|||+++ |..+..++..++... .....++.......+|+|||++.......
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 3589999999999999999999987 667777776654321 11234556667889999999986543332
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
....|.+.++.-.. ...-+|+|||..
T Consensus 181 ---~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 181 ---EQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred ---HHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 23344555544322 345578899954
No 177
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.02 E-value=1.7e-10 Score=101.32 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHH--HHh-------hcC---CcEEEEecccccccCccc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSL--LLQ-------TTS---KSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l--~~~-------~~~---~sII~IDEiD~l~~~~~~ 293 (480)
.+||.|+||+|||++|+++|..++..|..|.++.-...+++.-. +.. ... ..|+++|||... .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra-----p 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA-----P 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC-----C
Confidence 38999999999999999999999999999988643333333211 000 012 269999999965 4
Q ss_pred ccchhhhhhhcccccc------cccCCceEEEEecCCCc-----cCcccccCCCce
Q 011664 294 AVSLSGVLNFMDGVLN------SCCFEERVMVFTMNSKD-----HVDQALLRPGRI 338 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~------~~~~~~~ivI~tTN~~~-----~LD~aLlrpGRf 338 (480)
..+.+.||+.|..-.- ....+..+||+|-|..+ .|++|++. ||
T Consensus 76 pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4667888888852111 02234456777778665 57888887 77
No 178
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.01 E-value=4.9e-09 Score=113.79 Aligned_cols=202 Identities=15% Similarity=0.173 Sum_probs=125.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~ 261 (480)
...+|++++|....-+.+.+.+...... ...+||+|++||||+++|+++.... +.+|+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457999999998877777766554222 3359999999999999999997654 4689999998876
Q ss_pred ChHHHHHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccc-cccccc-----CCceEE
Q 011664 262 DDADLKSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG-VLNSCC-----FEERVM 318 (480)
Q Consensus 262 ~~~~l~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg-~~~~~~-----~~~~iv 318 (480)
.+.--..+|. +......|||||||.+.. .....|++.++. ...... ...+-|
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-----~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRi 342 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-----RMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 342 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-----HHHHHHHHHHhcCCcccCCCCcceeeeeEE
Confidence 4222223332 123457899999998843 223455555532 111000 112346
Q ss_pred EEecCCC-c------cCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHH
Q 011664 319 VFTMNSK-D------HVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 319 I~tTN~~-~------~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ 388 (480)
|+||+.+ . .+.+.|.. |+. ..|.+|+... ++...++..++.... .+......+++++-+..
T Consensus 343 I~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~-------~~~g~~~~~ls~~a~~~ 413 (520)
T PRK10820 343 ICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFA-------DEQGVPRPKLAADLNTV 413 (520)
T ss_pred EEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHH
Confidence 6666543 2 23455665 764 4555555543 234445555543210 01111124789998888
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhc
Q 011664 389 LMIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 389 ll~~a~~~~~~al~~~i~~~~~~ 411 (480)
|....+...++.|++++..+-..
T Consensus 414 L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 414 LTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHh
Confidence 88888999999999998876654
No 179
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.00 E-value=3.6e-09 Score=118.57 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=125.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD 263 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~ 263 (480)
.+|++++|.....+.+.+.+...... ...+||+|++|||||++|++|.... +.+++.++|..+..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57899999999999998888765332 3479999999999999999998854 578999999876432
Q ss_pred HHHHHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc-ccCCceEEEE
Q 011664 264 ADLKSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS-CCFEERVMVF 320 (480)
Q Consensus 264 ~~l~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~-~~~~~~ivI~ 320 (480)
.--..+|. .....++||||||+.+.. .....|+..++.-. +. .-..+.-+|+
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~-----~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 516 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL-----ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 516 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH-----HHHHHHHHHHHhCCEEeCCCCCcccceEEEEE
Confidence 11111111 223568999999998732 23355666554211 00 0012344677
Q ss_pred ecCCC-c------cCcccccCCCceeEEEEcCCCCHHHH----HHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHH
Q 011664 321 TMNSK-D------HVDQALLRPGRIDVHIHFPLCDFSSF----KTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGEL 389 (480)
Q Consensus 321 tTN~~-~------~LD~aLlrpGRfd~~I~~~~p~~~~r----~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~l 389 (480)
||+.. . .+.+.|.. |+. .+.+..|...+| ..|++.|+.... ........++|+.-+..+
T Consensus 517 ~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~-------~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 517 ATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIA-------RRMGRNIDSIPAETLRTL 586 (686)
T ss_pred eCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHH
Confidence 77643 2 12233333 443 334444444444 345555543211 011112247999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhc
Q 011664 390 MIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~~ 411 (480)
....+...++.|+++++.+-..
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999877654
No 180
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.00 E-value=3.8e-09 Score=114.34 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=126.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~ 261 (480)
..-+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.+|+.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999999888888877765332 3479999999999999999999764 5689999998875
Q ss_pred ChHHHHHHHH------------------hhcCCcEEEEecccccccCcccccchhhhhhhcccc-----ccc-ccCCceE
Q 011664 262 DDADLKSLLL------------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGV-----LNS-CCFEERV 317 (480)
Q Consensus 262 ~~~~l~~l~~------------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~-----~~~-~~~~~~i 317 (480)
...--..+|. +......||||||+.+.. .....|+..++.- .+. ...-++-
T Consensus 276 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvR 350 (526)
T TIGR02329 276 ESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL-----PLQTRLLRVLEEREVVRVGGTEPVPVDVR 350 (526)
T ss_pred hhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH-----HHHHHHHHHHhcCcEEecCCCceeeecce
Confidence 4221122332 113457899999998842 2335566555321 110 0001224
Q ss_pred EEEecCCC-cc------CcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHH
Q 011664 318 MVFTMNSK-DH------VDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIG 387 (480)
Q Consensus 318 vI~tTN~~-~~------LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~ 387 (480)
+|+|||.. .. +.+.|.. |+. ..|++|+... ++...|+..|+..... ....+++++.+.
T Consensus 351 iIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------~~~~~~~~~a~~ 418 (526)
T TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAA----------ALRLPDSEAAAQ 418 (526)
T ss_pred EEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHH----------HcCCCCCHHHHH
Confidence 66666643 21 2233443 553 5666666544 3455666676643211 112257777776
Q ss_pred H-------HHHHhhhcHHHHHHHHHHHHHhc
Q 011664 388 E-------LMIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 388 ~-------ll~~a~~~~~~al~~~i~~~~~~ 411 (480)
. +....+...++.|+++++.+...
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 6 77888999999999999887653
No 181
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=3e-09 Score=112.44 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=133.4
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR 259 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~ 259 (480)
+....+|++|+|....-..+++.+..+- +..-.||+.|.+||||..+|++|.+.. +-+|+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 3456789999999988888877665442 234579999999999999999999876 56899999988
Q ss_pred cCChHHHHHHHHh------------------hcCCcEEEEecccccccCcccccchhhhhhhcc-----ccccc-ccCCc
Q 011664 260 VADDADLKSLLLQ------------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-----GVLNS-CCFEE 315 (480)
Q Consensus 260 ~~~~~~l~~l~~~------------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-----g~~~~-~~~~~ 315 (480)
+-..--=..+|.. .....-||+|||..+. ....+.||..+. .+.+. .-.-.
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-----l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-----LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-----HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 7542111233311 1234789999999773 233466776664 12211 01123
Q ss_pred eEEEEecCCC-c------cCcccccCCCceeEEEEcCCCCHHHHH----HHHHHHhccCCCCCchhHHHHHHhCCCCCHH
Q 011664 316 RVMVFTMNSK-D------HVDQALLRPGRIDVHIHFPLCDFSSFK----TLASSYLGLKDHKLFPQVEEIFQNGSSLSPA 384 (480)
Q Consensus 316 ~ivI~tTN~~-~------~LD~aLlrpGRfd~~I~~~~p~~~~r~----~il~~~l~~~~~~l~~~i~~l~~~~~g~s~a 384 (480)
+-||+|||.. . .+-..|.- |+. ++.+..|...+|. .+...++......+. ....|++|.
T Consensus 382 VRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~-------~~v~~ls~~ 451 (560)
T COG3829 382 VRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYG-------RNVKGLSPD 451 (560)
T ss_pred EEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcC-------CCcccCCHH
Confidence 5589999953 2 22233333 553 5566666655543 344444432222221 234689999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHh
Q 011664 385 EIGELMIANRNSPSRALKSVITALQT 410 (480)
Q Consensus 385 dI~~ll~~a~~~~~~al~~~i~~~~~ 410 (480)
.+..++..+|...+|.|+++++.+-.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 182
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.99 E-value=5.1e-09 Score=113.44 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=127.1
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
++.+++|.....+.+.+.+..... ....|||+|++||||+++|++|.... +.+|+.++|..+..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 578899999999988888776532 24479999999999999999999875 5689999999875421
Q ss_pred HHHHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc-ccCCceEEEEe
Q 011664 265 DLKSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS-CCFEERVMVFT 321 (480)
Q Consensus 265 ~l~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~-~~~~~~ivI~t 321 (480)
--..+|. .......|||||||.+.. .....|+..++.-. +. ....+.-||+|
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~-----~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL-----ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH-----HHHHHHHHHHhcCCEeeCCCCcceecceEEEEe
Confidence 1122332 123457899999998842 23345565553211 10 00113346776
Q ss_pred cCCC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 322 MNSK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 322 TN~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
||.. ..+.+.|.. |+. ..|++|+... ++...|++.++.... ..+.....++++.-+..|..
T Consensus 329 t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~-------~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 329 TNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNR-------ARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred cCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHH-------HHcCCCCCCCCHHHHHHHHh
Confidence 6643 224444544 554 3455554433 233345555543211 11111235899999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhc
Q 011664 392 ANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 392 ~a~~~~~~al~~~i~~~~~~ 411 (480)
..+...++.|+++++.+...
T Consensus 400 y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALL 419 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 183
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.99 E-value=2.1e-09 Score=119.16 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=100.5
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------------------
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM------------------- 248 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l------------------- 248 (480)
.|.+|+|++.+|..+.-....+ ...||||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4889999999887765333211 12479999999999999999999887
Q ss_pred ----------------CCcEEEEeCCC----cCChHHHHHHHHh-----------hcCCcEEEEecccccccCcccccch
Q 011664 249 ----------------SYDVYDVDLSR----VADDADLKSLLLQ-----------TTSKSVILIEDLDRFLVEKPAAVSL 297 (480)
Q Consensus 249 ----------------~~~~~~i~~s~----~~~~~~l~~l~~~-----------~~~~sII~IDEiD~l~~~~~~~~~l 297 (480)
..+|+.+.++. +.+..++...+.. .....|||||||+.+. ...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-----~~~q 143 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-----DHLV 143 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC-----HHHH
Confidence 24566655442 2232233332211 1244799999999883 3445
Q ss_pred hhhhhhcc-ccc---c----cccCCceEEEEecCCC-ccCcccccCCCceeEEEEcCCCC-HHHHHHHHHHHh
Q 011664 298 SGVLNFMD-GVL---N----SCCFEERVMVFTMNSK-DHVDQALLRPGRIDVHIHFPLCD-FSSFKTLASSYL 360 (480)
Q Consensus 298 s~lL~~ld-g~~---~----~~~~~~~ivI~tTN~~-~~LD~aLlrpGRfd~~I~~~~p~-~~~r~~il~~~l 360 (480)
+.|++.|+ |.. . .......++|+|+|.. ..+.++|+. ||+.+|.++++. .+++.+++...+
T Consensus 144 ~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 144 DVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 66777774 210 0 0111235677788843 368899999 999999999886 466777776543
No 184
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.3e-09 Score=104.52 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=79.4
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhh-hCC-CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHR-LGR-VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------ 262 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~-~g~-~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------ 262 (480)
-++|++..|+.+.=++....++-..... -.. -.+.++||.||.|||||.||+.+|..++.+|-.-|++.+..
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 3688888888776554433222111100 001 12457999999999999999999999999999999887653
Q ss_pred --hHHHHHHHHhh------cCCcEEEEecccccccCccc---------ccchhhhhhhcccccc
Q 011664 263 --DADLKSLLLQT------TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLN 309 (480)
Q Consensus 263 --~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~ 309 (480)
+.-+.+++..+ ..+.||+|||||.+.....+ ......||..++|-..
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTva 205 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVA 205 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCcee
Confidence 22355666443 47899999999999753321 1223457887776543
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.98 E-value=1.2e-09 Score=110.72 Aligned_cols=128 Identities=21% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~ 262 (480)
..+|+++...+.-+..+.+....|+.. |.. + +..+|++|+||||||||+|+.|+|+++ |..+..+.++.+..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 367888776654455555555555543 221 1 245799999999999999999999987 77777777655432
Q ss_pred -------hHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhc-ccccccccCCceEEEEecCCC
Q 011664 263 -------DADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFM-DGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 263 -------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~l-dg~~~~~~~~~~ivI~tTN~~ 325 (480)
+..+...+.......+|+|||+....... -...+++..+ +.-. .++.-+|+|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~---~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSS---WVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccH---HHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 12244556666788999999998653211 1112344332 2211 2456689999954
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.96 E-value=6.3e-09 Score=112.69 Aligned_cols=199 Identities=13% Similarity=0.170 Sum_probs=119.4
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHc-----------CCCcEEEE
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASF-----------MSYDVYDV 255 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~-----------l~~~~~~i 255 (480)
.+|++++|.....+.+++.+..+... ...+||+|++||||+++|++|.+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46999999999888888877665332 347999999999999999999887 35689999
Q ss_pred eCCCcCChHHHHHHHH------------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cccc----
Q 011664 256 DLSRVADDADLKSLLL------------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NSCC---- 312 (480)
Q Consensus 256 ~~s~~~~~~~l~~l~~------------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~~~---- 312 (480)
||+.+..+.--..+|. +......||||||+.+.. .....|+..++.-. ....
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL-----PLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH-----HHHHHHHhhhhcCeEEecCCCce
Confidence 9998764221222332 123457899999998842 23355666664211 0000
Q ss_pred -CCceEEEEecCCC-cc------CcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccC----CCCCchhHHHHHHh
Q 011664 313 -FEERVMVFTMNSK-DH------VDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLK----DHKLFPQVEEIFQN 377 (480)
Q Consensus 313 -~~~~ivI~tTN~~-~~------LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~----~~~l~~~i~~l~~~ 377 (480)
.-++-+|+|||.. +. +.+.|.- |+. ..|++|+... ++...|+..|+... +..+..+.
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a------ 431 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL------ 431 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH------
Confidence 1123467776643 21 2223333 443 3444554432 23445666665431 11111111
Q ss_pred CCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 011664 378 GSSLSPAEIGELMIANRNSPSRALKSVITALQT 410 (480)
Q Consensus 378 ~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~~ 410 (480)
.++.++-+..++...+...++.|+++++.+..
T Consensus 432 -~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 432 -RQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred -HHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 12222333566677889999999999987665
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=98.95 E-value=8.3e-09 Score=116.22 Aligned_cols=128 Identities=11% Similarity=0.105 Sum_probs=99.9
Q ss_pred EEEEc--cCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcCChHHHHHHHHhh---c-----CCcEEEEecccccccCc
Q 011664 227 YLLYG--PSGTGKSSFAAAMASFM-----SYDVYDVDLSRVADDADLKSLLLQT---T-----SKSVILIEDLDRFLVEK 291 (480)
Q Consensus 227 iLL~G--PpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~~~~~l~~l~~~~---~-----~~sII~IDEiD~l~~~~ 291 (480)
.+..| |++.||||+|+|+|+++ +.+++.+|+++..+-..++..+... . +..|++|||+|.+.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 35568 99999999999999998 5689999999877777777765332 1 23699999999983
Q ss_pred ccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 011664 292 PAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKL 367 (480)
Q Consensus 292 ~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l 367 (480)
....+.|+..|+.. .....+|++||.+..+.+++++ |+ ..+.|++|+.++....+...+...+..+
T Consensus 644 --~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 644 --QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred --HHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 23456788877643 3457789999999999999999 98 5899999999888887777765544443
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.94 E-value=2.7e-09 Score=101.88 Aligned_cols=185 Identities=14% Similarity=0.207 Sum_probs=113.0
Q ss_pred eCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-C----CcEEE
Q 011664 180 SVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-S----YDVYD 254 (480)
Q Consensus 180 ~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~----~~~~~ 254 (480)
+|..-+|+.+.||+|.++..+.+.-. .+-|--| .+++.||||||||+-+.++|+++ | .-+..
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~vi-----------a~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVI-----------AKEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHH-----------HHcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 35667889999999999988776531 2223222 69999999999999999999986 4 24677
Q ss_pred EeCCCcCChHHHH---HHHHhhc------CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 255 VDLSRVADDADLK---SLLLQTT------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 255 i~~s~~~~~~~l~---~l~~~~~------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
++.|+-.+-.-++ +.|++.. ...||++||.|++... .+ ..|-..|+-. + +..-+.+++|..
T Consensus 84 LNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--AQ---QAlRRtMEiy-S----~ttRFalaCN~s 153 (333)
T KOG0991|consen 84 LNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--AQ---QALRRTMEIY-S----NTTRFALACNQS 153 (333)
T ss_pred ccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--HH---HHHHHHHHHH-c----ccchhhhhhcch
Confidence 8888766654444 4565542 2379999999988421 12 2233333322 2 234477788988
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHH
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSV 404 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~ 404 (480)
+.+-+.+-+ |+- .+.+.-.+.++...-+....+ .+...|++.-++.++..+..+...++..+
T Consensus 154 ~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k--------------~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 154 EKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK--------------AEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred hhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH--------------HhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 887666666 553 333333343332221211111 12346777777777666655555555444
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.93 E-value=1.4e-08 Score=93.70 Aligned_cols=112 Identities=19% Similarity=0.292 Sum_probs=79.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC-----------------------CCcEEEEeCCCc---CChHHHHHHHHhh---
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM-----------------------SYDVYDVDLSRV---ADDADLKSLLLQT--- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l-----------------------~~~~~~i~~s~~---~~~~~l~~l~~~~--- 273 (480)
.+..+||+||+|+||+++|.++|+.+ ..+++.++...- .+-.+++.+....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 45689999999999999999999854 235667765543 3456677665433
Q ss_pred ---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCC
Q 011664 274 ---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 274 ---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p 347 (480)
....|++|||+|.+. ....+.||..|+.- +...++|++|+.++.|-|.+++ |+ ..+.|+..
T Consensus 98 ~~~~~~KviiI~~ad~l~-----~~a~NaLLK~LEep-----p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT-----EEAQNALLKTLEEP-----PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp -TTSSSEEEEEETGGGS------HHHHHHHHHHHHST-----TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred HhcCCceEEEeehHhhhh-----HHHHHHHHHHhcCC-----CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 245799999999883 34568888888643 4578899999999999999999 98 47777654
No 190
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.93 E-value=1.2e-08 Score=104.01 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=46.5
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC--CcEEEEeCCCcC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--YDVYDVDLSRVA 261 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--~~~~~i~~s~~~ 261 (480)
..+.++|+.++++..--.+. .++. |+--.+++||.||||||||.||-+||++|| .||..++.|++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~-mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVD-MIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHH-HHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHH-HHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 35789999999998764333 3333 223467999999999999999999999997 678888777654
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.92 E-value=6.5e-10 Score=104.10 Aligned_cols=94 Identities=24% Similarity=0.406 Sum_probs=59.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC-------hHHHHHHHHhhcCCcEEEEecccccccCccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD-------DADLKSLLLQTTSKSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~-------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~ 293 (480)
..|++|+||||||||+||.|+|+++ |..+..++.+++.. +....+.+.+.....+|+|||+.....+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~-- 124 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSE-- 124 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---H--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecc--
Confidence 4689999999999999999999865 78888888765432 22244556666788999999997543222
Q ss_pred ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 294 AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
.....|.+.++.-.. ..-+|+|||..
T Consensus 125 -~~~~~l~~ii~~R~~-----~~~tIiTSN~~ 150 (178)
T PF01695_consen 125 -WEAELLFEIIDERYE-----RKPTIITSNLS 150 (178)
T ss_dssp -HHHHCTHHHHHHHHH-----T-EEEEEESS-
T ss_pred -cccccchhhhhHhhc-----ccCeEeeCCCc
Confidence 223445555554332 23467799954
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.92 E-value=3.2e-09 Score=108.50 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=74.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh---------HHHHHHHHhhcCCcEEEEecccccccCcc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD---------ADLKSLLLQTTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~---------~~l~~l~~~~~~~sII~IDEiD~l~~~~~ 292 (480)
.+++||||||||||+|+.|||+++ |..+++++..++... ......+.......+|+|||+......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t-- 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKIT-- 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCC--
Confidence 689999999999999999999986 778888887654321 111222444557789999999876432
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCC-Ccc----CcccccCCCcee---EEEEcCCCC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS-KDH----VDQALLRPGRID---VHIHFPLCD 348 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~-~~~----LD~aLlrpGRfd---~~I~~~~p~ 348 (480)
....+.|++.++.... .+.-+|+|||. |+. +++++.+ |+- ..|.|.-.|
T Consensus 262 -~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d 318 (329)
T PRK06835 262 -EFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGED 318 (329)
T ss_pred -HHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcC
Confidence 2334556666654433 23457788884 333 3566666 653 345554444
No 193
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=3.8e-09 Score=105.41 Aligned_cols=135 Identities=27% Similarity=0.373 Sum_probs=84.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCCCcCChHHHHHHHHhh-------------cCCcEEEEeccccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLSRVADDADLKSLLLQT-------------TSKSVILIEDLDRF 287 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s~~~~~~~l~~l~~~~-------------~~~sII~IDEiD~l 287 (480)
.+.+||+||+|||||++++..-..+.-. ...++++.......++..+... ..+.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4689999999999999999877766432 3456676655555555544221 13479999999987
Q ss_pred ccCcccccchhhhhhhc---ccccccc-----cCCceEEEEecCCC---ccCcccccCCCceeEEEEcCCCCHHHHHHHH
Q 011664 288 LVEKPAAVSLSGVLNFM---DGVLNSC-----CFEERVMVFTMNSK---DHVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356 (480)
Q Consensus 288 ~~~~~~~~~ls~lL~~l---dg~~~~~-----~~~~~ivI~tTN~~---~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il 356 (480)
..+..+.....+||.++ .|..+.. .-.+..+|+|+|.+ ..+++.++| .| ..+.++.|+.+....|+
T Consensus 113 ~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If 189 (272)
T PF12775_consen 113 QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIF 189 (272)
T ss_dssp ---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHH
Confidence 77666666566777665 2433310 11345577777743 248889998 77 58999999999888887
Q ss_pred HHHhc
Q 011664 357 SSYLG 361 (480)
Q Consensus 357 ~~~l~ 361 (480)
..++.
T Consensus 190 ~~il~ 194 (272)
T PF12775_consen 190 SSILQ 194 (272)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 194
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=6.6e-09 Score=112.50 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=95.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCC--CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEE----eCCCcCC--
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRV--WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV----DLSRVAD-- 262 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~--~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i----~~s~~~~-- 262 (480)
.|.|++.+|..+.-.+. .+......-|.. -.-.+||+|+||||||++|+++++......+.. ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~---gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 204 SIYGHEDIKKAILLLLF---GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred cccCcHHHHHHHHHHHh---CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 47888888877653331 111000000111 122699999999999999999999775443332 1111211
Q ss_pred -------hHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccc---------ccccccCCceEEEEecCCCc
Q 011664 263 -------DADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG---------VLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 -------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~~ivI~tTN~~~ 326 (480)
+..++.-........+++|||+|.+- ....+.|+..|+. ... .-.....||+|+|..+
T Consensus 281 ~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~-----~~~q~~L~e~me~~~i~i~k~G~~~-~l~~~~~viAa~NP~~ 354 (509)
T smart00350 281 TRDPETREFTLEGGALVLADNGVCCIDEFDKMD-----DSDRTAIHEAMEQQTISIAKAGITT-TLNARCSVLAAANPIG 354 (509)
T ss_pred eEccCcceEEecCccEEecCCCEEEEechhhCC-----HHHHHHHHHHHhcCEEEEEeCCEEE-EecCCcEEEEEeCCCC
Confidence 00000000112356899999999873 2334556666632 111 1123345778888542
Q ss_pred -------------cCcccccCCCceeEE-EEcCCCCHHHHHHHHHHHhc
Q 011664 327 -------------HVDQALLRPGRIDVH-IHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 327 -------------~LD~aLlrpGRfd~~-I~~~~p~~~~r~~il~~~l~ 361 (480)
.|++++++ |||.. +-..+|+.+...+|++..+.
T Consensus 355 g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred cccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 58999999 99965 55578999999999988764
No 195
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.90 E-value=4.9e-09 Score=99.63 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=36.0
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.|++|.|++.+|..+.-... | ..++|++||||||||++|++++.-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999998874332 3 3589999999999999999999865
No 196
>PRK06526 transposase; Provisional
Probab=98.88 E-value=1.1e-09 Score=108.05 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=60.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh-------HHHHHHHHhhcCCcEEEEecccccccCccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~ 293 (480)
+.+++|+||||||||+|+.+++.++ |..++.++++++... ..+...+.+...+.+|+|||++.+..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence 4589999999999999999999865 666666655443321 122334445567899999999977543333
Q ss_pred ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 294 AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
...+.++++ .... . .-+|+|||.+
T Consensus 178 ~~~L~~li~---~r~~----~-~s~IitSn~~ 201 (254)
T PRK06526 178 ANLFFQLVS---SRYE----R-ASLIVTSNKP 201 (254)
T ss_pred HHHHHHHHH---HHHh----c-CCEEEEcCCC
Confidence 333334443 3222 1 2377888865
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=6.7e-08 Score=97.46 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=49.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC--CcEEEEeCCCcCC
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--YDVYDVDLSRVAD 262 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--~~~~~i~~s~~~~ 262 (480)
=+-++|+.++++..-- +...++. |.-..+|+|+.||||||||.||-+||++|| .||..++.|++.+
T Consensus 38 ~dG~VGQ~~AReAaGv-Iv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 38 GDGLVGQEEAREAAGV-IVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred CCcccchHHHHHhhhH-HHHHHHh-------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 4678999998887432 2222222 444578999999999999999999999997 5777777776543
No 198
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=1.6e-08 Score=93.89 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=66.3
Q ss_pred cccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHHH
Q 011664 192 ISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLKS 268 (480)
Q Consensus 192 i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~~ 268 (480)
|+|....-+++.+.+..... .+..|||+|++||||+.+|++|.+.. +.+|+.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 45666666666666655433 34579999999999999999999976 46899999998865443445
Q ss_pred HHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhcc
Q 011664 269 LLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD 305 (480)
Q Consensus 269 l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld 305 (480)
+|.. .....+||||||+.+.. .....|++.|+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~-----~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP-----ELQAKLLRVLE 118 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H-----HHHHHHHHHHH
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHH-----HHHHHHHHHHh
Confidence 5532 13568999999999842 33456666665
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-08 Score=103.67 Aligned_cols=129 Identities=20% Similarity=0.365 Sum_probs=89.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe-CCCcCC--h----HHHHHHHHhh--cCCcEEEEeccccccc-----
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD-LSRVAD--D----ADLKSLLLQT--TSKSVILIEDLDRFLV----- 289 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~-~s~~~~--~----~~l~~l~~~~--~~~sII~IDEiD~l~~----- 289 (480)
-.++||+||||+|||.||..+|...+++|+.+= ..++.+ + ..+.+.|..+ ..-+||++|||+.+..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 357999999999999999999999999999763 333433 2 2366777544 3459999999998864
Q ss_pred CcccccchhhhhhhcccccccccCCceEEEE-ecCCCccCc-ccccCCCceeEEEEcCCCCH-HHHHHHHH
Q 011664 290 EKPAAVSLSGVLNFMDGVLNSCCFEERVMVF-TMNSKDHVD-QALLRPGRIDVHIHFPLCDF-SSFKTLAS 357 (480)
Q Consensus 290 ~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~-tTN~~~~LD-~aLlrpGRfd~~I~~~~p~~-~~r~~il~ 357 (480)
.|-++..+..|+..+..... .+.+++|+ ||...+-|. -.++. .|+..|++|..+. ++...++.
T Consensus 618 PRfSN~vlQaL~VllK~~pp---kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 618 PRFSNLVLQALLVLLKKQPP---KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred chhhHHHHHHHHHHhccCCC---CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 34455556666666655443 34456555 555555442 35566 8899999998776 45555544
No 200
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.5e-08 Score=102.33 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=92.3
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCC-------------------------cEEEEeCC------------------
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------------------DVYDVDLS------------------ 258 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------------------~~~~i~~s------------------ 258 (480)
..+.++||+||+|+||+++|.++|+.+.+ +++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45679999999999999999999986633 13333211
Q ss_pred -----------CcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEe
Q 011664 259 -----------RVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT 321 (480)
Q Consensus 259 -----------~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t 321 (480)
...+-.+++.+.... ....|++||++|.+. ....+.||..++.- +++.++|++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----~~AaNaLLKtLEEP-----p~~t~fiL~ 168 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----VAAANALLKTLEEP-----PPGTVFLLV 168 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----HHHHHHHHHHhcCC-----CcCcEEEEE
Confidence 112234566655432 234699999999883 34457888888742 567889999
Q ss_pred cCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 011664 322 MNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSY 359 (480)
Q Consensus 322 TN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~ 359 (480)
|++++.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 169 t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 169 SARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999 99 59999999999888777653
No 201
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=1.5e-08 Score=105.24 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=130.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHc----CCCcEEEEeCCCc
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASF----MSYDVYDVDLSRV 260 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~----l~~~~~~i~~s~~ 260 (480)
....+++++|....-+++++.+..+ .. ....+|++|++||||+.+|++|... .+.+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-------ap----~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-------AP----SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-------CC----CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3456899999999988888888762 22 2346999999999999999999853 3668999999998
Q ss_pred CChHHHHHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhccc-----cccc-ccCCceE
Q 011664 261 ADDADLKSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG-----VLNS-CCFEERV 317 (480)
Q Consensus 261 ~~~~~l~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg-----~~~~-~~~~~~i 317 (480)
..+-...++|.- .....+||+|||..+-+. ....|+..||. +.+. .-...+-
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~-----~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE-----GQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHh-----HHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 877666566631 124589999999988432 22446666653 1110 1123456
Q ss_pred EEEecC-CC-ccCcc--cccCCCceeEEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 318 MVFTMN-SK-DHVDQ--ALLRPGRIDVHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 318 vI~tTN-~~-~~LD~--aLlrpGRfd~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
+|+||| .+ +.+-. .|.+ -|....|.+|+... +++..++..++......+. ......+|.-+..++.
T Consensus 217 li~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~-------~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLG-------LPLSVDSPEALRALLA 288 (403)
T ss_pred eeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHHHHh
Confidence 777776 22 22322 3433 15556667666544 3344556665543211111 1112344566777777
Q ss_pred HhhhcHHHHHHHHHHHHHhcC
Q 011664 392 ANRNSPSRALKSVITALQTDG 412 (480)
Q Consensus 392 ~a~~~~~~al~~~i~~~~~~~ 412 (480)
..+.+.++.|+++++.+....
T Consensus 289 y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 289 YDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 788889999999998887664
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.84 E-value=2e-08 Score=99.20 Aligned_cols=124 Identities=16% Similarity=0.308 Sum_probs=77.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~ 262 (480)
...+.++-+.+...+.....+..+.. +|. -..+++||||||||||+||.|||+++ |..++.+...++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 34455666666555555544444432 222 35689999999999999999999987 67888888776653
Q ss_pred h-------HHHH-HHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 263 D-------ADLK-SLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 263 ~-------~~l~-~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+ .... ++........+|+|||+...-...... +.+++.++.... .... ++|||.+
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~---~~~~q~I~~r~~----~~~~-~~tsN~~ 209 (254)
T COG1484 147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEA---DLLFQLISRRYE----SRSL-IITSNLS 209 (254)
T ss_pred HHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHHHH---HHHHHHHHHHHh----hccc-eeecCCC
Confidence 1 1122 222336678999999999763322222 334444443332 2233 8899965
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1e-07 Score=97.09 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=88.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC---------------------cEEEEe--CCC-------cCChHHHHHHHHh
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY---------------------DVYDVD--LSR-------VADDADLKSLLLQ 272 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~---------------------~~~~i~--~s~-------~~~~~~l~~l~~~ 272 (480)
.+.++||+||+|+||+++|.++|+.+-+ +++.+. .++ -..-..++.+...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4568999999999999999999975521 344442 111 1123345555432
Q ss_pred h------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCC
Q 011664 273 T------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 273 ~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
. ....|++||++|.+. ....+.||..|+.- +.+.+||++|+.++.|-|.+++ |+. .+.|+.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~-----~~AaNaLLKtLEEP-----p~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~ 171 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN-----RAACNALLKTLEEP-----SPGRYLWLISAQPARLPATIRS--RCQ-RLEFKL 171 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC-----HHHHHHHHHHhhCC-----CCCCeEEEEECChhhCchHHHh--hhe-EeeCCC
Confidence 2 134799999999883 34457788887542 4567888899999999999999 995 889999
Q ss_pred CCHHHHHHHHHH
Q 011664 347 CDFSSFKTLASS 358 (480)
Q Consensus 347 p~~~~r~~il~~ 358 (480)
|+.++-.+.+..
T Consensus 172 ~~~~~~~~~L~~ 183 (319)
T PRK08769 172 PPAHEALAWLLA 183 (319)
T ss_pred cCHHHHHHHHHH
Confidence 999877666653
No 204
>PRK06921 hypothetical protein; Provisional
Probab=98.83 E-value=9e-09 Score=102.42 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=64.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCCcCCh-----HHHHHHHHhhcCCcEEEEecccc-cccC-cc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSRVADD-----ADLKSLLLQTTSKSVILIEDLDR-FLVE-KP 292 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~~~~~-----~~l~~l~~~~~~~sII~IDEiD~-l~~~-~~ 292 (480)
..+++|+||||||||+|+.|||+++ |..+++++..++... ......+.......+|+|||++. +.+. ..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 4689999999999999999999976 567778776543221 11222334456789999999954 1111 11
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCC-CccC---cccccC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS-KDHV---DQALLR 334 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~-~~~L---D~aLlr 334 (480)
+.-....|...++.... .+.-+|+|||. |+.+ ++++.+
T Consensus 197 t~~~~~~lf~iin~R~~----~~k~tIitsn~~~~el~~~~~~l~s 238 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYL----NHKPILISSELTIDELLDIDEALGS 238 (266)
T ss_pred CHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHhhhhhHHHH
Confidence 12223445555554332 22346778884 4443 345544
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.82 E-value=4.6e-08 Score=104.72 Aligned_cols=199 Identities=15% Similarity=0.174 Sum_probs=125.5
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
.+.+++|.....+.+.+.+.... .....+|+.|++|||||++|+++.... +.+|+.++|+.+..+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 35678887776666665554321 124469999999999999999999876 4689999998874432
Q ss_pred HHHHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhccccc-cccc-----CCceEEEEe
Q 011664 265 DLKSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NSCC-----FEERVMVFT 321 (480)
Q Consensus 265 ~l~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~~~-----~~~~ivI~t 321 (480)
--..+|.. ...+..|||||||.+.. .....|+..++.-. .... ..+.-+|+|
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-----~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 279 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-----DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAA 279 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-----HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEe
Confidence 22233321 22457899999998843 22345565554211 0000 112346666
Q ss_pred cCCC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 322 MNSK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 322 TN~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
|+.. ..+.+.|.. |+. ..|.+|+... ++...|+..|+.... ........++|+.-+..++.
T Consensus 280 ~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 280 THQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAA-------RELGVEAKLLHPETEAALTR 350 (469)
T ss_pred CCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHHHh
Confidence 6532 235566666 773 5666665543 345556666653211 11111234799999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhc
Q 011664 392 ANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 392 ~a~~~~~~al~~~i~~~~~~ 411 (480)
..+...++.|+++++.+-..
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.1e-08 Score=109.87 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=105.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEe
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVD 256 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~ 256 (480)
-.+|.++|-++-.+.+.+.+.+. .+.+-+|.|+||+|||.++..+|... +..++.+|
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 35888999998888887766532 45578899999999999999999754 56789999
Q ss_pred CCCcCC--------hHHHHHHHHhh--cCCcEEEEecccccccCcccc---cchhhhhhhcccccccccCCceEEEEecC
Q 011664 257 LSRVAD--------DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA---VSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 257 ~s~~~~--------~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~---~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
++.+.. +..++.++... ..+.|||||||+.+.+..... ...+.+|.-+ .. .++-++|-+||-
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa---LA--RGeL~~IGATT~ 308 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA---LA--RGELRCIGATTL 308 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH---Hh--cCCeEEEEeccH
Confidence 876543 44566666433 348999999999998754431 2233344332 22 133344444542
Q ss_pred CC----ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 011664 324 SK----DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSY 359 (480)
Q Consensus 324 ~~----~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~ 359 (480)
.- =.=|+||-| ||. .|.+..|+.++-..|++-.
T Consensus 309 ~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHH
Confidence 11 123999999 996 8999999999888777654
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=7.5e-08 Score=98.82 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=91.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC------------------------cEEEEeCC---CcCChHHHHHHHHhh--
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY------------------------DVYDVDLS---RVADDADLKSLLLQT-- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~------------------------~~~~i~~s---~~~~~~~l~~l~~~~-- 273 (480)
.+.++||+||+|+||+++|.++|..+-+ +++.+... ...+-.+++.+....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 4568999999999999999999986521 34455332 123445566655432
Q ss_pred ----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCH
Q 011664 274 ----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 274 ----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
....|++||++|.+- ....+.||..|+. .+++.++|++|+.++.|-|.+++ |+. .+.|+.|+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~-----~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~ 169 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT-----DAAANALLKTLEE-----PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPE 169 (334)
T ss_pred ccccCCceEEEEcchHhhC-----HHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCH
Confidence 245799999999883 3445788888864 25678899999999999999999 996 789999998
Q ss_pred HHHHHHHHH
Q 011664 350 SSFKTLASS 358 (480)
Q Consensus 350 ~~r~~il~~ 358 (480)
++-...+..
T Consensus 170 ~~~~~~L~~ 178 (334)
T PRK07993 170 QYALTWLSR 178 (334)
T ss_pred HHHHHHHHH
Confidence 887766643
No 208
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.2e-07 Score=94.89 Aligned_cols=124 Identities=10% Similarity=0.130 Sum_probs=92.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC------------------------cEEEEeC--CCcCChHHHHHHHHhh---
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY------------------------DVYDVDL--SRVADDADLKSLLLQT--- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~------------------------~~~~i~~--s~~~~~~~l~~l~~~~--- 273 (480)
.+.++||+||+|+||+++|.++|+.+-+ +++.+.. +.-.+-.++|.+....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4568999999999999999999986522 3444533 1223455666654332
Q ss_pred ---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHH
Q 011664 274 ---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFS 350 (480)
Q Consensus 274 ---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~ 350 (480)
....|++||++|.+. ....+.||..++.- +...++|++|+.++.|-|.+++ |+. .+.|++|+.+
T Consensus 103 ~~~g~~KV~iI~~a~~m~-----~~AaNaLLKtLEEP-----p~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~ 169 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT-----EAAANALLKTLEEP-----RPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQ 169 (325)
T ss_pred cccCCceEEEEechhhhC-----HHHHHHHHHHhcCC-----CCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHH
Confidence 244799999999883 34557888888642 5677888999999999999999 984 8899999998
Q ss_pred HHHHHHHHH
Q 011664 351 SFKTLASSY 359 (480)
Q Consensus 351 ~r~~il~~~ 359 (480)
+..+.+...
T Consensus 170 ~~~~~L~~~ 178 (325)
T PRK06871 170 QALDWLQAQ 178 (325)
T ss_pred HHHHHHHHH
Confidence 877766654
No 209
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-07 Score=94.99 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=54.1
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
-|+|++++|+.+.-++..-.++.+.-..+. --.|+++|..||.|+|||.+|+-+|...+.||+.+..+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 378999999998877765544443333332 2357899999999999999999999999999999865443
No 210
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.73 E-value=3.9e-08 Score=108.10 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=87.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCCC----cCChHHHHHHHH-----------hhcCCcEEEEeccccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLSR----VADDADLKSLLL-----------QTTSKSVILIEDLDRF 287 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s~----~~~~~~l~~l~~-----------~~~~~sII~IDEiD~l 287 (480)
.++||.|+||||||++|++++..+.. +|..++++. +.+.-.+...+. ......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 48999999999999999999998754 577777521 222222222111 1124479999999987
Q ss_pred ccCcccccchhhhhhhcc-cc--------cccccCCceEEEEecCCCc---cCcccccCCCceeEEEEcCCC-CHHHHHH
Q 011664 288 LVEKPAAVSLSGVLNFMD-GV--------LNSCCFEERVMVFTMNSKD---HVDQALLRPGRIDVHIHFPLC-DFSSFKT 354 (480)
Q Consensus 288 ~~~~~~~~~ls~lL~~ld-g~--------~~~~~~~~~ivI~tTN~~~---~LD~aLlrpGRfd~~I~~~~p-~~~~r~~ 354 (480)
. ....+.|++.|+ |. .. .......+|+|+|..+ .|.++|+. ||+.+|.+.++ +.++|.+
T Consensus 97 ~-----~~~q~~Ll~al~~g~v~i~r~G~~~-~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 97 D-----DGLSNRLLQALDEGVVIVEREGISV-VHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVE 168 (589)
T ss_pred C-----HHHHHHHHHHHHcCCeEEEECCCce-eecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHH
Confidence 3 345577777775 21 11 1123456777888665 68999999 99998888754 5667889
Q ss_pred HHHHHh
Q 011664 355 LASSYL 360 (480)
Q Consensus 355 il~~~l 360 (480)
|++..+
T Consensus 169 il~~~~ 174 (589)
T TIGR02031 169 IVRRER 174 (589)
T ss_pred HHHHHH
Confidence 888876
No 211
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.73 E-value=9.1e-08 Score=101.66 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=118.6
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
.+..++|.....+.+.+.+.... .....++++|++||||+++|+++.... +.+|+.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 34567777666666665443321 123469999999999999999998765 46899999998754 2
Q ss_pred HHHH-HHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhccccc-cccc-----CCceEEEE
Q 011664 265 DLKS-LLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NSCC-----FEERVMVF 320 (480)
Q Consensus 265 ~l~~-l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~~~-----~~~~ivI~ 320 (480)
.+.. +|.. ...+.+|||||||.+.. .....|+..++.-. .... ..+.-+|+
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~ 279 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----NLQAKLLRFLQERVIERLGGREEIPVDVRIVC 279 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----HHHHHHHHHHhhCeEEeCCCCceeeeceEEEE
Confidence 3322 2321 13467999999998842 22345555553211 0000 11334666
Q ss_pred ecCCC-------ccCcccccCCCceeEEEEcCCCCHHHHH----HHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHH
Q 011664 321 TMNSK-------DHVDQALLRPGRIDVHIHFPLCDFSSFK----TLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGEL 389 (480)
Q Consensus 321 tTN~~-------~~LD~aLlrpGRfd~~I~~~~p~~~~r~----~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~l 389 (480)
||+.. ..+.+.|.. |+. .+.+..|...+|. .++..++.... ........++|+.-+..+
T Consensus 280 ~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 280 ATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFA-------RELKRKTKGFTDDALRAL 349 (445)
T ss_pred ecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHH-------HHhCCCCCCCCHHHHHHH
Confidence 66543 233444544 553 3444444444443 35555543210 011112357999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhc
Q 011664 390 MIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~~ 411 (480)
....+...++.|+.+++.+-..
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999877654
No 212
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.72 E-value=8.9e-08 Score=101.16 Aligned_cols=201 Identities=16% Similarity=0.177 Sum_probs=133.4
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD 263 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~ 263 (480)
..+..++|....-+++.+.+...... .-.||++|++||||-.+|++|.... +.+|+.+||..+..+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35678899999888888777655322 3469999999999999999999876 459999999988654
Q ss_pred HHHHHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhcc-----ccccc-ccCCceEEEE
Q 011664 264 ADLKSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-----GVLNS-CCFEERVMVF 320 (480)
Q Consensus 264 ~~l~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-----g~~~~-~~~~~~ivI~ 320 (480)
--=..+|.. ......||+|||..+.. .....||..+. .+.+. .-.-.+-||+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl-----~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIa 281 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL-----ELQVKLLRVLQEREFERVGGNKPIKVDVRIIA 281 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH-----HHHHHHHHHHHcCeeEecCCCcccceeeEEEe
Confidence 333345531 13468999999998732 23355665553 22110 0011344788
Q ss_pred ecCCC-------ccCcccccCCCceeEEEEcCCCCHHHHHH----HHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHH
Q 011664 321 TMNSK-------DHVDQALLRPGRIDVHIHFPLCDFSSFKT----LASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGEL 389 (480)
Q Consensus 321 tTN~~-------~~LD~aLlrpGRfd~~I~~~~p~~~~r~~----il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~l 389 (480)
|||.. ..+-+.|.- |+ .++.+..|...+|.+ |+..++.... .+.-....++|+..++.+
T Consensus 282 aT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~-------~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 282 ATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFA-------AELGRPPKGFSPEALAAL 351 (464)
T ss_pred ecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHH-------HHcCCCCCCCCHHHHHHH
Confidence 88843 122334444 55 366666666655543 5555543211 111123468999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhcCC
Q 011664 390 MIANRNSPSRALKSVITALQTDGE 413 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~~~~ 413 (480)
+...|...+|.|+++++....-.+
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999998876644
No 213
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.5e-08 Score=102.57 Aligned_cols=123 Identities=20% Similarity=0.354 Sum_probs=85.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--------hHHHHHHHHhh------cCCcEEEEeccccccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD--------DADLKSLLLQT------TSKSVILIEDLDRFLV 289 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~--------~~~l~~l~~~~------~~~sII~IDEiD~l~~ 289 (480)
+.++||.||+|+|||.||+.+|..++.+|.-.||+.+.. ++-+.+++..+ .+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 457999999999999999999999999999999987753 34467777543 4779999999999874
Q ss_pred Ccc---------cccchhhhhhhccccccc--------ccCCceEEEEecCC-------CccCcccccCCCcee-EEEEc
Q 011664 290 EKP---------AAVSLSGVLNFMDGVLNS--------CCFEERVMVFTMNS-------KDHVDQALLRPGRID-VHIHF 344 (480)
Q Consensus 290 ~~~---------~~~~ls~lL~~ldg~~~~--------~~~~~~ivI~tTN~-------~~~LD~aLlrpGRfd-~~I~~ 344 (480)
... +......||..++|-.-. ...+..|.|=|||- -..||.-+-| |++ ..+-|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 221 122345578777753211 11223444445542 3457777777 775 67778
Q ss_pred CCCC
Q 011664 345 PLCD 348 (480)
Q Consensus 345 ~~p~ 348 (480)
..|+
T Consensus 384 g~~s 387 (564)
T KOG0745|consen 384 GAPS 387 (564)
T ss_pred CCCC
Confidence 8773
No 214
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.71 E-value=1.8e-08 Score=90.16 Aligned_cols=126 Identities=21% Similarity=0.333 Sum_probs=75.2
Q ss_pred cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC---cEEEEeCCCcCChHHHHHHH
Q 011664 194 METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY---DVYDVDLSRVADDADLKSLL 270 (480)
Q Consensus 194 g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~---~~~~i~~s~~~~~~~l~~l~ 270 (480)
|....-+++++.+..... ....+||+|+|||||+++|+++....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 445556666666665532 2456999999999999999999987754 45555655433 3344
Q ss_pred HhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc------CcccccCCCcee-EEEE
Q 011664 271 LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH------VDQALLRPGRID-VHIH 343 (480)
Q Consensus 271 ~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~------LD~aLlrpGRfd-~~I~ 343 (480)
.++ .+..|+|+|||.+.. .....|++.++.... .+-++|..++..++. +++.|.. |+. ..|.
T Consensus 66 ~~a-~~gtL~l~~i~~L~~-----~~Q~~L~~~l~~~~~---~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~ 134 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLSP-----EAQRRLLDLLKRQER---SNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIH 134 (138)
T ss_dssp HHC-TTSEEEEECGCCS-H-----HHHHHHHHHHHHCTT---TTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEE
T ss_pred HHc-CCCEEEECChHHCCH-----HHHHHHHHHHHhcCC---CCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEe
Confidence 443 788999999999842 233445555543222 234544444444433 5666666 665 5666
Q ss_pred cCC
Q 011664 344 FPL 346 (480)
Q Consensus 344 ~~~ 346 (480)
+|+
T Consensus 135 lPp 137 (138)
T PF14532_consen 135 LPP 137 (138)
T ss_dssp E--
T ss_pred CCC
Confidence 664
No 215
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.71 E-value=7.4e-08 Score=103.68 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=85.4
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc--EEEEeCCCcCC-
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD--VYDVDLSRVAD- 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~--~~~i~~s~~~~- 262 (480)
+..|+++.|++.+++.+.-.+ .....++|.||||||||+++++++..+-.. -..++.+.+.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 348999999988877655322 123479999999999999999999754110 00111111000
Q ss_pred --------------------hHHHHHHH----------HhhcCCcEEEEecccccccCcccccchhhhhhhccccc---c
Q 011664 263 --------------------DADLKSLL----------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL---N 309 (480)
Q Consensus 263 --------------------~~~l~~l~----------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~---~ 309 (480)
......++ .......+|||||++.+. ...+..|++.|+.-. .
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~-----~~~~~~L~~~LE~~~v~i~ 327 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK-----RSVLDALREPIEDGSISIS 327 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC-----HHHHHHHHHHHHcCcEEEE
Confidence 00000111 122345899999999773 233444555553211 0
Q ss_pred c-----ccCCceEEEEecCCC-----c------------------cCcccccCCCceeEEEEcCCCCHHH
Q 011664 310 S-----CCFEERVMVFTMNSK-----D------------------HVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 310 ~-----~~~~~~ivI~tTN~~-----~------------------~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
. .......+|+|+|.- . .+..+|+. |||.++.++.++.++
T Consensus 328 r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 328 RASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred ecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 0 012345677788742 1 47888999 999999999987663
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=98.70 E-value=1.7e-08 Score=100.05 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=60.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh-------HHHHHHHHh-hcCCcEEEEecccccccCcc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD-------ADLKSLLLQ-TTSKSVILIEDLDRFLVEKP 292 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~-------~~l~~l~~~-~~~~sII~IDEiD~l~~~~~ 292 (480)
..+++|+||||||||+|+.+++..+ |..+..++..++... ..+...+.+ ...+.+++|||++....+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 4579999999999999999998653 777877776554311 123334433 45778999999987643333
Q ss_pred cccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 293 AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 293 ~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
.. ..|++.++.... .+ -+|+|||.+
T Consensus 182 ~~---~~lf~li~~r~~----~~-s~iiTsn~~ 206 (259)
T PRK09183 182 EA---NLFFQVIAKRYE----KG-SMILTSNLP 206 (259)
T ss_pred HH---HHHHHHHHHHHh----cC-cEEEecCCC
Confidence 22 234444443322 12 367788854
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=7.4e-08 Score=98.51 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=88.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCC-------------------------CcEEEEeCCC----------cCChHHH
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMS-------------------------YDVYDVDLSR----------VADDADL 266 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~-------------------------~~~~~i~~s~----------~~~~~~l 266 (480)
..+.++||+||+|+|||++|+++|+.+. .+++.++... ..+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3566899999999999999999998652 2466665421 1234456
Q ss_pred HHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeE
Q 011664 267 KSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDV 340 (480)
Q Consensus 267 ~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~ 340 (480)
|.+.... ....|++||+++.+- ....+.++..++... .+..+|++|+.++.+.+.+.+ |+ .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~S--Rc-~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----LQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKS--RC-R 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----HHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHH--Hh-h
Confidence 6655332 245799999999883 234466777665432 346678889999999999998 88 5
Q ss_pred EEEcCCCCHHHHHHHHHH
Q 011664 341 HIHFPLCDFSSFKTLASS 358 (480)
Q Consensus 341 ~I~~~~p~~~~r~~il~~ 358 (480)
.+.|++|+.++..+.+..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 899999999887666543
No 218
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.69 E-value=1.2e-06 Score=86.39 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=84.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC-cEEEEe--CCCcC-----------------Ch--H----HHHHHHH---hhcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY-DVYDVD--LSRVA-----------------DD--A----DLKSLLL---QTTSK 276 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~-~~~~i~--~s~~~-----------------~~--~----~l~~l~~---~~~~~ 276 (480)
-++|+||+|+|||++++.+++.+.. .+.... .+... +. . .+...+. ....+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998763 222111 11110 00 0 1111111 12457
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc---cCc----ccccCCCceeEEEEcCCCCH
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD---HVD----QALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~---~LD----~aLlrpGRfd~~I~~~~p~~ 349 (480)
.+|+|||++.+... ....+..+.+.. .. ......||++ ..++ .+. ..+.+ |+...+++++.+.
T Consensus 125 ~vliiDe~~~l~~~--~~~~l~~l~~~~---~~--~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~l~~ 194 (269)
T TIGR03015 125 ALLVVDEAQNLTPE--LLEELRMLSNFQ---TD--NAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHLGPLDR 194 (269)
T ss_pred eEEEEECcccCCHH--HHHHHHHHhCcc---cC--CCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeCCCCCH
Confidence 89999999987321 111122222221 11 0112223333 2222 221 23555 8888999999999
Q ss_pred HHHHHHHHHHhccCC----CCCch-hHHHHHHhCCCCCHHHHHHHHHH
Q 011664 350 SSFKTLASSYLGLKD----HKLFP-QVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 350 ~~r~~il~~~l~~~~----~~l~~-~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
++...++...+...+ ..+.+ .++.|...+.|. |..|..+|..
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~ 241 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDR 241 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHH
Confidence 999998887775322 22332 345566666554 4446665543
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2.7e-07 Score=93.98 Aligned_cols=123 Identities=9% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC-----------------------CcEEEEeCC---CcCChHHHHHHHHhh---
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS-----------------------YDVYDVDLS---RVADDADLKSLLLQT--- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~-----------------------~~~~~i~~s---~~~~~~~l~~l~~~~--- 273 (480)
.+.++||+||.|+||+++|.++|..+- -+++.+... ...+-.+++.+....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 456899999999999999999998552 246666543 223445566654322
Q ss_pred ---cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHH
Q 011664 274 ---TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFS 350 (480)
Q Consensus 274 ---~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~ 350 (480)
....|++||++|.+. ....+.||..++.- +.+.++|++|+.++.|-|.+++ |+. .+.|+.|+.+
T Consensus 104 ~~~~~~kV~iI~~ae~m~-----~~AaNaLLKtLEEP-----p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~ 170 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMN-----ESASNALLKTLEEP-----APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTA 170 (319)
T ss_pred cccCCceEEEecchhhhC-----HHHHHHHHHHhcCC-----CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHH
Confidence 235799999999883 34457788888642 4568889999999999999999 995 8999999998
Q ss_pred HHHHHHHH
Q 011664 351 SFKTLASS 358 (480)
Q Consensus 351 ~r~~il~~ 358 (480)
+..+.+..
T Consensus 171 ~~~~~L~~ 178 (319)
T PRK06090 171 QAMQWLKG 178 (319)
T ss_pred HHHHHHHH
Confidence 87776654
No 220
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=9.8e-08 Score=84.23 Aligned_cols=114 Identities=18% Similarity=0.316 Sum_probs=72.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC--CcEEEEeCCCcCChHH----HHHHHHhh--cCCcEEEEecccccccCcccccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS--YDVYDVDLSRVADDAD----LKSLLLQT--TSKSVILIEDLDRFLVEKPAAVS 296 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~--~~~~~i~~s~~~~~~~----l~~l~~~~--~~~sII~IDEiD~l~~~~~~~~~ 296 (480)
+.++|+||.|||||++++.++..+. .+++++++.+...... +.+.+.+. ..+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh---------
Confidence 4689999999999999999998876 8899999876543211 23334333 36799999999977
Q ss_pred hhhhhhhcccccccccCCceEEEEecCCCc---cCcccccCCCceeEEEEcCCCCHHHH
Q 011664 297 LSGVLNFMDGVLNSCCFEERVMVFTMNSKD---HVDQALLRPGRIDVHIHFPLCDFSSF 352 (480)
Q Consensus 297 ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~---~LD~aLlrpGRfd~~I~~~~p~~~~r 352 (480)
..+...+..+... ..+..+++.+++... .....| +||.. .+++.+.+..++
T Consensus 74 -~~~~~~lk~l~d~-~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 -PDWEDALKFLVDN-GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFREF 127 (128)
T ss_pred -ccHHHHHHHHHHh-ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHHh
Confidence 2222233333221 112344454444322 223334 35885 889999888764
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=1.3e-07 Score=102.22 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=100.0
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEE-
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV- 255 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i- 255 (480)
.|. ..-.|.+.++|+.+....++++..+...+. +....+-+||+||||||||++++++|+++|..+..-
T Consensus 8 ~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 8 PWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 463 456789999999998888888777765332 233455678999999999999999999999877653
Q ss_pred eCCCc----------CC-----h---HH---HHHH-HHh-------------hcCCcEEEEecccccccCcccccchhhh
Q 011664 256 DLSRV----------AD-----D---AD---LKSL-LLQ-------------TTSKSVILIEDLDRFLVEKPAAVSLSGV 300 (480)
Q Consensus 256 ~~s~~----------~~-----~---~~---l~~l-~~~-------------~~~~sII~IDEiD~l~~~~~~~~~ls~l 300 (480)
+...+ .+ + +. ...+ +.. ...+.||+|||+-.++.... ..|
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-----~~f 152 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-----SRF 152 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-----HHH
Confidence 21111 00 0 01 1111 100 12468999999987654332 222
Q ss_pred hhhcccccccccCC-ceEEEEe-c------CCCc--------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 301 LNFMDGVLNSCCFE-ERVMVFT-M------NSKD--------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 301 L~~ldg~~~~~~~~-~~ivI~t-T------N~~~--------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
-+.|..... .... ..|||+| + |... -+++.++.-.++ .+|.|.+-.....++.+++.+.
T Consensus 153 ~~~L~~~l~-~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 153 REALRQYLR-SSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILK 227 (519)
T ss_pred HHHHHHHHH-cCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 222222211 1112 4555665 1 1111 245555543344 5899998888777777776654
No 222
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.66 E-value=2.4e-07 Score=98.88 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=124.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADL 266 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l 266 (480)
..++|....-.++.+.+.... .....+++.|.+||||+++|+++.... +.+|+.++|..+..+.--
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 457777776666665554321 123469999999999999999998865 568999999887432222
Q ss_pred HHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc-----ccCCceEEEEecC
Q 011664 267 KSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS-----CCFEERVMVFTMN 323 (480)
Q Consensus 267 ~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~-----~~~~~~ivI~tTN 323 (480)
..+|. ....++.|||||||.+.. .....|+..++.-. .. ....+.-+|+||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-----~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-----DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-----HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 22322 112468899999998843 22355665554211 00 0011234666665
Q ss_pred CC-c------cCcccccCCCcee-EEEEcCCCC--HHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SK-D------HVDQALLRPGRID-VHIHFPLCD--FSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~-~------~LD~aLlrpGRfd-~~I~~~~p~--~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.. + .+.+.|.. |+. .+|++|+.. .++...++..++.... ........++|+..+..++...
T Consensus 278 ~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAA-------RELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred CCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHH-------HHhCCCCCCcCHHHHHHHHhCC
Confidence 32 2 33445555 554 477777766 4566667777663211 0111122589999999999999
Q ss_pred hhcHHHHHHHHHHHHHhcC
Q 011664 394 RNSPSRALKSVITALQTDG 412 (480)
Q Consensus 394 ~~~~~~al~~~i~~~~~~~ 412 (480)
+...++.|+.+++.+-...
T Consensus 349 wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 9999999999998876543
No 223
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.65 E-value=2.2e-07 Score=88.64 Aligned_cols=156 Identities=19% Similarity=0.292 Sum_probs=81.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCCCcCC--------------------------------------
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLSRVAD-------------------------------------- 262 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s~~~~-------------------------------------- 262 (480)
...++|+||.|+|||+|++.+.+.+... .++++......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4579999999999999999999988321 11221111110
Q ss_pred ---hHHHHHHH---HhhcCCcEEEEecccccc-cCcccccchhhhhhhcccccccccCCceEEEE-ecCCC---c--cCc
Q 011664 263 ---DADLKSLL---LQTTSKSVILIEDLDRFL-VEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF-TMNSK---D--HVD 329 (480)
Q Consensus 263 ---~~~l~~l~---~~~~~~sII~IDEiD~l~-~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~-tTN~~---~--~LD 329 (480)
...+..++ .+...+.||+|||++.+. ........+..|.+.++.... ..+..+|+ ++... + .-.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS---QQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-------TTEEEEEEESSHHHHHHTT-TT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc---cCCceEEEECCchHHHHHhhccc
Confidence 01122222 222345899999999997 333334445666666665433 33444444 44311 1 122
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCC---chhHHHHHHhCCCCCHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKL---FPQVEEIFQNGSSLSPAEIG 387 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l---~~~i~~l~~~~~g~s~adI~ 387 (480)
..+.. |+.. +.+++.+.++..+++...+... ..+ ..+++++...+ |-.|.-|.
T Consensus 177 ~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-gG~P~~l~ 232 (234)
T PF01637_consen 177 SPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT-GGNPRYLQ 232 (234)
T ss_dssp STTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHH-TT-HHHHH
T ss_pred Ccccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh-CCCHHHHh
Confidence 34444 8876 9999999999999998876544 322 23455665555 44454443
No 224
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.63 E-value=3.2e-07 Score=97.76 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=117.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHH
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDAD 265 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~ 265 (480)
+..++|....-..+.+.+..... ....+|++|++||||+++|+++.... +.+|+.++|..+..+.-
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 34566665555555544443321 23479999999999999999998764 57899999998754322
Q ss_pred HHHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc-ccCCceEEEEec
Q 011664 266 LKSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS-CCFEERVMVFTM 322 (480)
Q Consensus 266 l~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~-~~~~~~ivI~tT 322 (480)
-..+|.. .....+|||||||.+.. .....|+..++.-. .. ....+..||+||
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~-----~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t 285 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL-----VLQAKLLRILQEREFERIGGHQTIKVDIRIIAAT 285 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH-----HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeC
Confidence 2233321 12457999999999843 22355565554211 00 001124577777
Q ss_pred CCC-c------cCcccccCCCceeEEEEcCCCCHHHHH----HHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 323 NSK-D------HVDQALLRPGRIDVHIHFPLCDFSSFK----TLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 323 N~~-~------~LD~aLlrpGRfd~~I~~~~p~~~~r~----~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
|.. . .+.+.|.. |+. .+.+..|...+|. .++..++.... ........++++..+..+..
T Consensus 286 ~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 286 NRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFS-------SENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred CCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHHHc
Confidence 643 1 23333443 442 3455555555543 34444442110 01111235899999999998
Q ss_pred HhhhcHHHHHHHHHHHHHhc
Q 011664 392 ANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 392 ~a~~~~~~al~~~i~~~~~~ 411 (480)
..+...++.|+.+++.+-..
T Consensus 356 ~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 356 WSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CCCCCcHHHHHHHHHHHHHh
Confidence 88999999999999876554
No 225
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.61 E-value=3.3e-08 Score=84.71 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=54.8
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG 306 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg 306 (480)
|.||||||+|||++|+.+|..+...+-......+.....-.+.+.......++++||+....... .....+++++.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~~~-~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDNDGY-NYSDESELIRLISS 79 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccccc-chHHHHHHHHHHhc
Confidence 57999999999999999998664322111111110001111334445567899999999775332 22245556665542
Q ss_pred c---------ccc-ccCCceEEEEecCC
Q 011664 307 V---------LNS-CCFEERVMVFTMNS 324 (480)
Q Consensus 307 ~---------~~~-~~~~~~ivI~tTN~ 324 (480)
. ... ..-...+||+|||.
T Consensus 80 ~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 80 NPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred CCcccccccHhhCCCccCCCEEEEcCCC
Confidence 2 110 11233688889984
No 226
>PRK15115 response regulator GlrR; Provisional
Probab=98.58 E-value=4.4e-07 Score=96.41 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=104.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHHHHHHh-----------------hcCCcEEEEec
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLKSLLLQ-----------------TTSKSVILIED 283 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~~l~~~-----------------~~~~sII~IDE 283 (480)
...++++|++|||||++|+++.... +.+|+.++|..+..+.--..+|.. ......|||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 3469999999999999999998865 478999999887433222233321 22457999999
Q ss_pred ccccccCcccccchhhhhhhccccc-cccc-----CCceEEEEecCCCccCcccccCCCcee-------EEEEcCCCCHH
Q 011664 284 LDRFLVEKPAAVSLSGVLNFMDGVL-NSCC-----FEERVMVFTMNSKDHVDQALLRPGRID-------VHIHFPLCDFS 350 (480)
Q Consensus 284 iD~l~~~~~~~~~ls~lL~~ldg~~-~~~~-----~~~~ivI~tTN~~~~LD~aLlrpGRfd-------~~I~~~~p~~~ 350 (480)
||.+.. .....|+..++.-. .... .....+|+||+.. ++..+. .|+|. ..+.+..|...
T Consensus 237 i~~l~~-----~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~l~~~~i~lPpLr 308 (444)
T PRK15115 237 IGDMPA-----PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYYRLNVVSLKIPALA 308 (444)
T ss_pred cccCCH-----HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHHhhceeeecCCChH
Confidence 998843 22344555553211 0000 1134567777642 332222 23441 23455555555
Q ss_pred HHH----HHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 011664 351 SFK----TLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 351 ~r~----~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~~~ 411 (480)
+|. .|++.++.... ........++|+.-+..+....+...++.|+.+++.+-..
T Consensus 309 ~R~eDi~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAA-------ERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hccccHHHHHHHHHHHHH-------HHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 553 34444442110 0011122479999999999999999999999999876543
No 227
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.54 E-value=1.6e-06 Score=85.51 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=45.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCCCc
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLSRV 260 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s~~ 260 (480)
-..++|++++++..- .+...++.+.. ..|++||.||||||||.||-+|++++|. +|+....|++
T Consensus 37 ~~g~vGQ~~AReAag-iivdlik~Kkm-------aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 37 AAGFVGQENAREAAG-IIVDLIKSKKM-------AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred ccccccchhhhhhhh-HHHHHHHhhhc-------cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 356789988887643 33344444332 4578999999999999999999999975 4554444443
No 228
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.53 E-value=2.4e-07 Score=92.42 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=103.2
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc------EEE
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD------VYD 254 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~------~~~ 254 (480)
++..+|..++++++++++...+.+. ...+. -...|+|||||||||+.+.|.|+.+-.+ +..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~-----------~~~~~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRY-----------SGMPG--LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHh-----------ccCCC--CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 4677889999999998877766542 22221 1279999999999999999999977442 223
Q ss_pred EeCCCcCCh---HHHHHHHHhhc---------CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec
Q 011664 255 VDLSRVADD---ADLKSLLLQTT---------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM 322 (480)
Q Consensus 255 i~~s~~~~~---~~l~~l~~~~~---------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT 322 (480)
+++|+-.+- ..-...|+.+. ....+++||.|++.. . ..++|-..+... ..+.-|+.-+
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--~---AQnALRRviek~-----t~n~rF~ii~ 168 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--D---AQNALRRVIEKY-----TANTRFATIS 168 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--H---HHHHHHHHHHHh-----ccceEEEEec
Confidence 344443331 11223344333 568999999998742 2 223333333322 2334455678
Q ss_pred CCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCC
Q 011664 323 NSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDH 365 (480)
Q Consensus 323 N~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~ 365 (480)
|++..+.|++.+ ||. ...|.+.+.+.-....+.++.....
T Consensus 169 n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 169 NPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred cChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 999999999999 885 6677777766666666666654443
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.52 E-value=5.9e-07 Score=89.92 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=108.3
Q ss_pred cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCCcCChH
Q 011664 194 METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSRVADDA 264 (480)
Q Consensus 194 g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~~~~~~ 264 (480)
|.+.+++ +.+.+...+..|.. ....++||+|++|.|||++++..+... ..+++.+.+..-.++.
T Consensus 38 gY~~A~~-~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 38 GYPRAKE-ALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCHHHHH-HHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3344443 34455555555432 223489999999999999999998643 2467777765444333
Q ss_pred HHHHH------------------------HHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE
Q 011664 265 DLKSL------------------------LLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 265 ~l~~l------------------------~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
.+... +.+..+..+|+|||++.++.... ....+++|.+..+.+. ..=..|.++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~--~~qr~~Ln~LK~L~Ne-L~ipiV~vG 187 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY--RKQREFLNALKFLGNE-LQIPIVGVG 187 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--HHHHHHHHHHHHHhhc-cCCCeEEec
Confidence 22111 12234668999999999764332 2345667777666441 111223333
Q ss_pred ecCC--CccCcccccCCCceeEEEEcCCCCH-HHHHHHHHHHhccCCC----CCc-hhH-HHHHHhCCCCCHHHHHHHHH
Q 011664 321 TMNS--KDHVDQALLRPGRIDVHIHFPLCDF-SSFKTLASSYLGLKDH----KLF-PQV-EEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 321 tTN~--~~~LD~aLlrpGRfd~~I~~~~p~~-~~r~~il~~~l~~~~~----~l~-~~i-~~l~~~~~g~s~adI~~ll~ 391 (480)
|..- .=.-|+.|-+ ||+ .+.+|.... +++..++..+-...+. .+. .++ ..|...+.|.+| ++..++.
T Consensus 188 t~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~ 263 (302)
T PF05621_consen 188 TREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLN 263 (302)
T ss_pred cHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHH
Confidence 3221 1223788888 997 566665443 4566676665432221 122 233 567777767666 6777776
Q ss_pred HhhhcHH
Q 011664 392 ANRNSPS 398 (480)
Q Consensus 392 ~a~~~~~ 398 (480)
.+...+.
T Consensus 264 ~aA~~AI 270 (302)
T PF05621_consen 264 AAAIAAI 270 (302)
T ss_pred HHHHHHH
Confidence 5544333
No 230
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.50 E-value=6e-07 Score=92.86 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-------Cc--------
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-------YD-------- 251 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-------~~-------- 251 (480)
-.|.-++|++..|..|.-.... +.-.|+|+-|+.|||||++++|+|..|. ++
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4588899999999887633221 2335899999999999999999998772 21
Q ss_pred -------------------------EEEEeCCC----cCChHHHHHHHH-----------hhcCCcEEEEecccccccCc
Q 011664 252 -------------------------VYDVDLSR----VADDADLKSLLL-----------QTTSKSVILIEDLDRFLVEK 291 (480)
Q Consensus 252 -------------------------~~~i~~s~----~~~~~~l~~l~~-----------~~~~~sII~IDEiD~l~~~~ 291 (480)
|..+.++. +.+.-++.+.+. ...+..|++|||+..+-
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc---
Confidence 11111110 112222333321 12356899999999773
Q ss_pred ccccchhhhhhhcc---------cccccccCCceEEEEecCCC-ccCcccccCCCceeEEEEcCCCC-HHHHHHHHHHHh
Q 011664 292 PAAVSLSGVLNFMD---------GVLNSCCFEERVMVFTMNSK-DHVDQALLRPGRIDVHIHFPLCD-FSSFKTLASSYL 360 (480)
Q Consensus 292 ~~~~~ls~lL~~ld---------g~~~~~~~~~~ivI~tTN~~-~~LD~aLlrpGRfd~~I~~~~p~-~~~r~~il~~~l 360 (480)
......||+.+. |+.- ...-..++|+|+|.- ..|-|.|+. ||...|.+.+|. .+.|.+|..+-+
T Consensus 158 --d~lvd~LLd~aaeG~n~vereGisi-~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 158 --DHLVDALLDVAAEGVNDVEREGISI-RHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred --HHHHHHHHHHHHhCCceeeeCceee-ccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHH
Confidence 334456666553 3322 223345778888844 578899999 999999998875 467888887766
Q ss_pred cc
Q 011664 361 GL 362 (480)
Q Consensus 361 ~~ 362 (480)
..
T Consensus 233 ~f 234 (423)
T COG1239 233 AF 234 (423)
T ss_pred Hh
Confidence 53
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.47 E-value=1.3e-06 Score=92.45 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=112.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLK 267 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~ 267 (480)
.+.|.......+.+.+.... .....++++|.+||||+++++++.... +.+|+.++|+.+.. ..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHH
Confidence 35555555555554443221 124579999999999999999998765 46899999997653 3333
Q ss_pred H-HHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhcccccccc------cCCceEEEEecC
Q 011664 268 S-LLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSC------CFEERVMVFTMN 323 (480)
Q Consensus 268 ~-l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~------~~~~~ivI~tTN 323 (480)
. +|. ....+++|||||||.+... ....|+..++.-.-.. -.-+..+|+||+
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-----~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-----MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-----HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCC
Confidence 3 332 1124678999999998532 2244555543211000 001233565554
Q ss_pred CCccCcccccCCCcee-------EEEEcCCCCHHH----HHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHH
Q 011664 324 SKDHVDQALLRPGRID-------VHIHFPLCDFSS----FKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd-------~~I~~~~p~~~~----r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
.+- ..+..+|+|. ..+.+..|...+ ...+++.++.... ........++|+..+..++..
T Consensus 283 ~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 283 RDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFA-------ERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred CCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHH-------HHhCCCCCCcCHHHHHHHHhC
Confidence 321 1222334442 134444444443 3445555543210 111112247999999999998
Q ss_pred hhhcHHHHHHHHHHHHHhc
Q 011664 393 NRNSPSRALKSVITALQTD 411 (480)
Q Consensus 393 a~~~~~~al~~~i~~~~~~ 411 (480)
.+...++.|+.+++.+-..
T Consensus 353 ~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 353 DWPGNIRELENAVERAVVL 371 (441)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 232
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.47 E-value=3.8e-07 Score=98.06 Aligned_cols=142 Identities=18% Similarity=0.315 Sum_probs=86.5
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC----------cEEEEe
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY----------DVYDVD 256 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~----------~~~~i~ 256 (480)
..|.++.|...+++.+.- -......++|+||||||||++++.+++.+.. .++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 478888888776665431 1123357999999999999999999986531 112111
Q ss_pred CC-----Cc-----CC---hHHHHHHH----------HhhcCCcEEEEecccccccCcccccchhhhhhhcc-ccc--cc
Q 011664 257 LS-----RV-----AD---DADLKSLL----------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-GVL--NS 310 (480)
Q Consensus 257 ~s-----~~-----~~---~~~l~~l~----------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-g~~--~~ 310 (480)
.. .+ .. ......++ .......+||+||++.+- ...+..|++.|+ +.. ..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~-----~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE-----RRTLDALREPIESGQIHLSR 327 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC-----HHHHHHHHHHHHcCcEEEec
Confidence 00 00 00 00111122 122345899999998762 244566666663 221 00
Q ss_pred -----ccCCceEEEEecCCCc---------------------cCcccccCCCceeEEEEcCCCCHH
Q 011664 311 -----CCFEERVMVFTMNSKD---------------------HVDQALLRPGRIDVHIHFPLCDFS 350 (480)
Q Consensus 311 -----~~~~~~ivI~tTN~~~---------------------~LD~aLlrpGRfd~~I~~~~p~~~ 350 (480)
.......+|+|+|... .|..+++. |||.++.+++|+.+
T Consensus 328 ~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 1123456788888542 47779999 99999999999876
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.44 E-value=1.8e-06 Score=93.75 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=85.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEeCCCcCChHH----------------------HHHHHH--
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVDLSRVADDAD----------------------LKSLLL-- 271 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~~s~~~~~~~----------------------l~~l~~-- 271 (480)
.+++.|-||||||.+++.+-.+| .+.++.||.-.+.+..+ +...|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57889999999999999998755 34566777655554222 122222
Q ss_pred -hhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCC---CccC-cccccCCCcee-EEEEcC
Q 011664 272 -QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS---KDHV-DQALLRPGRID-VHIHFP 345 (480)
Q Consensus 272 -~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~---~~~L-D~aLlrpGRfd-~~I~~~ 345 (480)
....++||+|||+|.++..+ ..-|.|++|.... .+...+||+..|. |+.+ ....-+ |++ .+|.|.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----QdVlYn~fdWpt~--~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~ 574 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----QDVLYNIFDWPTL--KNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQ 574 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----HHHHHHHhcCCcC--CCCceEEEEecccccCHHHHhccchhh--hccceeeecC
Confidence 12357999999999997533 2446677765543 2334444544443 3332 233334 776 789999
Q ss_pred CCCHHHHHHHHHHHhccC
Q 011664 346 LCDFSSFKTLASSYLGLK 363 (480)
Q Consensus 346 ~p~~~~r~~il~~~l~~~ 363 (480)
+++.++..+|+...|...
T Consensus 575 pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 575 PYTHEQLQEIISARLKGL 592 (767)
T ss_pred CCCHHHHHHHHHHhhcch
Confidence 999999999999888654
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9.1e-07 Score=99.61 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=83.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCC-CCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC---
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRV-WKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD--- 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~-~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~--- 262 (480)
+.|+|++++...|.+.+...-.+ ++.+ +.-.+||.||.|+|||-||+|+|..+ .-.++.+|++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 46889999999888888765332 2222 44568999999999999999999987 34699999986332
Q ss_pred ----------hHHHHHHHH--hhcCCcEEEEecccccccCcccccchhhhhhhcccccc------cccCCceEEEEecCC
Q 011664 263 ----------DADLKSLLL--QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN------SCCFEERVMVFTMNS 324 (480)
Q Consensus 263 ----------~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~------~~~~~~~ivI~tTN~ 324 (480)
....-.+.. +..+.+||+|||||.- +...++.|+..+|.-.- ...-.+.|||+|+|.
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 222223332 2245699999999964 33445666666652211 122346789999874
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.43 E-value=1.5e-06 Score=85.25 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=112.2
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CCcEE---------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVY--------- 253 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~--------- 253 (480)
-.|.+++.+.+.++....++.... . + ..| .+|+|||+|+||-|.+.++-+++ |..+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~----~-------~-d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS----T-------G-DFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc----c-------C-CCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 357788899999888887774322 0 1 112 69999999999999999998876 32111
Q ss_pred -------------------EEeCCCcCC-h-HHHHHHHH---hhc--------CCcEEEEecccccccCcccccchhhhh
Q 011664 254 -------------------DVDLSRVAD-D-ADLKSLLL---QTT--------SKSVILIEDLDRFLVEKPAAVSLSGVL 301 (480)
Q Consensus 254 -------------------~i~~s~~~~-~-~~l~~l~~---~~~--------~~sII~IDEiD~l~~~~~~~~~ls~lL 301 (480)
.++.|+... + --+++++. +.. .-.+++|-|+|.+.. .....|-
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-----dAQ~aLR 148 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-----DAQHALR 148 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----HHHHHHH
Confidence 111121111 1 11344442 221 236999999998842 2234455
Q ss_pred hhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHh
Q 011664 302 NFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQN 377 (480)
Q Consensus 302 ~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~ 377 (480)
..|+...+ ..-+|+.+|....+-+++++ |+ ..|.+|.|+.++-..+++..+..++..+..++ ..+++.
T Consensus 149 RTMEkYs~-----~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 149 RTMEKYSS-----NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred HHHHHHhc-----CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 56655443 34577788999999999999 88 58999999999999999999988887776554 344443
No 236
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.41 E-value=7.8e-07 Score=100.32 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=91.2
Q ss_pred ccccChHHHHHHHHHHHHHHhhhh--H--------HhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-------CcEE
Q 011664 191 TISMETDLKNRVKSDLESFLKAKH--Y--------YHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-------YDVY 253 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~--~--------~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-------~~~~ 253 (480)
.|.|++++|+.|.-.+ |-..+. . |........-.+||.|+||||||.+|+++++... .++.
T Consensus 451 ~I~G~e~vK~ailL~L--~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLLCQL--FSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHHHHH--hcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5788888888775332 211110 0 0001122233799999999999999999998543 3344
Q ss_pred EEeCCCcCC--h---HH--HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccc---------ccccccCCceE
Q 011664 254 DVDLSRVAD--D---AD--LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG---------VLNSCCFEERV 317 (480)
Q Consensus 254 ~i~~s~~~~--~---~~--l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~~i 317 (480)
.++++.... + .. +..-........+++|||+|.+. ....+.|++.|+. +.. .-....-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms-----~~~Q~aLlEaMEqqtIsI~KaGi~~-tL~ar~r 602 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH-----NESRLSLYEVMEQQTVTIAKAGIVA-TLKAETA 602 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC-----HHHHHHHHHHHhCCEEEEecCCcce-ecCCCeE
Confidence 444433211 0 00 00000112345799999999873 2233556666632 111 1123445
Q ss_pred EEEecCCC-------------ccCcccccCCCceeEE-EEcCCCCHHHHHHHHHHHh
Q 011664 318 MVFTMNSK-------------DHVDQALLRPGRIDVH-IHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 318 vI~tTN~~-------------~~LD~aLlrpGRfd~~-I~~~~p~~~~r~~il~~~l 360 (480)
||+|+|.. -.|+++|++ |||.. +-++.|+.+.=+.|+.+.+
T Consensus 603 VIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 603 ILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 77888864 136799999 99954 5677888776566655544
No 237
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.40 E-value=9.4e-06 Score=89.73 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=42.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
..-|++++|++++++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3578999999999887775553 12479999999999999999999998654
No 238
>PF05729 NACHT: NACHT domain
Probab=98.39 E-value=1.9e-06 Score=77.94 Aligned_cols=130 Identities=15% Similarity=0.263 Sum_probs=72.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC---------cEEEEeCCCcCChH---HHHHH------------------HHhhc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY---------DVYDVDLSRVADDA---DLKSL------------------LLQTT 274 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~---------~~~~i~~s~~~~~~---~l~~l------------------~~~~~ 274 (480)
|-++++|+||+|||++++.++..+.. -++.+.+....... .+... +....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35789999999999999999975511 13344443332211 12111 12234
Q ss_pred CCcEEEEecccccccCccc--ccchhhhh-hhcccccccccCCceEEEEecCCCc-cCcccccCCCceeEEEEcCCCCHH
Q 011664 275 SKSVILIEDLDRFLVEKPA--AVSLSGVL-NFMDGVLNSCCFEERVMVFTMNSKD-HVDQALLRPGRIDVHIHFPLCDFS 350 (480)
Q Consensus 275 ~~sII~IDEiD~l~~~~~~--~~~ls~lL-~~ldg~~~~~~~~~~ivI~tTN~~~-~LD~aLlrpGRfd~~I~~~~p~~~ 350 (480)
.+.+|+||.+|.+...... ......++ +.+..- ...+-+++|.+..... .+...+-. . ..++++..+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA---LPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc---cCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHH
Confidence 6789999999998753322 11222222 223221 1123344444332221 22222222 1 57899999999
Q ss_pred HHHHHHHHHhc
Q 011664 351 SFKTLASSYLG 361 (480)
Q Consensus 351 ~r~~il~~~l~ 361 (480)
+..++++.|+.
T Consensus 154 ~~~~~~~~~f~ 164 (166)
T PF05729_consen 154 DIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 239
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.3e-05 Score=79.29 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=88.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC-------------cEEEEeC-CCcCChHHHHHHHHhh-------cCCcEEEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY-------------DVYDVDL-SRVADDADLKSLLLQT-------TSKSVILI 281 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------~~~~i~~-s~~~~~~~l~~l~~~~-------~~~sII~I 281 (480)
.+..|||+|+.|+||+.++.++|+.+-+ ++..++. ..-.+-.+++.+.... ....|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 4568999999999999999999987611 3344441 1122334566554332 26689999
Q ss_pred ecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 011664 282 EDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASS 358 (480)
Q Consensus 282 DEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~ 358 (480)
|++|.+. ....+.||..++.- ++..++|++|+.++.|-|.+++ |+. .++|++++.++....+..
T Consensus 97 ~~~e~m~-----~~a~NaLLK~LEEP-----p~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 97 KNIEKTS-----NSLLNALLKTIEEP-----PKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ecccccC-----HHHHHHHHHHhhCC-----CCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHHHHHHHHHH
Confidence 9998773 33456788888653 4567888888888999999998 884 899999998887665543
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=9.2e-07 Score=77.35 Aligned_cols=65 Identities=25% Similarity=0.470 Sum_probs=43.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC--------CCcEEEEeCCCcCChHHHH---------------------HHHHh--
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM--------SYDVYDVDLSRVADDADLK---------------------SLLLQ-- 272 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l--------~~~~~~i~~s~~~~~~~l~---------------------~l~~~-- 272 (480)
.+.++++||||+|||++++.++..+ +.+++.+++....+...+. ..+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 7788888765544322221 11111
Q ss_pred -hcCCcEEEEecccccc
Q 011664 273 -TTSKSVILIEDLDRFL 288 (480)
Q Consensus 273 -~~~~sII~IDEiD~l~ 288 (480)
.....+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 1122599999999974
No 241
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.35 E-value=3.1e-06 Score=82.54 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=75.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHh-hcCCcEEEEecccccccCcccccchhhhh
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQ-TTSKSVILIEDLDRFLVEKPAAVSLSGVL 301 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~-~~~~sII~IDEiD~l~~~~~~~~~ls~lL 301 (480)
...|-.++||+|||||..++++|..+|..++..+|++-.+...+.++|.. +...+-+++||++.+-.+- -..+++.+
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~v--LS~i~~~i 108 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEV--LSVISQQI 108 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHH--HHHHHHHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHH--HHHHHHHH
Confidence 34577899999999999999999999999999999999988888888854 4578999999999873211 11112212
Q ss_pred hhc-cccccc-----------ccCCceEEEEecC----CCccCcccccCCCceeEEEEcCCCCHHHHHHHH
Q 011664 302 NFM-DGVLNS-----------CCFEERVMVFTMN----SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356 (480)
Q Consensus 302 ~~l-dg~~~~-----------~~~~~~ivI~tTN----~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il 356 (480)
..+ +.+... .-..+.-+++|.| ....|++.|+. -| +-|.+..||.+...++.
T Consensus 109 ~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 109 QSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHHH
T ss_pred HHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHHH
Confidence 111 111110 0011122344555 23567877764 34 78999999987655443
No 242
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.7e-07 Score=94.29 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=39.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..+|.||.|++..|+.+..... -..++|++||||||||++|+-+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4589999999999998874332 24589999999999999999987644
No 243
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.33 E-value=2.4e-06 Score=89.88 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=128.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD 262 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~ 262 (480)
...+..|+|....-..+.+.+...... .-.|||.|.+||||-.+|++|.... ..+|+.+||..+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 457889999999999988887755332 3479999999999999999999876 56899999988764
Q ss_pred hHHHHHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhcc-----ccccc-ccCCceEEE
Q 011664 263 DADLKSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-----GVLNS-CCFEERVMV 319 (480)
Q Consensus 263 ~~~l~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-----g~~~~-~~~~~~ivI 319 (480)
.--=.++|.. .....-||+|||..+.. .....||..+. .+.++ .-.-.+-||
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-----~lQaKLLRvLQegEieRvG~~r~ikVDVRiI 362 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-----ALQAKLLRVLQEGEIERVGGDRTIKVDVRVI 362 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-----HHHHHHHHHHhhcceeecCCCceeEEEEEEE
Confidence 2111233411 13568999999987632 12244555443 22221 001134589
Q ss_pred EecCCCccCcccccCCCcee-------EEEEcCCCCHHHHH----HHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHH
Q 011664 320 FTMNSKDHVDQALLRPGRID-------VHIHFPLCDFSSFK----TLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 320 ~tTN~~~~LD~aLlrpGRfd-------~~I~~~~p~~~~r~----~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ 388 (480)
+|||+ +|-.+.. .|+|- .++.+..|...+|. -++..|+.... .++......+|+..+..
T Consensus 363 AATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~-------~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 363 AATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFR-------RRLGRAILSLSAEALEL 432 (550)
T ss_pred eccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHH-------HhcCCcccccCHHHHHH
Confidence 99995 3333332 24442 24445555554442 23333432211 11222245789999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhcC
Q 011664 389 LMIANRNSPSRALKSVITALQTDG 412 (480)
Q Consensus 389 ll~~a~~~~~~al~~~i~~~~~~~ 412 (480)
++...+...+|.|+++++.....+
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 998889999999999998877754
No 244
>PHA00729 NTP-binding motif containing protein
Probab=98.32 E-value=7e-07 Score=86.31 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=56.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC----------cCChHHHHHH----HHhhcCCcEEEEecccccccCc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR----------VADDADLKSL----LLQTTSKSVILIEDLDRFLVEK 291 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~----------~~~~~~l~~l----~~~~~~~sII~IDEiD~l~~~~ 291 (480)
.++++||||||||+||.++|..++..+..+.... +.+...+... +.......+|+|||+..-....
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~ 98 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKY 98 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhccc
Confidence 7999999999999999999998764333321110 1112222222 2222234689999976544321
Q ss_pred ccc----cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCC
Q 011664 292 PAA----VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPG 336 (480)
Q Consensus 292 ~~~----~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpG 336 (480)
.-. .....+.+.+. + .-.++++++..++.|-..|+..|
T Consensus 99 ~wh~~~~~~yf~L~~aLr---S----R~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 99 VWYEDYMKTFYKIYALIR---T----RVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred chhhhccchHHHHHHHHH---h----hCcEEEEecCCHHHHHHHHHhCC
Confidence 000 11112222221 1 23456777777777776666533
No 245
>PHA02624 large T antigen; Provisional
Probab=98.32 E-value=2.3e-06 Score=92.60 Aligned_cols=119 Identities=20% Similarity=0.286 Sum_probs=79.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccC------ccc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVE------KPA 293 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~------~~~ 293 (480)
|.|.++.++||||||||||++++++++.++-..+.++.+.- .+...+.-.....+.+|||+-.-+-. ...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~----ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~ 502 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD----KLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQG 502 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc----hhHHHhhhhhhceEEEeeeccccccccccCCcccc
Confidence 56778899999999999999999999999766777764432 23333444456679999999643321 112
Q ss_pred ccchhhhhhhcccccccccCC-----c-----eEEEEecCCCccCcccccCCCceeEEEEcCC
Q 011664 294 AVSLSGVLNFMDGVLNSCCFE-----E-----RVMVFTMNSKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~~~~~-----~-----~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
-..+.-|-+.+||-.. .+-+ . --.|+|||. ..|+..+.- ||-+++.|..
T Consensus 503 ~dNl~~lRn~LDG~V~-v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 503 MNNLDNLRDYLDGSVP-VNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cchhhHHHhhcCCCCc-cccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 2234567788888621 0000 1 125778884 356777777 9988888865
No 246
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.32 E-value=5.1e-07 Score=93.54 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHcCCC-cEEEEeCCCcCC------------hHHHHHHHHhhcC-CcEEEEecccc
Q 011664 221 RVWKRSYLLYGPSGTGKSSFAAAMASFMSY-DVYDVDLSRVAD------------DADLKSLLLQTTS-KSVILIEDLDR 286 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-~~~~i~~s~~~~------------~~~l~~l~~~~~~-~sII~IDEiD~ 286 (480)
.+.++|++||||+|+|||+|+-...+.+.. .--.+-...++. ...+..+..+..+ -.||+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 457899999999999999999999887743 111111111111 1112222222233 34999999985
Q ss_pred cccCcccccchhhhhhhcccccccccCCceEEEEecC-CCccC
Q 011664 287 FLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKDHV 328 (480)
Q Consensus 287 l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~~L 328 (480)
- +..+...+..|++.+ . ..++++|+|+| .|++|
T Consensus 139 ~--DiaDAmil~rLf~~l---~----~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 139 T--DIADAMILKRLFEAL---F----KRGVVLVATSNRPPEDL 172 (362)
T ss_pred c--chhHHHHHHHHHHHH---H----HCCCEEEecCCCChHHH
Confidence 3 344555667777655 2 36788999999 45555
No 247
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=2.2e-05 Score=93.16 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=91.2
Q ss_pred eCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcE---EEEe
Q 011664 180 SVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDV---YDVD 256 (480)
Q Consensus 180 ~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~---~~i~ 256 (480)
.+...++..+++++|.++..+++.+.+. .+....+-+-++||+|+||||||+++++.+...| +.++
T Consensus 174 ~l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 174 KLNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred hhccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 3445566788999999988888776543 1222345688999999999999999988764332 1121
Q ss_pred C---CC---cCC---------hHH-----HHHHHH--------------h-hcCCcEEEEecccccccCcccccchhhhh
Q 011664 257 L---SR---VAD---------DAD-----LKSLLL--------------Q-TTSKSVILIEDLDRFLVEKPAAVSLSGVL 301 (480)
Q Consensus 257 ~---s~---~~~---------~~~-----l~~l~~--------------~-~~~~sII~IDEiD~l~~~~~~~~~ls~lL 301 (480)
. +. ... ... +..++. . ...+.+|++||+|.. ..+..+.
T Consensus 243 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------~~l~~L~ 315 (1153)
T PLN03210 243 RAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------DVLDALA 315 (1153)
T ss_pred ccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------HHHHHHH
Confidence 1 00 000 000 111110 0 135679999999742 1122222
Q ss_pred hhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC
Q 011664 302 NFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK 363 (480)
Q Consensus 302 ~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~ 363 (480)
...+.. +.+.-||+||.... +++....+..++++.|+.++-.+++..+....
T Consensus 316 ~~~~~~-----~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 316 GQTQWF-----GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred hhCccC-----CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 222211 22334566666433 33323467789999999999899998886543
No 248
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=2.5e-05 Score=81.65 Aligned_cols=185 Identities=13% Similarity=0.129 Sum_probs=115.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcCCh
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVADD 263 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~~~ 263 (480)
-.++.|-++....+.+.+...+.. .-.+++.+.|-||||||.+..-+-..+ +...++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 456777777777666554444332 245689999999999999888665544 235688888875532
Q ss_pred HH---------------------HHHHHHh----hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEE
Q 011664 264 AD---------------------LKSLLLQ----TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVM 318 (480)
Q Consensus 264 ~~---------------------l~~l~~~----~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~iv 318 (480)
.. ....|.+ ...+-|+++||+|.++... +..+-.+. +++.+ .....++
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--~~vLy~lF-ewp~l----p~sr~iL 292 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--QTVLYTLF-EWPKL----PNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--cceeeeeh-hcccC----Ccceeee
Confidence 21 1122221 2246799999999997322 22222222 22222 2355677
Q ss_pred EEecCCCccCcccccC----CCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc--hhHHHHHHhCCCCCHHHHHHHH
Q 011664 319 VFTMNSKDHVDQALLR----PGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF--PQVEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 319 I~tTN~~~~LD~aLlr----pGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~--~~i~~l~~~~~g~s~adI~~ll 390 (480)
|+..|..+.=|..|-| -+--...+.|++++.++..+|++..+.......+ ..++-.|....+.|| |+..++
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaL 369 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKAL 369 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHH
Confidence 7788876654443321 1233478999999999999999999876544332 245566667777776 666554
No 249
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.24 E-value=3.5e-06 Score=95.49 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=122.2
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHh-hhhHHhhhCCCC-Cc-eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLK-AKHYYHRLGRVW-KR-SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~-~~~~~~~~g~~~-~r-giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
..|....++.|....-..+.+.+..+-+ .+..|...+... .. ..|++||||.|||+.++++|.++|+.++..|.+..
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 3555667787777777777766665521 111232222111 11 36999999999999999999999999999999988
Q ss_pred CChHHHHHHHHhh-------------------cC-CcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE
Q 011664 261 ADDADLKSLLLQT-------------------TS-KSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 261 ~~~~~l~~l~~~~-------------------~~-~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
.+...+...+... .. ..||++||+|.+.. .+...++++-..+. ...+-+|+
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--~dRg~v~~l~~l~~-------ks~~Piv~ 464 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--EDRGGVSKLSSLCK-------KSSRPLVC 464 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--hhhhhHHHHHHHHH-------hccCCeEE
Confidence 7665544433211 11 24999999998875 22222222222221 23455788
Q ss_pred ecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHHHH
Q 011664 321 TMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 321 tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
++|..+......+. |-..-++|+.|+.+....-+..++......+.. .++++.+ .+++||.+.+..
T Consensus 465 ~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~----~~~~DiR~~i~~ 531 (871)
T KOG1968|consen 465 TCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISK----LSGGDIRQIIMQ 531 (871)
T ss_pred EecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHH----hcccCHHHHHHH
Confidence 88866655543333 544689999999999888888887666555544 3455543 336677665543
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.3e-05 Score=80.35 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=80.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC----------------CcEEEEeCCC---cCChHHHHHHHHhh------cCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS----------------YDVYDVDLSR---VADDADLKSLLLQT------TSKS 277 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~----------------~~~~~i~~s~---~~~~~~l~~l~~~~------~~~s 277 (480)
.+..|||+||+|+||+.+|.++|..+- -+++.+.... ..+-..++.+.... ....
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 456899999999999999999998652 2354453221 22344555554332 2347
Q ss_pred EEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCC
Q 011664 278 VILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 278 II~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p 347 (480)
|++||++|.+. ....+.||..++.- +++.++|+.|+.++.|-|.+++ |+. .+.|+++
T Consensus 98 v~ii~~ad~mt-----~~AaNaLLK~LEEP-----p~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT-----LDAISAFLKVLEDP-----PQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred EEEEechhhcC-----HHHHHHHHHHhhcC-----CCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 99999999883 34457788888642 5678888899999999999999 985 6777754
No 251
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=2.7e-05 Score=82.77 Aligned_cols=175 Identities=22% Similarity=0.315 Sum_probs=99.9
Q ss_pred CcceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 176 GRWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 176 ~~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-|- ..-.|.+.++|+-+..-..++++.+..+.... .....+-+||+||+|||||+.++.+|.++|+.+..-
T Consensus 70 elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 3463 34468899999999888887777666221111 111245688999999999999999999999987654
Q ss_pred e-------CCCcCC---------hHHHHH---HHHh--------------hcCCcEEEEecccccccCcccccchhhhhh
Q 011664 256 D-------LSRVAD---------DADLKS---LLLQ--------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLN 302 (480)
Q Consensus 256 ~-------~s~~~~---------~~~l~~---l~~~--------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~ 302 (480)
. .+.+.. .+.+.. .+.. ...+.+|+|||+-..+... ....+.+.|.
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-~~~~f~evL~ 220 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-DSETFREVLR 220 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-hHHHHHHHHH
Confidence 3 111111 111111 1111 1246799999997765432 3334444444
Q ss_pred hcccccccccCCceEEEEe-cCCCccCcccccCC------CceeEEEEcCCCCHHHHHHHHHHHhccCC
Q 011664 303 FMDGVLNSCCFEERVMVFT-MNSKDHVDQALLRP------GRIDVHIHFPLCDFSSFKTLASSYLGLKD 364 (480)
Q Consensus 303 ~ldg~~~~~~~~~~ivI~t-TN~~~~LD~aLlrp------GRfd~~I~~~~p~~~~r~~il~~~l~~~~ 364 (480)
..-... .-..|||.| ++.++..++..+.| .|+ .+|.|.+-...-.++.++.++....
T Consensus 221 ~y~s~g----~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 221 LYVSIG----RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred HHHhcC----CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhc
Confidence 332111 112344443 22334444433322 255 3788887777777777777765443
No 252
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.22 E-value=3.7e-05 Score=76.50 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHc--CCC--c-EEEEeCCCcCCh------------------------HHHHHHHHh-
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASF--MSY--D-VYDVDLSRVADD------------------------ADLKSLLLQ- 272 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~--l~~--~-~~~i~~s~~~~~------------------------~~l~~l~~~- 272 (480)
..+-+.|+|++|+|||+||..+++. ... + ++.++++..... ..+...+.+
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4567889999999999999999976 322 2 344444332211 111122221
Q ss_pred -hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHH
Q 011664 273 -TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 273 -~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
...+++|+|||++... .+..+...+. . . ..+.-||+||.... +-...- .-...++++..+.++
T Consensus 98 L~~~~~LlVlDdv~~~~-------~~~~l~~~~~---~-~-~~~~kilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~e 161 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE-------DLEELREPLP---S-F-SSGSKILVTTRDRS-VAGSLG---GTDKVIELEPLSEEE 161 (287)
T ss_dssp HCCTSEEEEEEEE-SHH-------HH-------H---C-H-HSS-EEEEEESCGG-GGTTHH---SCEEEEECSS--HHH
T ss_pred hccccceeeeeeecccc-------cccccccccc---c-c-cccccccccccccc-cccccc---ccccccccccccccc
Confidence 1348999999998542 2222222221 1 1 22334566776432 211111 115789999999999
Q ss_pred HHHHHHHHhccCC----CCCchhHHHHHHhCCCCCHHHHHHH
Q 011664 352 FKTLASSYLGLKD----HKLFPQVEEIFQNGSSLSPAEIGEL 389 (480)
Q Consensus 352 r~~il~~~l~~~~----~~l~~~i~~l~~~~~g~s~adI~~l 389 (480)
-.+++..+..... ........++++.. |..|--|.-+
T Consensus 162 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPLal~~~ 202 (287)
T PF00931_consen 162 ALELFKKRAGRKESESPEDLEDLAKEIVEKC-GGLPLALKLI 202 (287)
T ss_dssp HHHHHHHHHTSHS----TTSCTHHHHHHHHT-TT-HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccc
Confidence 9999999876544 22334456777776 5556555443
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=5.2e-06 Score=74.43 Aligned_cols=63 Identities=27% Similarity=0.492 Sum_probs=42.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC-----------------------------hHHHH---HHHH
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD-----------------------------DADLK---SLLL 271 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~-----------------------------~~~l~---~l~~ 271 (480)
++++||||+|||+++.+++..+ +.+++.++...... ..... ..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 45666665432210 01111 1223
Q ss_pred hhcCCcEEEEeccccccc
Q 011664 272 QTTSKSVILIEDLDRFLV 289 (480)
Q Consensus 272 ~~~~~sII~IDEiD~l~~ 289 (480)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 445788999999998764
No 254
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.4e-05 Score=75.63 Aligned_cols=145 Identities=19% Similarity=0.278 Sum_probs=93.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC------------------------CcEEEEeCC-CcCChHHHHHHHHhh----
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS------------------------YDVYDVDLS-RVADDADLKSLLLQT---- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~------------------------~~~~~i~~s-~~~~~~~l~~l~~~~---- 273 (480)
.+.+|||+|| +||+++|.++|..+- .+++.+... ...+-.+++.+....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4568999996 689999999997542 134444332 122345566654332
Q ss_pred --cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHH
Q 011664 274 --TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 274 --~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
....|++||++|.+. ....+.||..++.- +.+.++|++|+.++.|-|.+++ |+ .+|.|+. +.+.
T Consensus 101 ~~~~~kV~II~~ad~m~-----~~AaNaLLKtLEEP-----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~ 166 (290)
T PRK07276 101 YEGKQQVFIIKDADKMH-----VNAANSLLKVIEEP-----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAY 166 (290)
T ss_pred ccCCcEEEEeehhhhcC-----HHHHHHHHHHhcCC-----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHH
Confidence 234799999999883 34457788888642 4567889999999999999999 99 4888876 5555
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHH
Q 011664 352 FKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 352 r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll 390 (480)
..+++.. .+ +..+..+++....| ++....++.
T Consensus 167 ~~~~L~~----~g--~~~~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 167 LIQLLEQ----KG--LLKTQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred HHHHHHH----cC--CChHHHHHHHHHCC-CHHHHHHHh
Confidence 4444432 22 22333344444445 676666665
No 255
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.14 E-value=5.1e-06 Score=78.67 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=60.2
Q ss_pred EEEEccCCCcHHHHHHHH-HHc---CCCcEEEEeCCCcC-----C---------------------hHHHHHHHHhhcCC
Q 011664 227 YLLYGPSGTGKSSFAAAM-ASF---MSYDVYDVDLSRVA-----D---------------------DADLKSLLLQTTSK 276 (480)
Q Consensus 227 iLL~GPpGTGKT~La~ai-A~~---l~~~~~~i~~s~~~-----~---------------------~~~l~~l~~~~~~~ 276 (480)
++++|.||+|||..|-.. ... -|.+++. ++..+. . ...+ .........
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 688999999999887655 332 2666554 443221 1 0011 111222368
Q ss_pred cEEEEecccccccCcccc-cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCC
Q 011664 277 SVILIEDLDRFLVEKPAA-VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~-~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p 347 (480)
++|+|||+...++.+... ....+.++.+.-.. ..+.-||++|.++..||+.+++ ..+.++++.-+
T Consensus 81 ~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp -EEEETTGGGTSB---T-T----HHHHGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred cEEEEECChhhcCCCccccccchHHHHHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999999877663 22333444442221 3466788999999999999987 88888877654
No 256
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.07 E-value=6e-06 Score=89.35 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=89.9
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe-------CCCc-C
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD-------LSRV-A 261 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~-------~s~~-~ 261 (480)
.|.|++++|+.+. +..|--..+.+...| ..-.-+|||+|-||||||.+.+.+++-+-...|.-. ++.. .
T Consensus 430 sIye~edvKkglL--LqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLL--LQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHH--HHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 5788889888876 333433333333333 111236999999999999999999997755444321 1100 0
Q ss_pred ChHHHHHHHHhh-----cCCcEEEEecccccccCcccccchhhhhhhcc---------cccccccCCceEEEEecCCC--
Q 011664 262 DDADLKSLLLQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD---------GVLNSCCFEERVMVFTMNSK-- 325 (480)
Q Consensus 262 ~~~~l~~l~~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld---------g~~~~~~~~~~ivI~tTN~~-- 325 (480)
.+.+-+++..+. ....|.+|||+|.+.. .+.+-|++.|+ |+.. .-+...-|+++.|..
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d-----StrSvLhEvMEQQTvSIAKAGII~-sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD-----STRSVLHEVMEQQTLSIAKAGIIA-SLNARCSVLAAANPIRS 581 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH-----HHHHHHHHHHHHhhhhHhhcceee-eccccceeeeeeccccc
Confidence 111222222221 3678999999999842 22244444443 3332 111222366677732
Q ss_pred ---------c--cCcccccCCCceeEE-EEcCCCCHHHHHHHHHH
Q 011664 326 ---------D--HVDQALLRPGRIDVH-IHFPLCDFSSFKTLASS 358 (480)
Q Consensus 326 ---------~--~LD~aLlrpGRfd~~-I~~~~p~~~~r~~il~~ 358 (480)
+ .|+|.|++ |||.+ +-+..||+..=+.|..+
T Consensus 582 kynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred cCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 1 26899999 99944 45667777643444443
No 257
>PHA02774 E1; Provisional
Probab=98.04 E-value=2.8e-05 Score=84.03 Aligned_cols=58 Identities=28% Similarity=0.458 Sum_probs=42.3
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEE-EeCCCcCChHHHHHHHHhhcCCcEEEEecc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYD-VDLSRVADDADLKSLLLQTTSKSVILIEDL 284 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~-i~~s~~~~~~~l~~l~~~~~~~sII~IDEi 284 (480)
|.|.+++++||||||||||+++.+|++.++..++. ++..+ . ..+.......|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----cccchhccCCEEEEecC
Confidence 45556789999999999999999999998655543 65421 1 11333445679999999
No 258
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=4.4e-05 Score=75.34 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCC----------------------cEEEEeCC-CcCChHHHHHHHHh---h---
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSY----------------------DVYDVDLS-RVADDADLKSLLLQ---T--- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~----------------------~~~~i~~s-~~~~~~~l~~l~~~---~--- 273 (480)
.+.++||+||+|+||..+|.++|..+-+ +++.+... .-.+-.+++.+... .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 5678999999999999999999975521 23333211 12233445554432 1
Q ss_pred -cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCC
Q 011664 274 -TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 274 -~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p 347 (480)
....|++|+++|.+. ....+.||..++. .+.+.++|++|+.++.+-|.+++ |+. .+.++.+
T Consensus 86 ~~~~KV~II~~ae~m~-----~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYGIEKLN-----KQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred cCCCEEEEeccHhhhC-----HHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 235799999999883 3445778888864 25678899999999999999999 985 5667766
No 259
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.01 E-value=2.1e-05 Score=74.95 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~ 259 (480)
|++...-++++||||||||+++..+|.. .+...++++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6677777899999999999999988854 367788888865
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.90 E-value=8.8e-06 Score=70.33 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=27.6
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
|++.|||||||||+|+.+|..+|+.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 261
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.90 E-value=3.8e-05 Score=84.37 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=82.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCC----CcCChHHHHHHHHh-----------hcCCcEEEEeccccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLS----RVADDADLKSLLLQ-----------TTSKSVILIEDLDRF 287 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s----~~~~~~~l~~l~~~-----------~~~~sII~IDEiD~l 287 (480)
.|+||-|++|||||+++++++..+.. +|..+..+ .+.+.-++...+.. .....|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999998754 77666543 24454445444422 123579999999976
Q ss_pred ccCcccccchhhhhhhccc---------ccccccCCceEEEEecCCC---ccCcccccCCCceeEEEEcCCCCHHH
Q 011664 288 LVEKPAAVSLSGVLNFMDG---------VLNSCCFEERVMVFTMNSK---DHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 288 ~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~~ivI~tTN~~---~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
...+++.|++.|+. ... ......++|+|-|.. ..|.++++. ||+.+|.+++|+..+
T Consensus 106 -----~~~~~~aLleame~G~vtIeR~G~s~-~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 -----EPGTAARLAAALDTGEVRLERDGLAL-RLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred -----CHHHHHHHHHHHhCCcEEEEECCcEE-ecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 34567888888752 111 112233455553322 458899999 999999999988654
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.89 E-value=1.8e-05 Score=85.61 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=50.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDL 257 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~ 257 (480)
.-.-|+++.|++++++.|.+.+...... ++ ..++-++|.||||+|||+||+++|+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3446999999999999999877554333 12 234578899999999999999999977 357777644
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=3.7e-05 Score=79.92 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=64.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC----C-CcEEEEeCCCcC----------------------ChHHHHHHHHhhcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM----S-YDVYDVDLSRVA----------------------DDADLKSLLLQTTSK 276 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l----~-~~~~~i~~s~~~----------------------~~~~l~~l~~~~~~~ 276 (480)
...++|.||+|+|||+++..+|..+ | ..+..+....+. ...++...+.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568899999999999999999753 3 345455443321 123344555666778
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE-ecCCCccCccccc
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF-TMNSKDHVDQALL 333 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~-tTN~~~~LD~aLl 333 (480)
.+|+||...... ....+.+.+..+.+... ...+++|+ +|+..+.++..+.
T Consensus 217 DlVLIDTaG~~~----~d~~l~e~La~L~~~~~---~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 217 HMVLIDTIGMSQ----RDRTVSDQIAMLHGADT---PVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CEEEEcCCCCCc----ccHHHHHHHHHHhccCC---CCeEEEEecCccChHHHHHHHH
Confidence 999999997432 22335556666654433 23445554 7777777765543
No 264
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.85 E-value=0.00017 Score=71.79 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=40.1
Q ss_pred eEEEEecCC------------CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHH
Q 011664 316 RVMVFTMNS------------KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEI 374 (480)
Q Consensus 316 ~ivI~tTN~------------~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l 374 (480)
.++|++||+ |.-++-.|+. |+ ..|...+++.++.++|++..+..++..+.++.-.+
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~ 385 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDL 385 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHH
Confidence 466777764 4556667777 77 57788888888899999988877776666655333
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.84 E-value=6.9e-05 Score=69.62 Aligned_cols=31 Identities=35% Similarity=0.329 Sum_probs=24.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
+|++||||||||+++..++.+. |.++.++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999886643 566666654
No 266
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.84 E-value=1e-05 Score=83.17 Aligned_cols=164 Identities=19% Similarity=0.165 Sum_probs=80.5
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC----Cc------
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS----RV------ 260 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s----~~------ 260 (480)
+|.|.+.+|..|.=.+..-...... ........-.+||.|.||||||.|.+.+++..-..++...-+ .+
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 4678888877765222111100000 000011223699999999999999998876654444332110 01
Q ss_pred ---CChHHHHH-HHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccccc--------CCceEEEEecCCCc--
Q 011664 261 ---ADDADLKS-LLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC--------FEERVMVFTMNSKD-- 326 (480)
Q Consensus 261 ---~~~~~l~~-l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~--------~~~~ivI~tTN~~~-- 326 (480)
.++..+.. .+. .....|++|||+|.+-. .....|+..|+.-.-... +-..-|++|+|...
T Consensus 104 d~~~~~~~leaGalv-lad~GiccIDe~dk~~~-----~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~ 177 (331)
T PF00493_consen 104 DPVTGEWVLEAGALV-LADGGICCIDEFDKMKE-----DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGR 177 (331)
T ss_dssp CGGTSSECEEE-HHH-HCTTSEEEECTTTT--C-----HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--
T ss_pred ccccceeEEeCCchh-cccCceeeecccccccc-----hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhh
Confidence 01111110 111 23678999999998732 224555666642110011 11234677877554
Q ss_pred -----------cCcccccCCCceeEEEEc-CCCCHHHHHHHHHHHhccC
Q 011664 327 -----------HVDQALLRPGRIDVHIHF-PLCDFSSFKTLASSYLGLK 363 (480)
Q Consensus 327 -----------~LD~aLlrpGRfd~~I~~-~~p~~~~r~~il~~~l~~~ 363 (480)
.++++|++ |||..+.+ ..|+.+.=..+.+..+...
T Consensus 178 ~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 178 YDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 47889999 99977665 5677666666777666543
No 267
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.83 E-value=2.9e-05 Score=83.67 Aligned_cols=190 Identities=18% Similarity=0.279 Sum_probs=111.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC--CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe-CCCcC----
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVW--KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD-LSRVA---- 261 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~--~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~-~s~~~---- 261 (480)
|..|.|++.+|.-|.= ..| -+-..+..-|.+. --++++.|-||||||-+.+++++.+-..+|... .+.-.
T Consensus 344 ~PsIyGhe~VK~GilL--~Lf-GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL--SLF-GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHH--HHh-CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 6678999999988762 222 1212222222222 226999999999999999999998876666542 11111
Q ss_pred ---ChHHHHHHHHhh-----cCCcEEEEecccccccCcccccchhhhhhhcc---------cccccccCCceEEEEecCC
Q 011664 262 ---DDADLKSLLLQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD---------GVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ---~~~~l~~l~~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld---------g~~~~~~~~~~ivI~tTN~ 324 (480)
.+++--....++ ....|.+|||+|.+-. ...-.++..|+ |+... -+...-|++|+|.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-----~dqvAihEAMEQQtISIaKAGv~aT-LnARtSIlAAANP 494 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-----KDQVAIHEAMEQQTISIAKAGVVAT-LNARTSILAAANP 494 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh-----HhHHHHHHHHHhheehheecceEEe-ecchhhhhhhcCC
Confidence 111100111111 3578999999998832 12234455553 22210 0111235667774
Q ss_pred C-----------c--cCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHH
Q 011664 325 K-----------D--HVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 325 ~-----------~--~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll 390 (480)
. + .+++++++ ||| ..|-+..|++..=..|.++.+..+.. +++-......|+-.++...+
T Consensus 495 v~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~-----i~~~~~~~~~~~~e~vrkYi 567 (764)
T KOG0480|consen 495 VGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRG-----IDDATERVCVYTLEQVRKYI 567 (764)
T ss_pred cCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcc-----ccccccccccccHHHHHHHH
Confidence 3 1 25889999 999 66788999998888888887754211 11111222477888888777
Q ss_pred HHhh
Q 011664 391 IANR 394 (480)
Q Consensus 391 ~~a~ 394 (480)
.-+|
T Consensus 568 ~yAR 571 (764)
T KOG0480|consen 568 RYAR 571 (764)
T ss_pred HHHH
Confidence 7665
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=2e-05 Score=72.13 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.+..++|+||||||||++++++|..++.++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888764
No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00013 Score=76.49 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------CCcEEEEeCCCcC-------
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-------SYDVYDVDLSRVA------- 261 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~~i~~s~~~------- 261 (480)
+.+++.+.+.+...+.....+ .....++.++|+||+|+||||.+..+|..+ +..+..+++....
T Consensus 148 ~~v~~~l~~~l~~~i~~~~~~--~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 148 DKVRDSVIIYIAKTIKCSGSI--IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred HHHHHHHHHHHHHHhhccCcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 445555555554444322111 112345678999999999999999999754 3444444433321
Q ss_pred ---------------ChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEE-ecCCC
Q 011664 262 ---------------DDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF-TMNSK 325 (480)
Q Consensus 262 ---------------~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~-tTN~~ 325 (480)
....+...+.+.....+|+||.+..... ....+.++...++.... ..++++|+ +|...
T Consensus 226 ~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~---~~e~~LVlsat~~~ 299 (388)
T PRK12723 226 QTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR---DAEFHLAVSSTTKT 299 (388)
T ss_pred HHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC---CCeEEEEEcCCCCH
Confidence 1233444455556778999999987632 12224455555543322 22455554 66666
Q ss_pred ccCcccc
Q 011664 326 DHVDQAL 332 (480)
Q Consensus 326 ~~LD~aL 332 (480)
..+...+
T Consensus 300 ~~~~~~~ 306 (388)
T PRK12723 300 SDVKEIF 306 (388)
T ss_pred HHHHHHH
Confidence 6665443
No 270
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.77 E-value=0.0001 Score=85.45 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCCCceEEEEccCCCcHHHH-HHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhh-------------cC----CcEEEEe
Q 011664 221 RVWKRSYLLYGPSGTGKSSF-AAAMASFMSYDVYDVDLSRVADDADLKSLLLQT-------------TS----KSVILIE 282 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~L-a~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~-------------~~----~sII~ID 282 (480)
+...|+|+++||||+|||+| .-++-+++-..++.++.+.-.....+-..+.+. +. .-|+|.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 44678999999999999985 458888999999999988655444333344332 11 2589999
Q ss_pred cccccccCcccccchhhhhh---hcccccccc-----cCCceEEEEecCCCccCc-----ccccCCCceeEEEEcCCCCH
Q 011664 283 DLDRFLVEKPAAVSLSGVLN---FMDGVLNSC-----CFEERVMVFTMNSKDHVD-----QALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 283 EiD~l~~~~~~~~~ls~lL~---~ldg~~~~~-----~~~~~ivI~tTN~~~~LD-----~aLlrpGRfd~~I~~~~p~~ 349 (480)
||..--.......+.--+|. .-+|+|+.. .-.+.++++++|.+.+.. ..++| | ...+++.+|..
T Consensus 1571 eInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~-~v~vf~~ype~ 1647 (3164)
T COG5245 1571 EINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K-PVFVFCCYPEL 1647 (3164)
T ss_pred ccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C-ceEEEecCcch
Confidence 99932222222223222332 235677631 123567778999876542 44554 3 26788999999
Q ss_pred HHHHHHHHHHhc
Q 011664 350 SSFKTLASSYLG 361 (480)
Q Consensus 350 ~~r~~il~~~l~ 361 (480)
.....|...++.
T Consensus 1648 ~SL~~Iyea~l~ 1659 (3164)
T COG5245 1648 ASLRNIYEAVLM 1659 (3164)
T ss_pred hhHHHHHHHHHH
Confidence 999888887764
No 271
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.73 E-value=0.00014 Score=69.67 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
|++...-++++||||||||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56666678999999999999999998654 5677777654
No 272
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.00038 Score=73.38 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc-CChHHHH---HHHHhhc--CCcEEEEecccccccCccc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV-ADDADLK---SLLLQTT--SKSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~-~~~~~l~---~l~~~~~--~~sII~IDEiD~l~~~~~~ 293 (480)
...++ -++++||-+||||++++.+...+...+++++..+. .....+. ..+.... ....||+|||+++
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v------ 106 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV------ 106 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc------
Confidence 33343 78999999999999999888877655555554443 3333332 2222222 4589999999987
Q ss_pred ccchhhhhhhcccccccccCCceEEEEecCCCccC-cccccCCCceeEEEEcCCCCHHHHHH-------------HHHHH
Q 011664 294 AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV-DQALLRPGRIDVHIHFPLCDFSSFKT-------------LASSY 359 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L-D~aLlrpGRfd~~I~~~~p~~~~r~~-------------il~~~ 359 (480)
.++...++.+... +...++|.++|..-.+ ..+-.=|||. ..+++.+.++.++.. .+..|
T Consensus 107 ----~~W~~~lk~l~d~--~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Y 179 (398)
T COG1373 107 ----PDWERALKYLYDR--GNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEKY 179 (398)
T ss_pred ----hhHHHHHHHHHcc--ccceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHHH
Confidence 2233344443331 1114666666644322 2222335795 688999999999864 57777
Q ss_pred hccC
Q 011664 360 LGLK 363 (480)
Q Consensus 360 l~~~ 363 (480)
+..-
T Consensus 180 l~~G 183 (398)
T COG1373 180 LETG 183 (398)
T ss_pred HHhC
Confidence 7543
No 273
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=5.8e-05 Score=70.12 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG 306 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg 306 (480)
+++.|+||+||||||+.++..++.+.+.+|.-.+... .......+++..+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------------------~~~~~~~~~~~~~~~ 54 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------------------WQERDDDDMIADISN 54 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------------------cccCCHHHHHHHHHH
Confidence 7899999999999999999999888776653221100 000011223333332
Q ss_pred ccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 307 ~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
+.. . +. .|+-.|....+-+..+. +.|.+|.+..|.......++++.+.
T Consensus 55 ~~~---~-~~-wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 55 FLL---K-HD-WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHh---C-CC-EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 222 2 23 34433433333234444 7899999999988888888888764
No 274
>PRK08118 topology modulation protein; Reviewed
Probab=97.68 E-value=8.6e-05 Score=68.74 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=62.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD 305 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld 305 (480)
.|++.||||+||||+|+.+++.++.+++.+|.--+. |.- . .. .......++..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~--------------~~w------~----~~-~~~~~~~~~~~~- 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK--------------PNW------E----GV-PKEEQITVQNEL- 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc--------------cCC------c----CC-CHHHHHHHHHHH-
Confidence 489999999999999999999999998888732110 000 0 00 000111122211
Q ss_pred cccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 306 GVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 306 g~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.. .++ .|+-.|.+..++..+ . +.|..|.+..|...-...++++.+.
T Consensus 57 --~~---~~~--wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 57 --VK---EDE--WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred --hc---CCC--EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 11 122 344555555565443 2 7899999999988887888888764
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.67 E-value=0.00016 Score=70.46 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=57.3
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC---------------------------------Ch
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA---------------------------------DD 263 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~---------------------------------~~ 263 (480)
|.+...-+++.||||||||+++..++..+ |....+++...-. +.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 46666779999999999999975554422 5566666532110 00
Q ss_pred ----HHHHHHHHh--hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 264 ----ADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 264 ----~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
..+..++.. ...|.+++||++-.......+......+++.+..+.. .+..+++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~----~g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS----LNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh----CCCEEEEEeccc
Confidence 111122222 1368999999998865322222233445555544433 234666666633
No 276
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.66 E-value=0.0027 Score=64.82 Aligned_cols=207 Identities=16% Similarity=0.213 Sum_probs=124.1
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEE
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVY 253 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~ 253 (480)
....++..+...|+.+++....-+.+.+....+ .- ..-.+|+.|..||||-.+|+|..... ..+|+
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~-------Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKL-------AM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHh-------hc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 345566777788999999887777666544433 11 12359999999999999999987654 67899
Q ss_pred EEeCCCcCChHHHHHHHHhh------------cCCcEEEEecccccccCcccccchhhhhhhc-ccccccccCC-----c
Q 011664 254 DVDLSRVADDADLKSLLLQT------------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFM-DGVLNSCCFE-----E 315 (480)
Q Consensus 254 ~i~~s~~~~~~~l~~l~~~~------------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~l-dg~~~~~~~~-----~ 315 (480)
.++|..+-.+..-.++|..+ ....-+|+|||..+.+ .....||.++ ||-..+...+ +
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp-----~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP-----RLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH-----HHHHHHHHHhcCCceeecCCcceEEEE
Confidence 99999887654445555433 3457889999987743 3345566666 3433211111 2
Q ss_pred eEEEEecCCC--c-----cCcccccCCCceeEEEEcCCCCHHHH----HHHHHHHhccCCCCCchhHHHHHHhCCCCCHH
Q 011664 316 RVMVFTMNSK--D-----HVDQALLRPGRIDVHIHFPLCDFSSF----KTLASSYLGLKDHKLFPQVEEIFQNGSSLSPA 384 (480)
Q Consensus 316 ~ivI~tTN~~--~-----~LD~aLlrpGRfd~~I~~~~p~~~~r----~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~a 384 (480)
+-||+||..+ + ..-+.|.- |+. +..+..|...+| .-+.+.++... -+++......+++.
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~-------s~elg~p~pkl~~~ 404 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQF-------SDELGVPRPKLAAD 404 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHH-------HHHhCCCCCccCHH
Confidence 4578888654 1 12233333 553 444444443333 22333332110 12222223456666
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHH
Q 011664 385 EIGELMIANRNSPSRALKSVITALQ 409 (480)
Q Consensus 385 dI~~ll~~a~~~~~~al~~~i~~~~ 409 (480)
-+..+....|...++.+++++-...
T Consensus 405 ~~~~L~~y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 405 LLTVLTRYAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Confidence 6666666678888888888764443
No 277
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.65 E-value=5e-05 Score=77.23 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCCcE-EEEeCCCc-----------CChHHHHHHHH-h-hcCCcEEEEeccccc
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSYDV-YDVDLSRV-----------ADDADLKSLLL-Q-TTSKSVILIEDLDRF 287 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~-~~i~~s~~-----------~~~~~l~~l~~-~-~~~~sII~IDEiD~l 287 (480)
.+++|+.||||-|+|||+|+-..-..+-.+- ..+-...+ .+.++.....+ + ..+-.||+|||+.--
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4678999999999999999999887663321 11111111 11111000111 1 124479999999732
Q ss_pred ccCcccccchhhhhhhcccccccccCCceEEEEecC-CCccC
Q 011664 288 LVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKDHV 328 (480)
Q Consensus 288 ~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~~L 328 (480)
+-.+...++.|++.|= .+++++|+|+| .|+.|
T Consensus 143 --DI~DAMiL~rL~~~Lf-------~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 143 --DIADAMILGRLLEALF-------ARGVVLVATSNTAPDNL 175 (367)
T ss_pred --ChHHHHHHHHHHHHHH-------HCCcEEEEeCCCChHHh
Confidence 3445566777777662 35788999999 55655
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.00011 Score=75.03 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=59.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC----------------------hHHHH--HHHHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD----------------------DADLK--SLLLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~----------------------~~~l~--~l~~~ 272 (480)
|++..+.++++||||||||+|+..++.+. |..+.+++...-.+ +..+. ..+.+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666678999999999999988765433 56677776533111 11111 11223
Q ss_pred hcCCcEEEEecccccccCcc------c------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 273 TTSKSVILIEDLDRFLVEKP------A------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~~~~------~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
...+.+|+||-+.++.+..+ + .+.+++++..|.+... ..+..+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~---~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS---KSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHH---hCCCEEEEEec
Confidence 35789999999998875311 0 1223445555555443 45566666543
No 279
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.63 E-value=0.00017 Score=70.13 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~ 257 (480)
|++....++++||||||||+++.+++.+ .|.+++++++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6777788999999999999999999754 3667776664
No 280
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00024 Score=69.34 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
=+-+.||+|||||||.+.||+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37789999999999999999855
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.61 E-value=9.5e-05 Score=65.04 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=42.0
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..|.|++-+++.|...+..++..+.- ..|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p------~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP------RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC------CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35889999999999999999866421 122344599999999999999999874
No 282
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.60 E-value=6.1e-05 Score=72.83 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
+.-+|+||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34599999999999999999974
No 283
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.59 E-value=5.1e-05 Score=83.91 Aligned_cols=161 Identities=20% Similarity=0.174 Sum_probs=85.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe-CCCcCC-----
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD-LSRVAD----- 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~-~s~~~~----- 262 (480)
-.|.|++++|+.|.= ..|--.++.....+ +.---++||.|-||||||.|.+.+++.+-..+|.-- .++-.+
T Consensus 286 PsIyG~e~VKkAilL--qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILL--QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHH--HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 467888888888752 22211111111100 001125899999999999999999987765555321 111111
Q ss_pred --hHHHHHHHHh-----hcCCcEEEEecccccccCcccccchhhhhhhcc---------cccccccCCceEEEEecCCCc
Q 011664 263 --DADLKSLLLQ-----TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD---------GVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 --~~~l~~l~~~-----~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld---------g~~~~~~~~~~ivI~tTN~~~ 326 (480)
+...-+...+ ...++|.+|||+|.+-. ...+.+...|+ |+.. .-+...-|++|+|.+.
T Consensus 364 ~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~-----~dr~aihEaMEQQtIsIaKAGI~a-tLnARcsvLAAaNP~~ 437 (682)
T COG1241 364 VRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE-----EDRVAIHEAMEQQTISIAKAGITA-TLNARCSVLAAANPKF 437 (682)
T ss_pred EEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh-----HHHHHHHHHHHhcEeeecccceee-ecchhhhhhhhhCCCC
Confidence 1100011111 14689999999998732 22234444443 1111 0011123566777553
Q ss_pred -------------cCcccccCCCceeEEEEc-CCCCHHHHHHHHHHHh
Q 011664 327 -------------HVDQALLRPGRIDVHIHF-PLCDFSSFKTLASSYL 360 (480)
Q Consensus 327 -------------~LD~aLlrpGRfd~~I~~-~~p~~~~r~~il~~~l 360 (480)
+|+++|++ |||..+-+ ..|+.+.=..++...+
T Consensus 438 Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 438 GRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred CcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 36789999 99965544 4566654344444433
No 284
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0012 Score=64.72 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=88.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCc-E--EEEeCCCcCC--------------------------hHHHHHHHHhhcCCc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYD-V--YDVDLSRVAD--------------------------DADLKSLLLQTTSKS 277 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~-~--~~i~~s~~~~--------------------------~~~l~~l~~~~~~~s 277 (480)
+.++|+-|||||.+.+|+...+.-+ + +.++-..+.. +..+..++.+-..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 5689999999999999887766432 2 2333222211 111222333445678
Q ss_pred EEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc--------cccCCCceeEEEEcCCCCH
Q 011664 278 VILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ--------ALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 278 II~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~--------aLlrpGRfd~~I~~~~p~~ 349 (480)
++++||.+.+.. ..+..+.-++.........-.++.|+ .| .|.+ .+.. |++..|++++.+.
T Consensus 134 ~l~vdEah~L~~-----~~le~Lrll~nl~~~~~~~l~ivL~G---qp-~L~~~lr~~~l~e~~~--R~~ir~~l~P~~~ 202 (269)
T COG3267 134 VLMVDEAHDLND-----SALEALRLLTNLEEDSSKLLSIVLIG---QP-KLRPRLRLPVLRELEQ--RIDIRIELPPLTE 202 (269)
T ss_pred EEeehhHhhhCh-----hHHHHHHHHHhhcccccCceeeeecC---Cc-ccchhhchHHHHhhhh--eEEEEEecCCcCh
Confidence 999999998742 22233222222222201112233333 11 2333 2334 8988899999999
Q ss_pred HHHHHHHHHHhccC--CCCCch--hHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 350 SSFKTLASSYLGLK--DHKLFP--QVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 350 ~~r~~il~~~l~~~--~~~l~~--~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
++-...++..++.. +.+++. -+..+.....| .|..|.++|..|..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~ 251 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALD 251 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHH
Confidence 97777777777643 223332 33455556656 68888888766544
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.57 E-value=4.2e-05 Score=67.88 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.2
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
++++||||||||++|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999944433
No 286
>PRK13947 shikimate kinase; Provisional
Probab=97.55 E-value=6.9e-05 Score=68.92 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=29.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|+|.|+||||||++++.+|+.+|.++++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998876
No 287
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.55 E-value=6.6e-05 Score=67.50 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=28.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|+|+||||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999988765
No 288
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.55 E-value=0.00017 Score=69.66 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.5
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
|++...-++++||||||||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666678999999999999999998643 7788888876
No 289
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.54 E-value=0.00031 Score=82.29 Aligned_cols=127 Identities=17% Similarity=0.294 Sum_probs=83.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-----------h--HH--H--HHHHHhhcCCcEEEEecccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-----------D--AD--L--KSLLLQTTSKSVILIEDLDR 286 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-----------~--~~--l--~~l~~~~~~~sII~IDEiD~ 286 (480)
.+++||-|.||.|||+|+.|+|+..|-..+.|++|+-.+ + .+ + ..++.......-+++||+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 467999999999999999999999999999999876432 1 01 0 12234456678899999984
Q ss_pred cccCcccccchhhhhhhcc-----------cccccccCCceEEEEecCCC------ccCcccccCCCceeEEEEcCCCCH
Q 011664 287 FLVEKPAAVSLSGVLNFMD-----------GVLNSCCFEERVMVFTMNSK------DHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 287 l~~~~~~~~~ls~lL~~ld-----------g~~~~~~~~~~ivI~tTN~~------~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
. ++..+.+|-..+| ...+ |..+-.|++|-|.. ..|+..++. ||. +|.+...+.
T Consensus 1623 a-----SQSVlEGLNacLDhR~eayIPEld~~f~--~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~d~lt~ 1692 (4600)
T COG5271 1623 A-----SQSVLEGLNACLDHRREAYIPELDKTFD--VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKMDGLTT 1692 (4600)
T ss_pred h-----HHHHHHHHHHHHhhccccccccccceee--ccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEeccccc
Confidence 3 2233344444443 2222 12233344444432 347888888 995 788888877
Q ss_pred HHHHHHHHHHh
Q 011664 350 SSFKTLASSYL 360 (480)
Q Consensus 350 ~~r~~il~~~l 360 (480)
+....|+....
T Consensus 1693 dDi~~Ia~~~y 1703 (4600)
T COG5271 1693 DDITHIANKMY 1703 (4600)
T ss_pred chHHHHHHhhC
Confidence 77666665544
No 290
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.53 E-value=0.00026 Score=68.07 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---C------CcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---S------YDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~------~~~~~i~~s~ 259 (480)
|++...-+.++||||+|||+++..+|... + ..+++++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56666778999999999999999998643 3 5667777644
No 291
>PRK03839 putative kinase; Provisional
Probab=97.52 E-value=6.9e-05 Score=69.74 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=27.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
|+|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 889999999999999999999999887754
No 292
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.50 E-value=0.00028 Score=70.36 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=72.6
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CC--cEE--EEeCCCcCCh
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SY--DVY--DVDLSRVADD 263 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~--~~~--~i~~s~~~~~ 263 (480)
.|.|+.-+++.|...+..++.++.- ..|-.+=|+|+|||||+..++.||+.+ |. +++ .+.-..+-.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 4789999999999999988776531 112234488999999999999999865 22 111 1111111112
Q ss_pred H-------HHHHHH---HhhcCCcEEEEecccccccCcccccchhhhhhhcccccc------cccCCceEEEEecCCCc
Q 011664 264 A-------DLKSLL---LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN------SCCFEERVMVFTMNSKD 326 (480)
Q Consensus 264 ~-------~l~~l~---~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~------~~~~~~~ivI~tTN~~~ 326 (480)
+ +++..+ .+..+.+|.++||+|.+- ++|+..+.++.. .....+-|+|+-+|.-.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 1 122222 223578999999999884 333333322211 01235668888887543
No 293
>PRK05973 replicative DNA helicase; Provisional
Probab=97.49 E-value=0.00057 Score=66.88 Aligned_cols=38 Identities=18% Similarity=-0.000 Sum_probs=28.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
|.++..-+++.|+||+|||+++-.+|.+. |.+++++++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 55566678999999999999998876543 666655553
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.48 E-value=0.00024 Score=72.53 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCCcCC---------------------hHHHHHH---HHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSRVAD---------------------DADLKSL---LLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~~~~---------------------~~~l~~l---~~~ 272 (480)
|++..+-+.+|||||||||+|+-.++.+ .|....+++...-.+ ..+.... +.+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5666667889999999999999987643 366777776533111 1111111 223
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+|+||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 35789999999998875
No 295
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.47 E-value=0.0033 Score=65.96 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred CcEEEEecccccccCcccccchhhhhhhcc-cccccccCCceEEEEecC--CCccCcccccCCCceeEEEEcCCCCHHHH
Q 011664 276 KSVILIEDLDRFLVEKPAAVSLSGVLNFMD-GVLNSCCFEERVMVFTMN--SKDHVDQALLRPGRIDVHIHFPLCDFSSF 352 (480)
Q Consensus 276 ~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-g~~~~~~~~~~ivI~tTN--~~~~LD~aLlrpGRfd~~I~~~~p~~~~r 352 (480)
..||+||.+..-... +..+-..|..+- .+.. .+-..||+.|++ ....|..|| |.|.-+.|.++.++.+.-
T Consensus 149 ~PVVVIdnF~~k~~~---~~~iy~~laeWAa~Lv~--~nIAHVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~A 221 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE---NDFIYDKLAEWAASLVQ--NNIAHVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESA 221 (431)
T ss_pred CCEEEEcchhccCcc---cchHHHHHHHHHHHHHh--cCccEEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHH
Confidence 369999998753211 222222222111 1111 122345555544 234567777 448778999999999998
Q ss_pred HHHHHHHhccCCC---------------------CCchhHHHHHHhCCCCCHHHHHHHHHH--hhhcHHHHHHHHHHHHH
Q 011664 353 KTLASSYLGLKDH---------------------KLFPQVEEIFQNGSSLSPAEIGELMIA--NRNSPSRALKSVITALQ 409 (480)
Q Consensus 353 ~~il~~~l~~~~~---------------------~l~~~i~~l~~~~~g~s~adI~~ll~~--a~~~~~~al~~~i~~~~ 409 (480)
+..+...|..... ....+++...... |---.||+.++++ ....|..|++++++.-.
T Consensus 222 k~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~L-GGRltDLe~lvrRiksGe~p~~Av~~iI~qsa 300 (431)
T PF10443_consen 222 KQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPL-GGRLTDLEFLVRRIKSGESPEEAVEEIISQSA 300 (431)
T ss_pred HHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHc-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8888888865311 1223444444433 6666788888876 34678888888886543
No 296
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.47 E-value=0.00042 Score=66.02 Aligned_cols=98 Identities=16% Similarity=0.290 Sum_probs=55.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHH-----cCCCcEE-------------EEeCCC-cC--------ChHHHHHHHHhhc--
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS-----FMSYDVY-------------DVDLSR-VA--------DDADLKSLLLQTT-- 274 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~-----~l~~~~~-------------~i~~s~-~~--------~~~~l~~l~~~~~-- 274 (480)
.+-++|.||+|+|||+++++++. ..|.++. .+...+ +. .-..+..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 35789999999999999999985 3344321 111100 00 0123556666666
Q ss_pred CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 275 SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 275 ~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
.|.++++||.-.-............+++.+ .. .+..+|++|..++.+
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l---~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFL---KN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHH---HH----CCCEEEEEcCcHHHH
Confidence 899999999754322111111123344443 11 245677777766544
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00047 Score=63.05 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
--+.+.||||+|||+++.-+|..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358999999999999999999766
No 298
>PRK00625 shikimate kinase; Provisional
Probab=97.46 E-value=0.0001 Score=68.77 Aligned_cols=31 Identities=39% Similarity=0.675 Sum_probs=29.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|+|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998886
No 299
>PRK13949 shikimate kinase; Provisional
Probab=97.46 E-value=0.0001 Score=68.41 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=29.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|+|.||||+|||++++.+|+.+++++++.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988876
No 300
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.00027 Score=68.12 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=55.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-----cCCCcEE-------EEe--CCCcCC-----------hHH---HHHHHHhhcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS-----FMSYDVY-------DVD--LSRVAD-----------DAD---LKSLLLQTTSK 276 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~-----~l~~~~~-------~i~--~s~~~~-----------~~~---l~~l~~~~~~~ 276 (480)
+.++|.||.|+|||++.+.++. ..|..+. ..+ .+.+.. ..+ +..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 2343221 110 111111 112 22333455789
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccc
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQAL 332 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aL 332 (480)
++++|||+..-............++..+ .. .......+|++|...+.+....
T Consensus 110 slvllDE~~~gtd~~~~~~~~~ail~~l---~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 110 SLVLIDEFGKGTDTEDGAGLLIATIEHL---LK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred cEEEeccccCCCCHHHHHHHHHHHHHHH---Hh-cCCCCcEEEEEcChHHHHHhhh
Confidence 9999999975432111112223344433 11 0012346777887666554443
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.45 E-value=0.00063 Score=68.35 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC----C-CcEEEEeCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM----S-YDVYDVDLSRV 260 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l----~-~~~~~i~~s~~ 260 (480)
++.++|.||+|+|||+++..+|..+ | ..+..+++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 4468899999999999999999765 3 67777776654
No 302
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.44 E-value=0.00031 Score=65.28 Aligned_cols=63 Identities=27% Similarity=0.399 Sum_probs=45.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH-----------------------HHHHHHHh-hcCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA-----------------------DLKSLLLQ-TTSKSVILI 281 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~-----------------------~l~~l~~~-~~~~sII~I 281 (480)
-+|+.||||||||++|..++..++.+++++......+++ ++..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 379999999999999999999988888888765544332 12233333 344678999
Q ss_pred ecccccc
Q 011664 282 EDLDRFL 288 (480)
Q Consensus 282 DEiD~l~ 288 (480)
|-+..+.
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 9887764
No 303
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.43 E-value=0.00081 Score=68.09 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=95.2
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHH-H--HcCCCcEEEEeCCCcCCh----
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAM-A--SFMSYDVYDVDLSRVADD---- 263 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~ai-A--~~l~~~~~~i~~s~~~~~---- 263 (480)
.+.|..+..+.+.+.+..-+-. | -..++++.||.|+|||.++... + .+.|.+++.+.+......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~-------g--EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH-------G--ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh-------c--CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4567777777777666544332 2 2357999999999999877643 3 377889988877643211
Q ss_pred -----------------------HHHHHHHHh------hc-CCcEEEEecccccccCcccccchhhhhhhcccccccccC
Q 011664 264 -----------------------ADLKSLLLQ------TT-SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCF 313 (480)
Q Consensus 264 -----------------------~~l~~l~~~------~~-~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~ 313 (480)
..+.+++.. .+ .+-|.++||+|.+++.. ...-+.|.+|-..+. .
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----rQtllYnlfDisqs~--r 169 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----RQTLLYNLFDISQSA--R 169 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----hhHHHHHHHHHHhhc--C
Confidence 111122211 11 23455567999886532 123466777766542 3
Q ss_pred CceEEEEecCCC---ccCcccccCCCcee-EEEEcCCC-CHHHHHHHHHHHhc
Q 011664 314 EERVMVFTMNSK---DHVDQALLRPGRID-VHIHFPLC-DFSSFKTLASSYLG 361 (480)
Q Consensus 314 ~~~ivI~tTN~~---~~LD~aLlrpGRfd-~~I~~~~p-~~~~r~~il~~~l~ 361 (480)
..+.||+.|.+- +.|.....+ ||. ++|+++++ ...+...+++..+.
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 456677755443 556778888 998 44776654 56888888888874
No 304
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.42 E-value=0.00029 Score=78.08 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
+|..|++++|++++++.+...+.. ++.++|+||||||||++++++|..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 578999999999998877754431 237999999999999999999998753
No 305
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.41 E-value=0.0004 Score=68.93 Aligned_cols=91 Identities=18% Similarity=0.379 Sum_probs=57.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeCC-Cc
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDLS-RV 260 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~s-~~ 260 (480)
.+.++++++-.+...+.+.+.+...++ ..+.+++.||+|||||++++++..++. ..++.+.-. ++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 455888988877766666655543322 256899999999999999999998773 445554311 11
Q ss_pred -------------CChHHHHHHHHhh--cCCcEEEEecccc
Q 011664 261 -------------ADDADLKSLLLQT--TSKSVILIEDLDR 286 (480)
Q Consensus 261 -------------~~~~~l~~l~~~~--~~~sII~IDEiD~ 286 (480)
.+...+.+++..+ ..|++|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 0122345555433 5799999999973
No 306
>PF14516 AAA_35: AAA-like domain
Probab=97.41 E-value=0.0045 Score=63.61 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=90.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC-----hHH------------------------------
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD-----DAD------------------------------ 265 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~-----~~~------------------------------ 265 (480)
..-+.++||..+|||++...+.+.+ |+..+.+|+..+.. ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3457899999999999999887654 78888888765432 000
Q ss_pred --HHH-----HHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccccc----CCc-eEEEEecCCCccCccccc
Q 011664 266 --LKS-----LLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC----FEE-RVMVFTMNSKDHVDQALL 333 (480)
Q Consensus 266 --l~~-----l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~----~~~-~ivI~tTN~~~~LD~aLl 333 (480)
... ++.+...|-||+|||||.++.... ...+|+..+......+. ... +++++.+..+......-.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~---~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~ 187 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ---IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQ 187 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc---hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCC
Confidence 000 112234678999999999975332 22344544433322110 011 233332222222211223
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 334 RPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 334 rpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
+|=-+...|.++.-+.++-..+++.|-.... ...++.+...+.| -|-=+..+|.
T Consensus 188 SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~~~~~~l~~~tgG-hP~Lv~~~~~ 241 (331)
T PF14516_consen 188 SPFNIGQPIELPDFTPEEVQELAQRYGLEFS---QEQLEQLMDWTGG-HPYLVQKACY 241 (331)
T ss_pred CCcccccceeCCCCCHHHHHHHHHhhhccCC---HHHHHHHHHHHCC-CHHHHHHHHH
Confidence 4444556788888899998888887732211 1235666666644 4544444443
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.00042 Score=67.03 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-+.|+||||||||+++..+|... +..+++++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56666678999999999999999997432 25677777654
No 308
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.00042 Score=69.19 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.++++.||||+|||++.+++++.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 48999999999999999999998743
No 309
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.00033 Score=74.84 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=48.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC--------------------hHHHHHHHH--hhc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD--------------------DADLKSLLL--QTT 274 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~--------------------~~~l~~l~~--~~~ 274 (480)
|++...-+||+||||+|||+|+..+|... +.++++++..+-.. +..+..++. +..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666678999999999999999998754 67788887543211 111222222 224
Q ss_pred CCcEEEEeccccccc
Q 011664 275 SKSVILIEDLDRFLV 289 (480)
Q Consensus 275 ~~sII~IDEiD~l~~ 289 (480)
.|.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 789999999998764
No 310
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00012 Score=67.89 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+.+.|.|++|+||||+.+++|+.++.+|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999999987
No 311
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.39 E-value=0.00031 Score=67.00 Aligned_cols=114 Identities=25% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSG 299 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~ 299 (480)
|......++|.|+.|+|||++++.|+.+ +..+......+.+. .......-|+.+||++.+. +.....+-.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~-----~~~d~~~~~~~kd~---~~~l~~~~iveldEl~~~~--k~~~~~lK~ 117 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE-----YFSDSINDFDDKDF---LEQLQGKWIVELDELDGLS--KKDVEALKS 117 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH-----hccCccccCCCcHH---HHHHHHhHheeHHHHhhcc--hhhHHHHHH
Confidence 5555667889999999999999999765 22221111122222 2233455799999999875 222223333
Q ss_pred hhhhc-ccccc------cccCCceEEEEecCCCccC-cccccCCCceeEEEEcCC
Q 011664 300 VLNFM-DGVLN------SCCFEERVMVFTMNSKDHV-DQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 300 lL~~l-dg~~~------~~~~~~~ivI~tTN~~~~L-D~aLlrpGRfd~~I~~~~ 346 (480)
++..- +.+.. .......++|+|||..+-| |+.=-| || ..|+++.
T Consensus 118 ~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 118 FITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred HhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 33221 11111 0112344678899987755 666667 88 4566554
No 312
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00043 Score=62.91 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=55.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc--EEEEeCCCc-----------------CChHHHHHH-HH--hhcCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD--VYDVDLSRV-----------------ADDADLKSL-LL--QTTSKSVILI 281 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~--~~~i~~s~~-----------------~~~~~l~~l-~~--~~~~~sII~I 281 (480)
..-+.|.||+|+|||+|++++++.+... -+.++...+ .+..+.+++ ++ -..+|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3468899999999999999999876432 122221110 111222222 22 2357999999
Q ss_pred ecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 282 EDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 282 DEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
||...-+.. .+...+.+.+..... . +..+|++|+.++.+.
T Consensus 105 DEp~~~lD~----~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGLDP----ASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCCCH----HHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 998864422 222333343333222 2 356677777665443
No 313
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.37 E-value=0.00016 Score=65.04 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
++|+||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776554
No 314
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.36 E-value=0.00059 Score=63.43 Aligned_cols=62 Identities=31% Similarity=0.382 Sum_probs=44.3
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh-----------------------HHHHHHHHhhcCCcEEEEec
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD-----------------------ADLKSLLLQTTSKSVILIED 283 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~-----------------------~~l~~l~~~~~~~sII~IDE 283 (480)
+|+.||||+|||++|..++...+.+.+++....-.+. .++.+.+.+...+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999888888888876543321 12333333323567899998
Q ss_pred ccccc
Q 011664 284 LDRFL 288 (480)
Q Consensus 284 iD~l~ 288 (480)
+..+.
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 87654
No 315
>PRK14532 adenylate kinase; Provisional
Probab=97.36 E-value=0.00017 Score=67.58 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.+++.||||||||++++.+|..+|+..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766554
No 316
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.35 E-value=0.0025 Score=66.97 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=45.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc----CCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhh
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF----MSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSG 299 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~----l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~ 299 (480)
..++++.||||||||+++.+++.+ .| ..+....+..+-. ...+.......+|+|||+..+.-.+. ...++.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgylp~~~~-~~~v~i 283 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATLKFAKP-KELIGI 283 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCCcCCch-HHHHHH
Confidence 347999999999999999998876 23 1111212111111 13334456789999999998543222 222344
Q ss_pred hhhhc
Q 011664 300 VLNFM 304 (480)
Q Consensus 300 lL~~l 304 (480)
|-+.|
T Consensus 284 mK~yM 288 (449)
T TIGR02688 284 LKNYM 288 (449)
T ss_pred HHHHH
Confidence 44545
No 317
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.35 E-value=0.00016 Score=67.19 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
+++.||||||||++++.+|..+|...+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999864444
No 318
>PRK13948 shikimate kinase; Provisional
Probab=97.34 E-value=0.00022 Score=67.08 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+++.++|.|++|||||++++.+|..++.+|++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 5678999999999999999999999999999876
No 319
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.33 E-value=0.00074 Score=70.41 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=53.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCC-Cc----------------CCh-HHHHHHHHh--hcCCcEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLS-RV----------------ADD-ADLKSLLLQ--TTSKSVI 279 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s-~~----------------~~~-~~l~~l~~~--~~~~sII 279 (480)
..+|++||+|+||||+++++.+++ +..++.+.-. ++ ..+ ..+...+.. ...|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 358999999999999999998876 2345555311 10 000 012222221 2489999
Q ss_pred EEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccC
Q 011664 280 LIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLR 334 (480)
Q Consensus 280 ~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlr 334 (480)
++.|+-.- .+...+++.. ..+.. ++||=|..+...++-|
T Consensus 230 ~vGEiRd~-------et~~~al~aa--------~TGH~-v~tTlHa~s~~~ai~R 268 (372)
T TIGR02525 230 GVGEIRDL-------ETFQAAVLAG--------QSGHF-CLGTLHVKSPGEAISR 268 (372)
T ss_pred eeCCCCCH-------HHHHHHHHHH--------hcCCc-EEEeeCCCCHHHHHHH
Confidence 99999732 2233334332 22344 5566566555556554
No 320
>PRK14531 adenylate kinase; Provisional
Probab=97.32 E-value=0.0002 Score=67.00 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+-++++||||+|||++++.+|..+|...++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4599999999999999999999998776554
No 321
>PRK06217 hypothetical protein; Validated
Probab=97.32 E-value=0.00019 Score=67.11 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-|+|.|+||+||||+++++|..++.++++.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877665
No 322
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.31 E-value=0.00018 Score=65.80 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
++|.||||||||++++.+++.++..++ +...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCcccc
Confidence 578999999999999999999986554 444443
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.30 E-value=0.0014 Score=69.74 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC
Q 011664 197 DLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR 259 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~ 259 (480)
.+.+.+.+.+...+.......... ..|..++++||||+|||+++..+|..+ |..+..+++..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 345556656655544322111111 246689999999999999999999866 55666665543
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.30 E-value=0.00058 Score=71.28 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=47.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC--------------------ChHHHHHHHH--hhc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA--------------------DDADLKSLLL--QTT 274 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~--------------------~~~~l~~l~~--~~~ 274 (480)
|+.+..-++++||||+|||+|+..+|..+ +.++++++..+-. .+..+..++. ...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56666678999999999999999998754 3567777654211 0111222222 234
Q ss_pred CCcEEEEeccccccc
Q 011664 275 SKSVILIEDLDRFLV 289 (480)
Q Consensus 275 ~~sII~IDEiD~l~~ 289 (480)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 789999999988753
No 325
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.30 E-value=0.00019 Score=63.74 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=28.0
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
|.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999988876
No 326
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.30 E-value=0.00096 Score=66.43 Aligned_cols=86 Identities=14% Similarity=0.273 Sum_probs=53.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEe------
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVD------ 256 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~------ 256 (480)
+.++++++..++..+.+.+.+.. ....+++.||+|+|||++++++..++. ..++.+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 35788888888777766543321 233588999999999999999987663 3455542
Q ss_pred CCCcC-----Ch--HHHHHHHHh--hcCCcEEEEeccc
Q 011664 257 LSRVA-----DD--ADLKSLLLQ--TTSKSVILIEDLD 285 (480)
Q Consensus 257 ~s~~~-----~~--~~l~~l~~~--~~~~sII~IDEiD 285 (480)
+..+. .+ ......+.. ...|.+|+++|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 11110 01 112233322 2589999999996
No 327
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.30 E-value=0.00079 Score=64.96 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~ 257 (480)
|++....+|+.||||||||+++..++.+. |.++++++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 67777889999999999999998776432 677777764
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.28 E-value=0.0013 Score=62.57 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=39.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCCh----------HHHHHHHHh-----------hcCCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADD----------ADLKSLLLQ-----------TTSKSVIL 280 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~----------~~l~~l~~~-----------~~~~sII~ 280 (480)
+-.++.||||||||+++++++..+ +..++.+..+.-... ..+..++.. .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 467889999999999999987644 667777766532111 112222211 12348999
Q ss_pred Eeccccc
Q 011664 281 IEDLDRF 287 (480)
Q Consensus 281 IDEiD~l 287 (480)
|||+-.+
T Consensus 99 VDEasmv 105 (196)
T PF13604_consen 99 VDEASMV 105 (196)
T ss_dssp ESSGGG-
T ss_pred Eeccccc
Confidence 9999876
No 329
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.28 E-value=0.0039 Score=63.19 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=47.5
Q ss_pred CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCccc----------------ccCCCce
Q 011664 275 SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQA----------------LLRPGRI 338 (480)
Q Consensus 275 ~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~a----------------LlrpGRf 338 (480)
.+-||+|||+|++.+ ...-++|+.+.-+.+ ..+.++|++.+.. .|..+ .+. =-+
T Consensus 172 ~~iViiIDdLDR~~~-----~~i~~~l~~ik~~~~---~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLe-Kii 241 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP-----EEIVELLEAIKLLLD---FPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLE-KII 241 (325)
T ss_pred ceEEEEEcchhcCCc-----HHHHHHHHHHHHhcC---CCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHH-hhc
Confidence 457999999998843 223455555544444 3567777776521 22111 122 045
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhc
Q 011664 339 DVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 339 d~~I~~~~p~~~~r~~il~~~l~ 361 (480)
+..+.+|.|+..+...++...+.
T Consensus 242 q~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 242 QVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHH
Confidence 68899999999888777776643
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.27 E-value=0.0063 Score=70.31 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=26.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
.+-++++||+|.|||+++...+...+ ++.-+++
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 34689999999999999999987776 6655554
No 331
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.26 E-value=0.00023 Score=66.59 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|++.||||+|||++++.+|..+|...+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999988766554
No 332
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00022 Score=64.26 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=33.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKS 268 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~ 268 (480)
..||+.|-||||||+++..+|...+...+.+ +++..+.++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l~~ 49 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNLYE 49 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcchh
Confidence 3699999999999999999999888776554 56655555433
No 333
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.23 E-value=0.0003 Score=65.37 Aligned_cols=34 Identities=38% Similarity=0.695 Sum_probs=30.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
++.++|.||+|+|||++++.+|+.++.+++..|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999888764
No 334
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.00026 Score=66.44 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=31.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
++.|+|.|+||||||++++.+|..+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4579999999999999999999999999998773
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0033 Score=66.79 Aligned_cols=63 Identities=30% Similarity=0.354 Sum_probs=42.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcC----------------------ChHHHHHHHHhhcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVA----------------------DDADLKSLLLQTTSK 276 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~----------------------~~~~l~~l~~~~~~~ 276 (480)
.+.++|.||+|+||||++..+|..+ +..+..+++.... ...++...+.+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4568899999999999999888643 4567777665432 122333344444567
Q ss_pred cEEEEecccc
Q 011664 277 SVILIEDLDR 286 (480)
Q Consensus 277 sII~IDEiD~ 286 (480)
.+|+||....
T Consensus 301 DlVlIDt~G~ 310 (424)
T PRK05703 301 DVILIDTAGR 310 (424)
T ss_pred CEEEEeCCCC
Confidence 8899998764
No 336
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.22 E-value=0.00065 Score=69.18 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 195 ETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 195 ~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.++.++.+.+.+...+.... ...+...|.|.|+||||||++++.+|..+|+++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 33444445544444333221 2345668999999999999999999999999999655
No 337
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.19 E-value=0.0015 Score=66.31 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=23.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
++++++.||+|+|||++++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 338
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.19 E-value=0.00034 Score=64.37 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.++|.|+||||||++++.+|..+|.++++.|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999998775
No 339
>PRK06762 hypothetical protein; Provisional
Probab=97.19 E-value=0.00041 Score=63.54 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+.-++++|+||||||++|+.++..++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 346889999999999999999999866666664
No 340
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.0011 Score=61.24 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=25.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC-CcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS-YDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~-~~~~~i~~ 257 (480)
-+.+.|+||+||||+|+.+|..++ ..++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 467889999999999999999885 45555543
No 341
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.17 E-value=0.00085 Score=66.72 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=55.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHH------cCCCcEEEEeCCCcCChHHHHHHHHhh-----------------cCCcEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMAS------FMSYDVYDVDLSRVADDADLKSLLLQT-----------------TSKSVI 279 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~------~l~~~~~~i~~s~~~~~~~l~~l~~~~-----------------~~~sII 279 (480)
....+||.||.|.|||.||+-|-. .+.-.|+.++|..+.++..+..+|... .....+
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 344699999999999999998863 567789999999999998888887431 345899
Q ss_pred EEeccccccc
Q 011664 280 LIEDLDRFLV 289 (480)
Q Consensus 280 ~IDEiD~l~~ 289 (480)
|+|||..+..
T Consensus 287 fldeigelga 296 (531)
T COG4650 287 FLDEIGELGA 296 (531)
T ss_pred ehHhhhhcCc
Confidence 9999988754
No 342
>PRK13764 ATPase; Provisional
Probab=97.17 E-value=0.0012 Score=72.62 Aligned_cols=26 Identities=42% Similarity=0.733 Sum_probs=23.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.+++|++|||||||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998774
No 343
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.17 E-value=0.001 Score=61.07 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc--EEEEe---CCCc---------------CChHHHHHH-HHh--hcCCcEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD--VYDVD---LSRV---------------ADDADLKSL-LLQ--TTSKSVI 279 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~--~~~i~---~s~~---------------~~~~~l~~l-~~~--~~~~sII 279 (480)
+..-+.|.||+|+|||+|.+.+++..... -+.++ .... .+..+.+++ +++ ..+|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 34468899999999999999999875321 11221 1111 111112222 222 3589999
Q ss_pred EEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 280 LIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 280 ~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
++||-..-+. ......+.+++..+ .. .+..+|++|.+++.+
T Consensus 105 llDEP~~~LD-~~~~~~l~~~l~~~---~~----~~~tiii~sh~~~~~ 145 (163)
T cd03216 105 ILDEPTAALT-PAEVERLFKVIRRL---RA----QGVAVIFISHRLDEV 145 (163)
T ss_pred EEECCCcCCC-HHHHHHHHHHHHHH---HH----CCCEEEEEeCCHHHH
Confidence 9999875432 22222333344333 21 245667777665543
No 344
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.16 E-value=0.00019 Score=66.25 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=33.8
Q ss_pred cccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCCCc
Q 011664 192 ISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLSRV 260 (480)
Q Consensus 192 i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s~~ 260 (480)
++|-++..+++...+. . .....++.++++||||+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~---------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A---------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G---------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H---------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3555666666654442 1 111234689999999999999999988766433 777776554
No 345
>PRK14530 adenylate kinase; Provisional
Probab=97.16 E-value=0.00038 Score=66.83 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=27.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.++|.||||+||||+++.+|..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999876654
No 346
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.15 E-value=0.00031 Score=65.21 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
+-++|.||||+|||+++++++..++..++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 468999999999999999999998877665543
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.14 E-value=0.0012 Score=61.71 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=39.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc--EEEEe-------CCC--cCChHHHHHHHHh--hcCCcEEEEecccccc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD--VYDVD-------LSR--VADDADLKSLLLQ--TTSKSVILIEDLDRFL 288 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~--~~~i~-------~s~--~~~~~~l~~l~~~--~~~~sII~IDEiD~l~ 288 (480)
..-+.|.||.|+|||||++.+++.+..+ -+.++ ... +.+...-+-.+++ ...|.++++||--.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3457899999999999999999865321 11111 111 2222222222232 3589999999987544
No 348
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.13 E-value=0.0018 Score=65.68 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=76.0
Q ss_pred ccccc-ChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe----CCCcCChH
Q 011664 190 DTISM-ETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD----LSRVADDA 264 (480)
Q Consensus 190 ~~i~g-~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~----~s~~~~~~ 264 (480)
+++.+ ++++++.+.+.+-..+... .+...-++|+|+.|+|||+++..+...+|-....+. +.++.+.
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~- 119 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH- 119 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC-
Confidence 44443 4456666666555444331 235667899999999999999999998876542222 2222110
Q ss_pred HHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccc---cccc-c------cCCceEEEEecCCCccC---ccc
Q 011664 265 DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG---VLNS-C------CFEERVMVFTMNSKDHV---DQA 331 (480)
Q Consensus 265 ~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg---~~~~-~------~~~~~ivI~tTN~~~~L---D~a 331 (480)
+..++.....-+++.||++.-. ... .+.+..|-| +... . -.....+|++||++-.+ |.+
T Consensus 120 --~f~~a~l~gk~l~~~~E~~~~~--~~~----~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a 191 (304)
T TIGR01613 120 --RFGLARLEGKRAVIGDEVQKGY--RDD----ESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGG 191 (304)
T ss_pred --CchhhhhcCCEEEEecCCCCCc--ccc----HHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChh
Confidence 1123344567899999987421 111 122222211 1100 0 01123467788865333 678
Q ss_pred ccCCCceeEEEEcC
Q 011664 332 LLRPGRIDVHIHFP 345 (480)
Q Consensus 332 LlrpGRfd~~I~~~ 345 (480)
+.| |+ ..|.|+
T Consensus 192 ~~R--R~-~vi~f~ 202 (304)
T TIGR01613 192 IKR--RL-RIIPFT 202 (304)
T ss_pred hee--eE-EEEecc
Confidence 999 88 577765
No 349
>PRK09354 recA recombinase A; Provisional
Probab=97.13 E-value=0.001 Score=68.65 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=46.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCCcCC---------------------hHHH---HHHHHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSRVAD---------------------DADL---KSLLLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~~~~---------------------~~~l---~~l~~~ 272 (480)
|++..+-+++|||||||||+|+-.++.+ .|...++++...-.+ ..+. ...+.+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5666667889999999999999876643 366677776543111 0111 111223
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 35789999999998875
No 350
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.11 E-value=0.0015 Score=60.39 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..+++.||+|||||+|.+++|+..
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 358999999999999999999855
No 351
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00039 Score=63.55 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=26.6
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+-+.|||||||||+++-+|..+|+++++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa 31 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA 31 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeec
Confidence 56889999999999999999999998873
No 352
>PRK06547 hypothetical protein; Provisional
Probab=97.09 E-value=0.00055 Score=63.75 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.+.-|++.||+|||||++++.+|..++..++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4557889999999999999999999988777654
No 353
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0019 Score=61.02 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=23.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC---CCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM---SYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l---~~~~~~i 255 (480)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999998887654 5555555
No 354
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.09 E-value=0.0019 Score=60.03 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.|.||+|+|||+|++++++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34568899999999999999999865
No 355
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.08 E-value=0.0016 Score=61.21 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=38.5
Q ss_pred EEEEccCCCcHHHHHHHHHH-----cCCCcE--------------EEEeCCCcCC---------hHHHHHHHHhhcCCcE
Q 011664 227 YLLYGPSGTGKSSFAAAMAS-----FMSYDV--------------YDVDLSRVAD---------DADLKSLLLQTTSKSV 278 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~-----~l~~~~--------------~~i~~s~~~~---------~~~l~~l~~~~~~~sI 278 (480)
++|.||.|+|||++.++++- ..|..+ ..+...+... -..+..++.....|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 233321 1111211111 1123344455568999
Q ss_pred EEEecccccc
Q 011664 279 ILIEDLDRFL 288 (480)
Q Consensus 279 I~IDEiD~l~ 288 (480)
+++||...-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999997543
No 356
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0034 Score=65.63 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 456666666666555443221 1124678999999999999999999866 4455555543
No 357
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.07 E-value=0.0012 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
+++++||+|+|||.++.+.+..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999998888777654
No 358
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.07 E-value=0.00049 Score=63.94 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=25.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-+++.||||+||||+++.+|..+|...+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 578999999999999999999988665543
No 359
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0017 Score=59.93 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.|.||+|+|||+|++++++.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44468899999999999999999875
No 360
>PRK02496 adk adenylate kinase; Provisional
Probab=97.05 E-value=0.00046 Score=64.45 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=26.2
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+++.||||+|||++++.+|..++...+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999998776654
No 361
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.00081 Score=54.04 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=22.3
Q ss_pred eEEEEccCCCcHH-HHHHHHHHcC------CCcEEEEeCC
Q 011664 226 SYLLYGPSGTGKS-SFAAAMASFM------SYDVYDVDLS 258 (480)
Q Consensus 226 giLL~GPpGTGKT-~La~aiA~~l------~~~~~~i~~s 258 (480)
-+++.|||||||| ++++.++... +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5556666554 4456666544
No 362
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0044 Score=70.55 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=81.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEeCCCcCC--------hHHHHHHHHh---hcCCcEEEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVDLSRVAD--------DADLKSLLLQ---TTSKSVILI 281 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~~s~~~~--------~~~l~~l~~~---~~~~sII~I 281 (480)
-+++-+|.|.||+|||.++.-+|+.. +..++.+++..+.. +..+..+... ....-||||
T Consensus 207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfi 286 (898)
T KOG1051|consen 207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFL 286 (898)
T ss_pred CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 34678999999999999999999754 34677888765442 3335555543 346789999
Q ss_pred ecccccccCcccc--cchhhhhhhcccccccccCCceEEEEe-cCCC----ccCcccccCCCceeEEEEcCCCCHHHHHH
Q 011664 282 EDLDRFLVEKPAA--VSLSGVLNFMDGVLNSCCFEERVMVFT-MNSK----DHVDQALLRPGRIDVHIHFPLCDFSSFKT 354 (480)
Q Consensus 282 DEiD~l~~~~~~~--~~ls~lL~~ldg~~~~~~~~~~ivI~t-TN~~----~~LD~aLlrpGRfd~~I~~~~p~~~~r~~ 354 (480)
||++.+.+..... .....+|..+ .. .++.-+|+| |+.- -.=||+|-| ||+ .+.++.|+.+.-..
T Consensus 287 gelh~lvg~g~~~~~~d~~nlLkp~---L~---rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 287 GELHWLVGSGSNYGAIDAANLLKPL---LA---RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred cceeeeecCCCcchHHHHHHhhHHH---Hh---cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhh
Confidence 9999998765441 1222233332 22 233556664 4421 123999999 998 67788888665444
Q ss_pred HHH
Q 011664 355 LAS 357 (480)
Q Consensus 355 il~ 357 (480)
++.
T Consensus 358 iL~ 360 (898)
T KOG1051|consen 358 ILP 360 (898)
T ss_pred hhh
Confidence 443
No 363
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.03 E-value=0.00064 Score=70.15 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+|+|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 58899999999999999998776443
No 364
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.0017 Score=62.73 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=40.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC--------CcEEEEeCCC-cCC---------------------hHHHHHHHHhhcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS--------YDVYDVDLSR-VAD---------------------DADLKSLLLQTTS 275 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~--------~~~~~i~~s~-~~~---------------------~~~l~~l~~~~~~ 275 (480)
+.|+.||||||||++.+-+|+.+. ..+.-+|-++ +.+ ..+......+...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 689999999999999999998653 3455555322 211 0111112234568
Q ss_pred CcEEEEeccccc
Q 011664 276 KSVILIEDLDRF 287 (480)
Q Consensus 276 ~sII~IDEiD~l 287 (480)
|.||++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999753
No 365
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.02 E-value=0.0023 Score=60.78 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=39.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-----cCCCc--------------EEEEeCCCcC----C-----hHHHHHHHHhhcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS-----FMSYD--------------VYDVDLSRVA----D-----DADLKSLLLQTTSK 276 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~-----~l~~~--------------~~~i~~s~~~----~-----~~~l~~l~~~~~~~ 276 (480)
.-++|.||.|+|||++.++++. ..|.. +..++..+-. + ...+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 4689999999999999999993 22321 1111111110 0 12233444556789
Q ss_pred cEEEEecccccc
Q 011664 277 SVILIEDLDRFL 288 (480)
Q Consensus 277 sII~IDEiD~l~ 288 (480)
.++++||.-.-.
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999997543
No 366
>PRK14528 adenylate kinase; Provisional
Probab=97.01 E-value=0.00059 Score=64.21 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=26.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.+++.||||+|||++++.+|..+|++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999998776554
No 367
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.01 E-value=0.002 Score=59.67 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=21.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||+|+|||+|++++++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458899999999999999999865
No 368
>PLN02200 adenylate kinase family protein
Probab=97.00 E-value=0.00072 Score=66.12 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=28.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
.+.-+++.||||||||++++.+|..+|.. .++.+++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl 77 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL 77 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence 34568899999999999999999999865 4555443
No 369
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.00 E-value=0.0015 Score=70.52 Aligned_cols=95 Identities=25% Similarity=0.294 Sum_probs=53.1
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC---CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC--CcC----
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVW---KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS--RVA---- 261 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~---~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s--~~~---- 261 (480)
+|.|+.++|..+.-.+ |---++ ..-|... --++||+|-||||||-+.+.++.-....++.-..+ .+.
T Consensus 450 sIyGh~~VK~AvAlaL--fGGv~k--n~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALAL--FGGVPK--NPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHH--hcCCcc--CCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEE
Confidence 4678888877765322 111110 0001111 12599999999999999999998776655543211 110
Q ss_pred --ChHHHHHHHHh-----hcCCcEEEEeccccccc
Q 011664 262 --DDADLKSLLLQ-----TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 262 --~~~~l~~l~~~-----~~~~sII~IDEiD~l~~ 289 (480)
.+.-.++...+ ...+.|.+|||+|.+-.
T Consensus 526 v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred EeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 00001111111 13678999999999854
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.00 E-value=0.00057 Score=66.65 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-++|.||||+||||+++.+|..+|+..++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999987666553
No 371
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.98 E-value=0.0019 Score=66.17 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccC------ccc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVE------KPA 293 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~------~~~ 293 (480)
+.|.+|.+|+-||-.||||++|+|+-+.+|-....|++.. ..+..-+.-+-..-.++++|+---... ..+
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKGq~~~~~~Lp~G~G 226 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPSDNKDLPPGQG 226 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--SSTTTTT----SH
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCCCcCCCCCCCCCCC
Confidence 3566788999999999999999999999998888888753 234444444556678888887532111 111
Q ss_pred ccchhhhhhhccccccc----ccC--CceE---EEEecCCCccCcccccCCCceeEEEEcCC
Q 011664 294 AVSLSGVLNFMDGVLNS----CCF--EERV---MVFTMNSKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 294 ~~~ls~lL~~ldg~~~~----~~~--~~~i---vI~tTN~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
-..+..|-..+||...- ... ...| -|+|+|. ..|+..+.- ||...+.|..
T Consensus 227 ~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 227 MNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp HHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE---
T ss_pred cccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--eeEeeEeccc
Confidence 12344455566664321 001 1123 3677774 357778887 9998888865
No 372
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.98 E-value=0.00062 Score=65.14 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.8
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+++.||||+|||++++.+|..+|+..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766654
No 373
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.97 E-value=0.0017 Score=67.19 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+++.|.||||||.||-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.96 E-value=0.0011 Score=52.09 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHHcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l 248 (480)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 375
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.95 E-value=0.002 Score=66.06 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=48.7
Q ss_pred Ccc-ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeCCCc
Q 011664 188 TFD-TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDLSRV 260 (480)
Q Consensus 188 ~~~-~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~s~~ 260 (480)
.|+ ++.|.++..+++.+.+...-++ +-.-++-++|.||+|+|||++++.+-+.+ .+++|.+..+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 355 8999999999888766544332 12345678899999999999999999877 347777754433
No 376
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0026 Score=61.52 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=33.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA 264 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~ 264 (480)
+.-|.+.|+||+||||+|+.|+..+ |.+++.+.+.++....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 4468899999999999999999988 6778887777765433
No 377
>PRK13695 putative NTPase; Provisional
Probab=96.94 E-value=0.0037 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l 248 (480)
++|.|+||+|||++++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 378
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.94 E-value=0.0031 Score=68.65 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=106.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC--CCcEEEEeCCCcCChHHHHHHHHh------------------hcCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM--SYDVYDVDLSRVADDADLKSLLLQ------------------TTSKSVILIE 282 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l--~~~~~~i~~s~~~~~~~l~~l~~~------------------~~~~sII~ID 282 (480)
+.-.+|+.|.|||||-.+++++.... .-+|+.++|..+...-.=.++|.. ......+|+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 34469999999999999999998765 457999999876542222233311 1234789999
Q ss_pred cccccccCcccccchhhhhhhcc-ccccccc----CCceEEEEecCCCccCcccccCCCcee---------EEEEcCCCC
Q 011664 283 DLDRFLVEKPAAVSLSGVLNFMD-GVLNSCC----FEERVMVFTMNSKDHVDQALLRPGRID---------VHIHFPLCD 348 (480)
Q Consensus 283 EiD~l~~~~~~~~~ls~lL~~ld-g~~~~~~----~~~~ivI~tTN~~~~LD~aLlrpGRfd---------~~I~~~~p~ 348 (480)
||..+. -...+.||..+. |...... .-.+-||.||+++= ..|.+-|||- ..|.+|+..
T Consensus 415 eIgd~p-----~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr 486 (606)
T COG3284 415 EIGDMP-----LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLR 486 (606)
T ss_pred Hhhhch-----HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchh
Confidence 998763 123466776653 2111111 11234677776531 2455666664 344444332
Q ss_pred H-HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 011664 349 F-SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQTD 411 (480)
Q Consensus 349 ~-~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~~~ 411 (480)
. .++..++.+++..++. ....++++-+..++...+...++.+..+++.+...
T Consensus 487 ~R~d~~~~l~~~~~~~~~-----------~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 487 ERSDRIPLLDRILKREND-----------WRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cccccHHHHHHHHHHccC-----------CCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 2 3355566666654432 12357777788888889999999999999988765
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.94 E-value=0.0054 Score=62.74 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhh-hHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 197 DLKNRVKSDLESFLKAK-HYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~-~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
.+++.+.+.+...+... ..+. .....+.-++|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45666666666665421 1111 122234568899999999999999999866 4455555543
No 380
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.94 E-value=0.0019 Score=61.31 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA 245 (480)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 381
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.93 E-value=0.0032 Score=61.13 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHH-c----CCCcE--------------EEEeCCC-cC-------C-hHHHHHHHHhhcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS-F----MSYDV--------------YDVDLSR-VA-------D-DADLKSLLLQTTS 275 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~-~----l~~~~--------------~~i~~s~-~~-------~-~~~l~~l~~~~~~ 275 (480)
.+-++|.||.|+|||++.+.++. . .|..+ ..+...+ +. . -.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 34689999999999999999987 2 23211 1111111 11 1 1235556677788
Q ss_pred CcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 276 KSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 276 ~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+++++|||+..=............+++.+ .. ..+..+|++|...+-
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l---~~---~~~~~~i~~TH~~~l 156 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYL---LE---EKKCLVLFVTHYPSL 156 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHH---Hh---ccCCeEEEEcccHHH
Confidence 99999999864221111111122344443 22 124567777776654
No 382
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.93 E-value=0.00073 Score=64.90 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|+++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998766554
No 383
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.92 E-value=0.00057 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHHcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l 248 (480)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 384
>PRK04040 adenylate kinase; Provisional
Probab=96.91 E-value=0.00091 Score=63.18 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC--CCcEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM--SYDVY 253 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l--~~~~~ 253 (480)
.-++++|+||||||++++.++..+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55553
No 385
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00059 Score=63.07 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=26.4
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+++.|.|||||||+++.++ ++|++.+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 9998887764
No 386
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.90 E-value=0.0022 Score=61.90 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
+-++|.||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999974
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=96.90 E-value=0.0051 Score=63.32 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhHHh---hh-CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 198 LKNRVKSDLESFLKAKHYYH---RL-GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 198 ~k~~l~e~l~~~l~~~~~~~---~~-g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+++.+.+.+...+.....+. .. ....+.-++|.||||+||||+++.+|..+ |..+..+++.
T Consensus 110 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 110 VKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred HHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45556666665554322111 11 11234578999999999999999998765 4555555544
No 388
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.016 Score=56.79 Aligned_cols=125 Identities=9% Similarity=0.088 Sum_probs=91.1
Q ss_pred CceEEEEccCC-CcHHHHHHHHHHcC---------CCcEEEEeCC-------CcCChHHHHHHHHhh------cCCcEEE
Q 011664 224 KRSYLLYGPSG-TGKSSFAAAMASFM---------SYDVYDVDLS-------RVADDADLKSLLLQT------TSKSVIL 280 (480)
Q Consensus 224 ~rgiLL~GPpG-TGKT~La~aiA~~l---------~~~~~~i~~s-------~~~~~~~l~~l~~~~------~~~sII~ 280 (480)
...||+.|..+ +||.-++.-++..+ +-+++.+... ...+-.++|++.... ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45799999998 99999988877644 2356666533 233455566654332 2457999
Q ss_pred EecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 281 IEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 281 IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
|+++|.+. ....+.||..++. .+.+.++|+.|..++.|-|.+++ |+ ..+.++.|+...-.++...++
T Consensus 95 I~~ae~mt-----~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 95 IYSAELMN-----LNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred EechHHhC-----HHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhc
Confidence 99999883 3445778888764 24567888888899999999999 99 489999999877777766665
Q ss_pred c
Q 011664 361 G 361 (480)
Q Consensus 361 ~ 361 (480)
.
T Consensus 162 ~ 162 (263)
T PRK06581 162 Q 162 (263)
T ss_pred c
Confidence 4
No 389
>PRK04182 cytidylate kinase; Provisional
Probab=96.87 E-value=0.00093 Score=61.53 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-|.|.|+||||||++++++|..+|++++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999988763
No 390
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.86 E-value=0.00091 Score=69.94 Aligned_cols=45 Identities=31% Similarity=0.585 Sum_probs=39.1
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.++++-...+.+++.|.+ ..+|+|+.||||.|||++|+|+|..+.
T Consensus 244 ~~ledY~L~dkl~eRL~e------------------raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEE------------------RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHh------------------hhcceEEecCCCCChhHHHHHHHHHHH
Confidence 478999999999988875 246999999999999999999998763
No 391
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.86 E-value=0.00064 Score=64.65 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=17.3
Q ss_pred EEEEccCCCcHHHHHHHHHHcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l 248 (480)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777766654
No 392
>PHA00350 putative assembly protein
Probab=96.85 E-value=0.0022 Score=67.16 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=60.5
Q ss_pred EEEEccCCCcHHHHHHH--HH--HcCCCcEEEEeCCCcCCh--------------------------HHHHHHHHhhcCC
Q 011664 227 YLLYGPSGTGKSSFAAA--MA--SFMSYDVYDVDLSRVADD--------------------------ADLKSLLLQTTSK 276 (480)
Q Consensus 227 iLL~GPpGTGKT~La~a--iA--~~l~~~~~~i~~s~~~~~--------------------------~~l~~l~~~~~~~ 276 (480)
++++|+||+|||.-|-. +- -..|..++. ++..+.-+ ..+...+.-....
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~g 82 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPRG 82 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCCC
Confidence 68899999999987765 32 233655543 43322111 0011111113466
Q ss_pred cEEEEecccccccCcccc------------------cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCce
Q 011664 277 SVILIEDLDRFLVEKPAA------------------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRI 338 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~------------------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRf 338 (480)
++|+|||+..+.+.+... .....+++.+.-- ...+.=||++|.++..||..++. +.
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H----RH~G~DIiliTQ~~~~Id~~iR~--lv 156 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH----RHYNWDIILLTPNIRKIHSDIRA--MI 156 (399)
T ss_pred CEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh----cccCceEEEEeCCHHHhhHHHHH--hh
Confidence 899999999998765431 0012233333211 12344478888889899988775 65
Q ss_pred eE
Q 011664 339 DV 340 (480)
Q Consensus 339 d~ 340 (480)
+.
T Consensus 157 E~ 158 (399)
T PHA00350 157 EM 158 (399)
T ss_pred hh
Confidence 54
No 393
>PRK14527 adenylate kinase; Provisional
Probab=96.84 E-value=0.00085 Score=63.15 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=26.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.-++++||||+|||++++.+|..++...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 34689999999999999999999988655443
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.83 E-value=0.0047 Score=63.85 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=39.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEeCC-Cc---------C----C--hHHHHHHHHh--hcCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVDLS-RV---------A----D--DADLKSLLLQ--TTSKSVILI 281 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~~s-~~---------~----~--~~~l~~l~~~--~~~~sII~I 281 (480)
...+++.||+|+||||+++++.+++. ..++.+.-. ++ . + ...+...+.. ...|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 34688999999999999999998664 234433200 00 0 0 1123333332 258999999
Q ss_pred eccc
Q 011664 282 EDLD 285 (480)
Q Consensus 282 DEiD 285 (480)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9995
No 395
>PRK01184 hypothetical protein; Provisional
Probab=96.82 E-value=0.001 Score=62.06 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-++|.||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788888877664
No 396
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.80 E-value=0.0034 Score=60.03 Aligned_cols=115 Identities=30% Similarity=0.376 Sum_probs=66.8
Q ss_pred hHHhhhC--CCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEE----------------------------------E
Q 011664 214 HYYHRLG--RVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVY----------------------------------D 254 (480)
Q Consensus 214 ~~~~~~g--~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~----------------------------------~ 254 (480)
+.-+++| +|.+.=+++.|+.|||||-|.+.++.-+ |..+. .
T Consensus 16 elDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~ 95 (235)
T COG2874 16 ELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFP 95 (235)
T ss_pred HHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEE
Confidence 3444554 5666567889999999999999998421 23332 3
Q ss_pred EeCCCcCChHH-----HHHHH--HhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 255 VDLSRVADDAD-----LKSLL--LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 255 i~~s~~~~~~~-----l~~l~--~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+++..+..+.. +..++ .+.....||+||-+..+.... +. .+.+++|..+.. .|..+++||+|. ||..
T Consensus 96 ~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-~~---~~vl~fm~~~r~-l~d~gKvIilTv-hp~~ 169 (235)
T COG2874 96 VNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-SE---DAVLNFMTFLRK-LSDLGKVIILTV-HPSA 169 (235)
T ss_pred ecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-cH---HHHHHHHHHHHH-HHhCCCEEEEEe-Chhh
Confidence 33222222111 22222 233467899999999876432 22 334444443333 334677777665 5778
Q ss_pred CcccccC
Q 011664 328 VDQALLR 334 (480)
Q Consensus 328 LD~aLlr 334 (480)
++++++-
T Consensus 170 l~e~~~~ 176 (235)
T COG2874 170 LDEDVLT 176 (235)
T ss_pred cCHHHHH
Confidence 8887765
No 397
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.79 E-value=0.0008 Score=60.77 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.3
Q ss_pred EEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 229 LYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 229 L~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
|.||||+|||++++.||...|...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999998765444
No 398
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.78 E-value=0.0012 Score=60.32 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.++|+||+|||++++.+|+.+|++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887664
No 399
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.78 E-value=0.0024 Score=61.19 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999973
No 400
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.78 E-value=0.031 Score=56.98 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=48.0
Q ss_pred CCcEEEEecccccccCccc-----c------cc-hhhhhhhcccccccccCCceEE--EEecC---CCc--cCcccccCC
Q 011664 275 SKSVILIEDLDRFLVEKPA-----A------VS-LSGVLNFMDGVLNSCCFEERVM--VFTMN---SKD--HVDQALLRP 335 (480)
Q Consensus 275 ~~sII~IDEiD~l~~~~~~-----~------~~-ls~lL~~ldg~~~~~~~~~~iv--I~tTN---~~~--~LD~aLlrp 335 (480)
-|.++.||++.+++....- . -+ ...|+..+.|-.+ - .++.++ +.+|. .+. .++.+|...
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~-~-~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~ 233 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRD-F-KNGAVVTALAATSVSNAPKSPTLPVALGGK 233 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccc-c-CCCeEEEEEeccccccccCCccchhhhccc
Confidence 4778899999998864210 0 11 2334555443332 1 234443 44432 333 456666531
Q ss_pred Cce---e----------------EEEEcCCCCHHHHHHHHHHHhcc
Q 011664 336 GRI---D----------------VHIHFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 336 GRf---d----------------~~I~~~~p~~~~r~~il~~~l~~ 362 (480)
.-+ | ..|+++..+.++.+.+++.|...
T Consensus 234 ~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 234 EGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred cCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 111 1 16788899999998888888653
No 401
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.78 E-value=0.004 Score=64.28 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---------CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---------MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---------l~~~~~~i~~s~ 259 (480)
|++...-+.++||||||||.|+..+|-. .+..+++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 5666666789999999999999988631 134677777643
No 402
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.0038 Score=56.20 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc---EE-----EEe-CCCcCChHHHHHH-HHh--hcCCcEEEEecccccc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD---VY-----DVD-LSRVADDADLKSL-LLQ--TTSKSVILIEDLDRFL 288 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~-----~i~-~s~~~~~~~l~~l-~~~--~~~~sII~IDEiD~l~ 288 (480)
....+.+.||+|+|||+|++++++..... ++ .+. +.++. ..+.+++ +++ ..+|.++++||-..-+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 34468899999999999999999976321 10 111 11122 2232222 232 3689999999987544
No 403
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.78 E-value=0.0013 Score=66.21 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-CCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-SYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i 255 (480)
.-+++.|||||||||+|+.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 458899999999999999999998 5544443
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.77 E-value=0.0021 Score=58.92 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=52.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc---------------CCCcEEEEe----C--CCcCC-hHH---HHHHHHhhc--CCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF---------------MSYDVYDVD----L--SRVAD-DAD---LKSLLLQTT--SKS 277 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~---------------l~~~~~~i~----~--s~~~~-~~~---l~~l~~~~~--~~s 277 (480)
+-.++.||.|+|||++.++++-. .+......+ . ..+.+ ..+ +...+.... .|+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999999998632 233222222 1 11221 222 333344333 789
Q ss_pred EEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 278 VILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 278 II~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
++++||...-...... ..+...+.. ... . +..+|++|..++..
T Consensus 102 llllDEp~~gld~~~~-~~l~~~l~~---~~~---~-~~~vii~TH~~~~~ 144 (162)
T cd03227 102 LYILDEIDRGLDPRDG-QALAEAILE---HLV---K-GAQVIVITHLPELA 144 (162)
T ss_pred EEEEeCCCCCCCHHHH-HHHHHHHHH---HHh---c-CCEEEEEcCCHHHH
Confidence 9999999865432221 122222222 111 1 34677778766543
No 405
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.77 E-value=0.004 Score=66.40 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCce-EEEEccCCCcHHHHHHHHHHcCCCc---EEEEe-----
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRS-YLLYGPSGTGKSSFAAAMASFMSYD---VYDVD----- 256 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rg-iLL~GPpGTGKT~La~aiA~~l~~~---~~~i~----- 256 (480)
..+|+++++.+...+.+.+.+. .|.| +|+.||.|+|||+..-++-++++.+ ++.+.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4578999999988888776554 2345 5677999999999999999888543 44332
Q ss_pred -CCCcC--------C---hHHHHHHHHhhcCCcEEEEeccc
Q 011664 257 -LSRVA--------D---DADLKSLLLQTTSKSVILIEDLD 285 (480)
Q Consensus 257 -~s~~~--------~---~~~l~~l~~~~~~~sII~IDEiD 285 (480)
.+.+. + ...++.++ .+.|.||++.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~L--RqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAIL--RQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHh--ccCCCeEEEeccC
Confidence 11111 0 12233333 2589999999996
No 406
>PTZ00035 Rad51 protein; Provisional
Probab=96.76 E-value=0.0046 Score=63.78 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-+.++||||||||+++..+|... +..+++++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 56666667899999999999999887422 34566776543
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.76 E-value=0.0049 Score=63.11 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+.++|+.||+|+|||++++|++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 408
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.75 E-value=0.0011 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
|.|.|+||||||||+++++.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 76655
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0077 Score=63.57 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhh-hHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCC
Q 011664 197 DLKNRVKSDLESFLKAK-HYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSR 259 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~-~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~ 259 (480)
++.+.+.+.+...+.-. ..+...|...+.-+++.||+|+||||++..+|... |..+..+++..
T Consensus 195 ~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 195 NVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred HHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 45555555555544321 11222222234458899999999999999999643 44555555443
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.74 E-value=0.0038 Score=66.89 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=47.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC--------------------hHHHHHHHH--hhc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD--------------------DADLKSLLL--QTT 274 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~--------------------~~~l~~l~~--~~~ 274 (480)
|++...-+|++|+||+|||+|+..+|..+ +.++++++..+-.. +..+..+.. ...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666678999999999999999987754 45677776532210 111222221 234
Q ss_pred CCcEEEEeccccccc
Q 011664 275 SKSVILIEDLDRFLV 289 (480)
Q Consensus 275 ~~sII~IDEiD~l~~ 289 (480)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 789999999988754
No 411
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.72 E-value=0.0078 Score=65.08 Aligned_cols=86 Identities=17% Similarity=0.342 Sum_probs=54.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCce-EEEEccCCCcHHHHHHHHHHcCC---CcEEEEe----
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRS-YLLYGPSGTGKSSFAAAMASFMS---YDVYDVD---- 256 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rg-iLL~GPpGTGKT~La~aiA~~l~---~~~~~i~---- 256 (480)
.+.++++++..++..+.+...+. .+.| ++++||+|+|||++..++.+++. .+++.+.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 34588999888887777665332 2334 68999999999999998887764 3455542
Q ss_pred --CCCcC-----Ch--HHHHHHHHh--hcCCcEEEEeccc
Q 011664 257 --LSRVA-----DD--ADLKSLLLQ--TTSKSVILIEDLD 285 (480)
Q Consensus 257 --~s~~~-----~~--~~l~~l~~~--~~~~sII~IDEiD 285 (480)
+..+. .. ......+.. ...|.||++.||-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11110 00 111122211 2589999999996
No 412
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0014 Score=61.52 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS 258 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s 258 (480)
.+++.||||+||||+|+.+|+. +++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHh
Confidence 4899999999999999999999 445555543
No 413
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.72 E-value=0.0068 Score=62.01 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
++++++.||+|+|||+++++++.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999863
No 414
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0035 Score=62.78 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=43.0
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCce-EEEEccCCCcHHHHHHHHHHcCCC----c
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRS-YLLYGPSGTGKSSFAAAMASFMSY----D 251 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rg-iLL~GPpGTGKT~La~aiA~~l~~----~ 251 (480)
..+.+|. ...+|+.++..+-+.+ +.+ .++| ||..||.|||||+..+||-++++. +
T Consensus 97 vlR~Ip~-~i~~~e~LglP~i~~~-~~~------------------~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~H 156 (353)
T COG2805 97 VLRLIPS-KIPTLEELGLPPIVRE-LAE------------------SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKH 156 (353)
T ss_pred EEeccCc-cCCCHHHcCCCHHHHH-HHh------------------CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcc
Confidence 5677784 4558999988876665 321 3445 567799999999999999988754 4
Q ss_pred EEEE
Q 011664 252 VYDV 255 (480)
Q Consensus 252 ~~~i 255 (480)
++.+
T Consensus 157 IlTI 160 (353)
T COG2805 157 ILTI 160 (353)
T ss_pred eEEe
Confidence 5555
No 415
>PRK14526 adenylate kinase; Provisional
Probab=96.70 E-value=0.0014 Score=63.10 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=24.8
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
++|.||||||||++++.+|..++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998866544
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.0041 Score=58.15 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHH
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
...-+.|.||+|+|||||.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 344578999999999999999974
No 417
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.70 E-value=0.011 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-+.+.||+|+|||||++++++.++.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999998753
No 418
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.70 E-value=0.0051 Score=58.53 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=24.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
|+-++|.||+|+||||.+.-+|..+ +..+.-+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 4568999999999999999998755 444444443
No 419
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.69 E-value=0.0015 Score=61.26 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
-+.|.||+|+||||+++.++..++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 58899999999999999999988776544
No 420
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.68 E-value=0.0019 Score=57.61 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
...-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34468899999999999999999999854
No 421
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.67 E-value=0.0048 Score=65.47 Aligned_cols=166 Identities=18% Similarity=0.124 Sum_probs=90.1
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC--CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe-CCCcCC--hHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVW--KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD-LSRVAD--DAD 265 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~--~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~-~s~~~~--~~~ 265 (480)
.|.|++++|+.+.-.+.- .+..-..-|.+. .-+|+|.|-||..||-|.+.|.+-.-...|.-. .|+-.+ .+-
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 688999999988744431 211111112222 225899999999999999999987766665542 111111 000
Q ss_pred HHHH------HH-h---hcCCcEEEEecccccccCcccccchhhhhhhc------ccccccccCCceEEEEecCCC----
Q 011664 266 LKSL------LL-Q---TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFM------DGVLNSCCFEERVMVFTMNSK---- 325 (480)
Q Consensus 266 l~~l------~~-~---~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~l------dg~~~~~~~~~~ivI~tTN~~---- 325 (480)
++.- +. . .....|.+|||+|.+....... .-+...+- .|+.. .-+...-|++|.|..
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA--IHEVMEQQTISIaKAGI~T-tLNAR~sILaAANPayGRY 496 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA--IHEVMEQQTISIAKAGINT-TLNARTSILAAANPAYGRY 496 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH--HHHHHHhhhhhhhhhcccc-chhhhHHhhhhcCcccccc
Confidence 1100 00 0 1356799999999986432111 11111100 12211 001112355565532
Q ss_pred ---------ccCcccccCCCceeEEE-EcCCCCHHHHHHHHHHHhccCC
Q 011664 326 ---------DHVDQALLRPGRIDVHI-HFPLCDFSSFKTLASSYLGLKD 364 (480)
Q Consensus 326 ---------~~LD~aLlrpGRfd~~I-~~~~p~~~~r~~il~~~l~~~~ 364 (480)
=.|++||++ |||... -...|+.+.=..++++..-.+.
T Consensus 497 nprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~ 543 (721)
T KOG0482|consen 497 NPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQ 543 (721)
T ss_pred CcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhc
Confidence 137899999 999544 4457888777777777654443
No 422
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0017 Score=58.77 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
++++|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999987 66666654
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.65 E-value=0.0057 Score=60.40 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
..-+++.||+|||||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346899999999999999999998754
No 424
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.64 E-value=0.016 Score=56.75 Aligned_cols=123 Identities=18% Similarity=0.325 Sum_probs=71.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc---EEEEeCC---------------CcCChHHHH-----------HHHHhh-
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD---VYDVDLS---------------RVADDADLK-----------SLLLQT- 273 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~---~~~i~~s---------------~~~~~~~l~-----------~l~~~~- 273 (480)
+-.+.+.||+|||||+++..+-..+... ++.+... .+....++. +...+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4468999999999999999988766432 2222110 000111111 111101
Q ss_pred ----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCH
Q 011664 274 ----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 274 ----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
..+.+|++||+.. ....+..+.++++. |- --+.-+|+.+...-.|++.++. =++..+-++ -+.
T Consensus 93 ~~k~~~~~LiIlDD~~~---~~~k~~~l~~~~~~--gR-----H~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~ 159 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGD---KKLKSKILRQFFNN--GR-----HYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSK 159 (241)
T ss_pred ccCCCCCeEEEEeCCCC---chhhhHHHHHHHhc--cc-----ccceEEEEEeeecccCCHHHhh--cceEEEEec-CcH
Confidence 2368999999753 11112234444431 11 2345677788888899999877 777777675 466
Q ss_pred HHHHHHHHHH
Q 011664 350 SSFKTLASSY 359 (480)
Q Consensus 350 ~~r~~il~~~ 359 (480)
.....|++.+
T Consensus 160 ~dl~~i~~~~ 169 (241)
T PF04665_consen 160 RDLENIYRNM 169 (241)
T ss_pred HHHHHHHHhc
Confidence 6666666655
No 425
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.63 E-value=0.0042 Score=56.68 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.7
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSS-FAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~-La~aiA~~l 248 (480)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 426
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.63 E-value=0.0047 Score=54.33 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
...-++|+|+=|+|||+++++++..+|..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999998764
No 427
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.62 E-value=0.0035 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.|.||+|+|||+|++.+++..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999876
No 428
>PLN02199 shikimate kinase
Probab=96.62 E-value=0.0034 Score=63.21 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=30.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.+.|+|.|++|||||++++.+|+.+|++|++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 458999999999999999999999999999887
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0074 Score=55.82 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=21.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||+|+|||+|++.+|+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 430
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.60 E-value=0.0032 Score=65.77 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-.+++||||+|||+|++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 378899999999999999998664
No 431
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.59 E-value=0.0027 Score=62.82 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~ 259 (480)
|.+..+.+|++|+||||||+++..++... |.++++++..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 57777889999999999999999887643 77888887754
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.58 E-value=0.0023 Score=63.42 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s 258 (480)
|++....++++||||||||+++..+|.. .|.++.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6667778999999999999999987653 36788888875
No 433
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.58 E-value=0.0019 Score=61.77 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=26.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
-++++||+|||||.++-++|+..|.+++..|-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 47899999999999999999999999999984
No 434
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.0069 Score=65.55 Aligned_cols=65 Identities=25% Similarity=0.258 Sum_probs=43.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcC----------------------ChHHHHHHHHhhcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVA----------------------DDADLKSLLLQTTS 275 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~----------------------~~~~l~~l~~~~~~ 275 (480)
+.+.+.|.||+|+|||+++..+|..+ +..+..++..... ....+...+.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34578899999999999999998743 2344444432211 12345555555667
Q ss_pred CcEEEEeccccc
Q 011664 276 KSVILIEDLDRF 287 (480)
Q Consensus 276 ~sII~IDEiD~l 287 (480)
..+|+||.....
T Consensus 429 ~DLVLIDTaG~s 440 (559)
T PRK12727 429 YKLVLIDTAGMG 440 (559)
T ss_pred CCEEEecCCCcc
Confidence 789999988754
No 435
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.56 E-value=0.0032 Score=68.94 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHH
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
+...+|+.||+|||||+|.||||+
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444699999999999999999997
No 436
>PF13479 AAA_24: AAA domain
Probab=96.55 E-value=0.0045 Score=59.51 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=35.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC--C-------------CcCChHHHHHHHHh----hcCCcEEEEecccc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL--S-------------RVADDADLKSLLLQ----TTSKSVILIEDLDR 286 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~--s-------------~~~~~~~l~~l~~~----~~~~sII~IDEiD~ 286 (480)
.++||||||+|||+++..+- +.+.+++ + .+.+-.++...+.. ...-..|+||-++.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~-----k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLP-----KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred EEEEECCCCCCHHHHHHhCC-----CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 58999999999999999882 2222222 1 01123344444422 24568999998876
Q ss_pred c
Q 011664 287 F 287 (480)
Q Consensus 287 l 287 (480)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 5
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.54 E-value=0.0076 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+-+.||+|||||||...++.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47799999999999999998644
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0085 Score=57.54 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
.-+.+.||+|||||||.+++..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3588999999999999999986
No 439
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.53 E-value=0.0031 Score=61.61 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~ 259 (480)
|.+....+|++||||||||+++..++.+ -|.+.+++++.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777788999999999999999876643 367788887643
No 440
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.53 E-value=0.0022 Score=63.04 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
|+|+|+||+|||++|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999877 456666653
No 441
>PLN02674 adenylate kinase
Probab=96.53 E-value=0.0024 Score=62.83 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
...++|.||||+||||+++.+|..++...+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3469999999999999999999998854443
No 442
>PRK10436 hypothetical protein; Provisional
Probab=96.51 E-value=0.013 Score=62.91 Aligned_cols=94 Identities=16% Similarity=0.311 Sum_probs=57.6
Q ss_pred ceeCCCCC-CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEE
Q 011664 178 WRSVPFTH-PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVY 253 (480)
Q Consensus 178 w~~v~~~~-~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~ 253 (480)
++-++... +.++++++..+...+.+.+.+.. +..-+|+.||+|+||||+..++-+++. .+++
T Consensus 185 lRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~ 250 (462)
T PRK10436 185 LRLLQQVQQALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINIC 250 (462)
T ss_pred EEEeccccCCCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEE
Confidence 44444332 35889999888877776654321 233578999999999999988776663 3455
Q ss_pred EEe------CCCcC-----C--hHHHHHHHHh--hcCCcEEEEeccc
Q 011664 254 DVD------LSRVA-----D--DADLKSLLLQ--TTSKSVILIEDLD 285 (480)
Q Consensus 254 ~i~------~s~~~-----~--~~~l~~l~~~--~~~~sII~IDEiD 285 (480)
.+. +..+. . .......+.. ...|.||+|.||-
T Consensus 251 TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 251 SVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred EecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 543 11110 0 1112223322 2589999999986
No 443
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.51 E-value=0.0028 Score=60.35 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
+.-+++.|+||+|||++++.+|..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988654
No 444
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.49 E-value=0.0058 Score=61.07 Aligned_cols=62 Identities=15% Similarity=0.325 Sum_probs=34.0
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC-------cC---ChHHHHHHH----Hhh-cCCcEEEEecccccc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR-------VA---DDADLKSLL----LQT-TSKSVILIEDLDRFL 288 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~-------~~---~~~~l~~l~----~~~-~~~sII~IDEiD~l~ 288 (480)
++|+|.||+|||++|+.|+..+ +..+..++-.. +. .+...+..+ .+. ....||++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999864 56666665221 11 133344333 222 456899999988763
No 445
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0022 Score=58.31 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=35.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHH
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSL 269 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l 269 (480)
+.+-.+++-|++|||||+++++++.+++.+|++-| ++...+++.++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD--d~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD--DLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccc--cCCCHHHHHHH
Confidence 34557889999999999999999999998887653 55555555443
No 446
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0032 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999999875
No 447
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=96.45 E-value=0.00054 Score=52.89 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=32.8
Q ss_pred ccCCCCCCCC-----CCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC-cccccccc
Q 011664 425 DKSGSKKSTD-----ADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS-FDLAAAEN 478 (480)
Q Consensus 425 ~~~~~~~~~~-----~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~-~~~~~~~~ 478 (480)
.+|.++++++ .++ +.+.+..++|+++||++| |+++||||| .|+..||+
T Consensus 3 ~PCs~~dp~a~~m~~~di-~~~~l~~p~it~~DF~~A-----l~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 3 TPCSPSDPGAVEMSLMDI-PAEKLKEPPITMEDFEEA-----LKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp EEESSSSTTEEEEEGTGS--GGGB-HHHBCHHHHHHH-----HHTCGGSS-HHHHHHHHH
T ss_pred cCCCCCCccchhccHhhc-CcccccCCCCCHHHHHHH-----HHHcCCCCCHHHHHHHHH
Confidence 3455555543 233 344566678999999999 999999999 67777664
No 448
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.44 E-value=0.042 Score=55.34 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA 245 (480)
-.++|||.|||||.|.+.+-
T Consensus 89 I~~VYGPTG~GKSqLlRNLi 108 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLI 108 (369)
T ss_pred EEEEECCCCCCHHHHHHHhh
Confidence 45789999999999999874
No 449
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.44 E-value=0.0065 Score=58.19 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=18.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998644
No 450
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.43 E-value=0.0077 Score=61.14 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=36.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCCcCChHHHHHHH
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSRVADDADLKSLL 270 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~~~~~~~l~~l~ 270 (480)
|++...-++++||||||||+++..+|... +-..++++...-.....+.+..
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 56666678899999999999999888652 2367888876533344444443
No 451
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.42 E-value=0.014 Score=64.35 Aligned_cols=94 Identities=15% Similarity=0.279 Sum_probs=57.6
Q ss_pred ceeCCCCC-CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEE
Q 011664 178 WRSVPFTH-PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVY 253 (480)
Q Consensus 178 w~~v~~~~-~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~ 253 (480)
++-++... ..++++++..++..+.+.+.+.. ....+|++||+|+||||+..++.++++ .+++
T Consensus 283 lRll~~~~~~~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~ 348 (564)
T TIGR02538 283 LRILDSSAAQLDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIS 348 (564)
T ss_pred EEeecCccccCCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEE
Confidence 44444332 35789999988877777654432 233578999999999999988887764 3454
Q ss_pred EEe------CCCcC-----Ch--HHHHHHHHh--hcCCcEEEEeccc
Q 011664 254 DVD------LSRVA-----DD--ADLKSLLLQ--TTSKSVILIEDLD 285 (480)
Q Consensus 254 ~i~------~s~~~-----~~--~~l~~l~~~--~~~~sII~IDEiD 285 (480)
.+. +..+. .. ......+.. ...|.||++.||-
T Consensus 349 tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 349 TAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred EecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 432 11110 00 112223322 2589999999997
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.02 Score=60.70 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..-+.|.||+|+||||+++.+|..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999875
No 453
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.42 E-value=0.017 Score=61.23 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhh-HHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc
Q 011664 197 DLKNRVKSDLESFLKAKH-YYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV 260 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~-~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~ 260 (480)
.+++.+.+.+...+.... .+. .....+.-++|.||+|+||||++..+|..+ |..+.-+++...
T Consensus 73 ~v~~~v~~~L~~~l~~~~~~~~-~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 73 MIQHAVFKELCNLVDPGVEAFT-PKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred HHHHHHHHHHHHHhCCCCcccc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 345555665655553211 111 111235678999999999999999999766 666766666443
No 454
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.41 E-value=0.004 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=19.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-.+++||||+|||+++..+|..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999888643
No 455
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.39 E-value=0.0034 Score=58.59 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
|.|+|+||+|||++++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 787776655
No 456
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0041 Score=57.54 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=26.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
..-+.|.|+||+|||++++++|..+ +.++..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3468899999999999999999877 444555654
No 457
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.37 E-value=0.0091 Score=67.53 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHH---cCCCcEEEEeCCCcCC---------------------hHHHHHHH---Hh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMAS---FMSYDVYDVDLSRVAD---------------------DADLKSLL---LQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~---~l~~~~~~i~~s~~~~---------------------~~~l~~l~---~~ 272 (480)
|++..+.++++||||||||+|+..++. ..|..+.+++...-.. .+...... .+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 566667789999999999999965443 3356666766443111 11111111 22
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+|+||-|..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 34689999999998875
No 458
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.37 E-value=0.014 Score=57.11 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=52.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-----cCCCcE--------------EEEeCC-CcC-C-------hHHHHHHHHhhcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS-----FMSYDV--------------YDVDLS-RVA-D-------DADLKSLLLQTTSK 276 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~-----~l~~~~--------------~~i~~s-~~~-~-------~~~l~~l~~~~~~~ 276 (480)
+.++|.||..+|||++.+++|- .+|..+ ..+... ++. + -..+..++......
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 5789999999999999999985 334311 111111 111 1 12355667777889
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
++|+|||+-.=....++......+++.+.. ..+..+++||+..+-
T Consensus 124 sLvliDE~g~gT~~~eg~ai~~aile~l~~------~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 124 SLVLIDELGRGTNPEEGIAIAIAILEYLLE------KSGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEEESTTTTSSHHHHHHHHHHHHHHHHH------TTT-EEEEEES-GGG
T ss_pred eeeecccccCCCChhHHHHHHHHHHHHHHH------hccccEEEEeccchh
Confidence 999999998432211111222334444421 123456778876543
No 459
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.35 E-value=0.0028 Score=60.12 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeCCCcC
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDLSRVA 261 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~s~~~ 261 (480)
..|.-+++.|+||+|||+++..+...+ +.+++.++...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 356789999999999999999999988 7788888876654
No 460
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.35 E-value=0.0045 Score=58.98 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC-CcEEEEeCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS-YDVYDVDLSRV 260 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~-~~~~~i~~s~~ 260 (480)
+.-+.+.||+|||||||+++|+..++ ..+..++...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 34578999999999999999999883 34555555443
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.34 E-value=0.0028 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-+++.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998754
No 462
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.0097 Score=59.54 Aligned_cols=63 Identities=22% Similarity=0.158 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhh-hHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc
Q 011664 197 DLKNRVKSDLESFLKAK-HYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV 260 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~-~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~ 260 (480)
.+.+.+.+.+...+... ..+.. ....++-++|.||||+|||+++..+|..+ |..+.-+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~-~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIV-EENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcc-cCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 34555556665554332 11211 12235678899999999999999998765 556666665543
No 463
>PRK14529 adenylate kinase; Provisional
Probab=96.33 E-value=0.0026 Score=61.79 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.3
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
++|.||||+|||++++.+|..++...++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 8899999999999999999999876653
No 464
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.33 E-value=0.0062 Score=56.87 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD 263 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~ 263 (480)
-+.+.||+|+|||++++++++.++.. .++...+...
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~~~ 40 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLHPA 40 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccCCH
Confidence 47899999999999999999998874 3444444333
No 465
>PRK12338 hypothetical protein; Provisional
Probab=96.32 E-value=0.0036 Score=63.77 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
|.-+++.|+||||||++|+++|..+|...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 457899999999999999999999987643
No 466
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.013 Score=58.41 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=47.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh----HHHHHHHHhh---cCCcEEEEeccc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD----ADLKSLLLQT---TSKSVILIEDLD 285 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~----~~l~~l~~~~---~~~sII~IDEiD 285 (480)
+....||.|.+||||+++++..|.-.++.++.+..+.-.+- .+++.++.++ ..|.+++|+|-+
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 34579999999999999999999999999999988764443 3466666444 367888888854
No 467
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.28 E-value=0.0085 Score=62.81 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+++.||||||||+|++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3589999999999999999999764
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.27 E-value=0.011 Score=64.25 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=28.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc-C---CCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF-M---SYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~-l---~~~~~~i~~ 257 (480)
|.+...-+|++|+||||||+|+..++.+ + |.+++++++
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 5667778999999999999999977642 2 555655543
No 469
>PLN02459 probable adenylate kinase
Probab=96.26 E-value=0.0044 Score=61.45 Aligned_cols=30 Identities=17% Similarity=0.483 Sum_probs=25.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.++|.||||+|||++++.+|..+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 488899999999999999999988655443
No 470
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.26 E-value=0.01 Score=60.57 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCCcCChHHHHHH
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSRVADDADLKSL 269 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~~~~~~~l~~l 269 (480)
|++...-++++||||||||.++..+|... +..+++++...-.....+.+.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 56666778899999999999999988642 346788887653333444433
No 471
>PTZ00202 tuzin; Provisional
Probab=96.24 E-value=0.018 Score=61.05 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS 258 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s 258 (480)
-|....+..|-+.....+...+.. .....++-+.|.||+|||||++++.++..++...+.+|+.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 455677888988888888765542 2223345678999999999999999999999888888876
No 472
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.013 Score=61.16 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD 262 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~ 262 (480)
.++-++|.||+|+|||+++..+|..+ +..+..+++.....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 35568899999999999999999755 55666676655543
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.23 E-value=0.0092 Score=60.72 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
....+++.||+|+|||++++++++.+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 456899999999999999999998763
No 474
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.23 E-value=0.01 Score=59.98 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=26.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.|--+++.||+|||||++|..+|..++.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45579999999999999999999999877
No 475
>PLN02165 adenylate isopentenyltransferase
Probab=96.23 E-value=0.0042 Score=63.59 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLS 258 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s 258 (480)
.-+.|.||+|+|||+|+.++|..++..++..|--
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3588999999999999999999999877776543
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.22 E-value=0.033 Score=57.59 Aligned_cols=128 Identities=21% Similarity=0.332 Sum_probs=74.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC----------------------h------HHHHHHHHhh-
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD----------------------D------ADLKSLLLQT- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~----------------------~------~~l~~l~~~~- 273 (480)
.|..+.|||-.|||||.+++++-+.++.+...+++-+... + .+...+|.+.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 4556799999999999999999999988877776432211 0 1112223331
Q ss_pred --c---CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEe-cCCCccCcccccCCCcee-EEEEcCC
Q 011664 274 --T---SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT-MNSKDHVDQALLRPGRID-VHIHFPL 346 (480)
Q Consensus 274 --~---~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t-TN~~~~LD~aLlrpGRfd-~~I~~~~ 346 (480)
. ..-.|++|.+|.+.. -+...+..|+..- .+.. .....||+. +-.+. .-+.+-|-++ ..++||.
T Consensus 109 ~~t~~d~~~~liLDnad~lrD--~~a~ll~~l~~L~-el~~---~~~i~iils~~~~e~---~y~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRD--MDAILLQCLFRLY-ELLN---EPTIVIILSAPSCEK---QYLINTGTLEIVVLHFPQ 179 (438)
T ss_pred HhhccCceEEEEEcCHHhhhc--cchHHHHHHHHHH-HHhC---CCceEEEEeccccHH---HhhcccCCCCceEEecCC
Confidence 1 246889999998842 2222233333221 1111 223333332 22221 1222334554 6889999
Q ss_pred CCHHHHHHHHHHH
Q 011664 347 CDFSSFKTLASSY 359 (480)
Q Consensus 347 p~~~~r~~il~~~ 359 (480)
|+.++-++|+.+-
T Consensus 180 Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 180 YSVEETQVILSRD 192 (438)
T ss_pred CCHHHHHHHHhcC
Confidence 9999988887653
No 477
>PRK04328 hypothetical protein; Provisional
Probab=96.22 E-value=0.0059 Score=60.18 Aligned_cols=40 Identities=33% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~ 259 (480)
|.+....+|++||||||||+|+..++.+ -|.+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 5777778999999999999999876643 367788887654
No 478
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.21 E-value=0.0045 Score=57.94 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=27.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA 261 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~ 261 (480)
+.+.|+||||||++++.++..+ +.++..+++.++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 6789999999999999999987 4556666655443
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.21 E-value=0.0048 Score=57.89 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=23.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...+++.||+|+|||++++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45799999999999999999998763
No 480
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.025 Score=63.88 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=41.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC----C-CcEEEEeCCCcC----------------------ChHHHHHHHHhhcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM----S-YDVYDVDLSRVA----------------------DDADLKSLLLQTTSK 276 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l----~-~~~~~i~~s~~~----------------------~~~~l~~l~~~~~~~ 276 (480)
++-++|.||.|+||||++..+|..+ | ..+..++..... +..++...+.+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3468899999999999999999755 2 244444332221 233345555555666
Q ss_pred cEEEEeccccc
Q 011664 277 SVILIEDLDRF 287 (480)
Q Consensus 277 sII~IDEiD~l 287 (480)
.+|+||=....
T Consensus 265 D~VLIDTAGRs 275 (767)
T PRK14723 265 HLVLIDTVGMS 275 (767)
T ss_pred CEEEEeCCCCC
Confidence 88888876644
No 481
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.19 E-value=0.0044 Score=58.56 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=24.2
Q ss_pred EEEEccCCCcHHHHHHHHHHcC-CCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM-SYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l-~~~~~~i~ 256 (480)
|.+.|+||||||++|+.++..+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5688999999999999999998 45444443
No 482
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.19 E-value=0.016 Score=63.98 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 221 RVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+++..-+.+.||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445569999999999999999999866
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.19 E-value=0.0067 Score=58.54 Aligned_cols=39 Identities=26% Similarity=0.146 Sum_probs=30.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s 258 (480)
|.+....++++||||||||+++..++.+ -+...++++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5666778999999999999999987643 25566677653
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.18 E-value=0.0037 Score=57.86 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-++|.||+|+|||++++.+++....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997654
No 485
>PRK10646 ADP-binding protein; Provisional
Probab=96.18 E-value=0.021 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-++|.|+=|+|||++++++++.+|.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999999875
No 486
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.17 E-value=0.0069 Score=58.82 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~ 259 (480)
|+++..-++|.||||+|||+++..+|... +.+++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 66666778999999999999998887643 78888888754
No 487
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.17 E-value=0.012 Score=62.72 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=28.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCc-EEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYD-VYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~-~~~i~ 256 (480)
.|.-++++|+||||||+++..+|..++.. ++..|
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD 288 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTD 288 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehh
Confidence 46788999999999999999999999985 44444
No 488
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.16 E-value=0.0097 Score=61.86 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-.++.||||||||+|++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 369999999999999999998763
No 489
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.021 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.+.||.|+|||+|.+.+|.-+
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc
Confidence 357789999999999999999866
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.15 E-value=0.0062 Score=57.45 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred EEEEccCCCcHHHHHHHHHHcCC-CcEEEEeCCC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMS-YDVYDVDLSR 259 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~-~~~~~i~~s~ 259 (480)
+.|.||+|||||++++++++.++ ..+..++...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 56899999999999999999873 3444554443
No 491
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.14 E-value=0.0085 Score=62.30 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...++++||+|+||||+++++++++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 492
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.14 E-value=0.044 Score=62.55 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999865
No 493
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.14 E-value=0.0059 Score=55.96 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=27.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
.|.|.|.||+|||++|+++...| |.+++.++..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 57899999999999999999865 6778877754
No 494
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.012 Score=57.00 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=40.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc-----CCCc--------------EEEEeCCC-cCC--------hHHHHHHHHhhcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF-----MSYD--------------VYDVDLSR-VAD--------DADLKSLLLQTTS 275 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~-----l~~~--------------~~~i~~s~-~~~--------~~~l~~l~~~~~~ 275 (480)
.+.++|.||.|.|||++.+.++.. .|.. +..+...+ +.. -.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 456899999999999999988752 2321 11111111 111 1234556777789
Q ss_pred CcEEEEecccc
Q 011664 276 KSVILIEDLDR 286 (480)
Q Consensus 276 ~sII~IDEiD~ 286 (480)
|++++|||+..
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 495
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.13 E-value=0.015 Score=57.62 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+-|.||.|||||||.+++++.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46688999999999999999866
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.13 E-value=0.0067 Score=65.64 Aligned_cols=39 Identities=31% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc----CCCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF----MSYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~----l~~~~~~i~~s 258 (480)
|++..+.+|+.||||||||+++..++.+ .|.+.+++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6778889999999999999999988532 36677777653
No 497
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.13 E-value=0.014 Score=60.35 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-+.++|+||+|||.++..+|-.. +..+++++...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 55566667899999999999999777321 23677777654
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.13 E-value=0.0059 Score=57.78 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...-+.|.||+|||||+|++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999999875
No 499
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.12 E-value=0.0042 Score=57.66 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEccCCCcHHHHHHHHHHcC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l 248 (480)
++|.|+||+||||+++.+...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999999877
No 500
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.12 E-value=0.0054 Score=54.81 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
+.|.||+|+|||++++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987544
Done!