Query 011664
Match_columns 480
No_of_seqs 506 out of 3188
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.3E-46 4.4E-51 389.0 22.5 211 182-395 140-367 (405)
2 4b4t_M 26S protease regulatory 100.0 3.3E-46 1.1E-50 390.6 23.7 211 182-395 173-400 (434)
3 4b4t_I 26S protease regulatory 100.0 2.5E-46 8.7E-51 388.1 21.6 211 182-395 174-401 (437)
4 4b4t_L 26S protease subunit RP 100.0 2.5E-45 8.7E-50 384.3 22.8 209 184-395 175-400 (437)
5 4b4t_K 26S protease regulatory 100.0 1.7E-44 5.8E-49 377.4 22.9 211 182-395 164-392 (428)
6 4b4t_H 26S protease regulatory 100.0 1.9E-44 6.6E-49 377.2 21.6 211 182-395 201-428 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3.4E-43 1.2E-47 391.4 6.4 271 182-478 469-757 (806)
8 3cf2_A TER ATPase, transitiona 100.0 5.5E-39 1.9E-43 357.6 17.5 208 185-395 199-420 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-36 5.4E-41 307.3 20.4 280 184-477 6-312 (322)
10 2x8a_A Nuclear valosin-contain 100.0 1.1E-35 3.9E-40 294.6 22.8 248 185-472 5-271 (274)
11 3cf0_A Transitional endoplasmi 100.0 2E-35 6.8E-40 296.1 22.6 268 184-477 9-294 (301)
12 3eie_A Vacuolar protein sortin 100.0 8.6E-36 3E-40 301.4 16.8 281 182-477 10-311 (322)
13 2zan_A Vacuolar protein sortin 100.0 1E-34 3.4E-39 306.4 18.6 281 183-477 127-434 (444)
14 2qp9_X Vacuolar protein sortin 100.0 2.3E-34 7.8E-39 295.2 17.7 280 183-477 44-344 (355)
15 3h4m_A Proteasome-activating n 100.0 2.2E-31 7.6E-36 262.8 21.1 211 182-395 9-236 (285)
16 1lv7_A FTSH; alpha/beta domain 100.0 7E-31 2.4E-35 256.1 21.9 207 184-394 6-229 (257)
17 2ce7_A Cell division protein F 100.0 8.4E-31 2.9E-35 277.8 23.4 206 185-394 11-233 (476)
18 3hu3_A Transitional endoplasmi 100.0 1.4E-31 4.9E-36 285.3 17.3 208 185-395 199-420 (489)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-30 9.2E-35 251.2 21.6 209 185-397 1-229 (262)
20 3b9p_A CG5977-PA, isoform A; A 100.0 3E-30 1E-34 256.4 22.3 250 184-472 15-279 (297)
21 3d8b_A Fidgetin-like protein 1 100.0 1.4E-30 4.7E-35 267.2 19.7 248 185-472 79-341 (357)
22 2dhr_A FTSH; AAA+ protein, hex 100.0 2.2E-29 7.4E-34 268.4 21.4 205 185-393 26-247 (499)
23 3vfd_A Spastin; ATPase, microt 100.0 3.8E-29 1.3E-33 259.0 22.2 251 181-471 106-371 (389)
24 2r62_A Cell division protease 100.0 5.3E-30 1.8E-34 251.0 12.6 207 184-393 5-229 (268)
25 1ypw_A Transitional endoplasmi 100.0 1.5E-32 5.3E-37 308.9 -6.4 270 183-478 470-757 (806)
26 1ixz_A ATP-dependent metallopr 100.0 3.3E-28 1.1E-32 236.7 21.1 209 181-393 7-232 (254)
27 1iy2_A ATP-dependent metallopr 99.9 6.1E-27 2.1E-31 231.3 20.4 209 181-393 31-256 (278)
28 3t15_A Ribulose bisphosphate c 99.9 2.3E-26 7.7E-31 229.7 12.7 165 218-388 30-222 (293)
29 1ypw_A Transitional endoplasmi 99.9 8.5E-26 2.9E-30 254.1 17.0 207 185-394 199-419 (806)
30 2c9o_A RUVB-like 1; hexameric 99.9 5.4E-24 1.8E-28 225.0 0.9 190 185-392 32-262 (456)
31 3pfi_A Holliday junction ATP-d 99.8 7.6E-20 2.6E-24 184.6 19.6 199 177-393 18-230 (338)
32 3syl_A Protein CBBX; photosynt 99.8 4.4E-20 1.5E-24 183.7 17.0 172 191-371 32-228 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 5.4E-19 1.8E-23 176.8 18.5 193 185-393 7-214 (324)
34 1g41_A Heat shock protein HSLU 99.8 2.3E-20 7.9E-25 195.6 5.6 160 190-356 15-188 (444)
35 1ofh_A ATP-dependent HSL prote 99.8 6.3E-19 2.2E-23 174.6 15.6 213 190-408 15-269 (310)
36 2chg_A Replication factor C sm 99.8 2.8E-17 9.7E-22 153.2 20.8 155 184-364 11-178 (226)
37 1d2n_A N-ethylmaleimide-sensit 99.8 7.2E-18 2.5E-22 165.4 16.9 211 190-411 33-264 (272)
38 3m6a_A ATP-dependent protease 99.8 7.2E-18 2.5E-22 181.9 16.3 205 189-410 80-313 (543)
39 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-17 3.9E-22 170.3 16.3 186 185-392 39-305 (368)
40 3u61_B DNA polymerase accessor 99.7 2.1E-17 7.3E-22 165.8 17.5 152 184-360 20-178 (324)
41 3hws_A ATP-dependent CLP prote 99.7 1.3E-17 4.5E-22 170.6 13.3 214 191-410 16-320 (363)
42 1njg_A DNA polymerase III subu 99.7 1.2E-16 4E-21 150.6 18.6 181 184-390 17-228 (250)
43 3pvs_A Replication-associated 99.7 3.3E-16 1.1E-20 165.0 21.8 187 185-408 21-218 (447)
44 1sxj_A Activator 1 95 kDa subu 99.7 2.7E-16 9.3E-21 168.5 18.4 187 177-378 28-241 (516)
45 1jbk_A CLPB protein; beta barr 99.7 1.2E-17 4E-22 152.2 6.5 150 185-356 17-194 (195)
46 2chq_A Replication factor C sm 99.7 2E-16 6.8E-21 157.0 15.0 170 182-377 9-192 (319)
47 4fcw_A Chaperone protein CLPB; 99.7 2E-16 6.8E-21 157.2 14.9 160 191-361 18-230 (311)
48 1l8q_A Chromosomal replication 99.7 1.8E-16 6.1E-21 159.3 13.6 191 182-392 3-210 (324)
49 1um8_A ATP-dependent CLP prote 99.7 1.5E-15 5.1E-20 155.9 19.7 213 191-410 22-337 (376)
50 3bos_A Putative DNA replicatio 99.7 2.4E-16 8.1E-21 149.6 11.1 189 181-390 19-217 (242)
51 1sxj_D Activator 1 41 kDa subu 99.7 3.3E-16 1.1E-20 158.0 12.6 180 184-390 31-235 (353)
52 1iqp_A RFCS; clamp loader, ext 99.7 6.8E-16 2.3E-20 153.7 14.4 180 184-390 19-212 (327)
53 2r44_A Uncharacterized protein 99.7 7.5E-16 2.6E-20 155.1 14.3 152 188-362 25-200 (331)
54 1in4_A RUVB, holliday junction 99.7 6.6E-15 2.3E-19 149.1 21.4 195 183-393 18-226 (334)
55 2v1u_A Cell division control p 99.6 3.1E-16 1E-20 159.5 10.6 191 188-392 17-251 (387)
56 1sxj_B Activator 1 37 kDa subu 99.6 1.6E-15 5.4E-20 150.8 15.5 180 184-390 15-209 (323)
57 2p65_A Hypothetical protein PF 99.6 9.1E-17 3.1E-21 146.2 6.0 145 185-348 17-187 (187)
58 1jr3_A DNA polymerase III subu 99.6 2.7E-15 9.3E-20 152.4 17.3 182 185-392 11-223 (373)
59 2z4s_A Chromosomal replication 99.6 9.9E-16 3.4E-20 161.1 13.7 193 182-393 97-309 (440)
60 2bjv_A PSP operon transcriptio 99.6 7.6E-15 2.6E-19 143.1 15.4 199 187-410 3-238 (265)
61 3pxg_A Negative regulator of g 99.6 8.4E-15 2.9E-19 155.2 16.8 176 185-392 175-380 (468)
62 2qby_B CDC6 homolog 3, cell di 99.6 7.1E-15 2.4E-19 149.9 14.8 152 189-361 19-211 (384)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 6.2E-15 2.1E-19 164.7 14.9 158 185-361 181-363 (758)
64 1r6b_X CLPA protein; AAA+, N-t 99.6 1.3E-14 4.6E-19 162.0 16.7 155 191-361 459-667 (758)
65 1sxj_E Activator 1 40 kDa subu 99.6 8.2E-15 2.8E-19 148.3 13.4 162 182-368 6-214 (354)
66 3pxi_A Negative regulator of g 99.6 9.6E-15 3.3E-19 163.3 14.8 160 190-361 491-676 (758)
67 1g8p_A Magnesium-chelatase 38 99.6 7.4E-15 2.5E-19 148.1 12.1 155 184-360 18-232 (350)
68 3te6_A Regulatory protein SIR3 99.6 1.1E-14 3.7E-19 146.7 12.6 129 223-362 44-213 (318)
69 1fnn_A CDC6P, cell division co 99.6 6E-14 2E-18 143.0 17.9 191 187-392 14-249 (389)
70 1sxj_C Activator 1 40 kDa subu 99.6 4.5E-14 1.5E-18 142.9 16.1 160 184-369 19-191 (340)
71 1qvr_A CLPB protein; coiled co 99.6 1.2E-14 4.2E-19 164.5 12.8 185 185-392 165-387 (854)
72 2qby_A CDC6 homolog 1, cell di 99.5 1.6E-14 5.5E-19 146.5 11.4 193 185-393 15-248 (386)
73 3pxi_A Negative regulator of g 99.5 5.9E-14 2E-18 156.9 16.5 176 185-392 175-380 (758)
74 1ojl_A Transcriptional regulat 99.5 9.5E-14 3.3E-18 139.0 12.4 197 190-411 2-234 (304)
75 3n70_A Transport activator; si 99.5 7.6E-14 2.6E-18 124.2 9.1 131 191-346 2-143 (145)
76 1qvr_A CLPB protein; coiled co 99.5 1.1E-13 3.9E-18 156.6 11.5 160 190-361 558-771 (854)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.4E-13 8.1E-18 145.0 13.1 146 191-361 23-197 (500)
78 1a5t_A Delta prime, HOLB; zinc 99.5 2.1E-12 7.3E-17 130.6 19.2 149 223-390 23-205 (334)
79 3co5_A Putative two-component 99.4 1.2E-13 4.2E-18 122.6 5.5 132 191-347 5-142 (143)
80 3f9v_A Minichromosome maintena 99.4 2.2E-13 7.4E-18 148.4 4.5 184 190-394 295-515 (595)
81 4akg_A Glutathione S-transfera 99.3 4.3E-12 1.5E-16 156.2 13.8 135 224-361 1267-1432(2695)
82 2gno_A DNA polymerase III, gam 99.3 2.1E-11 7E-16 122.2 15.5 121 225-360 19-152 (305)
83 3ec2_A DNA replication protein 99.3 2.6E-12 9E-17 117.7 6.0 128 185-325 5-143 (180)
84 1w5s_A Origin recognition comp 99.3 3E-11 1E-15 124.0 13.7 196 186-392 18-268 (412)
85 3cmw_A Protein RECA, recombina 99.2 2.5E-11 8.4E-16 144.1 7.5 137 185-325 1015-1218(1706)
86 1svm_A Large T antigen; AAA+ f 99.1 7.3E-11 2.5E-15 121.5 7.8 115 219-346 164-284 (377)
87 2w58_A DNAI, primosome compone 99.1 1.3E-10 4.6E-15 108.0 8.3 98 185-288 20-128 (202)
88 3k1j_A LON protease, ATP-depen 99.1 3.6E-10 1.2E-14 123.3 11.3 53 183-250 34-86 (604)
89 2qgz_A Helicase loader, putati 99.0 2.4E-10 8.1E-15 114.5 6.2 97 186-288 120-227 (308)
90 2fna_A Conserved hypothetical 99.0 1E-08 3.5E-13 102.3 16.3 178 186-391 9-251 (357)
91 2kjq_A DNAA-related protein; s 99.0 3.6E-10 1.2E-14 101.3 4.9 99 224-339 36-140 (149)
92 1ny5_A Transcriptional regulat 98.9 1.2E-08 4.2E-13 105.2 15.2 197 190-411 137-369 (387)
93 3dzd_A Transcriptional regulat 98.9 1.8E-08 6.1E-13 103.3 16.3 197 190-411 129-360 (368)
94 2r2a_A Uncharacterized protein 98.9 2.2E-09 7.6E-14 100.9 8.6 119 226-350 7-156 (199)
95 1tue_A Replication protein E1; 98.9 1.3E-09 4.4E-14 102.7 6.7 115 220-347 54-179 (212)
96 2vhj_A Ntpase P4, P4; non- hyd 98.9 6.4E-10 2.2E-14 111.6 3.8 109 220-332 119-242 (331)
97 2qen_A Walker-type ATPase; unk 98.8 2.6E-07 8.8E-12 92.0 20.9 183 185-391 7-247 (350)
98 3vkg_A Dynein heavy chain, cyt 98.8 2.9E-08 9.8E-13 123.5 15.1 135 224-361 1304-1470(3245)
99 1u0j_A DNA replication protein 98.7 1.2E-07 4.2E-12 92.7 12.1 120 222-357 102-248 (267)
100 4akg_A Glutathione S-transfera 98.6 7.8E-08 2.7E-12 118.9 12.2 125 224-356 645-789 (2695)
101 3aji_B S6C, proteasome (prosom 98.6 1.9E-08 6.4E-13 80.9 3.6 81 348-476 2-82 (83)
102 2krk_A 26S protease regulatory 98.6 4.5E-08 1.5E-12 79.5 4.6 53 343-395 7-59 (86)
103 3kw6_A 26S protease regulatory 98.5 1.3E-07 4.4E-12 75.1 5.7 52 345-396 1-52 (78)
104 3cmu_A Protein RECA, recombina 98.4 2E-07 6.8E-12 112.2 5.9 102 220-325 1423-1563(2050)
105 3f8t_A Predicted ATPase involv 98.4 3.9E-07 1.3E-11 95.6 6.7 139 192-351 215-385 (506)
106 3vlf_B 26S protease regulatory 98.3 4.1E-07 1.4E-11 74.0 4.8 48 348-395 2-49 (88)
107 3vkg_A Dynein heavy chain, cyt 98.3 3E-06 1E-10 105.8 12.3 123 225-356 605-749 (3245)
108 1jr3_D DNA polymerase III, del 98.2 1.2E-05 4.1E-10 80.8 13.5 133 223-371 17-166 (343)
109 1ye8_A Protein THEP1, hypothet 98.0 9.2E-06 3.2E-10 74.5 8.0 27 226-252 2-28 (178)
110 1z6t_A APAF-1, apoptotic prote 98.0 0.00011 3.7E-09 79.1 17.4 170 186-390 120-328 (591)
111 2cvh_A DNA repair and recombin 97.9 3.5E-05 1.2E-09 71.6 8.8 40 220-259 16-55 (220)
112 3sfz_A APAF-1, apoptotic pepti 97.8 0.001 3.5E-08 76.9 22.0 169 185-388 119-326 (1249)
113 2dzn_B 26S protease regulatory 97.8 2.5E-06 8.6E-11 68.3 -0.3 46 350-395 1-46 (82)
114 1n0w_A DNA repair protein RAD5 97.7 4.5E-05 1.6E-09 71.9 7.4 40 220-259 20-68 (243)
115 2zr9_A Protein RECA, recombina 97.7 4.1E-05 1.4E-09 77.7 7.4 70 220-289 57-153 (349)
116 2w0m_A SSO2452; RECA, SSPF, un 97.7 6.8E-05 2.3E-09 69.9 8.4 37 220-256 19-58 (235)
117 3cmu_A Protein RECA, recombina 97.7 4.9E-05 1.7E-09 91.9 8.2 70 220-289 1077-1173(2050)
118 3hr8_A Protein RECA; alpha and 97.7 0.00012 4.1E-09 74.5 9.7 70 220-289 57-153 (356)
119 2z43_A DNA repair and recombin 97.7 3.2E-05 1.1E-09 77.5 5.2 40 220-259 103-151 (324)
120 1xp8_A RECA protein, recombina 97.7 0.00013 4.3E-09 74.6 9.6 70 220-289 70-166 (366)
121 2orw_A Thymidine kinase; TMTK, 97.6 1.7E-05 5.7E-10 73.1 2.7 107 226-346 5-138 (184)
122 1u94_A RECA protein, recombina 97.6 6.2E-05 2.1E-09 76.7 7.1 70 220-289 59-155 (356)
123 2ehv_A Hypothetical protein PH 97.6 9.2E-05 3.1E-09 70.0 7.7 26 220-245 26-51 (251)
124 1qhx_A CPT, protein (chloramph 97.6 4.7E-05 1.6E-09 68.5 5.0 33 225-257 4-36 (178)
125 3trf_A Shikimate kinase, SK; a 97.6 2.7E-05 9.3E-10 70.6 3.3 33 224-256 5-37 (185)
126 1v5w_A DMC1, meiotic recombina 97.6 0.00011 3.6E-09 74.4 7.7 40 220-259 118-166 (343)
127 3vaa_A Shikimate kinase, SK; s 97.5 4E-05 1.4E-09 70.8 3.4 34 223-256 24-57 (199)
128 1pzn_A RAD51, DNA repair and r 97.5 9.5E-05 3.3E-09 75.0 6.5 40 220-259 127-175 (349)
129 2rhm_A Putative kinase; P-loop 97.5 4.5E-05 1.5E-09 69.4 3.6 34 222-255 3-36 (193)
130 2a5y_B CED-4; apoptosis; HET: 97.5 0.0016 5.6E-08 69.6 16.1 163 193-388 131-335 (549)
131 3kb2_A SPBC2 prophage-derived 97.4 6.8E-05 2.3E-09 66.7 3.5 31 226-256 3-33 (173)
132 1nlf_A Regulatory protein REPA 97.4 0.00026 8.9E-09 68.9 7.8 28 220-247 26-53 (279)
133 1via_A Shikimate kinase; struc 97.4 6.6E-05 2.2E-09 67.7 2.8 31 226-256 6-36 (175)
134 3iij_A Coilin-interacting nucl 97.4 7.5E-05 2.6E-09 67.5 3.1 32 224-255 11-42 (180)
135 2i1q_A DNA repair and recombin 97.4 0.00014 4.9E-09 72.3 5.4 40 220-259 94-152 (322)
136 1gvn_B Zeta; postsegregational 97.4 0.00024 8.2E-09 70.0 6.8 57 196-257 10-66 (287)
137 1y63_A LMAJ004144AAA protein; 97.3 0.0001 3.4E-09 67.3 3.6 33 224-256 10-43 (184)
138 2iyv_A Shikimate kinase, SK; t 97.3 8.2E-05 2.8E-09 67.4 3.0 31 226-256 4-34 (184)
139 2r8r_A Sensor protein; KDPD, P 97.3 0.00034 1.2E-08 66.7 7.4 61 225-287 7-96 (228)
140 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.8E-09 65.0 4.4 31 225-255 5-35 (173)
141 1zuh_A Shikimate kinase; alpha 97.3 0.0001 3.4E-09 65.9 3.1 32 225-256 8-39 (168)
142 3lda_A DNA repair protein RAD5 97.3 0.00041 1.4E-08 71.7 7.8 40 220-259 174-222 (400)
143 3lw7_A Adenylate kinase relate 97.3 0.00012 4E-09 64.8 3.1 29 226-255 3-31 (179)
144 2ze6_A Isopentenyl transferase 97.3 0.00013 4.3E-09 70.5 3.6 32 226-257 3-34 (253)
145 3io5_A Recombination and repai 97.3 0.0006 2E-08 68.2 8.5 69 220-289 25-125 (333)
146 1zp6_A Hypothetical protein AT 97.2 0.00019 6.5E-09 65.2 4.3 35 223-257 8-42 (191)
147 1e6c_A Shikimate kinase; phosp 97.2 0.00012 4.1E-09 65.4 2.8 31 226-256 4-34 (173)
148 2zts_A Putative uncharacterize 97.2 0.00049 1.7E-08 64.8 7.1 39 220-258 26-68 (251)
149 2cdn_A Adenylate kinase; phosp 97.2 0.00016 5.5E-09 66.6 3.5 32 224-255 20-51 (201)
150 1tev_A UMP-CMP kinase; ploop, 97.2 0.00014 4.9E-09 65.8 3.1 31 225-255 4-34 (196)
151 1qf9_A UMP/CMP kinase, protein 97.2 0.00017 5.7E-09 65.3 3.5 33 223-255 5-37 (194)
152 1ly1_A Polynucleotide kinase; 97.2 0.00018 6.1E-09 64.4 3.5 30 224-253 2-32 (181)
153 2p5t_B PEZT; postsegregational 97.2 0.00027 9.2E-09 68.0 5.0 38 223-260 31-68 (253)
154 2c95_A Adenylate kinase 1; tra 97.2 0.00017 5.9E-09 65.6 3.4 32 225-256 10-41 (196)
155 3cmw_A Protein RECA, recombina 97.2 0.00029 9.8E-09 84.2 6.1 71 220-290 30-127 (1706)
156 1zd8_A GTP:AMP phosphotransfer 97.2 0.0002 6.8E-09 67.4 3.6 32 224-255 7-38 (227)
157 3jvv_A Twitching mobility prot 97.2 0.0013 4.5E-08 66.8 9.8 61 225-285 124-206 (356)
158 3t61_A Gluconokinase; PSI-biol 97.1 0.0002 6.7E-09 66.1 3.3 33 224-256 18-50 (202)
159 3cm0_A Adenylate kinase; ATP-b 97.1 0.00014 4.8E-09 65.8 2.3 30 226-255 6-35 (186)
160 2bwj_A Adenylate kinase 5; pho 97.1 0.00019 6.5E-09 65.5 3.1 32 224-255 12-43 (199)
161 1g41_A Heat shock protein HSLU 97.1 0.0011 3.8E-08 69.3 9.3 146 260-411 234-406 (444)
162 3dl0_A Adenylate kinase; phosp 97.1 0.0002 6.9E-09 66.7 3.3 29 227-255 3-31 (216)
163 3be4_A Adenylate kinase; malar 97.1 0.00019 6.5E-09 67.2 3.1 31 225-255 6-36 (217)
164 2pt5_A Shikimate kinase, SK; a 97.1 0.00018 6.3E-09 63.9 2.9 31 226-256 2-32 (168)
165 1kht_A Adenylate kinase; phosp 97.1 0.00015 5.1E-09 65.6 2.1 25 225-249 4-28 (192)
166 1aky_A Adenylate kinase; ATP:A 97.1 0.00023 8E-09 66.6 3.4 31 225-255 5-35 (220)
167 3fb4_A Adenylate kinase; psych 97.1 0.00022 7.5E-09 66.3 2.9 29 227-255 3-31 (216)
168 1ukz_A Uridylate kinase; trans 97.1 0.00031 1.1E-08 64.6 3.8 32 225-256 16-47 (203)
169 2b8t_A Thymidine kinase; deoxy 97.1 0.0013 4.4E-08 62.5 8.1 62 226-287 14-101 (223)
170 2vli_A Antibiotic resistance p 97.0 0.00028 9.4E-09 63.6 3.2 29 225-253 6-34 (183)
171 1knq_A Gluconate kinase; ALFA/ 97.0 0.00027 9.1E-09 63.4 3.1 31 225-255 9-39 (175)
172 2c9o_A RUVB-like 1; hexameric 97.0 0.00079 2.7E-08 70.5 6.9 73 276-362 296-381 (456)
173 1zak_A Adenylate kinase; ATP:A 97.0 0.00021 7.3E-09 66.9 2.1 32 224-255 5-36 (222)
174 1ak2_A Adenylate kinase isoenz 97.0 0.00034 1.2E-08 66.2 3.5 31 225-255 17-47 (233)
175 3crm_A TRNA delta(2)-isopenten 97.0 0.00047 1.6E-08 69.2 4.4 34 224-257 5-38 (323)
176 4eun_A Thermoresistant glucoki 97.0 0.0005 1.7E-08 63.4 4.3 31 224-254 29-59 (200)
177 2pez_A Bifunctional 3'-phospho 97.0 0.00059 2E-08 61.5 4.6 33 224-256 5-40 (179)
178 2pbr_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 62.0 4.2 31 227-257 3-36 (195)
179 4gp7_A Metallophosphoesterase; 96.9 0.0003 1E-08 63.5 2.3 20 224-243 9-28 (171)
180 2px0_A Flagellar biosynthesis 96.9 0.0045 1.6E-07 61.1 11.1 84 197-282 80-189 (296)
181 1e4v_A Adenylate kinase; trans 96.9 0.00036 1.2E-08 65.0 2.8 29 227-255 3-31 (214)
182 3umf_A Adenylate kinase; rossm 96.9 0.00051 1.8E-08 65.0 3.9 32 222-253 27-58 (217)
183 3tlx_A Adenylate kinase 2; str 96.9 0.00043 1.5E-08 66.2 3.4 34 223-256 28-61 (243)
184 2if2_A Dephospho-COA kinase; a 96.9 0.00045 1.6E-08 63.5 3.3 30 226-256 3-32 (204)
185 1vt4_I APAF-1 related killer D 96.9 0.0058 2E-07 70.0 12.7 55 193-259 131-191 (1221)
186 2bbw_A Adenylate kinase 4, AK4 96.8 0.00062 2.1E-08 64.9 3.9 31 224-254 27-57 (246)
187 3e1s_A Exodeoxyribonuclease V, 96.8 0.0017 6E-08 70.0 7.7 63 225-287 205-291 (574)
188 2r6a_A DNAB helicase, replicat 96.8 0.0015 5.1E-08 68.4 6.9 38 220-257 199-240 (454)
189 2v54_A DTMP kinase, thymidylat 96.8 0.0009 3.1E-08 61.2 4.6 33 225-257 5-38 (204)
190 2jaq_A Deoxyguanosine kinase; 96.8 0.00065 2.2E-08 62.0 3.5 29 226-254 2-30 (205)
191 1cke_A CK, MSSA, protein (cyti 96.8 0.0007 2.4E-08 63.2 3.8 30 225-254 6-35 (227)
192 3sr0_A Adenylate kinase; phosp 96.8 0.00071 2.4E-08 63.4 3.8 28 227-254 3-30 (206)
193 2xb4_A Adenylate kinase; ATP-b 96.8 0.00073 2.5E-08 63.6 3.8 29 227-255 3-31 (223)
194 1nks_A Adenylate kinase; therm 96.8 0.00047 1.6E-08 62.3 2.3 31 226-256 3-36 (194)
195 1jjv_A Dephospho-COA kinase; P 96.8 0.00062 2.1E-08 62.8 3.1 30 226-256 4-33 (206)
196 2z0h_A DTMP kinase, thymidylat 96.7 0.00095 3.3E-08 60.6 4.2 31 227-257 3-36 (197)
197 3uie_A Adenylyl-sulfate kinase 96.7 0.0011 3.9E-08 60.9 4.7 33 224-256 25-60 (200)
198 3upu_A ATP-dependent DNA helic 96.7 0.0014 4.9E-08 68.5 6.1 64 182-258 16-83 (459)
199 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.7E-08 64.0 4.4 33 225-257 5-40 (260)
200 3kl4_A SRP54, signal recogniti 96.7 0.0044 1.5E-07 64.5 9.0 61 196-257 69-133 (433)
201 1uf9_A TT1252 protein; P-loop, 96.7 0.001 3.5E-08 60.7 3.8 32 224-256 8-39 (203)
202 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.7E-08 60.8 3.8 31 226-256 4-34 (208)
203 3dm5_A SRP54, signal recogniti 96.6 0.0049 1.7E-07 64.4 9.1 62 196-258 73-137 (443)
204 1vma_A Cell division protein F 96.6 0.0082 2.8E-07 59.6 10.4 59 198-257 79-140 (306)
205 3nwj_A ATSK2; P loop, shikimat 96.6 0.00084 2.9E-08 64.9 3.0 32 225-256 49-80 (250)
206 2plr_A DTMP kinase, probable t 96.6 0.0013 4.4E-08 60.3 4.2 32 225-256 5-38 (213)
207 4a74_A DNA repair and recombin 96.6 0.0031 1E-07 58.5 6.8 29 220-248 21-49 (231)
208 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.4E-08 62.9 4.2 31 225-255 10-40 (233)
209 2fz4_A DNA repair protein RAD2 96.6 0.0053 1.8E-07 58.3 8.4 32 226-257 110-141 (237)
210 2grj_A Dephospho-COA kinase; T 96.6 0.00091 3.1E-08 62.0 2.9 31 226-256 14-44 (192)
211 1w4r_A Thymidine kinase; type 96.5 0.01 3.5E-07 55.1 9.6 105 226-345 22-151 (195)
212 1g5t_A COB(I)alamin adenosyltr 96.5 0.0075 2.6E-07 56.1 8.6 109 225-345 29-178 (196)
213 2iut_A DNA translocase FTSK; n 96.5 0.0072 2.5E-07 64.9 9.6 74 277-357 345-420 (574)
214 2wwf_A Thymidilate kinase, put 96.5 0.00065 2.2E-08 62.6 1.3 28 224-251 10-37 (212)
215 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00091 3.1E-08 67.8 2.5 30 225-254 25-54 (359)
216 2q6t_A DNAB replication FORK h 96.5 0.0032 1.1E-07 65.7 6.7 38 220-257 196-237 (444)
217 3a8t_A Adenylate isopentenyltr 96.5 0.0015 5E-08 65.9 3.8 35 225-259 41-75 (339)
218 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0048 1.7E-07 61.9 7.3 62 225-286 172-251 (330)
219 2h92_A Cytidylate kinase; ross 96.4 0.0016 5.4E-08 60.5 3.5 32 225-256 4-35 (219)
220 1vht_A Dephospho-COA kinase; s 96.4 0.0017 5.7E-08 60.5 3.6 31 225-256 5-35 (218)
221 2qt1_A Nicotinamide riboside k 96.4 0.0016 5.4E-08 60.1 3.5 31 225-255 22-53 (207)
222 2ius_A DNA translocase FTSK; n 96.4 0.0071 2.4E-07 64.3 8.8 73 278-357 300-374 (512)
223 4e22_A Cytidylate kinase; P-lo 96.4 0.0026 8.7E-08 61.1 4.8 30 225-254 28-57 (252)
224 2bdt_A BH3686; alpha-beta prot 96.4 0.0021 7E-08 58.4 3.9 25 226-250 4-28 (189)
225 2qor_A Guanylate kinase; phosp 96.4 0.0019 6.6E-08 59.6 3.8 28 222-249 10-37 (204)
226 1nn5_A Similar to deoxythymidy 96.4 0.0009 3.1E-08 61.7 1.5 26 224-249 9-34 (215)
227 1ltq_A Polynucleotide kinase; 96.4 0.0013 4.4E-08 64.4 2.6 30 225-254 3-33 (301)
228 2dr3_A UPF0273 protein PH0284; 96.4 0.0026 8.9E-08 59.7 4.7 40 220-259 19-61 (247)
229 3foz_A TRNA delta(2)-isopenten 96.3 0.0024 8.2E-08 63.6 4.4 35 223-257 9-43 (316)
230 4b3f_X DNA-binding protein smu 96.3 0.0061 2.1E-07 66.6 8.1 59 186-259 182-243 (646)
231 1kgd_A CASK, peripheral plasma 96.3 0.0023 7.9E-08 58.0 3.9 25 225-249 6-30 (180)
232 2j41_A Guanylate kinase; GMP, 96.3 0.0025 8.5E-08 58.3 3.9 25 224-248 6-30 (207)
233 1q3t_A Cytidylate kinase; nucl 96.3 0.0029 9.9E-08 59.8 4.4 31 225-255 17-47 (236)
234 1uj2_A Uridine-cytidine kinase 96.3 0.0023 8E-08 61.2 3.7 38 224-261 22-67 (252)
235 2yvu_A Probable adenylyl-sulfa 96.2 0.0039 1.3E-07 56.4 4.9 33 224-256 13-48 (186)
236 1rz3_A Hypothetical protein rb 96.2 0.0083 2.8E-07 55.2 6.8 35 224-258 22-59 (201)
237 2qmh_A HPR kinase/phosphorylas 96.2 0.0028 9.4E-08 59.2 3.5 32 224-256 34-65 (205)
238 3zvl_A Bifunctional polynucleo 96.2 0.0018 6.3E-08 67.0 2.5 31 224-254 258-288 (416)
239 3d3q_A TRNA delta(2)-isopenten 96.1 0.0026 8.7E-08 64.2 3.4 32 225-256 8-39 (340)
240 3tau_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 58.4 3.9 27 224-250 8-34 (208)
241 2f6r_A COA synthase, bifunctio 96.1 0.0026 8.8E-08 62.2 3.1 31 225-256 76-106 (281)
242 3exa_A TRNA delta(2)-isopenten 96.0 0.0035 1.2E-07 62.5 3.8 32 225-256 4-35 (322)
243 1m7g_A Adenylylsulfate kinase; 96.0 0.0039 1.3E-07 57.8 3.9 34 223-256 24-61 (211)
244 2v3c_C SRP54, signal recogniti 96.0 0.0079 2.7E-07 62.6 6.5 64 224-287 99-192 (432)
245 3c8u_A Fructokinase; YP_612366 96.0 0.0049 1.7E-07 57.0 4.5 34 224-257 22-58 (208)
246 1ex7_A Guanylate kinase; subst 96.0 0.0048 1.6E-07 56.8 4.3 28 225-252 2-29 (186)
247 3tr0_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 56.7 3.9 25 225-249 8-32 (205)
248 3fdi_A Uncharacterized protein 96.0 0.0038 1.3E-07 58.0 3.6 29 226-254 8-36 (201)
249 3thx_B DNA mismatch repair pro 95.9 0.011 3.9E-07 66.9 7.8 24 223-246 672-695 (918)
250 3b9q_A Chloroplast SRP recepto 95.9 0.0057 1.9E-07 60.6 4.7 53 196-248 70-124 (302)
251 3a00_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 56.5 3.4 25 225-249 2-26 (186)
252 1tf7_A KAIC; homohexamer, hexa 95.9 0.023 7.7E-07 60.5 9.5 37 220-256 277-316 (525)
253 1c9k_A COBU, adenosylcobinamid 95.8 0.012 4.2E-07 53.8 6.2 33 227-260 2-34 (180)
254 2oap_1 GSPE-2, type II secreti 95.8 0.014 4.8E-07 62.0 7.5 62 224-285 260-343 (511)
255 3asz_A Uridine kinase; cytidin 95.7 0.0051 1.7E-07 56.7 3.3 32 225-256 7-38 (211)
256 2og2_A Putative signal recogni 95.7 0.0075 2.6E-07 61.3 4.5 53 196-248 127-181 (359)
257 1lvg_A Guanylate kinase, GMP k 95.7 0.0055 1.9E-07 56.5 3.3 25 224-248 4-28 (198)
258 1htw_A HI0065; nucleotide-bind 95.7 0.008 2.7E-07 53.7 4.1 27 222-248 31-57 (158)
259 3tui_C Methionine import ATP-b 95.6 0.022 7.5E-07 58.0 7.8 24 225-248 55-78 (366)
260 3eph_A TRNA isopentenyltransfe 95.6 0.0054 1.9E-07 63.2 3.3 33 224-256 2-34 (409)
261 1gtv_A TMK, thymidylate kinase 95.6 0.0029 9.8E-08 58.3 1.0 25 226-250 2-26 (214)
262 2yhs_A FTSY, cell division pro 95.6 0.0089 3.1E-07 63.2 4.8 26 223-248 292-317 (503)
263 2ce2_X GTPase HRAS; signaling 95.5 0.022 7.5E-07 48.9 6.5 22 226-247 5-26 (166)
264 2j37_W Signal recognition part 95.5 0.027 9.3E-07 59.7 8.4 59 197-257 74-137 (504)
265 1odf_A YGR205W, hypothetical 3 95.5 0.0093 3.2E-07 58.7 4.5 27 223-249 30-56 (290)
266 1z6g_A Guanylate kinase; struc 95.5 0.0075 2.6E-07 56.5 3.6 25 224-248 23-47 (218)
267 1wb9_A DNA mismatch repair pro 95.5 0.019 6.4E-07 64.4 7.3 23 224-246 607-629 (800)
268 1znw_A Guanylate kinase, GMP k 95.5 0.0082 2.8E-07 55.5 3.8 26 224-249 20-45 (207)
269 3ney_A 55 kDa erythrocyte memb 95.5 0.009 3.1E-07 55.6 4.0 26 224-249 19-44 (197)
270 3b6e_A Interferon-induced heli 95.5 0.0079 2.7E-07 55.0 3.6 23 225-247 49-71 (216)
271 1zu4_A FTSY; GTPase, signal re 95.5 0.016 5.4E-07 57.9 6.1 61 198-258 74-142 (320)
272 1cr0_A DNA primase/helicase; R 95.5 0.0072 2.5E-07 59.0 3.5 39 220-258 31-73 (296)
273 2v9p_A Replication protein E1; 95.4 0.0095 3.2E-07 59.2 4.2 33 220-252 122-154 (305)
274 1x6v_B Bifunctional 3'-phospho 95.4 0.011 3.7E-07 64.3 4.7 33 224-256 52-87 (630)
275 1xx6_A Thymidine kinase; NESG, 95.3 0.024 8.3E-07 52.3 6.2 62 226-287 10-93 (191)
276 3gmt_A Adenylate kinase; ssgci 95.3 0.0075 2.6E-07 57.5 2.7 30 226-255 10-39 (230)
277 3bh0_A DNAB-like replicative h 95.3 0.017 5.7E-07 57.4 5.4 39 220-258 64-105 (315)
278 2eyu_A Twitching motility prot 95.3 0.01 3.4E-07 57.5 3.7 63 223-285 24-108 (261)
279 4f4c_A Multidrug resistance pr 95.2 0.047 1.6E-06 64.4 10.0 30 221-250 441-470 (1321)
280 1j8m_F SRP54, signal recogniti 95.2 0.047 1.6E-06 53.8 8.5 37 224-260 98-137 (297)
281 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 55.7 3.8 27 223-249 15-41 (219)
282 3tqf_A HPR(Ser) kinase; transf 95.2 0.014 4.9E-07 53.2 4.2 24 224-247 16-39 (181)
283 1kao_A RAP2A; GTP-binding prot 95.2 0.05 1.7E-06 46.8 7.7 22 226-247 5-26 (167)
284 3hdt_A Putative kinase; struct 95.2 0.0094 3.2E-07 56.4 3.1 31 225-255 15-45 (223)
285 1nrj_B SR-beta, signal recogni 95.2 0.033 1.1E-06 51.0 6.8 25 224-248 12-36 (218)
286 3e70_C DPA, signal recognition 95.1 0.02 7E-07 57.3 5.5 52 197-248 98-153 (328)
287 1hv8_A Putative ATP-dependent 95.1 0.033 1.1E-06 54.8 7.0 56 187-245 6-65 (367)
288 3thx_A DNA mismatch repair pro 95.1 0.048 1.6E-06 62.0 9.1 21 225-245 663-683 (934)
289 4eaq_A DTMP kinase, thymidylat 95.1 0.0098 3.3E-07 56.3 2.9 30 226-255 28-59 (229)
290 2jeo_A Uridine-cytidine kinase 95.1 0.012 3.9E-07 56.0 3.3 26 226-251 27-52 (245)
291 2ewv_A Twitching motility prot 95.1 0.01 3.6E-07 60.4 3.2 28 221-248 133-160 (372)
292 2p5s_A RAS and EF-hand domain 95.0 0.05 1.7E-06 49.2 7.4 24 224-247 28-51 (199)
293 2i3b_A HCR-ntpase, human cance 95.0 0.011 3.7E-07 54.4 2.8 23 226-248 3-25 (189)
294 1p9r_A General secretion pathw 94.9 0.031 1E-06 57.9 6.3 57 186-256 143-202 (418)
295 1r8s_A ADP-ribosylation factor 94.8 0.11 3.8E-06 44.7 8.9 20 227-246 3-22 (164)
296 3lnc_A Guanylate kinase, GMP k 94.8 0.0094 3.2E-07 55.9 1.9 25 224-248 27-52 (231)
297 1u8z_A RAS-related protein RAL 94.8 0.047 1.6E-06 47.0 6.4 23 225-247 5-27 (168)
298 2ged_A SR-beta, signal recogni 94.8 0.014 4.8E-07 52.4 3.0 26 223-248 47-72 (193)
299 1np6_A Molybdopterin-guanine d 94.7 0.016 5.6E-07 52.6 3.3 26 223-248 5-30 (174)
300 2erx_A GTP-binding protein DI- 94.7 0.051 1.7E-06 47.1 6.4 21 226-246 5-25 (172)
301 3kta_A Chromosome segregation 94.7 0.019 6.4E-07 51.4 3.6 24 226-249 28-51 (182)
302 1a7j_A Phosphoribulokinase; tr 94.7 0.0082 2.8E-07 59.0 1.3 36 226-261 7-45 (290)
303 3tkl_A RAS-related protein RAB 94.7 0.044 1.5E-06 49.0 6.1 23 225-247 17-39 (196)
304 2fg5_A RAB-22B, RAS-related pr 94.7 0.046 1.6E-06 49.1 6.2 22 226-247 25-46 (192)
305 1c1y_A RAS-related protein RAP 94.7 0.045 1.6E-06 47.2 6.0 22 226-247 5-26 (167)
306 1x3s_A RAS-related protein RAB 94.6 0.062 2.1E-06 47.8 6.9 22 226-247 17-38 (195)
307 4a82_A Cystic fibrosis transme 94.6 0.048 1.7E-06 58.6 7.2 27 223-249 366-392 (578)
308 3tqc_A Pantothenate kinase; bi 94.6 0.038 1.3E-06 55.2 5.7 35 225-259 93-132 (321)
309 2axn_A 6-phosphofructo-2-kinas 94.5 0.026 8.8E-07 60.1 4.7 33 224-256 35-70 (520)
310 2a9k_A RAS-related protein RAL 94.5 0.066 2.3E-06 47.1 6.7 23 225-247 19-41 (187)
311 2xxa_A Signal recognition part 94.4 0.036 1.2E-06 57.7 5.4 62 198-259 74-139 (433)
312 1p5z_B DCK, deoxycytidine kina 94.4 0.011 3.9E-07 56.6 1.5 25 225-249 25-49 (263)
313 3t1o_A Gliding protein MGLA; G 94.4 0.067 2.3E-06 47.5 6.6 23 226-248 16-38 (198)
314 2ocp_A DGK, deoxyguanosine kin 94.4 0.028 9.7E-07 53.0 4.1 25 225-249 3-27 (241)
315 2pcj_A ABC transporter, lipopr 94.4 0.016 5.6E-07 54.6 2.4 27 225-251 31-57 (224)
316 2onk_A Molybdate/tungstate ABC 94.3 0.02 6.8E-07 54.7 3.0 26 225-250 25-50 (240)
317 2cbz_A Multidrug resistance-as 94.3 0.019 6.5E-07 54.6 2.9 26 223-248 30-55 (237)
318 3pey_A ATP-dependent RNA helic 94.3 0.055 1.9E-06 53.8 6.4 56 187-242 5-62 (395)
319 3tif_A Uncharacterized ABC tra 94.3 0.019 6.5E-07 54.5 2.9 28 224-251 31-58 (235)
320 1sq5_A Pantothenate kinase; P- 94.3 0.017 5.8E-07 57.1 2.5 25 225-249 81-105 (308)
321 1m8p_A Sulfate adenylyltransfe 94.3 0.021 7.3E-07 61.5 3.5 33 225-257 397-433 (573)
322 3aez_A Pantothenate kinase; tr 94.3 0.023 7.8E-07 56.5 3.4 60 330-392 212-271 (312)
323 1rj9_A FTSY, signal recognitio 94.3 0.024 8.4E-07 56.1 3.6 25 224-248 102-126 (304)
324 1fzq_A ADP-ribosylation factor 94.2 0.087 3E-06 46.9 6.9 24 224-247 16-39 (181)
325 2o8b_B DNA mismatch repair pro 94.2 0.088 3E-06 60.5 8.5 22 224-245 789-810 (1022)
326 1xjc_A MOBB protein homolog; s 94.2 0.039 1.3E-06 50.0 4.5 33 225-257 5-40 (169)
327 2bov_A RAla, RAS-related prote 94.2 0.079 2.7E-06 47.6 6.7 23 225-247 15-37 (206)
328 3b85_A Phosphate starvation-in 94.2 0.018 6.3E-07 53.7 2.3 23 225-247 23-45 (208)
329 4i1u_A Dephospho-COA kinase; s 94.2 0.028 9.5E-07 52.7 3.5 31 226-257 11-41 (210)
330 1oix_A RAS-related protein RAB 94.1 0.025 8.7E-07 51.1 3.1 23 226-248 31-53 (191)
331 2f9l_A RAB11B, member RAS onco 94.1 0.026 8.9E-07 51.2 3.2 22 226-247 7-28 (199)
332 4a1f_A DNAB helicase, replicat 94.1 0.054 1.8E-06 54.5 5.8 39 220-258 42-83 (338)
333 2f7s_A C25KG, RAS-related prot 94.1 0.065 2.2E-06 49.0 5.9 22 226-247 27-48 (217)
334 1q57_A DNA primase/helicase; d 94.0 0.036 1.2E-06 58.4 4.5 39 220-258 238-280 (503)
335 1lw7_A Transcriptional regulat 94.0 0.026 8.9E-07 57.0 3.3 28 224-251 170-197 (365)
336 3bgw_A DNAB-like replicative h 94.0 0.043 1.5E-06 57.2 5.0 39 220-258 193-234 (444)
337 2gk6_A Regulator of nonsense t 94.0 0.024 8.3E-07 61.6 3.2 33 226-258 197-233 (624)
338 1sgw_A Putative ABC transporte 94.0 0.037 1.3E-06 51.9 4.0 27 225-251 36-62 (214)
339 2dyk_A GTP-binding protein; GT 94.0 0.03 1E-06 48.2 3.2 22 226-247 3-24 (161)
340 1g6h_A High-affinity branched- 93.9 0.022 7.7E-07 54.8 2.5 26 225-250 34-59 (257)
341 2ffh_A Protein (FFH); SRP54, s 93.9 0.074 2.5E-06 55.1 6.5 60 197-258 73-135 (425)
342 1b0u_A Histidine permease; ABC 93.9 0.025 8.6E-07 54.6 2.8 27 225-251 33-59 (262)
343 2gf0_A GTP-binding protein DI- 93.9 0.12 4.3E-06 46.0 7.4 22 225-246 9-30 (199)
344 1mv5_A LMRA, multidrug resista 93.9 0.025 8.5E-07 53.9 2.7 26 224-249 28-53 (243)
345 3sop_A Neuronal-specific septi 93.9 0.029 1E-06 54.5 3.2 23 226-248 4-26 (270)
346 2pze_A Cystic fibrosis transme 93.9 0.024 8.2E-07 53.6 2.5 26 224-249 34-59 (229)
347 3fvq_A Fe(3+) IONS import ATP- 93.8 0.027 9.1E-07 57.2 3.0 23 226-248 32-54 (359)
348 1z2a_A RAS-related protein RAB 93.8 0.031 1.1E-06 48.3 3.1 23 225-247 6-28 (168)
349 1bif_A 6-phosphofructo-2-kinas 93.8 0.015 5.2E-07 60.9 1.2 26 224-249 39-64 (469)
350 1ji0_A ABC transporter; ATP bi 93.8 0.025 8.6E-07 53.9 2.5 27 225-251 33-59 (240)
351 2ghi_A Transport protein; mult 93.8 0.028 9.6E-07 54.2 2.9 27 223-249 45-71 (260)
352 2d2e_A SUFC protein; ABC-ATPas 93.8 0.029 9.8E-07 53.8 2.9 23 225-247 30-52 (250)
353 2h57_A ADP-ribosylation factor 93.8 0.032 1.1E-06 49.9 3.1 22 226-247 23-44 (190)
354 2ff7_A Alpha-hemolysin translo 93.8 0.025 8.7E-07 54.1 2.5 28 224-251 35-62 (247)
355 2qi9_C Vitamin B12 import ATP- 93.8 0.038 1.3E-06 53.0 3.8 31 225-256 27-57 (249)
356 3gfo_A Cobalt import ATP-bindi 93.8 0.025 8.6E-07 55.2 2.5 25 225-249 35-59 (275)
357 2fh5_B SR-beta, signal recogni 93.7 0.085 2.9E-06 48.1 6.0 23 225-247 8-30 (214)
358 2olj_A Amino acid ABC transpor 93.7 0.029 9.8E-07 54.4 2.8 27 224-250 50-76 (263)
359 4edh_A DTMP kinase, thymidylat 93.7 0.024 8.3E-07 53.1 2.2 31 226-256 8-41 (213)
360 2ixe_A Antigen peptide transpo 93.7 0.029 9.9E-07 54.5 2.9 27 224-250 45-71 (271)
361 2gza_A Type IV secretion syste 93.6 0.037 1.3E-06 56.0 3.6 26 224-249 175-200 (361)
362 1ek0_A Protein (GTP-binding pr 93.6 0.038 1.3E-06 47.8 3.2 22 226-247 5-26 (170)
363 2zu0_C Probable ATP-dependent 93.6 0.035 1.2E-06 53.8 3.2 25 224-248 46-70 (267)
364 2wji_A Ferrous iron transport 93.6 0.032 1.1E-06 49.0 2.7 22 226-247 5-26 (165)
365 2ihy_A ABC transporter, ATP-bi 93.6 0.028 9.6E-07 54.9 2.5 27 225-251 48-74 (279)
366 1z47_A CYSA, putative ABC-tran 93.6 0.032 1.1E-06 56.5 3.0 25 225-249 42-66 (355)
367 4g1u_C Hemin import ATP-bindin 93.5 0.028 9.5E-07 54.5 2.3 26 225-250 38-63 (266)
368 2it1_A 362AA long hypothetical 93.5 0.034 1.2E-06 56.5 3.0 24 226-249 31-54 (362)
369 2nq2_C Hypothetical ABC transp 93.5 0.03 1E-06 53.9 2.4 25 225-249 32-56 (253)
370 3rlf_A Maltose/maltodextrin im 93.5 0.038 1.3E-06 56.5 3.3 24 226-249 31-54 (381)
371 1g16_A RAS-related protein SEC 93.5 0.04 1.4E-06 47.7 3.1 22 226-247 5-26 (170)
372 1z0j_A RAB-22, RAS-related pro 93.5 0.041 1.4E-06 47.7 3.2 23 226-248 8-30 (170)
373 1vpl_A ABC transporter, ATP-bi 93.5 0.034 1.2E-06 53.6 2.8 26 225-250 42-67 (256)
374 2yyz_A Sugar ABC transporter, 93.5 0.038 1.3E-06 56.0 3.3 24 226-249 31-54 (359)
375 3v9p_A DTMP kinase, thymidylat 93.5 0.04 1.4E-06 52.3 3.2 30 226-255 27-63 (227)
376 2yz2_A Putative ABC transporte 93.4 0.034 1.2E-06 53.8 2.9 26 224-249 33-58 (266)
377 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.042 1.4E-06 48.1 3.2 22 226-247 9-30 (177)
378 2nzj_A GTP-binding protein REM 93.4 0.035 1.2E-06 48.5 2.7 22 226-247 6-27 (175)
379 2zej_A Dardarin, leucine-rich 93.4 0.029 1E-06 50.2 2.1 22 226-247 4-25 (184)
380 1v43_A Sugar-binding transport 93.4 0.036 1.2E-06 56.5 3.0 24 225-248 38-61 (372)
381 1g29_1 MALK, maltose transport 93.4 0.036 1.2E-06 56.5 3.0 24 225-248 30-53 (372)
382 2www_A Methylmalonic aciduria 93.4 0.15 5E-06 51.3 7.5 24 225-248 75-98 (349)
383 1z08_A RAS-related protein RAB 93.4 0.044 1.5E-06 47.6 3.2 22 226-247 8-29 (170)
384 3tmk_A Thymidylate kinase; pho 93.3 0.053 1.8E-06 51.0 3.9 28 226-253 7-34 (216)
385 1ky3_A GTP-binding protein YPT 93.3 0.045 1.5E-06 48.0 3.2 23 225-247 9-31 (182)
386 1ls1_A Signal recognition part 93.3 0.12 4.1E-06 50.7 6.6 35 224-258 98-135 (295)
387 2pjz_A Hypothetical protein ST 93.3 0.034 1.2E-06 53.9 2.5 24 225-248 31-54 (263)
388 2j9r_A Thymidine kinase; TK1, 93.3 0.14 4.9E-06 48.0 6.7 30 227-256 31-63 (214)
389 1r2q_A RAS-related protein RAB 93.3 0.047 1.6E-06 47.2 3.2 21 226-246 8-28 (170)
390 1g8f_A Sulfate adenylyltransfe 93.3 0.043 1.5E-06 58.2 3.4 26 225-250 396-421 (511)
391 2f1r_A Molybdopterin-guanine d 93.2 0.026 8.8E-07 51.1 1.4 24 226-249 4-27 (171)
392 2wjg_A FEOB, ferrous iron tran 93.2 0.043 1.5E-06 48.8 2.9 22 226-247 9-30 (188)
393 3d31_A Sulfate/molybdate ABC t 93.2 0.035 1.2E-06 56.1 2.5 25 225-249 27-51 (348)
394 3cr8_A Sulfate adenylyltranfer 93.2 0.034 1.2E-06 59.7 2.5 33 225-257 370-406 (552)
395 2obl_A ESCN; ATPase, hydrolase 93.1 0.065 2.2E-06 54.0 4.5 28 226-253 73-100 (347)
396 1w36_D RECD, exodeoxyribonucle 93.1 0.039 1.3E-06 59.8 3.0 23 225-247 165-187 (608)
397 2hxs_A RAB-26, RAS-related pro 93.1 0.05 1.7E-06 47.7 3.2 21 226-246 8-28 (178)
398 2y8e_A RAB-protein 6, GH09086P 93.1 0.05 1.7E-06 47.6 3.1 21 226-246 16-36 (179)
399 3bc1_A RAS-related protein RAB 93.1 0.05 1.7E-06 48.2 3.2 22 225-246 12-33 (195)
400 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.046 1.6E-06 48.1 2.8 23 226-248 25-47 (149)
401 3q85_A GTP-binding protein REM 93.0 0.05 1.7E-06 47.2 3.0 21 226-246 4-24 (169)
402 3p32_A Probable GTPase RV1496/ 93.0 0.064 2.2E-06 54.0 4.2 32 225-256 80-114 (355)
403 3q72_A GTP-binding protein RAD 93.0 0.047 1.6E-06 47.2 2.8 21 226-246 4-24 (166)
404 1upt_A ARL1, ADP-ribosylation 92.9 0.071 2.4E-06 46.2 3.9 23 224-246 7-29 (171)
405 2atv_A RERG, RAS-like estrogen 92.9 0.063 2.2E-06 48.3 3.6 24 224-247 28-51 (196)
406 3gd7_A Fusion complex of cysti 92.9 0.047 1.6E-06 56.0 3.0 25 224-248 47-71 (390)
407 2wjy_A Regulator of nonsense t 92.9 0.041 1.4E-06 61.6 2.8 32 226-257 373-408 (800)
408 4dsu_A GTPase KRAS, isoform 2B 92.9 0.056 1.9E-06 47.7 3.2 22 226-247 6-27 (189)
409 1z0f_A RAB14, member RAS oncog 92.9 0.057 2E-06 47.2 3.2 23 225-247 16-38 (179)
410 3clv_A RAB5 protein, putative; 92.9 0.056 1.9E-06 48.1 3.2 23 225-247 8-30 (208)
411 3vkw_A Replicase large subunit 92.9 0.097 3.3E-06 54.5 5.3 24 224-247 161-184 (446)
412 1svi_A GTP-binding protein YSX 92.8 0.074 2.5E-06 47.5 3.9 24 224-247 23-46 (195)
413 2fn4_A P23, RAS-related protei 92.8 0.057 1.9E-06 47.3 3.1 23 225-247 10-32 (181)
414 1tf7_A KAIC; homohexamer, hexa 92.8 0.051 1.7E-06 57.7 3.3 25 220-244 35-59 (525)
415 2gj8_A MNME, tRNA modification 92.8 0.051 1.7E-06 48.2 2.8 22 226-247 6-27 (172)
416 2lkc_A Translation initiation 92.8 0.066 2.2E-06 46.9 3.5 23 224-246 8-30 (178)
417 3lv8_A DTMP kinase, thymidylat 92.8 0.047 1.6E-06 52.0 2.7 24 225-248 28-51 (236)
418 1tq4_A IIGP1, interferon-induc 92.8 0.076 2.6E-06 54.9 4.5 23 226-248 71-93 (413)
419 2bbs_A Cystic fibrosis transme 92.8 0.047 1.6E-06 53.6 2.8 25 224-248 64-88 (290)
420 1moz_A ARL1, ADP-ribosylation 92.8 0.072 2.5E-06 46.9 3.8 24 223-246 17-40 (183)
421 1oxx_K GLCV, glucose, ABC tran 92.8 0.034 1.2E-06 56.2 1.8 24 225-248 32-55 (353)
422 1m7b_A RND3/RHOE small GTP-bin 92.8 0.058 2E-06 48.1 3.1 23 225-247 8-30 (184)
423 2bme_A RAB4A, RAS-related prot 92.8 0.058 2E-06 47.7 3.1 23 225-247 11-33 (186)
424 2oil_A CATX-8, RAS-related pro 92.8 0.059 2E-06 48.2 3.2 23 225-247 26-48 (193)
425 2efe_B Small GTP-binding prote 92.8 0.061 2.1E-06 47.3 3.2 23 225-247 13-35 (181)
426 2dpy_A FLII, flagellum-specifi 92.7 0.079 2.7E-06 55.1 4.5 27 226-252 159-185 (438)
427 3con_A GTPase NRAS; structural 92.7 0.062 2.1E-06 47.9 3.2 22 226-247 23-44 (190)
428 2cxx_A Probable GTP-binding pr 92.6 0.054 1.8E-06 48.0 2.7 22 226-247 3-24 (190)
429 2orv_A Thymidine kinase; TP4A 92.6 0.59 2E-05 44.4 9.9 103 226-345 21-150 (234)
430 3b1v_A Ferrous iron uptake tra 92.6 0.23 8E-06 48.0 7.3 22 226-247 5-26 (272)
431 3tw8_B RAS-related protein RAB 92.6 0.06 2E-06 47.1 2.9 21 226-246 11-31 (181)
432 1yrb_A ATP(GTP)binding protein 92.5 0.097 3.3E-06 49.4 4.4 34 225-258 15-50 (262)
433 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.063 2.1E-06 56.2 3.3 26 223-248 137-162 (460)
434 2g6b_A RAS-related protein RAB 92.4 0.071 2.4E-06 46.8 3.2 23 225-247 11-33 (180)
435 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.071 2.4E-06 47.0 3.2 22 226-247 7-28 (186)
436 2gf9_A RAS-related protein RAB 92.4 0.07 2.4E-06 47.6 3.2 22 226-247 24-45 (189)
437 3kkq_A RAS-related protein M-R 92.4 0.071 2.4E-06 47.1 3.2 23 225-247 19-41 (183)
438 1m2o_B GTP-binding protein SAR 92.3 0.071 2.4E-06 48.0 3.1 21 226-246 25-45 (190)
439 1ko7_A HPR kinase/phosphatase; 92.3 0.097 3.3E-06 52.1 4.3 28 224-252 144-171 (314)
440 1pui_A ENGB, probable GTP-bind 92.3 0.035 1.2E-06 50.5 1.0 25 224-248 26-50 (210)
441 4tmk_A Protein (thymidylate ki 92.3 0.061 2.1E-06 50.4 2.7 23 226-248 5-27 (213)
442 3k53_A Ferrous iron transport 92.3 0.069 2.4E-06 51.3 3.1 23 225-247 4-26 (271)
443 3pqc_A Probable GTP-binding pr 92.3 0.083 2.8E-06 46.9 3.5 23 225-247 24-46 (195)
444 2wsm_A Hydrogenase expression/ 92.3 0.071 2.4E-06 49.0 3.1 25 225-249 31-55 (221)
445 2qm8_A GTPase/ATPase; G protei 92.2 0.06 2.1E-06 53.9 2.8 24 225-248 56-79 (337)
446 2xzl_A ATP-dependent helicase 92.2 0.063 2.2E-06 60.1 3.2 33 226-258 377-413 (802)
447 3nh6_A ATP-binding cassette SU 92.2 0.048 1.6E-06 54.1 2.0 28 222-249 78-105 (306)
448 2b6h_A ADP-ribosylation factor 92.2 0.095 3.3E-06 47.2 3.9 23 224-246 29-51 (192)
449 3bwd_D RAC-like GTP-binding pr 92.2 0.079 2.7E-06 46.5 3.2 23 225-247 9-31 (182)
450 3ld9_A DTMP kinase, thymidylat 92.2 0.066 2.3E-06 50.6 2.8 26 225-250 22-47 (223)
451 3dz8_A RAS-related protein RAB 92.1 0.078 2.7E-06 47.5 3.1 23 226-248 25-47 (191)
452 3c5c_A RAS-like protein 12; GD 92.1 0.082 2.8E-06 47.4 3.2 22 226-247 23-44 (187)
453 1knx_A Probable HPR(Ser) kinas 92.1 0.099 3.4E-06 51.9 4.0 29 224-253 147-175 (312)
454 1vg8_A RAS-related protein RAB 92.1 0.082 2.8E-06 47.7 3.2 23 225-247 9-31 (207)
455 3t5g_A GTP-binding protein RHE 92.0 0.082 2.8E-06 46.5 3.1 22 225-246 7-28 (181)
456 1z06_A RAS-related protein RAB 92.0 0.084 2.9E-06 47.1 3.2 21 226-246 22-42 (189)
457 1zd9_A ADP-ribosylation factor 92.0 0.084 2.9E-06 47.2 3.2 21 226-246 24-44 (188)
458 1zbd_A Rabphilin-3A; G protein 92.0 0.076 2.6E-06 47.9 2.9 23 225-247 9-31 (203)
459 4ag6_A VIRB4 ATPase, type IV s 92.0 0.14 4.8E-06 51.9 5.2 34 224-257 35-71 (392)
460 2bcg_Y Protein YP2, GTP-bindin 92.0 0.083 2.8E-06 47.8 3.1 23 225-247 9-31 (206)
461 3ihw_A Centg3; RAS, centaurin, 92.0 0.086 2.9E-06 47.2 3.2 22 226-247 22-43 (184)
462 2vp4_A Deoxynucleoside kinase; 91.9 0.096 3.3E-06 49.1 3.6 29 226-255 22-50 (230)
463 2iwr_A Centaurin gamma 1; ANK 91.9 0.064 2.2E-06 47.1 2.3 22 226-247 9-30 (178)
464 2a5j_A RAS-related protein RAB 91.9 0.087 3E-06 47.2 3.2 22 226-247 23-44 (191)
465 3reg_A RHO-like small GTPase; 91.9 0.088 3E-06 47.2 3.2 22 226-247 25-46 (194)
466 2rcn_A Probable GTPase ENGC; Y 91.8 0.073 2.5E-06 53.9 2.8 25 225-249 216-240 (358)
467 3cph_A RAS-related protein SEC 91.8 0.089 3.1E-06 47.6 3.2 23 225-247 21-43 (213)
468 3oes_A GTPase rhebl1; small GT 91.8 0.089 3E-06 47.6 3.1 23 225-247 25-47 (201)
469 1u0l_A Probable GTPase ENGC; p 91.8 0.072 2.5E-06 52.3 2.7 26 225-250 170-195 (301)
470 2gks_A Bifunctional SAT/APS ki 91.7 0.11 3.9E-06 55.5 4.3 32 225-256 373-407 (546)
471 1ksh_A ARF-like protein 2; sma 91.7 0.083 2.8E-06 46.8 2.7 24 224-247 18-41 (186)
472 1gwn_A RHO-related GTP-binding 91.6 0.094 3.2E-06 48.0 3.1 22 226-247 30-51 (205)
473 3lxx_A GTPase IMAP family memb 91.6 0.086 2.9E-06 49.4 2.9 23 225-247 30-52 (239)
474 2qag_B Septin-6, protein NEDD5 91.6 0.093 3.2E-06 54.4 3.3 21 227-247 45-65 (427)
475 4f4c_A Multidrug resistance pr 91.5 0.2 6.8E-06 59.2 6.5 26 223-248 1104-1129(1321)
476 1zj6_A ADP-ribosylation factor 91.5 0.12 4.1E-06 45.9 3.7 23 224-246 16-38 (187)
477 2hf9_A Probable hydrogenase ni 91.4 0.1 3.5E-06 48.1 3.1 25 224-248 38-62 (226)
478 2h17_A ADP-ribosylation factor 91.4 0.089 3.1E-06 46.6 2.6 22 226-247 23-44 (181)
479 2ew1_A RAS-related protein RAB 91.4 0.1 3.6E-06 47.6 3.1 22 226-247 28-49 (201)
480 2fu5_C RAS-related protein RAB 91.4 0.063 2.1E-06 47.4 1.5 22 225-246 9-30 (183)
481 1f6b_A SAR1; gtpases, N-termin 91.3 0.091 3.1E-06 47.7 2.6 22 225-246 26-47 (198)
482 2yv5_A YJEQ protein; hydrolase 91.2 0.12 3.9E-06 51.0 3.5 24 225-249 166-189 (302)
483 1qde_A EIF4A, translation init 91.2 0.13 4.6E-06 47.2 3.8 53 185-240 12-67 (224)
484 2atx_A Small GTP binding prote 91.2 0.11 3.9E-06 46.3 3.1 22 226-247 20-41 (194)
485 2qtf_A Protein HFLX, GTP-bindi 91.2 0.18 6E-06 51.1 4.9 22 226-247 181-202 (364)
486 3qks_A DNA double-strand break 91.2 0.12 4E-06 47.8 3.2 25 226-250 25-49 (203)
487 3t34_A Dynamin-related protein 91.1 0.82 2.8E-05 45.7 9.8 21 226-246 36-56 (360)
488 2o52_A RAS-related protein RAB 91.1 0.097 3.3E-06 47.4 2.6 22 225-246 26-47 (200)
489 2fv8_A H6, RHO-related GTP-bin 91.1 0.12 4E-06 47.1 3.1 23 225-247 26-48 (207)
490 2q3h_A RAS homolog gene family 91.0 0.1 3.6E-06 46.9 2.7 22 225-246 21-42 (201)
491 4hlc_A DTMP kinase, thymidylat 90.9 0.16 5.5E-06 47.1 4.0 29 227-255 5-35 (205)
492 2gco_A H9, RHO-related GTP-bin 90.9 0.13 4.3E-06 46.6 3.1 22 226-247 27-48 (201)
493 3ice_A Transcription terminati 90.8 0.2 6.8E-06 51.4 4.8 25 224-248 174-198 (422)
494 2cjw_A GTP-binding protein GEM 90.8 0.13 4.5E-06 46.4 3.2 21 226-246 8-28 (192)
495 2hup_A RAS-related protein RAB 90.8 0.13 4.5E-06 46.7 3.1 22 226-247 31-52 (201)
496 1qhl_A Protein (cell division 90.7 0.041 1.4E-06 52.1 -0.4 23 227-249 30-52 (227)
497 2j0v_A RAC-like GTP-binding pr 90.7 0.13 4.6E-06 46.6 3.1 22 226-247 11-32 (212)
498 2p67_A LAO/AO transport system 90.6 0.17 6E-06 50.5 4.2 25 224-248 56-80 (341)
499 2il1_A RAB12; G-protein, GDP, 90.6 0.13 4.3E-06 46.2 2.9 21 226-246 28-48 (192)
500 1dek_A Deoxynucleoside monopho 90.6 0.13 4.3E-06 49.2 2.9 27 226-252 3-29 (241)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=388.98 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=189.4
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...|.++|+||+|++++|++|++.+..|+++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ----C--hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 ----D--DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ----~--~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ +..++.+|.. ..+||||||||||++++.+.. ..++++||++|||+.+ ..+++||+|||+
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~---~~~V~vIaATNr 296 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET---SKNIKIIMATNR 296 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC---CCCEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC---CCCeEEEeccCC
Confidence 3 4558888854 468999999999999876532 2357899999999987 578899999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+.|||||+||||||++|+||+|+.++|.+|++.++...+..-..+++.||..+.|||||||.++|..|..
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987766555678999999999999999999987644
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-46 Score=390.65 Aligned_cols=211 Identities=18% Similarity=0.250 Sum_probs=188.8
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...++++|+||+|++++|++|.+.+..|+++|+.|.+.|.++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C------hHHHHHHHH--hhcCCcEEEEecccccccCcccc---------cchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLL--QTTSKSVILIEDLDRFLVEKPAA---------VSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~--~~~~~sII~IDEiD~l~~~~~~~---------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ +..++.+|. +..+||||||||+|++++.+... .++++||+.|||+.+ .++++||+|||+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~---~~~ViVIaaTNr 329 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS---DDRVKVLAATNR 329 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS---SCSSEEEEECSS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC---CCCEEEEEeCCC
Confidence 3 345788885 45689999999999998766322 347889999999987 578899999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+.|||||+||||||++|+||+|+.++|.+||+.++......-..+++.||..+.|||||||.++|..|..
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665555578999999999999999999987644
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-46 Score=388.05 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=188.9
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...+.++|+||+|++++|++|++.+..|+++|++|...|.+|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ----C--hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 ----D--DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ----~--~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ +..++.+|.. ..+||||||||||+++..+.. ..++++||++|||+.+ .++++||+|||+
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~---~~~ViVIaATNr 330 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD---RGDVKVIMATNK 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC---SSSEEEEEEESC
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC---CCCEEEEEeCCC
Confidence 3 3457888854 468999999999999986632 2457899999999877 678999999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+.|||||+||||||++|+|++|+.++|.+|++.|+...+..-..+++.||..+.|||||||.++|..|..
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665555678999999999999999999987644
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-45 Score=384.30 Aligned_cols=209 Identities=23% Similarity=0.303 Sum_probs=187.7
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
.+.++|+||+|++++|++|.+.+..|+++|+.|.++|.++++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred -----hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 263 -----DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 -----~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
+..++.+|.. ..+||||||||||++++.+.. ..++++||++|||+.+ .++++||+|||+|+
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~---~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN---LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC---TTSSEEEEEESSTT
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC---CCCeEEEEecCCch
Confidence 3447788854 468999999999999876532 2357889999999987 57899999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
.|||||+||||||++|+||+|+.++|.+||+.|+......-..+++.++..|.|||||||.++|..|..
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987666555678999999999999999999986643
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-44 Score=377.44 Aligned_cols=211 Identities=24% Similarity=0.318 Sum_probs=188.3
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...+.++|+||+|++++|+.|.+.+..|+++|++|..+|.+|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred C------hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ +..++.+|.. ..+||||||||+|+++..+.. .+++++||++|||+.+ ..+++||+|||+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~---~~~v~vI~aTN~ 320 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ---STNVKVIMATNR 320 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS---SCSEEEEEEESC
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC---CCCEEEEEecCC
Confidence 3 3458888854 468999999999999876522 2458999999999987 577999999999
Q ss_pred CccCcccccCCCceeEEEEcC-CCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFP-LCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~-~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+.|||||+||||||++|+|| +|+.++|..|++.++...+.....+++.|+..|.|||||||.++|+.|..
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred hhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 89999999999999987665555678999999999999999999986643
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=377.19 Aligned_cols=211 Identities=21% Similarity=0.230 Sum_probs=189.0
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...|.++|+||+|++++|++|++.+..|+.+|+.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C------hHHHHHHHHh--hcCCcEEEEecccccccCcccc---------cchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAA---------VSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~---------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ +..++.+|.. ..+||||||||+|+++..+... .+++++|++|||... .++++||+|||+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~---~~~ViVIaATNr 357 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP---RGNIKVMFATNR 357 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC---TTTEEEEEECSC
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC---CCcEEEEeCCCC
Confidence 3 3458888854 4689999999999999765322 357889999999876 678899999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|+.|||||+||||||++|+|++|+.++|.+||+.++.........+++.|+..+.|||||||.++|..|..
T Consensus 358 pd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp TTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred cccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987766655678999999999999999999987644
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-43 Score=391.44 Aligned_cols=271 Identities=20% Similarity=0.258 Sum_probs=176.4
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc-
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV- 260 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~- 260 (480)
...+.++|++|+|++++|+.|.+.+..++++++.|.+.|..+++|+|||||||||||++|+|+|++++.+|+.++.+++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred ---CC--hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 261 ---AD--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 261 ---~~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
.+ +..++.+|..+ .+||||||||||++++.|+. .+.+++||++|||+.+ ..+++||+|||+
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~---~~~V~vi~aTN~ 625 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST---KKNVFIIGATNR 625 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS---SSSEEEECC-CC
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC---CCCEEEEEeCCC
Confidence 33 56699999655 58999999999999976532 2458999999999987 567888899999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHH
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSV 404 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~ 404 (480)
|+.||||++||||||++|+||+|+.++|.+|++.++...+.....+++.|++.++|||||||.++|+.|.. .++++.
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~---~a~r~~ 702 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK---LAIRES 702 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHH---HHHHHH
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999999999999999999987666555678899999999999999999987644 445555
Q ss_pred HHHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcC-cccccccc
Q 011664 405 ITALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQS-FDLAAAEN 478 (480)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~-~~~~~~~~ 478 (480)
++.......... . .+ ...+ .......++|+++||++| +++++|||| .++..||+
T Consensus 703 ~~~~~~~~~~~~-------~---~~---~~~~--~~~~~~~~~i~~~df~~a-----l~~~~pSvs~~~l~~y~~ 757 (806)
T 3cf2_A 703 IESEIRRERERQ-------T---NP---SAME--VEEDDPVPEIRRDHFEEA-----MRFARRSVSDNDIRKYEM 757 (806)
T ss_dssp HC--------------------------------------CCC----CCTTT-----C---------------CC
T ss_pred HHhhhhhhhhhc-------c---Cc---cccc--cccccccCccCHHHHHHH-----HHhCCCCCCHHHHHHHHH
Confidence 433222111000 0 00 0000 011112377999999999 999999999 45566664
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.5e-39 Score=357.65 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=186.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
+.++|+||+|.+++|++|++.+..++++|+.|..+|..+|+|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred -C--hHHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 262 -D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 -~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+ +..++.+|..+ .+||||||||||.+++.++.. ..+++|+..|||+.+ ..+++||+|||+|+.||+
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~---~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG---GGCEEEEEECSSTTTSCT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc---cCCEEEEEecCChhhcCH
Confidence 3 34588888655 589999999999999865432 457899999999977 467889999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
||+||||||++|+++.|+.++|.+|++.++.........++..++..|.||+++||..+|..+..
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987666666688999999999999999999987644
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=307.29 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=211.3
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeCCCcCC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDLSRVAD 262 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~s~~~~ 262 (480)
.++++|++|+|++++|+.|.+.+..+++.++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 35789999999999999999999999999999875 35567899999999999999999999999 89999999887643
Q ss_pred ------hHHHHHHHHh--hcCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 263 ------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 263 ------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
+..++.+|.. ..+|+||||||||.+++.+... ..+++|+..||++... ..+++||+|||+|+.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--NDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--CTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--CCCEEEEEecCCcccC
Confidence 4457777754 3579999999999998765432 3467899999998642 4678889999999999
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc-hhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHH
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF-PQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITA 407 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~-~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~ 407 (480)
|++++| ||+..+++++|+.++|.+|++.++...+..+. .+++.|+..+.|||++||..+|..+...+.+ +....
T Consensus 163 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r---~~~~~ 237 (322)
T 1xwi_A 163 DSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR---KVQSA 237 (322)
T ss_dssp CHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHH---HHHHC
T ss_pred CHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---HHHhh
Confidence 999999 99999999999999999999999987665543 4678999999999999999999887665543 33221
Q ss_pred HHh---cCCCC-c-ccccccccccCCCCCCCCC-----CCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-ccccc
Q 011664 408 LQT---DGEGR-G-AANAGRRLDKSGSKKSTDA-----DSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAAA 476 (480)
Q Consensus 408 ~~~---~~~~~-~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~~ 476 (480)
... .+... . .......+..|...+.+.. +. +.+.+..++|+++||++| ++.++||+|. |+..|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~df~~a-----l~~~~ps~~~~~~~~~ 311 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDV-PGDKLLEPVVSMSDMLRS-----LSNTKPTVNEHDLLKL 311 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGS-CGGGBCCCCBCHHHHHHH-----HHTCCCSCCHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhcccccc-ccccccCCCcCHHHHHHH-----HHhCCCCCCHHHHHHH
Confidence 000 00000 0 0001112233333322211 11 122344578999999999 9999999995 44555
Q ss_pred c
Q 011664 477 E 477 (480)
Q Consensus 477 ~ 477 (480)
+
T Consensus 312 ~ 312 (322)
T 1xwi_A 312 K 312 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=294.57 Aligned_cols=248 Identities=19% Similarity=0.270 Sum_probs=189.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
+.++|++|+|.+++|+.|.+.+..++.+++.|+.++...++|++|+||||||||+|++++|++++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred ----hHHHHHHHHhh--cCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 263 ----DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 263 ----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
...+..+|... ..|+++|+||+|.++..+.. ...+++++..|+|... ....+++++||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~---~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA---RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS---TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc---cCCEEEEeecCChhhCCH
Confidence 23466777653 57999999999998754321 2346788999998866 466788889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCC---CCCchhHHHHHHhC--CCCCHHHHHHHHHHhhhcHHHHHHHHH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKD---HKLFPQVEEIFQNG--SSLSPAEIGELMIANRNSPSRALKSVI 405 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~---~~l~~~i~~l~~~~--~g~s~adI~~ll~~a~~~~~~al~~~i 405 (480)
|++||||||++|++++|+.++|.+|++.++.... .....+++.++..+ +|||||||..+|+.+.. .++++.+
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~---~a~~~~~ 238 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI---CALRQEM 238 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH---HHHHHHC
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999999999999986421 22344678898865 49999999999987644 3333322
Q ss_pred HHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc
Q 011664 406 TALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD 472 (480)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~ 472 (480)
..... . . .. ....|+++||++| ++.++||++..
T Consensus 239 ~~~~~-----------------------~-~--~~---~~~~i~~~df~~a-----l~~~~ps~~~~ 271 (274)
T 2x8a_A 239 ARQKS-----------------------G-N--EK---GELKVSHKHFEEA-----FKKVRSSISKK 271 (274)
T ss_dssp ----------------------------------------CCBCHHHHHHH-----HTTCCCCC---
T ss_pred hhccc-----------------------c-c--cc---cCCeecHHHHHHH-----HHHhcCCCChh
Confidence 11000 0 0 00 1146999999999 89999998854
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2e-35 Score=296.11 Aligned_cols=268 Identities=19% Similarity=0.269 Sum_probs=207.0
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC--
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA-- 261 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~-- 261 (480)
.++.+|++|+|.+++|+.|.+.+..++..++.|...|..+++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999976653
Q ss_pred ----ChHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 262 ----DDADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 262 ----~~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
.+..++.+|..+ ..|+||||||+|.+...++. ...+++||..||++.. ..+++||+|||+++
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST---KKNVFIIGATNRPD 165 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT---TSSEEEEEEESCGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC---CCCEEEEEecCCcc
Confidence 234467777654 57899999999998764321 2346889999998865 46788999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
.||++++|||||+..|++++|+.++|.+|++.++...+.....+++.++..+.||+++||.++|..+... ++++.+.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~---a~~~~~~ 242 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL---AIRESIE 242 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999999999999999999876554455678899999999999999999876443 3333332
Q ss_pred HHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc-ccccc
Q 011664 407 ALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD-LAAAE 477 (480)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~-~~~~~ 477 (480)
.......... ... ...+. ......++|+++||++| ++.++||++.+ ...||
T Consensus 243 ~~~~~~~~~~---------~~~----~~~~~--~~~~~~~~v~~~~~~~a-----l~~~~~s~~~~~~~~~~ 294 (301)
T 3cf0_A 243 SEIRRERERQ---------TNP----SAMEV--EEDDPVPEIRRDHFEEA-----MRFARRSVSDNDIRKYE 294 (301)
T ss_dssp HHC-----------------------------------CCCBCHHHHHHH-----HTTCCCSSCHHHHHHHH
T ss_pred hhhhhhhhcc---------ccc----ccccc--cccccCCccCHHHHHHH-----HHHcCCCCCHHHHHHHH
Confidence 2111000000 000 00000 00011257999999999 99999999953 34443
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.6e-36 Score=301.36 Aligned_cols=281 Identities=22% Similarity=0.259 Sum_probs=212.2
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...++++|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3457789999999999999999999999999999887 445678999999999999999999999999999999986543
Q ss_pred ----C--hHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 262 ----D--DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 262 ----~--~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+ +..++.+|.. ...|+||||||||.+...+.. ....++++..|+++... ..+++||+|||.|+.
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQGVLVLGATNIPWQ 166 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--CCCEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--CCceEEEEecCChhh
Confidence 2 2346666644 457899999999999875532 23468899999998642 457888899999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc-hhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF-PQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~-~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
||++++| ||+..+++++|+.++|.+|++.++......+. .+++.|+..+.||+++||..+|..+...+.+.+...+
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~- 243 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT- 243 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE-
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 9999999 99999999999999999999999987665544 4678999999999999999999887765554433221
Q ss_pred HHHhcCCCCcccccccccccCCCCCCCC-----CCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-cccccc
Q 011664 407 ALQTDGEGRGAANAGRRLDKSGSKKSTD-----ADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAAAE 477 (480)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~~~ 477 (480)
... .........+.+..|.+...+. .+. ..+.+..++|+++||++| ++.++||++. +...|+
T Consensus 244 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~it~~df~~a-----l~~~~ps~~~~~~~~~~ 311 (322)
T 3eie_A 244 --HFK-DVSTEDDETRKLTPCSPGDDGAIEMSWTDI-EADELKEPDLTIKDFLKA-----IKSTRPTVNEDDLLKQE 311 (322)
T ss_dssp --EEE-ECC----CCCCEEECCSSCTTEEEEEGGGS-CSSCBCCCCCCHHHHHHH-----HHHSCCSSCTTHHHHHH
T ss_pred --hhh-hhcccccccccccccccccccccccccccc-ccccccCCCCCHHHHHHH-----HHhcCCCCCHHHHHHHH
Confidence 111 0111111223344444433221 111 223344588999999999 8999999985 444444
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1e-34 Score=306.42 Aligned_cols=281 Identities=20% Similarity=0.228 Sum_probs=209.3
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeCCCcC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDLSRVA 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~s~~~ 261 (480)
..++++|++|+|++++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999999998875 34567899999999999999999999999 8999999988764
Q ss_pred C------hHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 262 D------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 262 ~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
+ +..++.+|.. ...|+||||||||.+++.+.. ...+++||..|+++... ..+++||+|||.|+.
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--NDGILVLGATNIPWV 283 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC--CSSCEEEEEESCGGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC--CCCEEEEecCCCccc
Confidence 3 2346677754 357999999999999765432 23467899999987542 467889999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCC-chhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHH
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKL-FPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVIT 406 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l-~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~ 406 (480)
||++++| ||+..+++++|+.++|..|++.++...+..+ ..+++.|+..+.|||++||..+|..+...+.+ +++.
T Consensus 284 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r---~~~~ 358 (444)
T 2zan_A 284 LDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR---KVQS 358 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH---HHHH
T ss_pred cCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---HHHh
Confidence 9999999 9999999999999999999999997665543 34678999999999999999999877665544 3332
Q ss_pred HHH---hcCCCCc--ccccccccccCCCCCCCC-----CCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-cccc
Q 011664 407 ALQ---TDGEGRG--AANAGRRLDKSGSKKSTD-----ADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAA 475 (480)
Q Consensus 407 ~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~ 475 (480)
... ..+.... .......+.+|.++..++ .+. +.+.+..++|+++||.+| +++++||||. |+..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~df~~a-----~~~~~ps~~~~~~~~ 432 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDV-PGDKLLEPVVSMWDMLRS-----LSSTKPTVNEQDLLK 432 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTS-CTTCBCCCCEEHHHHHHH-----HHTCCCSCCHHHHHH
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccC-chhhccCCccCHHHHHHH-----HHhCCCCCCHHHHHH
Confidence 100 0000000 001112233444333221 111 233455678999999999 9999999995 3444
Q ss_pred cc
Q 011664 476 AE 477 (480)
Q Consensus 476 ~~ 477 (480)
|+
T Consensus 433 ~~ 434 (444)
T 2zan_A 433 LK 434 (444)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.3e-34 Score=295.22 Aligned_cols=280 Identities=22% Similarity=0.265 Sum_probs=203.8
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC-
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA- 261 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~- 261 (480)
..++.+|++|+|++++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 346789999999999999999999999999999987 556778999999999999999999999999999999976543
Q ss_pred ---C--hHHHHHHHHhh--cCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 262 ---D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 262 ---~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
+ +..++.+|..+ ..|+||||||||.+.+.+.. ....++|+..|+++... ..+++||+|||.++.|
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQGVLVLGATNIPWQL 200 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----CCEEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--CCCeEEEeecCCcccC
Confidence 2 34466777544 48999999999999865432 23468899999987642 4568888999999999
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc-hhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHH
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF-PQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITA 407 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~-~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~ 407 (480)
|++++| ||+..+++++|+.++|..|++.++...+..+. .+++.|+..+.||+++||..+|..+...+ +++....
T Consensus 201 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a---~~~~~~~ 275 (355)
T 2qp9_X 201 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP---IRKIQSA 275 (355)
T ss_dssp CHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH---HHHHHHC
T ss_pred CHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HHHHHHh
Confidence 999999 99999999999999999999999987665443 46789999999999999999998765544 3333221
Q ss_pred HHhcCCCCcccccccccccCCCCCCCC-----CCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-cccccc
Q 011664 408 LQTDGEGRGAANAGRRLDKSGSKKSTD-----ADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAAAE 477 (480)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~~~ 477 (480)
.... ...+.........+|.+...+. .+. ..+.+..++|+++||.+| ++.++||++. ++..|+
T Consensus 276 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~df~~A-----l~~~~ps~~~~~~~~~~ 344 (355)
T 2qp9_X 276 THFK-DVSTEDDETRKLTPSSPGDDGAIEMSWTDI-EADELKEPDLTIKDFLKA-----IKSTRPTVNEDDLLKQE 344 (355)
T ss_dssp SEEE-ECCC-----CCEEEECTTSSSEEECCGGGS-CGGGBCCCCBCHHHHHHH-----HHHSCCSSCHHHHHHHH
T ss_pred hhhh-hhccccccccccCcCCccccchhhcccccc-cccccccCCccHHHHHHH-----HHHcCCCCCHHHHHHHH
Confidence 0000 0000000011222333222211 111 122334578999999999 9999999995 444444
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.98 E-value=2.2e-31 Score=262.82 Aligned_cols=211 Identities=22% Similarity=0.251 Sum_probs=180.3
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
...++.+|++|+|.+++++.|.+.+..++..++.|...|...++++||+||||||||++|+++|++++.+++.++++.+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred C------hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 262 D------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 262 ~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
+ ...+..+|.. ...|+||||||+|.+.+.+.. ...+..+++.+++... ..+.+||+|||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vI~ttn~ 165 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA---RGDVKIIGATNR 165 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS---SSSEEEEEECSC
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEeCCC
Confidence 3 2335555643 357899999999999764432 2446677788877655 467889999999
Q ss_pred CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 325 KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 325 ~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
++.+|++++|||||+..++++.|+.++|.+|++.++.........++..++..+.|++++||..+|..+..
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877665555678999999999999999999876543
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=7e-31 Score=256.09 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=170.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
.++.+|++|+|.+++|+.+.+.+. ++..++.|..+|...++|+||+||||||||++|+++|++++.+++.++++.+..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 467899999999999999998664 578888889999989999999999999999999999999999999999887643
Q ss_pred -----hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 263 -----DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 -----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
...++.+|..+ ..|+++||||+|.+...+.. ...+.+++..++++.. ..+++||+|||.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG---NEGIIVIAATNRPD 161 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS---SSCEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc---CCCEEEEEeeCCch
Confidence 34567777654 46899999999998765432 1356778999998765 56788999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
.+|++++|||||+..+++++|+.++|.+|++.++...+.....++..++..+.||+++||..+|..+.
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987654433445678888999999999999987653
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=8.4e-31 Score=277.80 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=177.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
+..+|++|+|.+++|+++.+.+. ++..+..|..+|...++|+||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56799999999999999998765 578889999999999999999999999999999999999999999999887642
Q ss_pred ----hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 263 ----DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 263 ----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
...++.+|..+ .+||||||||+|.+...++. ..++++|++.||++.. ..+++||+|||+++.
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~---~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS---KEGIIVMAATNRPDI 166 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG---GGTEEEEEEESCGGG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC---CCCEEEEEecCChhh
Confidence 34577777654 57999999999999875532 2457889999998865 467899999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
||++++||||||..|.+++|+.++|.+|++.++...+..-..++..++..+.|++++||.++|..+.
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987655443446788999999999999999997654
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=1.4e-31 Score=285.25 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=181.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
.+.+|++|+|.+.+++.|.+.+..++.+++.|..+|.++++++|||||||||||++|+++|++++.+|+.++++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred -C--hHHHHHHHHhh--cCCcEEEEecccccccCcccc------cchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 262 -D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAA------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 262 -~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+ ...++.+|..+ ..|+||||||||.+.+.+... ..++.|+..|++... ...++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~---~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT---TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc---CCceEEEEecCCccccCH
Confidence 3 23466777544 578999999999998755422 456789999998765 567889999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
+++|+|||+..|++++|+.++|.+|++.++.........++..++..+.||+++||..+|..+..
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877665555678999999999999999999976543
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=251.20 Aligned_cols=209 Identities=21% Similarity=0.318 Sum_probs=164.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
++++|++|+|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++.+.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 35789999999999999988665 578889999999999999999999999999999999999999999999887643
Q ss_pred ----hHHHHHHHHhh--cCCcEEEEecccccccCcc----------cccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 263 ----DADLKSLLLQT--TSKSVILIEDLDRFLVEKP----------AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 ----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~----------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
...++.+|..+ ..|+||||||+|.+...+. ....+..+++.+++... ...+++|+|||.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT---TDHVIVLASTNRAD 156 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT---TCCEEEEEEESCGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC---CCCEEEEecCCChh
Confidence 23456666544 4689999999999976442 22456788888888755 46788999999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH--HHHHHhCCCCCHHHHHHHHHHhhhcH
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV--EEIFQNGSSLSPAEIGELMIANRNSP 397 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i--~~l~~~~~g~s~adI~~ll~~a~~~~ 397 (480)
.+|++++|||||+..+++++|+.++|.+|++.++...+.....++ ..++..+.|++++||.++|..+...+
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987666555443 67888899999999999998765443
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=3e-30 Score=256.40 Aligned_cols=250 Identities=20% Similarity=0.236 Sum_probs=193.1
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
.++.+|++++|.+++++.+.+.+..+...++.|...+ .+++++||+||||||||++|+++|++++.+++.++++.+.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999999999999999888766 35679999999999999999999999999999999887643
Q ss_pred -----hHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 263 -----DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 263 -----~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
...++.+|.. ...|+||||||+|.+...+.. ....+.++..+++......+..++||+|||.++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 2335555543 357999999999999875432 233567888888876522235678889999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITAL 408 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~ 408 (480)
++++| ||+..+++++|+.++|..|++.++...+..+.+ .++.++..+.|++++||..+|..+...+.+.+....
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~--- 248 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ--- 248 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 99999 999999999999999999999998766655544 567899999999999999999877654433221100
Q ss_pred HhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc
Q 011664 409 QTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD 472 (480)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~ 472 (480)
. +.+ ... ..+.|+++||.++ ++.++||++.+
T Consensus 249 ~------------~~~-----------~~~-----~~~~i~~~d~~~a-----~~~~~~s~~~~ 279 (297)
T 3b9p_A 249 V------------KCL-----------DIS-----AMRAITEQDFHSS-----LKRIRRSVAPQ 279 (297)
T ss_dssp ----------------------------CC-----CCCCCCHHHHHHH-----TTSCCCSSCHH
T ss_pred c------------ccc-----------ccc-----ccCCcCHHHHHHH-----HHHcCCCCCHH
Confidence 0 000 000 1257999999999 88899998753
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=267.18 Aligned_cols=248 Identities=21% Similarity=0.286 Sum_probs=193.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++.+.+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 578999999999999999999999999999887765 45779999999999999999999999999999999887643
Q ss_pred ----hHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 263 ----DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 263 ----~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
...++.+|.. ...|+||||||||.+...+.. ...+++++..+++... .....++||+|||.++.+|+
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT-SSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----CCCCEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc-cCCCCEEEEEecCChhhCCH
Confidence 2335566643 357899999999999765432 2346788999998764 22456788899999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQ 409 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~ 409 (480)
+++| ||+..+++++|+.++|..++..++...+..+.+ .++.++..+.||+++||..+|..+...+.+.++.....
T Consensus 237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~-- 312 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA-- 312 (357)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC------
T ss_pred HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--
Confidence 9999 999999999999999999999998766655543 56889999999999999999988766554432211000
Q ss_pred hcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcc
Q 011664 410 TDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFD 472 (480)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~ 472 (480)
.. ..+ ..++|+++||.++ ++..+||++.+
T Consensus 313 -------------~~--------~~~--------~~~~i~~~d~~~a-----l~~~~ps~~~~ 341 (357)
T 3d8b_A 313 -------------TI--------TPD--------QVRPIAYIDFENA-----FRTVRPSVSPK 341 (357)
T ss_dssp -----------------------------------CCCBCHHHHHHH-----HHHHGGGCCCC
T ss_pred -------------cc--------ccc--------ccCCcCHHHHHHH-----HHhcCCCCCHH
Confidence 00 000 1267999999999 88899998854
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.2e-29 Score=268.42 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=174.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
++.+|++|+|.+++|+++.+.+. ++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67899999999999999997664 577888899999999999999999999999999999999999999999877643
Q ss_pred ----hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 263 ----DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 263 ----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
...++.+|..+ ..|+|+||||||.+...+.. ...+++++..|+|... ....+++++||+|+.
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~---~~~viviAatn~p~~ 181 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRPDI 181 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS---SCCCEEEECCSCGGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc---CccEEEEEecCChhh
Confidence 23466777665 36899999999998764432 2457889999998765 466788999999999
Q ss_pred CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 328 VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 328 LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
||++++||||||++|++++|+.++|.+|++.++......-..++..++..+.|++++||.++|..+
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988654444344578899999999999999999765
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=259.04 Aligned_cols=251 Identities=20% Similarity=0.246 Sum_probs=193.9
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...++.+|++|+|.+.+++.|.+.+..+...++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 44567899999999999999999999999999998888774 46799999999999999999999999999999999886
Q ss_pred CC------hHHHHHHHHh--hcCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCc
Q 011664 261 AD------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 261 ~~------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~ 326 (480)
.+ +..++.+|.. ...|+||||||||.++..+.. ...+.+|+..|++... .....++||+|||.++
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRPQ 263 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEEEEEecCCch
Confidence 54 2335666643 457899999999999765432 2345688999998765 2345678889999999
Q ss_pred cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHH
Q 011664 327 HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVI 405 (480)
Q Consensus 327 ~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i 405 (480)
.||++++| ||+.+|+++.|+.++|..|++.++...+..+.. .+..++..+.|+++++|..+|..+...+.+.+...
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~- 340 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE- 340 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh-
Confidence 99999999 999999999999999999999999877666554 56789999999999999999987766543321100
Q ss_pred HHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc
Q 011664 406 TALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF 471 (480)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~ 471 (480)
. .+.+ .. ...+.|+++||.++ ++..+|+++.
T Consensus 341 --~------------~~~~-----------~~-----~~~~~i~~~d~~~a-----l~~~~~s~~~ 371 (389)
T 3vfd_A 341 --Q------------VKNM-----------SA-----SEMRNIRLSDFTES-----LKKIKRSVSP 371 (389)
T ss_dssp -----------------CC-----------SS-----SCCCCCCHHHHHHH-----HHHCCCSSCH
T ss_pred --h------------hhcc-----------ch-----hhcCCcCHHHHHHH-----HHHcCCCCCH
Confidence 0 0000 00 01256899999999 7788888874
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=5.3e-30 Score=250.97 Aligned_cols=207 Identities=22% Similarity=0.319 Sum_probs=169.5
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC-
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD- 262 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~- 262 (480)
.++.+|++|+|.+++++.+.+.+. ++..++.|...|...++|+|||||||||||++|+++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 456789999999999999998665 578899999999999999999999999999999999999999999998876542
Q ss_pred -----hHHHHHHHHh--hcCCcEEEEecccccccCcc----------cccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 263 -----DADLKSLLLQ--TTSKSVILIEDLDRFLVEKP----------AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 263 -----~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~----------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
...++.+|.. ...|+||||||+|.+...+. ....+++|++.+++.... ...++||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~ttn~~ 161 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--NAPVIVLAATNRP 161 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--CSCCEEEECBSCC
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--CCCEEEEEecCCc
Confidence 2223444543 34789999999999976432 124578899999887541 3457889999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+.+|++++|+|||+..+++++|+.++|.++++.++.........+++.++..+.|++++||.++|..+
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a 229 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEA 229 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHH
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765443334567788888999999999998755
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.5e-32 Score=308.89 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=190.7
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD 262 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~ 262 (480)
..+..+|++++|.+++|+.+.+.+..++..+..|..++..+++++|||||||||||++|+++|++++.+++.++++.+.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34568999999999999999999998888999999999999999999999999999999999999999999999887642
Q ss_pred ------hHHHHHHHHh--hcCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 263 ------DADLKSLLLQ--TTSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 263 ------~~~l~~l~~~--~~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
+..++.+|.. ...||||||||||.++..+.. ...+++||+.||++.. ..+++||+|||+|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~---~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST---KKNVFIIGATNRP 626 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------CCBCCCCCBSC
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc---cCCeEEEEecCCc
Confidence 3557777754 457999999999999876532 2457899999999876 5678899999999
Q ss_pred ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHH
Q 011664 326 DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVI 405 (480)
Q Consensus 326 ~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i 405 (480)
+.||+|++|||||+.+|++++|+.++|..|++.++.........+++.++..+.|||++||.++|+.+...+. ++.+
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~---~~~~ 703 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI---RESI 703 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH---SCC-
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHH---HHHH
Confidence 9999999999999999999999999999999999976554444456778888999999999999987654433 2222
Q ss_pred HHHHhcCCCCcccccccccccCCCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCc-ccccccc
Q 011664 406 TALQTDGEGRGAANAGRRLDKSGSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSF-DLAAAEN 478 (480)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~-~~~~~~~ 478 (480)
+......... .. .+. ..+ .......++|+++||+++ ++..+||++. +...||+
T Consensus 704 ~~~~~~~~~~-------~~---~~~---~~~--~~~~~~~~~i~~~~f~~a-----~~~~~~svs~~~~~~ye~ 757 (806)
T 1ypw_A 704 ESEIRRERER-------QT---NPS---AME--VEEDDPVPEIRRDHFEEA-----MRFARRSVSDNDIRKYEM 757 (806)
T ss_dssp --------------------------------------CCTTTTTTSSCCC-----CCC---------------
T ss_pred HHHHhhhhhh-------cc---ccc---ccc--cccccccCccCHHHHHHH-----HHhCCCCCCHHHHHHHHH
Confidence 1100000000 00 000 000 001112367999999999 8889999984 4566654
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=3.3e-28 Score=236.75 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=169.5
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
++..++.+|++++|.++++.++.+.... +..+..+..++...++|++|+||||||||+|++++|+.++..++.++...+
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3445678999999999999999876654 567788899999999999999999999999999999999999999986543
Q ss_pred C----C--hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 A----D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~----~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
. + ...+..+|... ..|+++++||+|.+...+.. ...++++++.|+|... ....+++++||
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---~~~~i~~a~t~ 162 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATN 162 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---TCCEEEEEEES
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---CCCEEEEEccC
Confidence 2 2 23456667654 36899999999988754321 2346788889988765 45567788999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.|+.||++++|||||+..|+++.|+.++|.+|++.++......-..++..++..+.|++++||.++|..+
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654443344678899999999999999999755
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=6.1e-27 Score=231.28 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=169.3
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+...++.+|++++|.+++++++.+... .+..+..+..++...++|++|+||||||||+|++++|+.++..++.++...+
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 344477899999999999999987655 4567788889999999999999999999999999999999999999986543
Q ss_pred C----C--hHHHHHHHHhh--cCCcEEEEecccccccCccc---------ccchhhhhhhcccccccccCCceEEEEecC
Q 011664 261 A----D--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA---------AVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 261 ~----~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~---------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
. + ...+..+|... ..|+++++||+|.+...+.. ...+.++++.|+|... ....+++++||
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---~~~~i~~a~t~ 186 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATN 186 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT---TCCEEEEEEES
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC---CCCEEEEEecC
Confidence 2 1 23355666654 46899999999988654321 2346778888887654 44567788999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.|+.||++++|||||+..|++++|+.++|.+|++.++......-..++..++..+.|++++||..+|..+
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654433344678899999999999999998755
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=2.3e-26 Score=229.69 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=122.3
Q ss_pred hhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------hHHHHHHHHhh------cCCcEEEEeccc
Q 011664 218 RLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------DADLKSLLLQT------TSKSVILIEDLD 285 (480)
Q Consensus 218 ~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------~~~l~~l~~~~------~~~sII~IDEiD 285 (480)
..+.++|+|+|||||||||||++|+++|++++.+++.++++++.+ ...++.+|..+ ..|+||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346778899999999999999999999999999999999876542 23466677544 379999999999
Q ss_pred ccccCcccc--------cchhhhhhhccccc--------ccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCH
Q 011664 286 RFLVEKPAA--------VSLSGVLNFMDGVL--------NSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 286 ~l~~~~~~~--------~~ls~lL~~ldg~~--------~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
.+++...+. ...+.|++.||+.. ......+++||+|||+++.||++++|||||+..|++ |+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 998744321 23477888888553 111245688999999999999999999999998984 699
Q ss_pred HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHH
Q 011664 350 SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 350 ~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ 388 (480)
++|.+|++.++...+. +.+.++..+.+|++++|..
T Consensus 188 ~~r~~Il~~~~~~~~~----~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 188 EDRIGVCTGIFRTDNV----PAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHGGGCC----CHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHhccCCCC----CHHHHHHHhCCCCcccHHH
Confidence 9999999998865433 3556666677899998864
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=8.5e-26 Score=254.11 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=178.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC--
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD-- 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~-- 262 (480)
++++|++|+|.+++++.|.+.+..++.+++.|..++..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999765432
Q ss_pred ----hHHHHHHHHhh--cCCcEEEEecccccccCccc------ccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 263 ----DADLKSLLLQT--TSKSVILIEDLDRFLVEKPA------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 263 ----~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
...++.+|... ..|+++||||+|.++..+.. ......|+..+++... ...+++|+|||+++.+|+
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~---~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT---TSCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc---cccEEEecccCCchhcCH
Confidence 23466677543 57899999999999875432 2346778999998876 467888999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
++.|+|||+..+.++.|+.++|.++++.++.........++..++..+.|++++|+..++..+.
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999987655544456788999999999999999987554
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=5.4e-24 Score=225.03 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=125.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC--CcEEEEeCCCcCC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS--YDVYDVDLSRVAD 262 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~--~~~~~i~~s~~~~ 262 (480)
+...|++++|.+++++.+.+.+..+ ..|..+++++|||||||||||++|+++|++++ .+|+.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4557899999999999988766433 23556778999999999999999999999999 8999999876643
Q ss_pred ----h-HHHHHHHHhh-----cCCcEEEEecccccccCccccc----------ch---------------hhhhhhcccc
Q 011664 263 ----D-ADLKSLLLQT-----TSKSVILIEDLDRFLVEKPAAV----------SL---------------SGVLNFMDGV 307 (480)
Q Consensus 263 ----~-~~l~~l~~~~-----~~~sII~IDEiD~l~~~~~~~~----------~l---------------s~lL~~ldg~ 307 (480)
+ ..++..|..+ ..|+||||||+|.+++.+.... .+ ++++..++..
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 2 2377778665 5799999999999997654321 11 1244444321
Q ss_pred cccccCCceEEEEecCCCccCcccccCCCceeE--EEEcCCCC--HHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCH
Q 011664 308 LNSCCFEERVMVFTMNSKDHVDQALLRPGRIDV--HIHFPLCD--FSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSP 383 (480)
Q Consensus 308 ~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~--~I~~~~p~--~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~ 383 (480)
.. ..++.++|++|||+++.+|++++||||||. .+.+|.|+ .++|++|++.+. ..+++.++..+.| +
T Consensus 184 ~~-~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 184 RV-EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARPQG--G 253 (456)
T ss_dssp TC-CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC--------
T ss_pred cC-CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhCCC--h
Confidence 11 113334445699999999999999999998 66777775 466777665443 1367888888888 9
Q ss_pred HHHHHHHHH
Q 011664 384 AEIGELMIA 392 (480)
Q Consensus 384 adI~~ll~~ 392 (480)
+|+.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999853
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.84 E-value=7.6e-20 Score=184.61 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=150.9
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|. ....|.+|++++|.+.+++.+...+...... .....++||+||||||||++|+++|+.++.+++.++
T Consensus 18 ~~~--~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 18 TYE--TSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhh--hccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 454 2346779999999999999998877655321 124568999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccc-------------ccCCceEEEEecC
Q 011664 257 LSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS-------------CCFEERVMVFTMN 323 (480)
Q Consensus 257 ~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~-------------~~~~~~ivI~tTN 323 (480)
++.+.....+...+.....+++|||||||.+.. .....|+..|+...-. ......++|++||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLSP-----AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred chhccchhHHHHHHHhccCCCEEEEechhhcCH-----HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 988887778888888888899999999998842 2345566655432100 0011368899999
Q ss_pred CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~a 393 (480)
....++++|++ ||+.++++++|+.+++..+++.++...+..+.++. +.++... +-.+.++.+++..+
T Consensus 163 ~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 163 RAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRV 230 (338)
T ss_dssp CGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHHH
T ss_pred CccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999876665555544 4565543 55667777766553
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=4.4e-20 Score=183.68 Aligned_cols=172 Identities=17% Similarity=0.266 Sum_probs=132.4
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCC---CceEEEEccCCCcHHHHHHHHHHcC-------CCcEEEEeCCCc
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVW---KRSYLLYGPSGTGKSSFAAAMASFM-------SYDVYDVDLSRV 260 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~---~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~~i~~s~~ 260 (480)
+|+|++++|+.|.+.+..+.. +..+...|... ..++||+||||||||++|+++|+.+ ..+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999988887653 56666666543 3469999999999999999999987 338999988766
Q ss_pred CC------hHHHHHHHHhhcCCcEEEEecccccccCcc----cccchhhhhhhcccccccccCCceEEEEecCCCc----
Q 011664 261 AD------DADLKSLLLQTTSKSVILIEDLDRFLVEKP----AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD---- 326 (480)
Q Consensus 261 ~~------~~~l~~l~~~~~~~sII~IDEiD~l~~~~~----~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~---- 326 (480)
.+ ...+..+|... .++||||||+|.++..+. ....+..|++.|+.. ....++|+|||.++
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-----RDDLVVILAGYADRMENF 184 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-----CCCEEEEEeCChHHHHHH
Confidence 43 23355566554 678999999999975443 334567788887643 34567888887653
Q ss_pred -cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH
Q 011664 327 -HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV 371 (480)
Q Consensus 327 -~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i 371 (480)
.++|+|++ ||+.+|+|++|+.+++..|++.++...+..+.++.
T Consensus 185 ~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 185 FQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp HHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred HhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 35899999 99999999999999999999999987666655544
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=5.4e-19 Score=176.80 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=148.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDA 264 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~ 264 (480)
.|.+|++++|.+..++.+.+.+...... + ..+.++||+||||||||++|+++|+.++.+++.++++.+....
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChH
Confidence 5678999999999999988877654321 1 2346899999999999999999999999999999999888777
Q ss_pred HHHHHHHh-hcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc--------ccCCceEEEEecCCCccCcc
Q 011664 265 DLKSLLLQ-TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS--------CCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 265 ~l~~l~~~-~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~--------~~~~~~ivI~tTN~~~~LD~ 330 (480)
++...+.. ...+++|||||+|.+.. .....|+..++... .. ......++|++||.+..+++
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~-----~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~ 153 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSR-----QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCH-----HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSC
T ss_pred HHHHHHHHhccCCCEEEEECCccccc-----chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCH
Confidence 77777766 56789999999998742 22344555554321 00 00124678899999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHHHHh
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+|++ ||+.++.+++|+.+++..++..++...+..+.++ ++.++..+ +-.+.++.+++..+
T Consensus 154 ~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 154 PLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRV 214 (324)
T ss_dssp STTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHH
T ss_pred HHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 9999 9988999999999999999999987666666554 35666665 44677777777654
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2.3e-20 Score=195.63 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=76.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCC-CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGR-VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------ 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~-~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------ 262 (480)
++|+|++++|+.+...+..+.+++..+..++. .+++++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999999999888777776665543 36789999999999999999999999999999999865432
Q ss_pred --hHHHHHHHHhhcCCcEEEEecccccccCc---ccccchhhhhhhcccccccccCCceEEEEe-cCCCccCcccccCCC
Q 011664 263 --DADLKSLLLQTTSKSVILIEDLDRFLVEK---PAAVSLSGVLNFMDGVLNSCCFEERVMVFT-MNSKDHVDQALLRPG 336 (480)
Q Consensus 263 --~~~l~~l~~~~~~~sII~IDEiD~l~~~~---~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t-TN~~~~LD~aLlrpG 336 (480)
+..++.+|..+. .++++||+|.+.... .....+++||+.|||+.+ .. .+ +++ ||+|+.||+||+|||
T Consensus 95 d~e~~lr~lf~~a~--~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~---~~-~v-~a~~TN~~~~ld~aL~rgg 167 (444)
T 1g41_A 95 EVDSIIRDLTDSAM--KLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG---EV-EN-HDSHSSTRQAFRKKLREGQ 167 (444)
T ss_dssp CTHHHHHHHHHHHH--HHHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHH--hcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc---cc-cc-ccccccCHHHHHHHHHcCC
Confidence 344666665432 234589988775432 234668999999999976 22 23 444 999999999999999
Q ss_pred ceeEEEEcCCCCHH-HHHHHH
Q 011664 337 RIDVHIHFPLCDFS-SFKTLA 356 (480)
Q Consensus 337 Rfd~~I~~~~p~~~-~r~~il 356 (480)
|||++|++++|+.. .+.+|+
T Consensus 168 r~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 168 LDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------
T ss_pred CcceEEEEcCCCCccchhhhh
Confidence 99999999999987 566654
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=6.3e-19 Score=174.62 Aligned_cols=213 Identities=15% Similarity=0.268 Sum_probs=143.9
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhh-CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRL-GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------ 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~-g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------ 262 (480)
++++|++++++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999998887654433222111 1124568999999999999999999999999999999876643
Q ss_pred --hHHHHHHHHhh-------cCCcEEEEecccccccCcccc-------cchhhhhhhccccccc-----ccCCceEEEEe
Q 011664 263 --DADLKSLLLQT-------TSKSVILIEDLDRFLVEKPAA-------VSLSGVLNFMDGVLNS-----CCFEERVMVFT 321 (480)
Q Consensus 263 --~~~l~~l~~~~-------~~~sII~IDEiD~l~~~~~~~-------~~ls~lL~~ldg~~~~-----~~~~~~ivI~t 321 (480)
...++.++... ..++||||||+|.+....... ...+.|+..|++..-. ......++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 23355555432 357999999999987644211 1145677777753210 01245677777
Q ss_pred ----cCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCC---CCCHHHHHHHHHHhh
Q 011664 322 ----MNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGS---SLSPAEIGELMIANR 394 (480)
Q Consensus 322 ----TN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~---g~s~adI~~ll~~a~ 394 (480)
++.+..++++|++ ||+.+|+|++|+.+++..|++..+. .+...+........ .+++..+..+...++
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHA----SLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHH----HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 5688899999999 9999999999999999999985321 11122222222221 478888877776653
Q ss_pred h-------cHHHHHHHHHHHH
Q 011664 395 N-------SPSRALKSVITAL 408 (480)
Q Consensus 395 ~-------~~~~al~~~i~~~ 408 (480)
. ...+.+..+++.+
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHH
T ss_pred hhcccccccCcHHHHHHHHHH
Confidence 2 4455555555543
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=2.8e-17 Score=153.17 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=117.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLS 258 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s 258 (480)
..|.+|++++|.++.++.+.+.+.. + ...+++|+||||||||++++++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 3678899999999988888765532 1 12359999999999999999999875 4568888887
Q ss_pred CcCChHHHHHHHHh--------hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 259 RVADDADLKSLLLQ--------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 259 ~~~~~~~l~~l~~~--------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
...+...+...+.. ...+.+|+|||+|.+.. .....|+..++.. ..+..+|++||.++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~~~l~~~l~~~-----~~~~~~i~~~~~~~~~~~ 147 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----DAQAALRRTMEMY-----SKSCRFILSCNYVSRIIE 147 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----HHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCH
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----HHHHHHHHHHHhc-----CCCCeEEEEeCChhhcCH
Confidence 76665554443322 14678999999998743 2234556665542 345678889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCC
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKD 364 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~ 364 (480)
++.+ |+. .+++++|+.++...++..++...+
T Consensus 148 ~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~ 178 (226)
T 2chg_A 148 PIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG 178 (226)
T ss_dssp HHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcC
Confidence 9999 997 999999999999999988775433
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.76 E-value=7.2e-18 Score=165.38 Aligned_cols=211 Identities=18% Similarity=0.193 Sum_probs=135.3
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC-cCC------
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR-VAD------ 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~-~~~------ 262 (480)
+.++|.+...+.+.+...... ......+...++++||+||||||||++|+++|+.++.+++.+++++ +.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 456777766666665422221 1222334566789999999999999999999999999999998764 222
Q ss_pred hHHHHHHHHhh--cCCcEEEEecccccccCcc-----cccchhhhhhhcccccccccCCceEEEEecCCCccCcc-cccC
Q 011664 263 DADLKSLLLQT--TSKSVILIEDLDRFLVEKP-----AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ-ALLR 334 (480)
Q Consensus 263 ~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~-----~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~-aLlr 334 (480)
...++.+|... ..+++|||||||.+++.+. ....+..|+..+++... .....+||+|||.++.+++ ++++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~--~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--QGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS--TTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC--CCCCEEEEEecCChhhcchhhhhc
Confidence 13355666543 4689999999999865432 11223444455554432 1345678889999999998 5666
Q ss_pred CCceeEEEEcCCCCH-HHHHHHHHHHhccCCCCCchhHHHHHHhCCCC----CHHHHHHHHHHhhh-cHHHHHHHHHHHH
Q 011664 335 PGRIDVHIHFPLCDF-SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSL----SPAEIGELMIANRN-SPSRALKSVITAL 408 (480)
Q Consensus 335 pGRfd~~I~~~~p~~-~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~----s~adI~~ll~~a~~-~~~~al~~~i~~~ 408 (480)
||+..|++|.++. ++...++.... .--...+..++..+.|+ ...++.+++..+.. .....++.++..+
T Consensus 188 --rf~~~i~~p~l~~r~~i~~i~~~~~----~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l 261 (272)
T 1d2n_A 188 --AFSTTIHVPNIATGEQLLEALELLG----NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALL 261 (272)
T ss_dssp --TSSEEEECCCEEEHHHHHHHHHHHT----CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred --ccceEEcCCCccHHHHHHHHHHhcC----CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 9999999988776 55555554421 11233556777776676 55666666655442 2334455555555
Q ss_pred Hhc
Q 011664 409 QTD 411 (480)
Q Consensus 409 ~~~ 411 (480)
+..
T Consensus 262 ~~~ 264 (272)
T 1d2n_A 262 REE 264 (272)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=7.2e-18 Score=181.93 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=131.8
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHH---
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDAD--- 265 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~--- 265 (480)
.++++|.+++++.+.+.+........ . ....+||+||||||||++|+++|+.++.++..++++.+.....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 46699999999998765543322111 1 3457999999999999999999999999999999876543221
Q ss_pred ------------HHHHHHhhc-CCcEEEEecccccccCcccccchhhhhhhccccccc----------ccCCceEEEEec
Q 011664 266 ------------LKSLLLQTT-SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS----------CCFEERVMVFTM 322 (480)
Q Consensus 266 ------------l~~l~~~~~-~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~----------~~~~~~ivI~tT 322 (480)
+...|..+. ...|+||||||.+..... ....+.|+..||..... .....++||+||
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~-~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR-GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc-cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 233444432 345999999999976432 22457788888754321 011467899999
Q ss_pred CCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHH--HHhCCCCCHHHHHHHHHH-hhhcHHH
Q 011664 323 NSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEI--FQNGSSLSPAEIGELMIA-NRNSPSR 399 (480)
Q Consensus 323 N~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l--~~~~~g~s~adI~~ll~~-a~~~~~~ 399 (480)
|.++.++|+|++ ||+ .|+|+.|+.+++..|++.++-.. ..... ....-.+++..+..++.. .+....+
T Consensus 232 N~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~------~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 232 NNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPK------QIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHH------HHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred CccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHH------HHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 999999999999 996 79999999999999999887210 00000 001123456666665543 3344556
Q ss_pred HHHHHHHHHHh
Q 011664 400 ALKSVITALQT 410 (480)
Q Consensus 400 al~~~i~~~~~ 410 (480)
.+++.++.+..
T Consensus 303 ~L~~~i~~~~~ 313 (543)
T 3m6a_A 303 SLERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.75 E-value=1.1e-17 Score=170.28 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=124.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCCCcC-
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLSRVA- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s~~~- 261 (480)
+..+|++++|.+.+++.+........ .|..+++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 33459999999999988765443321 24445679999999999999999999999875 67777654311
Q ss_pred -------------------------------------------------C-----hHHHHHHHHhh-------c----CC
Q 011664 262 -------------------------------------------------D-----DADLKSLLLQT-------T----SK 276 (480)
Q Consensus 262 -------------------------------------------------~-----~~~l~~l~~~~-------~----~~ 276 (480)
+ ...++..+... . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 1 12233333221 1 26
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec------------CCCccCcccccCCCceeEEEEc
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM------------NSKDHVDQALLRPGRIDVHIHF 344 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT------------N~~~~LD~aLlrpGRfd~~I~~ 344 (480)
+||||||+|.+. ....+.|+..++... .. +++++| |.+..++++|++ ||.. ++|
T Consensus 191 ~vl~IDEi~~l~-----~~~~~~L~~~le~~~-----~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~ 256 (368)
T 3uk6_A 191 GVLFIDEVHMLD-----IESFSFLNRALESDM-----AP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST 256 (368)
T ss_dssp CEEEEESGGGSB-----HHHHHHHHHHTTCTT-----CC-EEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred ceEEEhhccccC-----hHHHHHHHHHhhCcC-----CC-eeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence 899999999884 233455666554322 12 334333 357889999999 9976 899
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHH
Q 011664 345 PLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 345 ~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~ 392 (480)
++|+.+++..+++.++...+..+.++. +.++..+.+.++.++.++|..
T Consensus 257 ~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999998876555555443 445444433566666666544
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=2.1e-17 Score=165.80 Aligned_cols=152 Identities=22% Similarity=0.187 Sum_probs=118.6
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD 263 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~ 263 (480)
-.|.+|++++|.+++++.+.+.+. ....+..+|++||||||||++++++|++++.+++.++++... .
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~ 86 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-I 86 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-H
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-H
Confidence 467899999999999888876654 123456789999999999999999999999999999987754 4
Q ss_pred HHHHHHHHh---h----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCC
Q 011664 264 ADLKSLLLQ---T----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPG 336 (480)
Q Consensus 264 ~~l~~l~~~---~----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpG 336 (480)
..++..+.. . ..+.||||||+|.+.+ ......|+..++... ....+|+|||.+..++++|++
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~~~L~~~le~~~-----~~~~iI~~~n~~~~l~~~l~s-- 155 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQRHLRSFMEAYS-----SNCSIIITANNIDGIIKPLQS-- 155 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHHHHHHHHHHHHG-----GGCEEEEEESSGGGSCTTHHH--
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHHHHHHHHHHhCC-----CCcEEEEEeCCccccCHHHHh--
Confidence 455554432 1 1578999999998841 223456666665432 356788899999999999999
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 337 RIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 337 Rfd~~I~~~~p~~~~r~~il~~~l 360 (480)
||. .++|+.|+.+++..++..++
T Consensus 156 R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 156 RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 995 79999999999888777664
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=1.3e-17 Score=170.57 Aligned_cols=214 Identities=14% Similarity=0.228 Sum_probs=140.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhh-hC-CCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC------
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHR-LG-RVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD------ 262 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~-~g-~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~------ 262 (480)
.|+|++.+++.+...+............ .+ ...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3699999999999888755543321110 11 124678999999999999999999999999999999876553
Q ss_pred --hHHHHHHHHhh------cCCcEEEEecccccccCcccc---------cchhhhhhhccccccc---------------
Q 011664 263 --DADLKSLLLQT------TSKSVILIEDLDRFLVEKPAA---------VSLSGVLNFMDGVLNS--------------- 310 (480)
Q Consensus 263 --~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~---------~~ls~lL~~ldg~~~~--------------- 310 (480)
...+..++... ..++||||||||.+...+.+. ...+.||..|+|....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 12244555433 467899999999987654332 1578899999854210
Q ss_pred -ccCCceEEEEecCCC----------c------------------------------c-----CcccccCCCceeEEEEc
Q 011664 311 -CCFEERVMVFTMNSK----------D------------------------------H-----VDQALLRPGRIDVHIHF 344 (480)
Q Consensus 311 -~~~~~~ivI~tTN~~----------~------------------------------~-----LD~aLlrpGRfd~~I~~ 344 (480)
....++++|+|+|.. . . +.|+|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 012334455554431 1 1 6788887 99999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCchhHHHHHHh---CCCCCHHHHHHHHHHh--hhcHHHHHHHHHHHHHh
Q 011664 345 PLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQN---GSSLSPAEIGELMIAN--RNSPSRALKSVITALQT 410 (480)
Q Consensus 345 ~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~---~~g~s~adI~~ll~~a--~~~~~~al~~~i~~~~~ 410 (480)
++|+.+.+..|+...+. .+...+...... ...+++..+..++..+ +....|.|+++++..-.
T Consensus 254 ~pl~~~~~~~I~~~~~~----~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 254 NELSEEALIQILKEPKN----ALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp CCCCHHHHHHHHHSSTT----CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----HHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 99999999999876331 111222222221 1246777777777543 23334667776665543
No 42
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=1.2e-16 Score=150.55 Aligned_cols=181 Identities=18% Similarity=0.276 Sum_probs=127.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------- 250 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------- 250 (480)
..|.+|++++|.++.++.+.+.+.. + ..++.++|+||||||||++++++++.++.
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3577899999999999888766542 1 12457999999999999999999987643
Q ss_pred -----------cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccC
Q 011664 251 -----------DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCF 313 (480)
Q Consensus 251 -----------~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~ 313 (480)
+++.++.........++.++... ..+.+|+|||+|.+. ......|+..++.. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----~~~~~~l~~~l~~~-----~ 154 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----RHSFNALLKTLEEP-----P 154 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----HHHHHHHHHHHHSC-----C
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----HHHHHHHHHHHhcC-----C
Confidence 34555544333344466666543 257899999999873 23445666666532 3
Q ss_pred CceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHH
Q 011664 314 EERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 314 ~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll 390 (480)
...++|++||.+..+++++++ |+ ..+++++++.++..+++..++...+..+.++ ++.++..+.| .|.++.+++
T Consensus 155 ~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~ 228 (250)
T 1njg_A 155 EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLT 228 (250)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 467888899999999999998 86 6899999999999999998886544444332 3445555433 555555544
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=3.3e-16 Score=165.03 Aligned_cols=187 Identities=14% Similarity=0.247 Sum_probs=126.4
Q ss_pred CCCCccccccChHHH---HHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC
Q 011664 185 HPSTFDTISMETDLK---NRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k---~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~ 261 (480)
.|.+|++++|++.++ +.+...+.. |. ..++|||||||||||++|+++|+.++.+++.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 578999999999888 555544431 21 2589999999999999999999999999999997653
Q ss_pred ChHHHHHHHHhh------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEec--CCCccCccccc
Q 011664 262 DDADLKSLLLQT------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM--NSKDHVDQALL 333 (480)
Q Consensus 262 ~~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT--N~~~~LD~aLl 333 (480)
+...++.++..+ ..+.||||||||.+... ....|+..++. ..+++|++| |....++++|+
T Consensus 87 ~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----~q~~LL~~le~-------~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 87 GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----QQDAFLPHIED-------GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------CCHHHHHT-------TSCEEEEEESSCGGGSSCHHHH
T ss_pred CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----HHHHHHHHHhc-------CceEEEecCCCCcccccCHHHh
Confidence 345566665432 36899999999988432 33557777653 235566654 45568999999
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 011664 334 RPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITAL 408 (480)
Q Consensus 334 rpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~ 408 (480)
+ |+. ++.++.|+.++...++..++......+. .....+++..+..++..+.. ..+.+..+++.+
T Consensus 155 s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~-------~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 155 S--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG-------GQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp T--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSST-------TSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred C--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc-------cccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 9 986 7889999999999999999865322211 01123566656555554333 333334444433
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.7e-16 Score=168.55 Aligned_cols=187 Identities=19% Similarity=0.298 Sum_probs=129.0
Q ss_pred cceeCCCCCCCCccccccChHHHHHHHHHHHHHHhh-hhHHhhhCC---CCCceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 177 RWRSVPFTHPSTFDTISMETDLKNRVKSDLESFLKA-KHYYHRLGR---VWKRSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 177 ~w~~v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~-~~~~~~~g~---~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
.|.. .-.|.+|++++|.+++++.+.+.+..+... +..|...|. +.++++||+||||||||++|+++|++++.++
T Consensus 28 lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 28 LWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred Cccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 5643 346789999999999999999888765433 233444443 2567999999999999999999999999999
Q ss_pred EEEeCCCcCChHHHHHHHH-------------h-------hcCCcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 253 YDVDLSRVADDADLKSLLL-------------Q-------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 253 ~~i~~s~~~~~~~l~~l~~-------------~-------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
+.++++.......+...+. . ...++||||||+|.+.... ...+..|++.++..
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--~~~l~~L~~~l~~~----- 178 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--RGGVGQLAQFCRKT----- 178 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--TTHHHHHHHHHHHC-----
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--HHHHHHHHHHHHhc-----
Confidence 9999988776543333221 1 1467899999999986532 22345555555431
Q ss_pred CCceEEEEecC--CCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhC
Q 011664 313 FEERVMVFTMN--SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNG 378 (480)
Q Consensus 313 ~~~~ivI~tTN--~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~ 378 (480)
... +|+++| ....+. .+.| | ...+.|+.|+.+++.+++...+...+..+.++ ++.+++.+
T Consensus 179 -~~~-iIli~~~~~~~~l~-~l~~--r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 179 -STP-LILICNERNLPKMR-PFDR--V-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 (516)
T ss_dssp -SSC-EEEEESCTTSSTTG-GGTT--T-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred -CCC-EEEEEcCCCCccch-hhHh--c-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 222 333333 333444 3544 4 46999999999999999988876655555554 45666655
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=1.2e-17 Score=152.23 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=105.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|.+|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 356789999999888877764421 235689999999999999999999986 788888
Q ss_pred EeCCCcCC--------hHHHHHHHH---hhcCCcEEEEecccccccCccc--ccchhhhhhhcccccccccCCceEEEEe
Q 011664 255 VDLSRVAD--------DADLKSLLL---QTTSKSVILIEDLDRFLVEKPA--AVSLSGVLNFMDGVLNSCCFEERVMVFT 321 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~---~~~~~sII~IDEiD~l~~~~~~--~~~ls~lL~~ldg~~~~~~~~~~ivI~t 321 (480)
++++.+.. ...+..++. +...++||+|||+|.+...... ...+..++..+ .. ..+..+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~---~~~~~~i~~ 157 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LA---RGELHCVGA 157 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HH---TTSCCEEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hc---cCCeEEEEe
Confidence 88765431 122444443 3456889999999998654321 12222333222 12 245667888
Q ss_pred cCCCc-----cCcccccCCCceeEEEEcCCCCHHHHHHHH
Q 011664 322 MNSKD-----HVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356 (480)
Q Consensus 322 TN~~~-----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il 356 (480)
||.++ .+++++++ ||+ .|++++|+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88776 78999999 998 7999999999988764
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=2e-16 Score=157.01 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=123.7
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEe
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVD 256 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~ 256 (480)
....|.+|++++|.+++++.+...+.. +. .+ ++|||||||||||++|+++|+.+ +.+++.++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TC-CC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CC-CC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 345778999999999998887754421 21 22 49999999999999999999986 34688888
Q ss_pred CCCcCChHHHHHHH---Hhh-----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccC
Q 011664 257 LSRVADDADLKSLL---LQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV 328 (480)
Q Consensus 257 ~s~~~~~~~l~~l~---~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L 328 (480)
++...+...++..+ ... ..+.||+|||+|.+.. .....|+..++.. ....++|++||.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~~~L~~~le~~-----~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----DAQAALRRTMEMY-----SKSCRFILSCNYVSRI 145 (319)
T ss_dssp TTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----HHHHTTGGGTSSS-----SSSEEEEEEESCGGGS
T ss_pred CccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----HHHHHHHHHHHhc-----CCCCeEEEEeCChhhc
Confidence 87654433333222 211 3478999999998742 2345566666542 3467788899999999
Q ss_pred cccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHh
Q 011664 329 DQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQN 377 (480)
Q Consensus 329 D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~ 377 (480)
++++.+ |+. .+.+++|+.++...++..++...+..+.++. +.++..
T Consensus 146 ~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~ 192 (319)
T 2chq_A 146 IEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI 192 (319)
T ss_dssp CHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT
T ss_pred chHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999 886 8999999999999999988876665555433 444443
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=2e-16 Score=157.19 Aligned_cols=160 Identities=17% Similarity=0.291 Sum_probs=115.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLK 267 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~ 267 (480)
+++|.+.+++.+...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++++.+.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 577899999998887765432110 0 11133479999999999999999999987 5569999988765543322
Q ss_pred HHH------------------HhhcCCcEEEEecccccccCcccccchhhhhhhccccccc------ccCCceEEEEecC
Q 011664 268 SLL------------------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNS------CCFEERVMVFTMN 323 (480)
Q Consensus 268 ~l~------------------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~------~~~~~~ivI~tTN 323 (480)
.++ ......+||||||+|.+. ....+.|+..|+.-.-. ....+.++|+|||
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 222 112345899999999873 23456677776532210 1123677899999
Q ss_pred C--------------------------CccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 324 S--------------------------KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 324 ~--------------------------~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
. ...++|+|++ ||+..+.+++|+.+++..|++.++.
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 8 5578899998 9999999999999999999998875
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.68 E-value=1.8e-16 Score=159.32 Aligned_cols=191 Identities=15% Similarity=0.200 Sum_probs=128.7
Q ss_pred CCCCCCCccccc-cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 182 PFTHPSTFDTIS-METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 182 ~~~~~~~~~~i~-g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
++.+..+|++++ |..... .. ..+......+ + ....+++||||||||||++++++++++ +.+++++++
T Consensus 3 ~l~~~~~f~~fv~g~~~~~-a~-~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 3 FLNPKYTLENFIVGEGNRL-AY-EVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CCCTTCCSSSCCCCTTTHH-HH-HHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCCCcccCCCCCcHHH-HH-HHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 355677899997 543322 11 2233333332 1 134689999999999999999999988 899999998
Q ss_pred CCcCChH-------HHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc---c
Q 011664 258 SRVADDA-------DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD---H 327 (480)
Q Consensus 258 s~~~~~~-------~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~---~ 327 (480)
..+..+- ...........+++|||||+|.+...+. ....++..++.... .+.++|+.+++.+. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~---~~~~l~~~l~~~~~---~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKER---TQIEFFHIFNTLYL---LEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHH---HHHHHHHHHHHHHH---TTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChH---HHHHHHHHHHHHHH---CCCeEEEEecCChHHHHH
Confidence 6653210 0111122234689999999999864322 23445555554433 34456666777776 6
Q ss_pred CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHH
Q 011664 328 VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 328 LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~ 392 (480)
++++|++ ||+ ..+++++ +.+++..+++.++...+..+.+++ +.++... -...++..++..
T Consensus 148 l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~ 210 (324)
T 1l8q_A 148 VSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKL 210 (324)
T ss_dssp SCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHH
T ss_pred hhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 8999999 996 7899999 999999999999877676676654 5666665 556666666554
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=1.5e-15 Score=155.93 Aligned_cols=213 Identities=15% Similarity=0.234 Sum_probs=133.8
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhH------------------HhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHY------------------YHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~------------------~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
.|+|++++|+.|...+......... +.. ....+.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4799999999999888654443321 111 123456899999999999999999999999999
Q ss_pred EEEeCCCcCC--------hHHHHHHHHhh------cCCcEEEEecccccccCcccc---------cchhhhhhhcccccc
Q 011664 253 YDVDLSRVAD--------DADLKSLLLQT------TSKSVILIEDLDRFLVEKPAA---------VSLSGVLNFMDGVLN 309 (480)
Q Consensus 253 ~~i~~s~~~~--------~~~l~~l~~~~------~~~sII~IDEiD~l~~~~~~~---------~~ls~lL~~ldg~~~ 309 (480)
+.++++.+.. ...+..++... ..++||||||+|.+...+... ...+.|+..|++..-
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999876542 12244444322 368999999999987653211 156778888875310
Q ss_pred c----------------ccCCceEEEEecCC-----------------------------------------CccCcccc
Q 011664 310 S----------------CCFEERVMVFTMNS-----------------------------------------KDHVDQAL 332 (480)
Q Consensus 310 ~----------------~~~~~~ivI~tTN~-----------------------------------------~~~LD~aL 332 (480)
. ....+.++|+|||. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 00134567777762 11245667
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHh---CCCCCHHHHHHHHHHhhh--cHHHHHHHHHHH
Q 011664 333 LRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQN---GSSLSPAEIGELMIANRN--SPSRALKSVITA 407 (480)
Q Consensus 333 lrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~---~~g~s~adI~~ll~~a~~--~~~~al~~~i~~ 407 (480)
++ |++..+.|++++.++...|+...+. .+..++...... ...+++..+..++..+.. ...|.++.+++.
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKN----ALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHH----HHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 77 9988999999999998888864321 111122211111 124777777777766542 445666666655
Q ss_pred HHh
Q 011664 408 LQT 410 (480)
Q Consensus 408 ~~~ 410 (480)
+-.
T Consensus 335 ~~~ 337 (376)
T 1um8_A 335 FCL 337 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=2.4e-16 Score=149.63 Aligned_cols=189 Identities=13% Similarity=0.136 Sum_probs=119.7
Q ss_pred CCCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 181 VPFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 181 v~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
.++.++.+|+++++.+. .+.+.+.+..+... +..++++|+||||||||++++++|+++ +.+++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 19 VHLPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CCCCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34455679999988321 12233333333322 135689999999999999999999876 478888888
Q ss_pred CCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC-CCc---cCccccc
Q 011664 258 SRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN-SKD---HVDQALL 333 (480)
Q Consensus 258 s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN-~~~---~LD~aLl 333 (480)
+.+... +...+.....+.+|+|||+|.+..... ....++..++.... .....+|+||| .+. .+++++.
T Consensus 89 ~~~~~~--~~~~~~~~~~~~vliiDe~~~~~~~~~---~~~~l~~~l~~~~~---~~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 89 GIHASI--STALLEGLEQFDLICIDDVDAVAGHPL---WEEAIFDLYNRVAE---QKRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp GGGGGS--CGGGGTTGGGSSEEEEETGGGGTTCHH---HHHHHHHHHHHHHH---HCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred HHHHHH--HHHHHHhccCCCEEEEeccccccCCHH---HHHHHHHHHHHHHH---cCCCeEEEEcCCCHHHHHHhhhhhh
Confidence 765432 112233345789999999998854321 13445555554433 12232455444 443 4568888
Q ss_pred CCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 334 RPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 334 rpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
+ ||. ..+++++|+.+++.+++..++...+..+.++. +.++..+ +-+..++.+++
T Consensus 161 ~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l 217 (242)
T 3bos_A 161 S--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVL 217 (242)
T ss_dssp H--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred h--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHH
Confidence 8 886 89999999999999999998875555555443 4455444 33445544444
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=3.3e-16 Score=157.99 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=128.0
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC------CcEEEEeC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS------YDVYDVDL 257 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~------~~~~~i~~ 257 (480)
..|.+|++++|.+++++.+...+. . | ...++||+||||||||++++++|+.++ ..+..+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLK----S-------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTT----C-------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHh----c-------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 367899999999999988775442 1 1 112499999999999999999999864 46888888
Q ss_pred CCcCChHHHHHHH---Hhh---------------cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEE
Q 011664 258 SRVADDADLKSLL---LQT---------------TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMV 319 (480)
Q Consensus 258 s~~~~~~~l~~l~---~~~---------------~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI 319 (480)
++..+...++..+ ... ..+.||+|||+|.+.. ...+.|+..|+... ....+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----~~~~~Ll~~le~~~-----~~~~~i 167 (353)
T 1sxj_D 98 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----DAQSALRRTMETYS-----GVTRFC 167 (353)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----HHHHHHHHHHHHTT-----TTEEEE
T ss_pred ccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----HHHHHHHHHHHhcC-----CCceEE
Confidence 7765544443322 211 2456999999998843 23456777765432 345677
Q ss_pred EecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 320 FTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 320 ~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
++||.+..+++++++ |+. .+.+++|+.++...++...+...+..+.++. +.++..+.| .+..+.+++
T Consensus 168 l~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l 235 (353)
T 1sxj_D 168 LICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLL 235 (353)
T ss_dssp EEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHH
T ss_pred EEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 788999999999999 996 8999999999999999988876665555543 455555433 344444443
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=6.8e-16 Score=153.68 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=126.3
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEeCC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVDLS 258 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~~s 258 (480)
..|.+|++++|.+++++.+...+.. | ...++||+||||||||++|+++|+.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 4678899999999999888765542 2 122599999999999999999999863 347888877
Q ss_pred CcCChHHHHHHHH---hh-----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 259 RVADDADLKSLLL---QT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 259 ~~~~~~~l~~l~~---~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+..+...++..+. .. ..+.||+|||+|.+.. ...+.|+..++.. .....+|++||.+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~~~L~~~le~~-----~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 86 DERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----DAQQALRRTMEMF-----SSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp CHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----HHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCH
T ss_pred ccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----HHHHHHHHHHHhc-----CCCCeEEEEeCCccccCH
Confidence 6443333333221 11 3578999999998742 2345566666542 345678889999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHH
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll 390 (480)
++.+ |+. .+.|++++.++...++..++...+..+.++. +.++..+ +-++..+.+++
T Consensus 156 ~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l 212 (327)
T 1iqp_A 156 PIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA-EGDMRRAINIL 212 (327)
T ss_dssp HHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC-CCCHHHHHHHH
Confidence 9999 886 8999999999999999988766555444433 4444443 33444444443
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=7.5e-16 Score=155.10 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=107.7
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHH
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLK 267 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~ 267 (480)
.+++++|.+++++.+...+.. .+++||+||||||||++|+++|+.++.+++.++++......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 357789999988877755432 24899999999999999999999999999999986433322221
Q ss_pred HH--HH-------hhcC---CcEEEEecccccccCcccccchhhhhhhcccc-------cccccCCceEEEEecCCCc--
Q 011664 268 SL--LL-------QTTS---KSVILIEDLDRFLVEKPAAVSLSGVLNFMDGV-------LNSCCFEERVMVFTMNSKD-- 326 (480)
Q Consensus 268 ~l--~~-------~~~~---~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~-------~~~~~~~~~ivI~tTN~~~-- 326 (480)
.. +. .... .+||||||+|.+.+ ...+.|+..|+.- .. ......++|+|+|..+
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~-----~~~~~Ll~~l~~~~~~~~g~~~-~~~~~~~viat~np~~~~ 163 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA-----KVQSALLECMQEKQVTIGDTTY-PLDNPFLVLATQNPVEQE 163 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH-----HHHHHHHHHHHHSEEEETTEEE-ECCSSCEEEEEECTTCCS
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCCH-----HHHHHHHHHHhcCceeeCCEEE-ECCCCEEEEEecCCCccc
Confidence 10 00 0112 37999999998732 3345555555421 11 1133456677777443
Q ss_pred ---cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 011664 327 ---HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 327 ---~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~ 362 (480)
.++++|++ ||+.++++++|+.+++.+|++..+..
T Consensus 164 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 164 GTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 38999999 99999999999999999999998764
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=6.6e-15 Score=149.11 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=138.1
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVAD 262 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~ 262 (480)
.-.|.+|++++|.+.+++.+...+..-.. .| ..+..++|+||||||||+|++++|++++.++...+.+....
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 34677999999998877776654433211 12 23457999999999999999999999999988877766666
Q ss_pred hHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccc------ccc-------cCCceEEEEecCCCccCc
Q 011664 263 DADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL------NSC-------CFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 263 ~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~------~~~-------~~~~~ivI~tTN~~~~LD 329 (480)
..++..++.....+.|+||||++.+.. . ....|+..+.... ... ......++.+||.+..|+
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~--~---~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls 164 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK--A---VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH--H---HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH--H---HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCC
Confidence 666766665556788999999998853 1 1122333332110 000 011245667899999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHHHHh
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll~~a 393 (480)
+++++ ||...+.+++++.+++.++++......+..+.++ +..++... +-++.++..++..+
T Consensus 165 ~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 165 SPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRV 226 (334)
T ss_dssp HHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHH
T ss_pred HHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 99999 9998999999999999999998876555555554 45676665 44677777777654
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=3.1e-16 Score=159.47 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=125.9
Q ss_pred CccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCC
Q 011664 188 TFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLS 258 (480)
Q Consensus 188 ~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s 258 (480)
.+++++|.++..+.+.+.+...+. ...+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 458899999988888765533211 1245689999999999999999999988 7889999987
Q ss_pred CcCChH----------------------H-HHHHHHh---hcCCcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 259 RVADDA----------------------D-LKSLLLQ---TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 259 ~~~~~~----------------------~-l~~l~~~---~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
...+.. . +..++.. ...++||+|||+|.+.........+..+++.++....
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~--- 164 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD--- 164 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC---
Confidence 644321 2 1222221 2347899999999986432123344555555443220
Q ss_pred CCceEEEEecCCC---ccCcccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc--CCCCCchh-HHHHHHhCC--CCCH
Q 011664 313 FEERVMVFTMNSK---DHVDQALLRPGRIDV-HIHFPLCDFSSFKTLASSYLGL--KDHKLFPQ-VEEIFQNGS--SLSP 383 (480)
Q Consensus 313 ~~~~ivI~tTN~~---~~LD~aLlrpGRfd~-~I~~~~p~~~~r~~il~~~l~~--~~~~l~~~-i~~l~~~~~--g~s~ 383 (480)
....++|++||.+ +.+++++.+ ||.. .++|++|+.++...+++..+.. .+..+.++ ++.++..+. .-.+
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 242 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDA 242 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCH
T ss_pred CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCH
Confidence 2456788888877 778999999 9874 8999999999999999988753 23334333 344444432 1345
Q ss_pred HHHHHHHHH
Q 011664 384 AEIGELMIA 392 (480)
Q Consensus 384 adI~~ll~~ 392 (480)
..+.++|..
T Consensus 243 r~~~~~l~~ 251 (387)
T 2v1u_A 243 RRALDLLRV 251 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.6e-15 Score=150.78 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=128.8
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLS 258 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s 258 (480)
..|.+|++++|.++.++.+.+.+.. + ..+. +||+||||||||++|+++|+.+ +.+++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4678899999999999888765431 2 2233 9999999999999999999986 3568888887
Q ss_pred CcCChHHHHHHHHhh--------c-CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCc
Q 011664 259 RVADDADLKSLLLQT--------T-SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVD 329 (480)
Q Consensus 259 ~~~~~~~l~~l~~~~--------~-~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD 329 (480)
+..+...++.++... . .+.||+|||+|.+.. .....|+..++.. ....++|++||.+..++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----~~~~~L~~~le~~-----~~~~~~il~~~~~~~l~ 151 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----GAQQALRRTMELY-----SNSTRFAFACNQSNKII 151 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----HHHHTTHHHHHHT-----TTTEEEEEEESCGGGSC
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----HHHHHHHHHHhcc-----CCCceEEEEeCChhhch
Confidence 765555565554321 2 378999999998742 2234566666432 34567888899999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll 390 (480)
+++.+ |+. .+.|++|+.++...++..++...+..+.++ ++.++..+ +-++..+.+++
T Consensus 152 ~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~a~~~l 209 (323)
T 1sxj_B 152 EPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA-EGDMRQAINNL 209 (323)
T ss_dssp HHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred hHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 99999 886 899999999999999998876555444443 34555544 33444444433
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=9.1e-17 Score=146.23 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++|+++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 356799999999877777654421 235689999999999999999999986 778888
Q ss_pred EeCCCcCC--------hHHHHHHHH---hhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecC
Q 011664 255 VDLSRVAD--------DADLKSLLL---QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMN 323 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~---~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN 323 (480)
++++.+.. ...+..++. ....+.+|+|||+|.+.+.+........+++.+..+.. ....++|++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~---~~~~~ii~~~~ 160 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA---RGELRCIGATT 160 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH---TTCSCEEEEEC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh---cCCeeEEEecC
Confidence 88655421 112344443 23467899999999987443211111222333322222 34567888888
Q ss_pred CCc-----cCcccccCCCceeEEEEcCCCC
Q 011664 324 SKD-----HVDQALLRPGRIDVHIHFPLCD 348 (480)
Q Consensus 324 ~~~-----~LD~aLlrpGRfd~~I~~~~p~ 348 (480)
.++ .+|+++++ ||+ .|+++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred HHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 765 68999999 998 59999986
No 58
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=2.7e-15 Score=152.44 Aligned_cols=182 Identities=18% Similarity=0.267 Sum_probs=131.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--------------
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY-------------- 250 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~-------------- 250 (480)
.|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 577899999999999888876532 1 23457999999999999999999997754
Q ss_pred ----------cEEEEeCCCcCChHHHHHHHHhhc------CCcEEEEecccccccCcccccchhhhhhhcccccccccCC
Q 011664 251 ----------DVYDVDLSRVADDADLKSLLLQTT------SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFE 314 (480)
Q Consensus 251 ----------~~~~i~~s~~~~~~~l~~l~~~~~------~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~ 314 (480)
+++.++.+.-.+...++.++.... .+.||+|||+|.+. ....+.|+..++.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----~~~~~~Ll~~le~~-----~~ 148 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----RHSFNALLKTLEEP-----PE 148 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----HHHHHHHHHHHHSC-----CS
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----HHHHHHHHHHHhcC-----CC
Confidence 345555543233344566654432 46899999999873 23446677776542 34
Q ss_pred ceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchh-HHHHHHhCCCCCHHHHHHHHHH
Q 011664 315 ERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQ-VEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 315 ~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~-i~~l~~~~~g~s~adI~~ll~~ 392 (480)
..++|++||.+..+.+++++ |+ ..+++++|+.++...++..++...+..+.++ ++.++..+ +-++.++.+++..
T Consensus 149 ~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~-~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 149 HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQ 223 (373)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS-SSCHHHHHHHHHH
T ss_pred ceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 67888889999999999998 87 6899999999999999998886655555544 35566655 4466666665543
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=9.9e-16 Score=161.12 Aligned_cols=193 Identities=14% Similarity=0.230 Sum_probs=128.8
Q ss_pred CCCCCCCccccc-cChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEE
Q 011664 182 PFTHPSTFDTIS-METDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDV 255 (480)
Q Consensus 182 ~~~~~~~~~~i~-g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i 255 (480)
++.+..+|++++ |..... ....+..+...+ +. ..+++||||||||||+|++++|+++ +.+++++
T Consensus 97 ~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 455667899987 654432 222333333322 21 4689999999999999999999988 8889999
Q ss_pred eCCCcCChH-------HHHHHHHhhc-CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc
Q 011664 256 DLSRVADDA-------DLKSLLLQTT-SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH 327 (480)
Q Consensus 256 ~~s~~~~~~-------~l~~l~~~~~-~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~ 327 (480)
++..+..+- ....+..... .++||||||+|.+..... ....|+..++.+.. .+..+||.|.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~---~q~~l~~~l~~l~~---~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG---VQTELFHTFNELHD---SGKQIVICSDREPQK 240 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH---HHHHHHHHHHHHHT---TTCEEEEEESSCGGG
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH---HHHHHHHHHHHHHH---CCCeEEEEECCCHHH
Confidence 876653210 0111122234 789999999999864322 33455555554433 234455545455655
Q ss_pred ---CcccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccCCCCCchhH-HHHHHhCCCCCHHHHHHHHHHh
Q 011664 328 ---VDQALLRPGRID--VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQV-EEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 328 ---LD~aLlrpGRfd--~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i-~~l~~~~~g~s~adI~~ll~~a 393 (480)
++++|++ ||+ ..+.+++|+.+++..+++..+...+..+.+++ +.++... +-++.++..++..+
T Consensus 241 l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKL 309 (440)
T ss_dssp CSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 7899999 996 78999999999999999998876566666554 5666655 45777777766543
No 60
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.61 E-value=7.6e-15 Score=143.12 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=124.3
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeCCCcCCh
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDLSRVADD 263 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~s~~~~~ 263 (480)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++++.+..+
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 4799999999999988877765432 245899999999999999999999875 68999999887432
Q ss_pred HHHHHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc-----ccCCceEEEE
Q 011664 264 ADLKSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS-----CCFEERVMVF 320 (480)
Q Consensus 264 ~~l~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~-----~~~~~~ivI~ 320 (480)
.-...+|. ....+++|||||||.+.. .....|+..++.-. .. .......+|+
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~-----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~ 146 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----MVQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH-----HHHHHHHHHHHHCEECCCCC--CEECCCEEEE
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH-----HHHHHHHHHHHhCCeecCCCcccccCCeEEEE
Confidence 11112221 113468999999998843 23345666554211 00 0013456888
Q ss_pred ecCCC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhC-CCCCHHHHHHH
Q 011664 321 TMNSK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNG-SSLSPAEIGEL 389 (480)
Q Consensus 321 tTN~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~-~g~s~adI~~l 389 (480)
|||.+ ..++++|.+ ||. ..|.+|+.+. ++...+++.++.... ....... ..+++..+..+
T Consensus 147 atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~-------~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 147 ATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMC-------REIKLPLFPGFTERARETL 217 (265)
T ss_dssp EESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHH-------HHTTCSSCCCBCHHHHHHH
T ss_pred ecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHH-------HHhCCCcccCcCHHHHHHH
Confidence 88864 246788988 996 5677776654 455666666553110 0000001 26788777777
Q ss_pred HHHhhhcHHHHHHHHHHHHHh
Q 011664 390 MIANRNSPSRALKSVITALQT 410 (480)
Q Consensus 390 l~~a~~~~~~al~~~i~~~~~ 410 (480)
+...+....+.++.+++.+..
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHH
Confidence 766667778888888776643
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=8.4e-15 Score=155.18 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=117.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|.+|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 466899999999988887765431 235689999999999999999999986 788999
Q ss_pred EeCCC-cCC--hHHHHHHHHhh--cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc---
Q 011664 255 VDLSR-VAD--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD--- 326 (480)
Q Consensus 255 i~~s~-~~~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~--- 326 (480)
++++. +.+ +..++.+|... ..++||||| ......+.|+..|+ .....+|+|||.++
T Consensus 242 l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~~~a~~~L~~~L~-------~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AAIDASNILKPSLA-------RGELQCIGATTLDEYRK 305 (468)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC---------C--------CCCTT-------SSSCEEEEECCTTTTHH
T ss_pred eeCCccccchHHHHHHHHHHHHHhcCCeEEEEe---------CchhHHHHHHHhhc-------CCCEEEEecCCHHHHHH
Confidence 88862 222 23456666543 468999999 11112233444332 34577888998876
Q ss_pred --cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc----CCCCCchhH-HHHHHh-----CCCCCHHHHHHHHHH
Q 011664 327 --HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGL----KDHKLFPQV-EEIFQN-----GSSLSPAEIGELMIA 392 (480)
Q Consensus 327 --~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~----~~~~l~~~i-~~l~~~-----~~g~s~adI~~ll~~ 392 (480)
.+|++|+| ||. .|.|+.|+.+++..|++.++.. .+..+.++. ..++.. ...+.|.....++..
T Consensus 306 ~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~ 380 (468)
T 3pxg_A 306 YIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDE 380 (468)
T ss_dssp HHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHH
T ss_pred HhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHH
Confidence 68999999 998 5999999999999999988765 334444433 333332 223445555555543
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=7.1e-15 Score=149.94 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=111.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-----------CCcEEEEeC
Q 011664 189 FDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-----------SYDVYDVDL 257 (480)
Q Consensus 189 ~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----------~~~~~~i~~ 257 (480)
.++++|.++..+.+.+.+...+.. ..+++++|+||||||||++++++++++ +..++.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 388999999999998877665432 235689999999999999999999987 889999987
Q ss_pred CCcC-Ch-----------------------HH-HHHHHHhhc-CCcEEEEecccccccCcccccc-hhhhhhhccccccc
Q 011664 258 SRVA-DD-----------------------AD-LKSLLLQTT-SKSVILIEDLDRFLVEKPAAVS-LSGVLNFMDGVLNS 310 (480)
Q Consensus 258 s~~~-~~-----------------------~~-l~~l~~~~~-~~sII~IDEiD~l~~~~~~~~~-ls~lL~~ldg~~~~ 310 (480)
.... +. .. +..++.... .+.||+|||+|.+..... ... +..|+...
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~-~~~~l~~l~~~~------ 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG-GDIVLYQLLRSD------ 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT-SHHHHHHHHTSS------
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC-CceeHHHHhcCC------
Confidence 6543 21 11 222222222 233999999999864321 222 33333322
Q ss_pred ccCCceEEEEecCCC---ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 311 CCFEERVMVFTMNSK---DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 311 ~~~~~~ivI~tTN~~---~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
.+..+|+|||.+ +.+++++++ ||...++|++++.++...++..++.
T Consensus 163 ---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 163 ---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp ---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 356788888876 678999998 9877999999999999999998875
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=6.2e-15 Score=164.73 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=114.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.+.+|++++|.++..+.+.+.+. ...+.++||+||||||||++|+++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 35689999999988887765442 2246689999999999999999999876 677888
Q ss_pred EeCCCcCC--------hHHHHHHHHhhc--CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCC
Q 011664 255 VDLSRVAD--------DADLKSLLLQTT--SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS 324 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~~~~--~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~ 324 (480)
++++.+.. +..++.++.... .++||||||+|.+.+............+.+..+.. ..+..+|++||.
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~ 324 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTY 324 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECH
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCc
Confidence 88765442 334666765543 47999999999997654432112233333433333 345677888876
Q ss_pred Cc-----cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 325 KD-----HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 325 ~~-----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
++ .+|++|.| ||+ .+.|+.|+.+++.+|++.++.
T Consensus 325 ~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 43 57899999 998 799999999999999987654
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=1.3e-14 Score=162.01 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=113.7
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCC----CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCCh---
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRV----WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADD--- 263 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~----~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~--- 263 (480)
.++|.+++++.+...+... ..|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4778888888777665432 12321 23479999999999999999999999999999998876431
Q ss_pred ----------------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhccccc-cc-----ccCCceEEEEe
Q 011664 264 ----------------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-NS-----CCFEERVMVFT 321 (480)
Q Consensus 264 ----------------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-~~-----~~~~~~ivI~t 321 (480)
..+...+. ...++||||||||.+. ...++.|+..||.-. .. ....+.+||+|
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~-~~~~~vl~lDEi~~~~-----~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVI-KHPHAVLLLDEIEKAH-----PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHH-HCSSEEEEEETGGGSC-----HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred hhhcCCCCCCcCccccchHHHHHH-hCCCcEEEEeCccccC-----HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 11223332 3457999999999773 345677777776321 10 01145778999
Q ss_pred cCCCc-------------------------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 322 MNSKD-------------------------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 322 TN~~~-------------------------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
||.+. .++|+|++ ||+..|.|++|+.+++..|+..++.
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 99753 67889998 9999999999999999999998875
No 65
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=8.2e-15 Score=148.29 Aligned_cols=162 Identities=17% Similarity=0.237 Sum_probs=110.5
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-CC----------
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-SY---------- 250 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-~~---------- 250 (480)
..-+|.+|++++|++++++.+...+. ..|. .+. ++|+||||||||++++++|+++ +.
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD----------QPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT----------CTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh----------hCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 34478899999999998887765431 1122 233 9999999999999999999953 21
Q ss_pred ------------------cEEEEeCCCcCChH--HHHHHHHh----------------hcCCcEEEEecccccccCcccc
Q 011664 251 ------------------DVYDVDLSRVADDA--DLKSLLLQ----------------TTSKSVILIEDLDRFLVEKPAA 294 (480)
Q Consensus 251 ------------------~~~~i~~s~~~~~~--~l~~l~~~----------------~~~~sII~IDEiD~l~~~~~~~ 294 (480)
+++.++.+...... .++..+.. ...|.||+|||++.+. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-----~ 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-----K 148 (354)
T ss_dssp ------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----H
T ss_pred eecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----H
Confidence 13334433221111 24444322 2257799999999852 2
Q ss_pred cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCc
Q 011664 295 VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLF 368 (480)
Q Consensus 295 ~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~ 368 (480)
.....|+..++.. ..+..+|++||.++.+.+++++ |+ ..+.|++|+.++...+++..+...+..+.
T Consensus 149 ~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 149 DAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp HHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 3345666666543 2356788899999999999999 88 78999999999999999988765444433
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.58 E-value=9.6e-15 Score=163.32 Aligned_cols=160 Identities=16% Similarity=0.253 Sum_probs=114.0
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChH--
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDA-- 264 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~-- 264 (480)
+.++|.+++++.+.+.+......-. . ...+..++||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 4688999999988887765422100 0 01122369999999999999999999987 6889999998876532
Q ss_pred ---HHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccc------cccCCceEEEEecCCCcc--------
Q 011664 265 ---DLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN------SCCFEERVMVFTMNSKDH-------- 327 (480)
Q Consensus 265 ---~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~------~~~~~~~ivI~tTN~~~~-------- 327 (480)
.+...+ +...++||||||||.+. ....+.|+..|+.-.- .....+.+||+|||.+..
T Consensus 567 ~~~~l~~~~-~~~~~~vl~lDEi~~~~-----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 567 SGGQLTEKV-RRKPYSVVLLDAIEKAH-----PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp C---CHHHH-HHCSSSEEEEECGGGSC-----HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred ccchhhHHH-HhCCCeEEEEeCccccC-----HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 222222 23467899999999773 3455777777764211 011345689999996544
Q ss_pred ----CcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 328 ----VDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 328 ----LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
+.|+|+. ||+..|.|++|+.+++..|+..++.
T Consensus 641 ~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 641 LKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 7888888 9999999999999999999988874
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=7.4e-15 Score=148.06 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=100.4
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC-------------
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY------------- 250 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~------------- 250 (480)
.++.+|++++|.+++++.+..... . +...++||+||||||||++|+++|+.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 366789999999987765432211 1 12346999999999999999999998863
Q ss_pred --------------------cEEEEeCCCcCChHH------HHHHHHh-----------hcCCcEEEEecccccccCccc
Q 011664 251 --------------------DVYDVDLSRVADDAD------LKSLLLQ-----------TTSKSVILIEDLDRFLVEKPA 293 (480)
Q Consensus 251 --------------------~~~~i~~s~~~~~~~------l~~l~~~-----------~~~~sII~IDEiD~l~~~~~~ 293 (480)
+++.+..+. .... +...+.. ...++||||||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 122222111 1111 1222211 12478999999998742
Q ss_pred ccchhhhhhhccc----cccc----ccCCceEEEEecCCCc-cCcccccCCCceeEEEEcCCC-CHHHHHHHHHHHh
Q 011664 294 AVSLSGVLNFMDG----VLNS----CCFEERVMVFTMNSKD-HVDQALLRPGRIDVHIHFPLC-DFSSFKTLASSYL 360 (480)
Q Consensus 294 ~~~ls~lL~~ldg----~~~~----~~~~~~ivI~tTN~~~-~LD~aLlrpGRfd~~I~~~~p-~~~~r~~il~~~l 360 (480)
.....|+..|+. +... ......++|+|||..+ .++++|++ ||+.++++++| +.+.+..|++..+
T Consensus 159 -~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 -HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp -HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 234555655542 1110 0012567788899644 89999999 99999999999 6777878887754
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-14 Score=146.72 Aligned_cols=129 Identities=11% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEEEeCCCcCCh----------------------HHHHHHH
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYDVDLSRVADD----------------------ADLKSLL 270 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~i~~s~~~~~----------------------~~l~~l~ 270 (480)
.+.+++||||||||||++++++++++ .+.+++++|..+.+. ..+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 56789999999999999999999988 356888997665432 2345555
Q ss_pred Hh----hcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCcc----CcccccCCCcee-EE
Q 011664 271 LQ----TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDH----VDQALLRPGRID-VH 341 (480)
Q Consensus 271 ~~----~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~----LD~aLlrpGRfd-~~ 341 (480)
.. ...+.||+|||+|.+. .+..+..|++... ......+||+++|..+. |++++++ ||. .+
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~----~q~~L~~l~~~~~-----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~ 192 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL----SEKILQYFEKWIS-----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTE 192 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC----CTHHHHHHHHHHH-----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEE
T ss_pred HHhhhccCCceEEEEecHHHhh----cchHHHHHHhccc-----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceE
Confidence 54 2457899999999996 2334444444321 11345678888887643 5777888 987 68
Q ss_pred EEcCCCCHHHHHHHHHHHhcc
Q 011664 342 IHFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 342 I~~~~p~~~~r~~il~~~l~~ 362 (480)
|.|++++.++...|++..+..
T Consensus 193 i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 193 IKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EECCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=6e-14 Score=142.96 Aligned_cols=191 Identities=10% Similarity=0.017 Sum_probs=128.7
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCCcCC
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSRVAD 262 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~~~~ 262 (480)
..+++++|.++..+.+.+.+...+... .+..+.++|+||||||||++++++++.+ +..++.++++...+
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 344889999999999988777654431 1112379999999999999999999988 67889999766443
Q ss_pred hHH--------------------------HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCce
Q 011664 263 DAD--------------------------LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEER 316 (480)
Q Consensus 263 ~~~--------------------------l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ 316 (480)
... +...+.....|.||+|||+|.+ +...+..|+..++.... ....+.
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~~~~~~~L~~~~~~~~~-~~~~~~ 160 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----APDILSTFIRLGQEADK-LGAFRI 160 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----CHHHHHHHHHHTTCHHH-HSSCCE
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----chHHHHHHHHHHHhCCC-CCcCCE
Confidence 211 1111222345889999999988 23445566666644321 001356
Q ss_pred EEEEecCCC---ccCcccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc--CCCCCch-hHHHHHHhCC--------CC
Q 011664 317 VMVFTMNSK---DHVDQALLRPGRIDV-HIHFPLCDFSSFKTLASSYLGL--KDHKLFP-QVEEIFQNGS--------SL 381 (480)
Q Consensus 317 ivI~tTN~~---~~LD~aLlrpGRfd~-~I~~~~p~~~~r~~il~~~l~~--~~~~l~~-~i~~l~~~~~--------g~ 381 (480)
.+|++||.+ +.+++.+.+ ||.. .++|++++.++...++...+.. ....+.+ .++.++..+. +-
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred EEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 788888877 678888888 8874 8999999999999999887753 1223333 3455655552 23
Q ss_pred CHHHHHHHHHH
Q 011664 382 SPAEIGELMIA 392 (480)
Q Consensus 382 s~adI~~ll~~ 392 (480)
.+..+.++|..
T Consensus 239 ~~r~~~~~l~~ 249 (389)
T 1fnn_A 239 DARLAIDILYR 249 (389)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45555555544
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.5e-14 Score=142.91 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=116.3
Q ss_pred CCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC-----CcEEEEeCC
Q 011664 184 THPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS-----YDVYDVDLS 258 (480)
Q Consensus 184 ~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~-----~~~~~i~~s 258 (480)
..|.+|++++|++.+++.|...+. . |. .+ .+||+||||||||++++++|+.+. ..+..++.+
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 478899999999988887765443 1 22 23 399999999999999999999863 247778877
Q ss_pred CcCChHHHHHHH---Hhh-----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcc
Q 011664 259 RVADDADLKSLL---LQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQ 330 (480)
Q Consensus 259 ~~~~~~~l~~l~---~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~ 330 (480)
+..+...++..+ .+. ..+.|++|||+|.+.. .....|+..++.. .....+|++||.+..+.+
T Consensus 86 ~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----~~~~~L~~~le~~-----~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 86 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----AAQNALRRVIERY-----TKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----HHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCH
T ss_pred ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----HHHHHHHHHHhcC-----CCCeEEEEEecCccccch
Confidence 655544555443 221 2368999999998842 2345566666543 235667888999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCch
Q 011664 331 ALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFP 369 (480)
Q Consensus 331 aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~ 369 (480)
++++ |+. .+.|+.++.++....+...+...+..+.+
T Consensus 156 ~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~ 191 (340)
T 1sxj_C 156 ALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP 191 (340)
T ss_dssp HHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH
T ss_pred hHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 9999 986 78999999998888888777544444443
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=1.2e-14 Score=164.52 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=116.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.|.+|++++|.++..+.+.+.+. . ..++++||+||||||||++|+++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 35689999999987777766442 1 235689999999999999999999987 889999
Q ss_pred EeCCCcCC--------hHHHHHHHHhh---cCCcEEEEecccccccCcccc--cch-hhhhhhcccccccccCCceEEEE
Q 011664 255 VDLSRVAD--------DADLKSLLLQT---TSKSVILIEDLDRFLVEKPAA--VSL-SGVLNFMDGVLNSCCFEERVMVF 320 (480)
Q Consensus 255 i~~s~~~~--------~~~l~~l~~~~---~~~sII~IDEiD~l~~~~~~~--~~l-s~lL~~ldg~~~~~~~~~~ivI~ 320 (480)
++++.+.. +..+..++... ..++||||||+|.+.+..... ... +.|...+ . ..+..+|+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l----~---~~~i~~I~ 304 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL----A---RGELRLIG 304 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH----H---TTCCCEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH----h---CCCeEEEE
Confidence 99887642 22355666543 367899999999987543322 111 2222222 2 24566788
Q ss_pred ecCCCc----cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc----CCCCCchh-HHHHHH-----hCCCCCHHHH
Q 011664 321 TMNSKD----HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGL----KDHKLFPQ-VEEIFQ-----NGSSLSPAEI 386 (480)
Q Consensus 321 tTN~~~----~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~----~~~~l~~~-i~~l~~-----~~~g~s~adI 386 (480)
+||.++ .+|++|+| ||+. |.++.|+.+++.+|++.++.. .+..+.++ +..++. .+..+.|...
T Consensus 305 at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred ecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 888664 47999999 9985 999999999999999876642 23333332 233332 1345667666
Q ss_pred HHHHHH
Q 011664 387 GELMIA 392 (480)
Q Consensus 387 ~~ll~~ 392 (480)
..++..
T Consensus 382 i~llde 387 (854)
T 1qvr_A 382 IDLIDE 387 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.6e-14 Score=146.49 Aligned_cols=193 Identities=15% Similarity=0.179 Sum_probs=126.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC------CCcEEEEeCC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM------SYDVYDVDLS 258 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l------~~~~~~i~~s 258 (480)
+...+++++|.++..+.+.+.+...+.. ..++.++|+||||||||++++++++.+ +..++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3445688999999888887655432211 235689999999999999999999988 8889999864
Q ss_pred CcCC----------------------hHH-HHH---HHHhhcCCcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 259 RVAD----------------------DAD-LKS---LLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 259 ~~~~----------------------~~~-l~~---l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
.... ... +.. .+.....|.||+|||+|.+.... ....+..++..++...
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-~~~~l~~l~~~~~~~~---- 160 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-NDDILYKLSRINSEVN---- 160 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-CSTHHHHHHHHHHSCC----
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-cCHHHHHHhhchhhcC----
Confidence 3211 122 122 22222348999999999986432 1344566666665431
Q ss_pred CCceEEEEecCCC---ccCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhcc--CCCCCchhH-HHHHHhCC--CCCH
Q 011664 313 FEERVMVFTMNSK---DHVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLGL--KDHKLFPQV-EEIFQNGS--SLSP 383 (480)
Q Consensus 313 ~~~~ivI~tTN~~---~~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~~--~~~~l~~~i-~~l~~~~~--g~s~ 383 (480)
..+..+|++||.+ +.+++++.+ ||. ..+++++++.++..+++...+.. ....+.+++ +.++..+. .-.+
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCH
Confidence 3467788888876 567888888 775 58999999999999999887642 123344433 34444332 1455
Q ss_pred HHHHHHHHHh
Q 011664 384 AEIGELMIAN 393 (480)
Q Consensus 384 adI~~ll~~a 393 (480)
..+.++|..+
T Consensus 239 r~~~~ll~~a 248 (386)
T 2qby_A 239 RRALDLLRVS 248 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=5.9e-14 Score=156.92 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=118.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----------CCcEEE
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----------SYDVYD 254 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----------~~~~~~ 254 (480)
.+..+++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +..++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 456799999999999888765431 245689999999999999999999986 788888
Q ss_pred EeCC-CcCC--hHHHHHHHHhh--cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc---
Q 011664 255 VDLS-RVAD--DADLKSLLLQT--TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD--- 326 (480)
Q Consensus 255 i~~s-~~~~--~~~l~~l~~~~--~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~--- 326 (480)
+++. .+.+ +..++.+|... ..++||||| ......+.|+..|+ .....+|+|||..+
T Consensus 242 ~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~~~~~~~~L~~~l~-------~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AAIDASNILKPSLA-------RGELQCIGATTLDEYRK 305 (758)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC---------C--------CCCTT-------SSSCEEEEECCTTTTHH
T ss_pred ecccccccchHHHHHHHHHHHHHhcCCEEEEEc---------CchhHHHHHHHHHh-------cCCEEEEeCCChHHHHH
Confidence 8872 1222 23466776543 478999999 11122233444332 34677888998887
Q ss_pred --cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc----CCCCCchhH-HHHHH---h--CCCCCHHHHHHHHHH
Q 011664 327 --HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGL----KDHKLFPQV-EEIFQ---N--GSSLSPAEIGELMIA 392 (480)
Q Consensus 327 --~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~----~~~~l~~~i-~~l~~---~--~~g~s~adI~~ll~~ 392 (480)
.+|++++| ||. .|.|+.|+.+++..|++.++.. .+..+.++. ..++. . +.++.|.....++..
T Consensus 306 ~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~ 380 (758)
T 3pxi_A 306 YIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDE 380 (758)
T ss_dssp HHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHH
T ss_pred HhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHH
Confidence 79999999 995 6999999999999999987765 233444332 33322 1 346667766665544
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.49 E-value=9.5e-14 Score=138.99 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=127.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADL 266 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l 266 (480)
++++|.....+.+.+.+.... ....++||+||||||||++|+++++.. +.+|+.++|+.+..+---
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 357888888888887776542 234579999999999999999999965 678999999877532211
Q ss_pred HHHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhccccc-----cc-ccCCceEEEEecC
Q 011664 267 KSLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVL-----NS-CCFEERVMVFTMN 323 (480)
Q Consensus 267 ~~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~-----~~-~~~~~~ivI~tTN 323 (480)
..+|. ....+++|||||||.+.. .....|+..++... +. .......||+|||
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~-----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH-----HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH-----HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 22221 112458999999998843 23455666665321 00 0023456888888
Q ss_pred CC-------ccCcccccCCCcee-EEEEcCCCC--HHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SK-------DHVDQALLRPGRID-VHIHFPLCD--FSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~-------~~LD~aLlrpGRfd-~~I~~~~p~--~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.+ ..++++|.. ||. ..|.+|+.. .++...++..++.... .........+++..+..+....
T Consensus 146 ~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~-------~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 146 RDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFA-------ERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp SCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHH-------HHTTCCCCCBCHHHHHHHHHCC
T ss_pred ccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHH-------HHhccCccCCCHHHHHHHHcCC
Confidence 65 235677777 885 556676665 3455566666653210 0000112468888888777777
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 011664 394 RNSPSRALKSVITALQTD 411 (480)
Q Consensus 394 ~~~~~~al~~~i~~~~~~ 411 (480)
+...++.++.+++.+...
T Consensus 217 wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVL 234 (304)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 778888888888776554
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=7.6e-14 Score=124.24 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=89.8
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLK 267 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~ 267 (480)
+++|.....+.+.+.+.... .....+||+||||||||++|+++++.. +.+++ ++++.+.......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 56788888888887776542 134579999999999999999999987 77899 9999877665555
Q ss_pred HHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC-------ccCcccccCCCcee-
Q 011664 268 SLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK-------DHVDQALLRPGRID- 339 (480)
Q Consensus 268 ~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~-------~~LD~aLlrpGRfd- 339 (480)
..+..+ .+++|||||||.+.. .....|+..|... .....+|+|||.+ ..+++.|.. |+.
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~-----~~q~~Ll~~l~~~-----~~~~~~I~~t~~~~~~~~~~~~~~~~L~~--rl~~ 136 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR-----EQQYHLVQLQSQE-----HRPFRLIGIGDTSLVELAASNHIIAELYY--CFAM 136 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH-----HHHHHHHHHHHSS-----SCSSCEEEEESSCHHHHHHHSCCCHHHHH--HHHH
T ss_pred cHHHHc-CCcEEEEcChHHCCH-----HHHHHHHHHHhhc-----CCCEEEEEECCcCHHHHHHcCCCCHHHHH--HhcC
Confidence 556544 568999999998843 2345667766332 2334577788754 134455554 543
Q ss_pred EEEEcCC
Q 011664 340 VHIHFPL 346 (480)
Q Consensus 340 ~~I~~~~ 346 (480)
..|++|+
T Consensus 137 ~~i~lPp 143 (145)
T 3n70_A 137 TQIACLP 143 (145)
T ss_dssp HEEECCC
T ss_pred CEEeCCC
Confidence 3566665
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=1.1e-13 Score=156.63 Aligned_cols=160 Identities=18% Similarity=0.284 Sum_probs=112.7
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHH-
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDAD- 265 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~- 265 (480)
+.|+|.+++++.+...+......- .. ...+..++||+||||||||++|+++|+.+ +.+++.++++.+.....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~---~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGC---SC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhccc---CC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 567899988888887775432110 00 01123479999999999999999999988 78999999987654211
Q ss_pred ------------------HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccc------cccCCceEEEEe
Q 011664 266 ------------------LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLN------SCCFEERVMVFT 321 (480)
Q Consensus 266 ------------------l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~------~~~~~~~ivI~t 321 (480)
+...+ ....++||||||||.+. ...++.|+..|+.-.- .....+.+||+|
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~-~~~~~~vl~lDEi~~l~-----~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAV-RRRPYSVILFDEIEKAH-----PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp GGC--------------CHHHHH-HHCSSEEEEESSGGGSC-----HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred HHHcCCCCCCcCccccchHHHHH-HhCCCeEEEEecccccC-----HHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 11111 22456899999999763 3456777777763211 011246789999
Q ss_pred cCCC--------------------------ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 011664 322 MNSK--------------------------DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLG 361 (480)
Q Consensus 322 TN~~--------------------------~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~ 361 (480)
||.. ..+.|+|+. ||+..+.+++|+.++...|+..++.
T Consensus 708 sn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 708 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred cCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 9962 235677777 9999999999999999999988874
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=2.4e-13 Score=144.95 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=95.2
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCCCcCChHHH--
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLSRVADDADL-- 266 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s~~~~~~~l-- 266 (480)
.++|.+++++.+...+. ...++||+||||||||++|+++|+.++. ++..+.+.- ...+++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 36788887776654332 1348999999999999999999998854 455555431 111111
Q ss_pred ---------HHHHHhh-----cCCcEEEEecccccccCcccccchhhhhhhccc-------ccccccCCceEEEEecCCC
Q 011664 267 ---------KSLLLQT-----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG-------VLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 267 ---------~~l~~~~-----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg-------~~~~~~~~~~ivI~tTN~~ 325 (480)
...+... ..++|||||||+.+. ....+.|+..|+. ... ..+.+++|+|||.+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-----~~~q~~LL~~lee~~v~i~G~~~--~~~~~~iI~ATN~l 159 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-----PAILNTLLTAINERQFRNGAHVE--KIPMRLLVAASNEL 159 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC-----HHHHHHHHHHHHSSEEECSSSEE--ECCCCEEEEEESSC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc-----HHHHHHHHHHHHHHhccCCCCcC--CcchhhhhhccccC
Confidence 1112111 146799999998652 3455677777742 211 12345678888853
Q ss_pred cc---CcccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 011664 326 DH---VDQALLRPGRIDVHIHFPLCDF-SSFKTLASSYLG 361 (480)
Q Consensus 326 ~~---LD~aLlrpGRfd~~I~~~~p~~-~~r~~il~~~l~ 361 (480)
.. ..+++++ ||..++++|+|+. +++..|++....
T Consensus 160 pe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 160 PEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred CCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 22 3459999 9999999999997 778888877653
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.46 E-value=2.1e-12 Score=130.63 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=109.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC------------------------CcEEEEeCC---CcCChHHHHHHHHhh--
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS------------------------YDVYDVDLS---RVADDADLKSLLLQT-- 273 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~------------------------~~~~~i~~s---~~~~~~~l~~l~~~~-- 273 (480)
.+.++||+||||||||++|+++|+.+. .+++.++.. .-.+-..++.++...
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999998764 346666653 233445577766543
Q ss_pred ----cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCH
Q 011664 274 ----TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDF 349 (480)
Q Consensus 274 ----~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~ 349 (480)
..+.|++|||+|.+.. ...+.|+..++.- ....++|++||.++.+.|++++ |+. .++|++|+.
T Consensus 103 ~~~~~~~kvviIdead~l~~-----~a~naLLk~lEep-----~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~ 169 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD-----AAANALLKTLEEP-----PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPE 169 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH-----HHHHHHHHHHTSC-----CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCH
T ss_pred ccccCCcEEEEECchhhcCH-----HHHHHHHHHhcCC-----CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCH
Confidence 2468999999998842 3356788877642 3567888899999999999999 885 799999999
Q ss_pred HHHHHHHHHHhccCCCCCch-hHHHHHHhCCCCCHHHHHHHH
Q 011664 350 SSFKTLASSYLGLKDHKLFP-QVEEIFQNGSSLSPAEIGELM 390 (480)
Q Consensus 350 ~~r~~il~~~l~~~~~~l~~-~i~~l~~~~~g~s~adI~~ll 390 (480)
++...++.... ...+ .++.++... +-++..+.+++
T Consensus 170 ~~~~~~L~~~~-----~~~~~~~~~l~~~s-~G~~r~a~~~l 205 (334)
T 1a5t_A 170 QYAVTWLSREV-----TMSQDALLAALRLS-AGSPGAALALF 205 (334)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHT-TTCHHHHHHTT
T ss_pred HHHHHHHHHhc-----CCCHHHHHHHHHHc-CCCHHHHHHHh
Confidence 99998888775 2233 345566555 55666665554
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.41 E-value=1.2e-13 Score=122.64 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=88.1
Q ss_pred ccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHH
Q 011664 191 TISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLL 270 (480)
Q Consensus 191 ~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~ 270 (480)
+++|.+...+.+.+.+..+.. ...++||+||||||||++|+++++..+ +++.++++.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 467888888888887776532 235799999999999999999999888 9999998875432 134444
Q ss_pred HhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC-cc----CcccccCCCcee-EEEEc
Q 011664 271 LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK-DH----VDQALLRPGRID-VHIHF 344 (480)
Q Consensus 271 ~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~-~~----LD~aLlrpGRfd-~~I~~ 344 (480)
..+ .+++|||||+|.+.. .....|+..++... ..+..+|+|||.+ +. +++.|.. |+. ..|++
T Consensus 72 ~~a-~~~~l~lDei~~l~~-----~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~l 139 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYSR-----NIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEKLAG--LFSESVVRI 139 (143)
T ss_dssp HHT-TTSEEEEEECTTCCH-----HHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEE
T ss_pred HhC-CCCeEEEeChHHCCH-----HHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeC
Confidence 443 468999999998843 22344666665432 2345677777743 33 3445555 543 56777
Q ss_pred CCC
Q 011664 345 PLC 347 (480)
Q Consensus 345 ~~p 347 (480)
|+.
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=2.2e-13 Score=148.44 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=112.6
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC----CCcCC---
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL----SRVAD--- 262 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~----s~~~~--- 262 (480)
..|.|++++|+.+.-.+.. ..+............++||+||||||||++|+++|+.++..++.... ..+.+
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4578888877766422110 00000000011122279999999999999999999999876655321 11111
Q ss_pred -hH-----HHH-HHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccc---------cccccCCceEEEEecCCCc
Q 011664 263 -DA-----DLK-SLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGV---------LNSCCFEERVMVFTMNSKD 326 (480)
Q Consensus 263 -~~-----~l~-~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~~ivI~tTN~~~ 326 (480)
+. ... ..+. ...++|+||||||.+.. ...+.|+..|+.- .. .......||+|||.++
T Consensus 373 ~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~~-----~~q~~Ll~~le~~~i~i~~~g~~~-~~~~~~~vIaatNp~~ 445 (595)
T 3f9v_A 373 REKGTGEYYLEAGALV-LADGGIAVIDEIDKMRD-----EDRVAIHEAMEQQTVSIAKAGIVA-KLNARAAVIAAGNPKF 445 (595)
T ss_dssp SGGGTSSCSEEECHHH-HHSSSEECCTTTTCCCS-----HHHHHHHHHHHSSSEEEESSSSEE-EECCCCEEEEEECCTT
T ss_pred eccccccccccCCeeE-ecCCCcEEeehhhhCCH-----hHhhhhHHHHhCCEEEEecCCcEE-EecCceEEEEEcCCcC
Confidence 00 000 0111 12568999999998742 2345666666521 11 1123467889999886
Q ss_pred -------------cCcccccCCCcee-EEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHH
Q 011664 327 -------------HVDQALLRPGRID-VHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 327 -------------~LD~aLlrpGRfd-~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
.|+++|++ ||| ..+..++|+.+ ...|++..+...... .....+++.++..++..
T Consensus 446 G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~---------~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 446 GRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGK---------STKNIIDIDTLRKYIAY 513 (595)
T ss_dssp CCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCC---------SSSSTTCCTTTHHHHHH
T ss_pred CccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc---------ccccCCCHHHHHHHHHH
Confidence 89999999 998 56677788888 888888887654331 12346777777777765
Q ss_pred hh
Q 011664 393 NR 394 (480)
Q Consensus 393 a~ 394 (480)
++
T Consensus 514 ar 515 (595)
T 3f9v_A 514 AR 515 (595)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.33 E-value=4.3e-12 Score=156.21 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=101.5
Q ss_pred CceEEEEccCCCcHHHHH-HHHHHcCCCcEEEEeCCCcCChHHHHHHHHhh-----------------cCCcEEEEeccc
Q 011664 224 KRSYLLYGPSGTGKSSFA-AAMASFMSYDVYDVDLSRVADDADLKSLLLQT-----------------TSKSVILIEDLD 285 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La-~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~-----------------~~~sII~IDEiD 285 (480)
.+++||+||||||||++| +++++..+..++.++++...+...+...+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 468999999999999999 55666668899999999888777776666432 124799999999
Q ss_pred ccccCcccccchhhhhhhc---cccccccc-----CCceEEEEecCCCc-----cCcccccCCCceeEEEEcCCCCHHHH
Q 011664 286 RFLVEKPAAVSLSGVLNFM---DGVLNSCC-----FEERVMVFTMNSKD-----HVDQALLRPGRIDVHIHFPLCDFSSF 352 (480)
Q Consensus 286 ~l~~~~~~~~~ls~lL~~l---dg~~~~~~-----~~~~ivI~tTN~~~-----~LD~aLlrpGRfd~~I~~~~p~~~~r 352 (480)
....++.+.+...++|.++ .|++.... -.+..+|+|||+|. .|+|+++| || ..++++.|+.+++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSL 1423 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHH
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHH
Confidence 7655554444445555544 24433100 12467889999994 79999999 99 7899999999999
Q ss_pred HHHHHHHhc
Q 011664 353 KTLASSYLG 361 (480)
Q Consensus 353 ~~il~~~l~ 361 (480)
..|++.++.
T Consensus 1424 ~~I~~~il~ 1432 (2695)
T 4akg_A 1424 SQIYEIYYK 1432 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=2.1e-11 Score=122.20 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=95.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC------CCcEEEEeCCC-cCChHHHHHHHHhhc------CCcEEEEecccccccCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM------SYDVYDVDLSR-VADDADLKSLLLQTT------SKSVILIEDLDRFLVEK 291 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l------~~~~~~i~~s~-~~~~~~l~~l~~~~~------~~sII~IDEiD~l~~~~ 291 (480)
..+|||||||||||++|+++|+.+ +.+++.++.+. -.+-..++.++.... ...|++|||+|.+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt--- 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--- 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC---
Confidence 489999999999999999999863 46888888764 445556777665432 34799999999883
Q ss_pred ccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 292 PAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 292 ~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
....+.||..|+.- ++..++|++||.+..+.|++++ | .++|++|+.++....+...+
T Consensus 96 --~~a~naLLk~LEep-----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 96 --QQAANAFLKALEEP-----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --HHHHHHTHHHHHSC-----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCC-----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 23356788887642 4567888888999999999999 8 89999999999888888776
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=2.6e-12 Score=117.74 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=79.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCCc
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSRV 260 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~~ 260 (480)
.+.+|+++.+.....+.+.+.+..+... +......+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568999987655455555555555433 333346789999999999999999999876 666777765443
Q ss_pred CCh-------HHHHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 261 ADD-------ADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 261 ~~~-------~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
... .....++.....|.+|+|||++....+.... ..+.+.++.... .+..+|+|||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~---~~l~~ll~~~~~----~~~~ii~tsn~~ 143 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQR---ELISYIITYRYN----NLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHH---HHHHHHHHHHHH----TTCEEEEECCCC
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHH---HHHHHHHHHHHH----cCCCEEEEcCCC
Confidence 211 0011233445588999999998653222222 233344443322 345678888865
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=3e-11 Score=123.99 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=122.0
Q ss_pred CCCccccccChHHHHHHHHHH-HHHHhhhhHHhhhCCCCCceEEE--EccCCCcHHHHHHHHHHcC---------CCcEE
Q 011664 186 PSTFDTISMETDLKNRVKSDL-ESFLKAKHYYHRLGRVWKRSYLL--YGPSGTGKSSFAAAMASFM---------SYDVY 253 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l-~~~l~~~~~~~~~g~~~~rgiLL--~GPpGTGKT~La~aiA~~l---------~~~~~ 253 (480)
....+.++|.++..+.+.+.+ ....... ...++.+++ +||||||||+|++++++.+ +..++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 334578999999888888776 5433220 013457899 9999999999999999876 45677
Q ss_pred EEeCCCcCCh----------------------HH----HHHHHHhhcCCcEEEEecccccccCc-ccccchhhhhhhccc
Q 011664 254 DVDLSRVADD----------------------AD----LKSLLLQTTSKSVILIEDLDRFLVEK-PAAVSLSGVLNFMDG 306 (480)
Q Consensus 254 ~i~~s~~~~~----------------------~~----l~~l~~~~~~~sII~IDEiD~l~~~~-~~~~~ls~lL~~ldg 306 (480)
.+++....+. .. +...+.....|.||+|||+|.+.... .+...+..++..++.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 8886432211 11 11222223468899999999885421 122334445554443
Q ss_pred ccccccC--CceEEEEecCCCc---cCc---ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccC--CCCCch-hHHHHH
Q 011664 307 VLNSCCF--EERVMVFTMNSKD---HVD---QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLK--DHKLFP-QVEEIF 375 (480)
Q Consensus 307 ~~~~~~~--~~~ivI~tTN~~~---~LD---~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~--~~~l~~-~i~~l~ 375 (480)
... .+ ....+|++||.++ .++ +.+.+ |+...+.+++++.++..+++...+... ...+.+ .++.++
T Consensus 171 ~~~--~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 171 IPS--RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp SCC--TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred ccc--CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 221 02 3566777887654 345 66777 666569999999999999998765421 122333 345666
Q ss_pred HhCCC-----CCHHHHHHHHHH
Q 011664 376 QNGSS-----LSPAEIGELMIA 392 (480)
Q Consensus 376 ~~~~g-----~s~adI~~ll~~ 392 (480)
..+.. -.|..+.+++..
T Consensus 247 ~~~~~~~~~~G~p~~~~~l~~~ 268 (412)
T 1w5s_A 247 DVYGEDKGGDGSARRAIVALKM 268 (412)
T ss_dssp HHHCGGGTSCCCHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHH
Confidence 66540 456666666654
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.16 E-value=2.5e-11 Score=144.09 Aligned_cols=137 Identities=13% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhh----------hhHHhh------hC------------CCCCceEEEEccCCCc
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKA----------KHYYHR------LG------------RVWKRSYLLYGPSGTG 236 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~----------~~~~~~------~g------------~~~~rgiLL~GPpGTG 236 (480)
..++|+++.|.+++|+.+.+.+.+++.. ++.|+. .| .|..+.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3379999999999999999999999954 455655 22 2333449999999999
Q ss_pred HHHHHHHHHHcC---CCcEEEEeCCCcC----------------------ChHHHHHHHH--hhcCCcEEEEeccccccc
Q 011664 237 KSSFAAAMASFM---SYDVYDVDLSRVA----------------------DDADLKSLLL--QTTSKSVILIEDLDRFLV 289 (480)
Q Consensus 237 KT~La~aiA~~l---~~~~~~i~~s~~~----------------------~~~~l~~l~~--~~~~~sII~IDEiD~l~~ 289 (480)
||+||+++|.+. |.+...|+..... ++..++.++. +...||+||+|++|++++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999866 5556666554422 2334555553 456899999999999987
Q ss_pred Ccc-----cc-------cchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 290 EKP-----AA-------VSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 290 ~~~-----~~-------~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
.+. +. +.++++|..|+++.. ..+++|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~---~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK---QSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH---HTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhc---cCCeEEE-Eeccc
Confidence 632 11 137889999999876 3444444 77754
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.11 E-value=7.3e-11 Score=121.48 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=83.6
Q ss_pred hCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEeccccccc-Cccc---c
Q 011664 219 LGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLV-EKPA---A 294 (480)
Q Consensus 219 ~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~-~~~~---~ 294 (480)
++.+.++.++|+|||||||||+++++++.++..++.++... ......+....+..++++||++.+.. .+.. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~ 239 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQ 239 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccC
Confidence 36778889999999999999999999998887766543322 11222344455778899999998764 1110 1
Q ss_pred --cchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCC
Q 011664 295 --VSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 295 --~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
.+...+.+.+||. +.++++||+++.+ +++++|||++..++..+
T Consensus 240 ~~~~~~~l~~~ldG~--------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 240 GINNLDNLRDYLDGS--------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHHHHHTTHHHHHCS--------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cchHHHHHHHHhcCC--------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 1235567777664 3467889999999 79999999998887766
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=1.3e-10 Score=108.02 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCC-CCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRV-WKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV 260 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~-~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~ 260 (480)
.+.+|+++.+.....+.+.+.+..++... ... .+++++|+||||||||++++++++++ +.+++.++++.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999887654555555555555432 111 23789999999999999999999977 677888876543
Q ss_pred CCh-------HHHHHHHHhhcCCcEEEEecccccc
Q 011664 261 ADD-------ADLKSLLLQTTSKSVILIEDLDRFL 288 (480)
Q Consensus 261 ~~~-------~~l~~l~~~~~~~sII~IDEiD~l~ 288 (480)
... ..+..++.....+.+|+|||++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 210 1112233333456799999998653
No 88
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.07 E-value=3.6e-10 Score=123.27 Aligned_cols=53 Identities=28% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 183 FTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 183 ~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
..+|.+|++++|.+.+++.+...+. ....++|+||||||||++|+++|+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3467889999999988877665443 1247999999999999999999998753
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.01 E-value=2.4e-10 Score=114.51 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCCcC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSRVA 261 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~~~ 261 (480)
+.+|+++.+...-...+.+.+..++... +.....+++||||||||||+||+++|+++ |.++..++++.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999876544444555555555431 11135799999999999999999999865 4777777764332
Q ss_pred C-------hHHHHHHHHhhcCCcEEEEecccccc
Q 011664 262 D-------DADLKSLLLQTTSKSVILIEDLDRFL 288 (480)
Q Consensus 262 ~-------~~~l~~l~~~~~~~sII~IDEiD~l~ 288 (480)
. +..+...+.......+|+|||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1 11111222333456899999997653
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.97 E-value=1e-08 Score=102.35 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=107.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc-----
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV----- 260 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~----- 260 (480)
+...+.++|-++..+.|.+ +. . +.++++||+|+|||+|++.+++.++..++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3456778898877776664 32 1 379999999999999999999988777888886542
Q ss_pred CCh-----------------------------------------------HHHHHHH---Hhhc-CCcEEEEeccccccc
Q 011664 261 ADD-----------------------------------------------ADLKSLL---LQTT-SKSVILIEDLDRFLV 289 (480)
Q Consensus 261 ~~~-----------------------------------------------~~l~~l~---~~~~-~~sII~IDEiD~l~~ 289 (480)
.+. ..+..++ .+.. .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 110 0122222 2222 388999999998753
Q ss_pred CcccccchhhhhhhcccccccccCCceEEEEecCCCccC---------cccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 011664 290 EKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHV---------DQALLRPGRIDVHIHFPLCDFSSFKTLASSYL 360 (480)
Q Consensus 290 ~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~L---------D~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l 360 (480)
.. + .+++..+..+... ..+..+|+|+.....+ ...+. ||+...+.+++.+.++..+++...+
T Consensus 152 ~~-~----~~~~~~l~~~~~~--~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 152 LR-G----VNLLPALAYAYDN--LKRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp CT-T----CCCHHHHHHHHHH--CTTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred cC-c----hhHHHHHHHHHHc--CCCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHH
Confidence 11 1 1122222222220 1234556655433211 12232 4776799999999999999998776
Q ss_pred ccCCCCCchhHHHHHHhCCCCCHHHHHHHHH
Q 011664 361 GLKDHKLFPQVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 361 ~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~ 391 (480)
+..+..... ...+...+.| .|.-+..++.
T Consensus 223 ~~~~~~~~~-~~~i~~~t~G-~P~~l~~~~~ 251 (357)
T 2fna_A 223 QEADIDFKD-YEVVYEKIGG-IPGWLTYFGF 251 (357)
T ss_dssp HHHTCCCCC-HHHHHHHHCS-CHHHHHHHHH
T ss_pred HHcCCCCCc-HHHHHHHhCC-CHHHHHHHHH
Confidence 432333322 3666677744 4666666554
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=3.6e-10 Score=101.25 Aligned_cols=99 Identities=11% Similarity=0.205 Sum_probs=67.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhh
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGV 300 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~l 300 (480)
...++|+||+|+|||+|++++++.+ |..+++++...+.... -..++.+|+|||++.+.... ...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~lLilDE~~~~~~~~-----~~~l 103 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD-------AAFEAEYLAVDQVEKLGNEE-----QALL 103 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG-------GGGGCSEEEEESTTCCCSHH-----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH-------HHhCCCEEEEeCccccChHH-----HHHH
Confidence 4579999999999999999999977 7778889887766541 13468999999999864322 2334
Q ss_pred hhhcccccccccCCceEEEEecC-CCccCc--ccccCCCcee
Q 011664 301 LNFMDGVLNSCCFEERVMVFTMN-SKDHVD--QALLRPGRID 339 (480)
Q Consensus 301 L~~ldg~~~~~~~~~~ivI~tTN-~~~~LD--~aLlrpGRfd 339 (480)
+..++.... .+..++|+||| .|..+. ++|.+ |+.
T Consensus 104 ~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~ 140 (149)
T 2kjq_A 104 FSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMA 140 (149)
T ss_dssp HHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGG
T ss_pred HHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHh
Confidence 444444333 12233556666 555443 67777 765
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.92 E-value=1.2e-08 Score=105.17 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=122.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeCCCcCChHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDLSRVADDADL 266 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~s~~~~~~~l 266 (480)
+.++|....-+.+.+.+.... .....+|++|++|||||++|++++.... .+|+.++|+.+..+.--
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 356666665566655554421 1234689999999999999999998764 68999999987643333
Q ss_pred HHHHHh-----------------hcCCcEEEEecccccccCcccccchhhhhhhccc-----cccc-ccCCceEEEEecC
Q 011664 267 KSLLLQ-----------------TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG-----VLNS-CCFEERVMVFTMN 323 (480)
Q Consensus 267 ~~l~~~-----------------~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg-----~~~~-~~~~~~ivI~tTN 323 (480)
..+|.. ....++||||||+.+.. .....|+..++. +.+. ...-...+|+|||
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~-----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL-----EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATN 280 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH-----HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEES
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH-----HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCC
Confidence 344421 12457999999998832 333556655542 1110 0012345788888
Q ss_pred CC-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHh
Q 011664 324 SK-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIAN 393 (480)
Q Consensus 324 ~~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a 393 (480)
.. ..+.+.|.- |+. ..|++|+... ++...|+..++.... ........++|+.-+..+....
T Consensus 281 ~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 281 RNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFS-------RKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp SCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHH-------HHTTCCCCEECHHHHHHHHHSC
T ss_pred CCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHH-------HHcCCCCCCCCHHHHHHHHhCC
Confidence 53 223344443 453 5566666543 555566666653211 0111122468999888888888
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 011664 394 RNSPSRALKSVITALQTD 411 (480)
Q Consensus 394 ~~~~~~al~~~i~~~~~~ 411 (480)
+...++.|+++++.....
T Consensus 352 wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 352 WYGNVRELKNVIERAVLF 369 (387)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 999999999998876554
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.92 E-value=1.8e-08 Score=103.33 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=126.0
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCc--EEEEeCCCcCChHHHH
Q 011664 190 DTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYD--VYDVDLSRVADDADLK 267 (480)
Q Consensus 190 ~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~--~~~i~~s~~~~~~~l~ 267 (480)
..++|.......+.+.+..... ....+|++|++||||+.+|+++....+.. |+.++|+.+..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 3567777777766655543321 23469999999999999999999876543 9999999886544344
Q ss_pred HHHH-----------------hhcCCcEEEEecccccccCcccccchhhhhhhcccc-cccccC-----CceEEEEecCC
Q 011664 268 SLLL-----------------QTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGV-LNSCCF-----EERVMVFTMNS 324 (480)
Q Consensus 268 ~l~~-----------------~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~-~~~~~~-----~~~ivI~tTN~ 324 (480)
.+|. +......||||||+.+. ......||..++.- .....+ -..-+|+|||.
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD-----QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC-----HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred HhcCccccccCCcccccCChHhhcCCCeEEecChhhCC-----HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 4442 12345789999999883 23345566666421 110001 12346777774
Q ss_pred C-------ccCcccccCCCcee-EEEEcCCCCH--HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhh
Q 011664 325 K-------DHVDQALLRPGRID-VHIHFPLCDF--SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANR 394 (480)
Q Consensus 325 ~-------~~LD~aLlrpGRfd-~~I~~~~p~~--~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~ 394 (480)
. ..+.+.|.. |+. ..|++|+... ++...++..++.... ........++|+.-+..++...+
T Consensus 273 ~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~~w 343 (368)
T 3dzd_A 273 NLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFA-------KEYKKNCFELSEETKEYLMKQEW 343 (368)
T ss_dssp CHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHH-------HHTTCCCCCBCHHHHHHHHTCCC
T ss_pred CHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHHHhCCC
Confidence 2 123334554 554 4677887766 566677777663211 11112235799999999988888
Q ss_pred hcHHHHHHHHHHHHHhc
Q 011664 395 NSPSRALKSVITALQTD 411 (480)
Q Consensus 395 ~~~~~al~~~i~~~~~~ 411 (480)
...++.|+++++.+...
T Consensus 344 pGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 344 KGNVRELKNLIERAVIL 360 (368)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 99999999999877654
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.92 E-value=2.2e-09 Score=100.89 Aligned_cols=119 Identities=12% Similarity=0.175 Sum_probs=77.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHc--------CC-CcEEEEeCCCcCC---------------------hHHHHHHHH-hhc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF--------MS-YDVYDVDLSRVAD---------------------DADLKSLLL-QTT 274 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~--------l~-~~~~~i~~s~~~~---------------------~~~l~~l~~-~~~ 274 (480)
-+|++|+||||||++|.+++.. .| .+++..++..+.. ...+...+. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5899999999999999886433 34 6666666543321 122332210 123
Q ss_pred CCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHH
Q 011664 275 SKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFS 350 (480)
Q Consensus 275 ~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~ 350 (480)
.++||+|||++.+.+.+........++..+..-. ..+.-||++|+.++.|+.+++. |++.+++++.|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcC----cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 4899999999998754422211223444443211 3455678888889999999998 99999999986543
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.91 E-value=1.3e-09 Score=102.67 Aligned_cols=115 Identities=23% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSG 299 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~ 299 (480)
+.|.++++|+|||||||||++|.++|+.+...++...-+. .. ..+.......||+|||+|.-+ .......
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~~----~~~~d~~ 123 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTTC----WTYFDTY 123 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHHH----HHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCchh----HHHHHHH
Confidence 4566778999999999999999999999876544321111 00 011222345699999998431 1111123
Q ss_pred hhhhcccccc---cccC-----CceEEEEecCCC---ccCcccccCCCceeEEEEcCCC
Q 011664 300 VLNFMDGVLN---SCCF-----EERVMVFTMNSK---DHVDQALLRPGRIDVHIHFPLC 347 (480)
Q Consensus 300 lL~~ldg~~~---~~~~-----~~~ivI~tTN~~---~~LD~aLlrpGRfd~~I~~~~p 347 (480)
+-+.+||... .... ...-+|+|||.. +.--+.|.+ |+- .+.|+.|
T Consensus 124 lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 124 MRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp CHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred HHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 5566666420 0001 134578899963 222346777 884 7777744
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.88 E-value=6.4e-10 Score=111.62 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=67.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC--CC----cC-C-hHHHHHHHHhhcCCcEEEEecccccccCc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL--SR----VA-D-DADLKSLLLQTTSKSVILIEDLDRFLVEK 291 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~--s~----~~-~-~~~l~~l~~~~~~~sII~IDEiD~l~~~~ 291 (480)
|.+..+.++|+||||||||+||.++|.+.|..+.++++ .+ +. + +..+..+........+||||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 44555668999999999999999999875555444443 21 11 1 12222232222222299999999986543
Q ss_pred cc-------ccchhhhhhhcccccccccCCceEEEEecCCCccCcccc
Q 011664 292 PA-------AVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQAL 332 (480)
Q Consensus 292 ~~-------~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aL 332 (480)
.. ...+.+++..|+++.. ..+..+|++|| +...|+++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k---~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAA---SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHH---HHTCEEEEECC-CSSCSSSH
T ss_pred ccccccchHHHHHHHHHHHHHHHHh---hCCCEEEEEeC-CcccchhH
Confidence 33 3446778888877655 34567788888 66677765
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=2.6e-07 Score=91.98 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=109.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcC---
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVA--- 261 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~--- 261 (480)
++..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 445567789998888887765532 2 4799999999999999999999876 6666653221
Q ss_pred ---Ch------------------------------------HHHHHH---HHh---hcCCcEEEEecccccccCcccccc
Q 011664 262 ---DD------------------------------------ADLKSL---LLQ---TTSKSVILIEDLDRFLVEKPAAVS 296 (480)
Q Consensus 262 ---~~------------------------------------~~l~~l---~~~---~~~~sII~IDEiD~l~~~~~~~~~ 296 (480)
.. ..+..+ +.. ...|.+|+|||++.+..... ..
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~~ 147 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--RG 147 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--TT
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--cc
Confidence 00 011222 211 12489999999998753100 00
Q ss_pred hhhhhhhcccccccccCCceEEEEecCCC---c------cCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 011664 297 LSGVLNFMDGVLNSCCFEERVMVFTMNSK---D------HVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKL 367 (480)
Q Consensus 297 ls~lL~~ldg~~~~~~~~~~ivI~tTN~~---~------~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l 367 (480)
..+++..+..+... ..+..+|+|+... . .....+. ||....+++++.+.++..+++...++..+...
T Consensus 148 ~~~~~~~L~~~~~~--~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 148 GKELLALFAYAYDS--LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp THHHHHHHHHHHHH--CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred hhhHHHHHHHHHHh--cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11223333222221 1234455554432 1 1122233 47767999999999999999988765444444
Q ss_pred ch-hHHHHHHhCCCCCHHHHHHHHH
Q 011664 368 FP-QVEEIFQNGSSLSPAEIGELMI 391 (480)
Q Consensus 368 ~~-~i~~l~~~~~g~s~adI~~ll~ 391 (480)
.+ .+..+...+.| .|.-+..++.
T Consensus 224 ~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 224 PENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 43 45667777745 4655665553
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.80 E-value=2.9e-08 Score=123.53 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=95.7
Q ss_pred CceEEEEccCCCcHHHHHHHH-HHcCCCcEEEEeCCCcCChHHHHHHHHh-----h-------------cCCcEEEEecc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAM-ASFMSYDVYDVDLSRVADDADLKSLLLQ-----T-------------TSKSVILIEDL 284 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~ai-A~~l~~~~~~i~~s~~~~~~~l~~l~~~-----~-------------~~~sII~IDEi 284 (480)
.+++||+||||||||++++.. ++..+.+++.++++.-.+...+...+.. . ....|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 457999999999999887654 4445778899999988887777766642 1 11259999999
Q ss_pred cccccCcccccchhhhhhhc-c--ccccc-----ccCCceEEEEecCCC-----ccCcccccCCCceeEEEEcCCCCHHH
Q 011664 285 DRFLVEKPAAVSLSGVLNFM-D--GVLNS-----CCFEERVMVFTMNSK-----DHVDQALLRPGRIDVHIHFPLCDFSS 351 (480)
Q Consensus 285 D~l~~~~~~~~~ls~lL~~l-d--g~~~~-----~~~~~~ivI~tTN~~-----~~LD~aLlrpGRfd~~I~~~~p~~~~ 351 (480)
+.-..+..+.+..-++|.++ | |+... ..-.+..+|+|+|.| ..|+++++| ||- .+.+++|+.++
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~i~~ps~es 1460 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILLVDFPSTSS 1460 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEECCCCCHHH
T ss_pred CCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEEeCCCCHHH
Confidence 97655544444444555443 3 22221 011345678899987 458999999 996 69999999999
Q ss_pred HHHHHHHHhc
Q 011664 352 FKTLASSYLG 361 (480)
Q Consensus 352 r~~il~~~l~ 361 (480)
...|+..++.
T Consensus 1461 L~~If~til~ 1470 (3245)
T 3vkg_A 1461 LTQIYGTFNR 1470 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.67 E-value=1.2e-07 Score=92.70 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhhcCCcEEEEecccccccCcccccchhhhh
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVL 301 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL 301 (480)
+++++++||||||||||++|.|+|+.++.. -.++.+. . ...+.....+.|++.||....-. ....+-
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~---~---~f~l~~~~~k~i~l~Ee~~~~~d------~~~~lr 168 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN---E---NFPFNDCVDKMVIWWEEGKMTAK------VVESAK 168 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC---S---SCTTGGGSSCSEEEECSCCEETT------THHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc---c---ccccccccccEEEEeccccchhH------HHHHHH
Confidence 456789999999999999999999976552 2223321 1 11234445667777777765421 111222
Q ss_pred hhccccccc---c-----cCCceEEEEecCC-C----------ccCcccccCCCceeEEEEcC--------CCCHHHHHH
Q 011664 302 NFMDGVLNS---C-----CFEERVMVFTMNS-K----------DHVDQALLRPGRIDVHIHFP--------LCDFSSFKT 354 (480)
Q Consensus 302 ~~ldg~~~~---~-----~~~~~ivI~tTN~-~----------~~LD~aLlrpGRfd~~I~~~--------~p~~~~r~~ 354 (480)
+.++|-.-. . .-....+|+|||. + +...++|.+ |+ ..+.|+ ..+.++-+.
T Consensus 169 ~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p~~~~~lt~~~~~~ 245 (267)
T 1u0j_A 169 AILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLDHDFGKVTKQEVKD 245 (267)
T ss_dssp HHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCCTTSCCCCHHHHHH
T ss_pred HHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCCcccCCCCHHHHHH
Confidence 233321110 0 0123357788885 2 245678888 88 578887 455555555
Q ss_pred HHH
Q 011664 355 LAS 357 (480)
Q Consensus 355 il~ 357 (480)
.++
T Consensus 246 f~~ 248 (267)
T 1u0j_A 246 FFR 248 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.64 E-value=7.8e-08 Score=118.92 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=92.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhh-cCCcEEEEecccccccCcccccchhhhhh
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLN 302 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~ 302 (480)
..|.++.||||||||++++++|+.+|.+++.++|++-.+...+..+|..+ ..++.+++||++.+-. ..++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~-----evLs~l~~ 719 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE-----KVLSAVSA 719 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-----HHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-----HHHHHHHH
Confidence 45799999999999999999999999999999999988888888888544 4579999999997632 22333211
Q ss_pred hcc----ccccc-----------ccCCceEEEEecC----CCccCcccccCCCceeEEEEcCCCCHHHHHHHH
Q 011664 303 FMD----GVLNS-----------CCFEERVMVFTMN----SKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356 (480)
Q Consensus 303 ~ld----g~~~~-----------~~~~~~ivI~tTN----~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il 356 (480)
+++ .+... .......|++|.| ....|+++|.+ || +.|.+..||.+...+|.
T Consensus 720 ~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 720 NIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp HHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHH
Confidence 111 11000 0112334666777 34578999998 99 68999999998877764
No 101
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.61 E-value=1.9e-08 Score=80.94 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhcHHHHHHHHHHHHHhcCCCCcccccccccccC
Q 011664 348 DFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNSPSRALKSVITALQTDGEGRGAANAGRRLDKS 427 (480)
Q Consensus 348 ~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~~~~al~~~i~~~~~~~~~~~~~~~~~~~~~~ 427 (480)
|.++|.+|++.+++..+.....+++.|++.|.|||||||.++|+.+...+.+. .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~----------~---------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE----------N---------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS----------C----------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------c----------------
Confidence 67899999999998776655567899999999999999999998765432210 0
Q ss_pred CCCCCCCCCCCCCCCccccCCcHHHHHHhhcccccCcccCCcCcccccc
Q 011664 428 GSKKSTDADSGEHGGVFSRENTVKEFRKLYGLLTLKNSRKSQSFDLAAA 476 (480)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~v~~~df~~~~g~~~~~~~~ps~~~~~~~~ 476 (480)
.++|+++||.++ +++++||++.++..|
T Consensus 56 -----------------~~~i~~~df~~A-----l~~~~ps~~~~l~~y 82 (83)
T 3aji_B 56 -----------------RYIVLAKDFEKA-----YKTVIKKDEQEHEFY 82 (83)
T ss_dssp -----------------CSSBCHHHHHHH-----HHHHCC---------
T ss_pred -----------------cCCcCHHHHHHH-----HHHHccCchHHHHhc
Confidence 156899999999 899999999555444
No 102
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.56 E-value=4.5e-08 Score=79.53 Aligned_cols=53 Identities=9% Similarity=-0.108 Sum_probs=45.2
Q ss_pred EcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 343 HFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 343 ~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
+-.+||.++|.+|++.+++........+++.|++.|.|||||||.++|+.+..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~ 59 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 59 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34689999999999999987665555678999999999999999999987644
No 103
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.50 E-value=1.3e-07 Score=75.11 Aligned_cols=52 Identities=10% Similarity=-0.117 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhhc
Q 011664 345 PLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRNS 396 (480)
Q Consensus 345 ~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~~ 396 (480)
|+|+.++|.+|++.++......-..+++.|+..+.|||||||.++|..+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~ 52 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 52 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999876655556889999999999999999999876543
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.38 E-value=2e-07 Score=112.19 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=69.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC----------------------hHHHHHH--HHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD----------------------DADLKSL--LLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~----------------------~~~l~~l--~~~ 272 (480)
|++..++++||||||||||+||.++|.+. |..+..+++....+ +..++.+ +.+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37788899999999999999999998754 56777777664321 1112222 234
Q ss_pred hcCCcEEEEecccccccCcc------------cccchhhhhhhcccccccccCCceEEEEecCCC
Q 011664 273 TTSKSVILIEDLDRFLVEKP------------AAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK 325 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~~~~------------~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~ 325 (480)
..+|++||||+++.+.+... ..+.++++|..|++... ..+ ++|++||..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~---~~~-v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK---QSN-TLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH---TTT-CEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH---hCC-cEEEEEccc
Confidence 47899999999998876321 12335788888888765 344 455556643
No 105
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.36 E-value=3.9e-07 Score=95.62 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=80.0
Q ss_pred cccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHH-HHcCCCcEEEEeCCCcCChHHHHHH-
Q 011664 192 ISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAM-ASFMSYDVYDVDLSRVADDADLKSL- 269 (480)
Q Consensus 192 i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~ai-A~~l~~~~~~i~~s~~~~~~~l~~l- 269 (480)
|.|++++|..|.-.+..- .++ ....-++||.|+||| ||++++++ ++.+....+..... .....+...
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 789999887776332110 000 011226999999999 99999999 77665544432211 011111000
Q ss_pred -----H------HhhcCCcEEEEecccccccCcccccchhhhhhhcc-------cccccccCCceEEEEecCCCc-----
Q 011664 270 -----L------LQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMD-------GVLNSCCFEERVMVFTMNSKD----- 326 (480)
Q Consensus 270 -----~------~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ld-------g~~~~~~~~~~ivI~tTN~~~----- 326 (480)
+ .......|+|+|||+.+- ..+++.|+..|+ |. . -+....||+|+|..+
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~-----~~~qsaLlEaMEe~~VtI~G~-~--lparf~VIAA~NP~~~yd~~ 355 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP-----EPHRWALMEAMDKGTVTVDGI-A--LNARCAVLAAINPGEQWPSD 355 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC-----HHHHHHHHHHHHHSEEEETTE-E--EECCCEEEEEECCCC--CCS
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC-----HHHHHHHHHHHhCCcEEECCE-E--cCCCeEEEEEeCcccccCCC
Confidence 0 011246899999999873 344566666664 22 1 123456888999764
Q ss_pred ------cCcccccCCCceeE-EEEcCCCCHHH
Q 011664 327 ------HVDQALLRPGRIDV-HIHFPLCDFSS 351 (480)
Q Consensus 327 ------~LD~aLlrpGRfd~-~I~~~~p~~~~ 351 (480)
.|.++++. |||. .+.+++|+.+.
T Consensus 356 ~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 356 PPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 78899999 9985 44567777655
No 106
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.33 E-value=4.1e-07 Score=74.04 Aligned_cols=48 Identities=10% Similarity=-0.103 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 348 DFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 348 ~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
|.++|.+|++.+++..+..-..+++.|++.|.|||||||.++|..+..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~ 49 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 49 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 567899999999987776656689999999999999999999987644
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.25 E-value=3e-06 Score=105.80 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCcCChHHHHHHHHhh-cCCcEEEEecccccccCcccccchhhhhhh
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRVADDADLKSLLLQT-TSKSVILIEDLDRFLVEKPAAVSLSGVLNF 303 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~~~~~~l~~l~~~~-~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ 303 (480)
.|..+.||+|||||.+++.+|+.+|..++.++|++-.+...+.++|... ...+..++||++.+- ...++.+..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-----~~vLSvv~~q 679 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-----ERILSAVSQQ 679 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC-----HHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC-----HHHHHHHHHH
Confidence 4678999999999999999999999999999999988887777777544 467889999999873 2223332222
Q ss_pred cc-----------------cccccccCCceEEEEecCC----CccCcccccCCCceeEEEEcCCCCHHHHHHHH
Q 011664 304 MD-----------------GVLNSCCFEERVMVFTMNS----KDHVDQALLRPGRIDVHIHFPLCDFSSFKTLA 356 (480)
Q Consensus 304 ld-----------------g~~~~~~~~~~ivI~tTN~----~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il 356 (480)
+. |-.- .-..+.-|++|.|. ...|+++|.. || +.|.++.||.+...+|+
T Consensus 680 i~~I~~a~~~~~~~~~~~~G~~i-~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 680 IQTIQVALKENSKEVELLGGKNI-SLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHTCSEECCC---CE-ECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEecCCCEE-eecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHH
Confidence 21 2100 01223456778773 4678999999 98 57999999998877765
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.21 E-value=1.2e-05 Score=80.79 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=88.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC---CC-cEEEEeCCCcCChHHHHHHHHhh------cCCcEEEEecccc-cccCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM---SY-DVYDVDLSRVADDADLKSLLLQT------TSKSVILIEDLDR-FLVEK 291 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l---~~-~~~~i~~s~~~~~~~l~~l~~~~------~~~sII~IDEiD~-l~~~~ 291 (480)
....||||||+|+||++.++++++.+ +. ++..+.... +.+++.++... ....|++|||++. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 45589999999999999999998865 32 222333322 23455554332 3578999999997 52
Q ss_pred ccccchhhhhhhcccccccccCCceEEEEecCCC------ccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCC
Q 011664 292 PAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSK------DHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDH 365 (480)
Q Consensus 292 ~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~------~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~ 365 (480)
....+.|+..++.. +++.++|++|+.+ ..+-+++.+ |. .++++..++.++....++..+...+.
T Consensus 91 --~~~~~aLl~~le~p-----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 91 --AAINEQLLTLTGLL-----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp --TTHHHHHHHHHTTC-----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred --hHHHHHHHHHHhcC-----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 22345567666532 3355666655543 346678887 66 48899999999888888888876665
Q ss_pred CCchhH
Q 011664 366 KLFPQV 371 (480)
Q Consensus 366 ~l~~~i 371 (480)
.+.++.
T Consensus 161 ~i~~~a 166 (343)
T 1jr3_D 161 ELDDAA 166 (343)
T ss_dssp EECHHH
T ss_pred CCCHHH
Confidence 555443
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.04 E-value=9.2e-06 Score=74.53 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
.+.|.||+|+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 378999999999999999999875443
No 110
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.03 E-value=0.00011 Score=79.07 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=95.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------CCcEEEEeCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-------SYDVYDVDLS 258 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~~i~~s 258 (480)
|.....++|-+...+.|.+.+... ....+-++++||+|+|||+||+.+++.. ...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 445567899988888887655310 1124578999999999999999997532 1234555443
Q ss_pred CcCCh---------------------------HH----HHHHHHhhcCCcEEEEecccccccCcccccchhhhhhhcccc
Q 011664 259 RVADD---------------------------AD----LKSLLLQTTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGV 307 (480)
Q Consensus 259 ~~~~~---------------------------~~----l~~l~~~~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~ 307 (480)
..... .. ++..+.....|.+|+|||++.. ..+..+
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------~~l~~l--- 254 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------WVLKAF--- 254 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------HHHHTT---
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------HHHHHh---
Confidence 22100 11 1222222236899999999842 112221
Q ss_pred cccccCCceEEEEecCCCccCcccccCCCceeEEEEc-CCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHH
Q 011664 308 LNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHF-PLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEI 386 (480)
Q Consensus 308 ~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~-~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI 386 (480)
..+..||+||..+..... . . |.. ..+.. ...+.++-.+++..+++.......+.+..+++.+.| -|.-|
T Consensus 255 -----~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal 324 (591)
T 1z6t_A 255 -----DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG-SPLVV 324 (591)
T ss_dssp -----CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT-CHHHH
T ss_pred -----cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC-CcHHH
Confidence 123346667765432211 1 1 222 22322 467788888888888764222233456777777744 45555
Q ss_pred HHHH
Q 011664 387 GELM 390 (480)
Q Consensus 387 ~~ll 390 (480)
..+.
T Consensus 325 ~~~a 328 (591)
T 1z6t_A 325 SLIG 328 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.87 E-value=3.5e-05 Score=71.57 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~ 259 (480)
|++...-++|+||||+|||+++..+|...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667899999999999999999985567788787654
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.83 E-value=0.001 Score=76.90 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=100.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC-------CCcEEEEeC
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM-------SYDVYDVDL 257 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l-------~~~~~~i~~ 257 (480)
.|.....++|-++..++|.+.+... ....+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4455667899999888888765321 1134568899999999999999998752 233556766
Q ss_pred CCcCCh---------------------------HHHHHHHHh----hcCCcEEEEecccccccCcccccchhhhhhhccc
Q 011664 258 SRVADD---------------------------ADLKSLLLQ----TTSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDG 306 (480)
Q Consensus 258 s~~~~~---------------------------~~l~~l~~~----~~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg 306 (480)
+..... ..+...+.. ...+.+|+|||++.. . .++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~----~~~~ 253 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W----VLKA 253 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H----HHTT
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H----HHHh
Confidence 552110 111111211 134789999999853 1 1222
Q ss_pred ccccccCCceEEEEecCCCccCcccccCCCceeEEEEcCC-CCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHH
Q 011664 307 VLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPL-CDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAE 385 (480)
Q Consensus 307 ~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~-p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~ad 385 (480)
+. .+.-||+||..+..... +. .....+.++. .+.++-.+++..+.......+.+...++++...|+ |--
T Consensus 254 ~~-----~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 254 FD-----NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp TC-----SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred hc-----CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 21 22346677765433211 11 2234677775 78888888888877554444445567787777444 544
Q ss_pred HHH
Q 011664 386 IGE 388 (480)
Q Consensus 386 I~~ 388 (480)
|..
T Consensus 324 l~~ 326 (1249)
T 3sfz_A 324 VSL 326 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 113
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.80 E-value=2.5e-06 Score=68.31 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHHhhh
Q 011664 350 SSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIANRN 395 (480)
Q Consensus 350 ~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~a~~ 395 (480)
++|.+|++.+++..+.....+++.|+..+.|||||||.++|..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~ 46 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 46 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4688999999876554445577899999999999999999986644
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=4.5e-05 Score=71.89 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc--C-------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF--M-------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~--l-------~~~~~~i~~s~ 259 (480)
|++...-++|+||||+|||+|+..+|.. + +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4556667899999999999999999984 3 45677777654
No 115
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=4.1e-05 Score=77.72 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=48.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC---------------------hHHHHHH---HHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD---------------------DADLKSL---LLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~---------------------~~~l~~l---~~~ 272 (480)
|++..+-++++||||+|||+|+..+|..+ +..+.+++...-.. ..++..+ +.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55566679999999999999999998653 56777777553211 1111122 122
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 34689999999999874
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.74 E-value=6.8e-05 Score=69.87 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=27.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
|++....++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44555678999999999999999999643 44555554
No 117
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=4.9e-05 Score=91.85 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=53.5
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCCcCChH------------------------HHHHHHHh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSRVADDA------------------------DLKSLLLQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~~~~~~------------------------~l~~l~~~ 272 (480)
|++..+.++|+||||||||+|+.+++.+ .|.+..++++.+...+- .+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 4677788999999999999999999864 37888888877643311 12233455
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...|++|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67899999999999855
No 118
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=0.00012 Score=74.50 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC---------------------hHHHHHHH---Hh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD---------------------DADLKSLL---LQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~---------------------~~~l~~l~---~~ 272 (480)
|++...-++|+||||+|||+|+..+|..+ +..+++++...... ..++...+ .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556678999999999999999998764 66777787654221 11111111 22
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 35789999999988775
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.67 E-value=3.2e-05 Score=77.50 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-++++||||+|||+++..+|... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666678999999999999999999764 56788888765
No 120
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.66 E-value=0.00013 Score=74.64 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=49.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC---------------------hHHHHHHHH---h
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD---------------------DADLKSLLL---Q 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~---------------------~~~l~~l~~---~ 272 (480)
|++...-++++||||+|||+|+..+|..+ +.++.++++..-.. ...+...+. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666779999999999999999888653 66788887654211 112222222 2
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+||||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 35689999999999874
No 121
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.65 E-value=1.7e-05 Score=73.15 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=55.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCC--C------cCC----------hHHHHHHHHhhc-CCcEEEEec
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLS--R------VAD----------DADLKSLLLQTT-SKSVILIED 283 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s--~------~~~----------~~~l~~l~~~~~-~~sII~IDE 283 (480)
-++++||||+|||+++..++.. .+..++.+... . +.+ -.....++.... .+.+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 5789999999999998666643 35555443211 0 000 001112222222 467999999
Q ss_pred ccccccCcccccchhhhhhhcccccccccCCceEEEE--ecC---CCccCcccccCCCceeEEEEcCC
Q 011664 284 LDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVF--TMN---SKDHVDQALLRPGRIDVHIHFPL 346 (480)
Q Consensus 284 iD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~--tTN---~~~~LD~aLlrpGRfd~~I~~~~ 346 (480)
+..+.+ +++..+..+.. .+..+++. ++| .+....++|+. +.|...++..
T Consensus 85 ~Q~~~~---------~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~--~ad~v~~l~~ 138 (184)
T 2orw_A 85 VQFFNP---------SLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLS--LADTVIKKKA 138 (184)
T ss_dssp GGGSCT---------THHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHH--HCSEEEECCB
T ss_pred cccCCH---------HHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHH--HhhheEEeee
Confidence 997521 12222222222 12233433 344 44455667776 7776666543
No 122
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.65 E-value=6.2e-05 Score=76.65 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=50.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC---------------------hHHHHHHH---Hh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD---------------------DADLKSLL---LQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~---------------------~~~l~~l~---~~ 272 (480)
|++..+-++++||||+|||+||..+|..+ +..+.++++..-.. ...+..++ .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56667789999999999999999988653 66788888743221 12222222 23
Q ss_pred hcCCcEEEEeccccccc
Q 011664 273 TTSKSVILIEDLDRFLV 289 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~ 289 (480)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45789999999998874
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.63 E-value=9.2e-05 Score=70.01 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=22.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHH
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA 245 (480)
|++...-+.|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44455678999999999999999998
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.61 E-value=4.7e-05 Score=68.50 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
.-|+|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468999999999999999999999988887765
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.60 E-value=2.7e-05 Score=70.64 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=29.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
++.++|.||||||||++++.+|..++..+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999988764
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.58 E-value=0.00011 Score=74.38 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---------CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---------MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---------l~~~~~~i~~s~ 259 (480)
|++...-++++||||+|||+|+..+|.. .+..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5555566899999999999999999885 256788888655
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=4e-05 Score=70.83 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
....++|.|||||||||+++++|..++..++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999887654
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.52 E-value=9.5e-05 Score=74.97 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-+.|+||||+|||+|++.+|... +-.+++++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56666678999999999999999999876 23557776543
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.51 E-value=4.5e-05 Score=69.36 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
..+.-|+|.|+||+||||+++.++..++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3455789999999999999999999999877663
No 130
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.50 E-value=0.0016 Score=69.63 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=91.1
Q ss_pred ccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHH----cCCCc---EEEEeCCCcC--C-
Q 011664 193 SMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMAS----FMSYD---VYDVDLSRVA--D- 262 (480)
Q Consensus 193 ~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~----~l~~~---~~~i~~s~~~--~- 262 (480)
+|-++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++ ..... .+.++++... +
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 48888888888776321 112245788999999999999999997 33222 3444554421 0
Q ss_pred ---------------------------hHHHHHHHHhh--cC-CcEEEEecccccccCcccccchhhhhhhccccccccc
Q 011664 263 ---------------------------DADLKSLLLQT--TS-KSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCC 312 (480)
Q Consensus 263 ---------------------------~~~l~~l~~~~--~~-~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~ 312 (480)
...+...+.+. .. +.+|+|||++.. .++ .+.+.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~~~--~~~~~----- 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------ETI--RWAQE----- 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------HHH--HHHHH-----
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------hhh--ccccc-----
Confidence 01122222221 23 789999999853 111 11111
Q ss_pred CCceEEEEecCCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCC-C-CchhHHHHHHhCCCCCHHHHHH
Q 011664 313 FEERVMVFTMNSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDH-K-LFPQVEEIFQNGSSLSPAEIGE 388 (480)
Q Consensus 313 ~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~-~-l~~~i~~l~~~~~g~s~adI~~ 388 (480)
.+..||+||....... . . +-.+..+.++..+.++-.+++..+...... . +.+...++++.. |..|--|..
T Consensus 264 -~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c-~GlPLAl~~ 335 (549)
T 2a5y_B 264 -LRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS-SGNPATLMM 335 (549)
T ss_dssp -TTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred -CCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-CCChHHHHH
Confidence 2334667776433211 1 1 123457899999999999999988533221 1 111234566655 444544443
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.43 E-value=6.8e-05 Score=66.68 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-|+|.|||||||||+++.+|..+++.++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998887665
No 132
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.42 E-value=0.00026 Score=68.93 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
|++...-++|+||||+|||+|+..+|..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445567899999999999999999864
No 133
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.38 E-value=6.6e-05 Score=67.69 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=27.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.++|.||||||||++++++|..++.++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999998877643
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.37 E-value=7.5e-05 Score=67.53 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
++.++|.||||+|||++++++|..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34699999999999999999999999887765
No 135
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00014 Score=72.34 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------------C----CcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------------S----YDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------------~----~~~~~i~~s~ 259 (480)
|++...-++++||||+|||+++..+|... | ..+++++...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 55666678999999999999999998642 3 5778888765
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00024 Score=69.97 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
+++.+.+.+.+...+... .....+.-++|.||||+||||++++++..++...+.++.
T Consensus 10 ~~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344444444444444321 122345678999999999999999999988555566664
No 137
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.34 E-value=0.0001 Score=67.32 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=28.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc-CCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF-MSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~-l~~~~~~i~ 256 (480)
+..++|.|+||||||++++.+|.. +|+++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346999999999999999999999 787777653
No 138
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.34 E-value=8.2e-05 Score=67.44 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=28.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-|+|.|+||||||++++.+|..+|.++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999887654
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.34 E-value=0.00034 Score=66.66 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=42.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc---------C-----------------ChHHHHHHHHhhcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV---------A-----------------DDADLKSLLLQTTS 275 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~---------~-----------------~~~~l~~l~~~~~~ 275 (480)
-.+++.|+||+|||+++-.+|..+ |.++..+++..- . .+..+...+. ..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~--~~ 84 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK--AA 84 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH--HC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh--cC
Confidence 468999999999999999998765 777766655320 0 0122333333 36
Q ss_pred CcEEEEeccccc
Q 011664 276 KSVILIEDLDRF 287 (480)
Q Consensus 276 ~sII~IDEiD~l 287 (480)
|.+++|||+-..
T Consensus 85 pdlvIVDElG~~ 96 (228)
T 2r8r_A 85 PSLVLVDELAHT 96 (228)
T ss_dssp CSEEEESCTTCB
T ss_pred CCEEEEeCCCCC
Confidence 899999998764
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.34 E-value=0.00014 Score=65.03 Aligned_cols=31 Identities=35% Similarity=0.695 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
..+.|.|||||||||+++.+|..++..++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4589999999999999999999999866653
No 141
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.31 E-value=0.0001 Score=65.90 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
..++|.|+||||||++++.+|..+|.++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999988754
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.28 E-value=0.00041 Score=71.68 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---------CCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---------SYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---------~~~~~~i~~s~ 259 (480)
|++...-++|+||||||||+|+..+|-.. +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56666678999999999999999776322 34577777654
No 143
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00012 Score=64.84 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-|+|.|||||||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8899887764
No 144
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.27 E-value=0.00013 Score=70.53 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
-++|.||||||||++++++|..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887764
No 145
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.0006 Score=68.22 Aligned_cols=69 Identities=23% Similarity=0.189 Sum_probs=45.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC-----CCcEEEEeCCCcCC---------------------hHHH-HHHHH-
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM-----SYDVYDVDLSRVAD---------------------DADL-KSLLL- 271 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l-----~~~~~~i~~s~~~~---------------------~~~l-~~l~~- 271 (480)
|++.. -++++||||||||+|+..++..+ +..+.+++...-.. ..++ ..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34443 57899999999999987766533 66788887643211 1112 11211
Q ss_pred ----hhcCCcEEEEeccccccc
Q 011664 272 ----QTTSKSVILIEDLDRFLV 289 (480)
Q Consensus 272 ----~~~~~sII~IDEiD~l~~ 289 (480)
+...|.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 234789999999999874
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.24 E-value=0.00019 Score=65.20 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
...-+.|.||||+||||+++.+|+..+...+.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 44568899999999999999999987776666654
No 147
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00012 Score=65.39 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=27.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-|+|.|+||||||++++.+|..++.++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999998877643
No 148
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00049 Score=64.78 Aligned_cols=39 Identities=33% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc----CCCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF----MSYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~----l~~~~~~i~~s 258 (480)
|++...-++++|+||+|||+++..+|.. .+.+++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4556667899999999999999877643 35667776643
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00016 Score=66.62 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.-|+|.|||||||||+++.+|..++..++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34589999999999999999999999887765
No 150
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00014 Score=65.84 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-|+|.|+|||||||+++.+|..++..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4689999999999999999999999876654
No 151
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00017 Score=65.29 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=28.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.+.-|+|.|+|||||||+++.+|..++..+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345689999999999999999999999877765
No 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.19 E-value=0.00018 Score=64.43 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHH-cCCCcEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS-FMSYDVY 253 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~-~l~~~~~ 253 (480)
+.-|+|.||||+||||+++.++. .++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 34689999999999999999998 5664443
No 153
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.19 E-value=0.00027 Score=67.98 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
.+..++|.||||+||||+++.++..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45678999999999999999999999866666665443
No 154
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00017 Score=65.60 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-|+|.|||||||||+++.+|..++..+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 46899999999999999999999998877654
No 155
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.18 E-value=0.00029 Score=84.25 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=52.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCCcCC---------------------hHHHHHHH---Hh
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSRVAD---------------------DADLKSLL---LQ 272 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~~~~---------------------~~~l~~l~---~~ 272 (480)
|++..+.++|+||||||||+||.+++.. .|..+++++...... ...+..++ .+
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 6777889999999999999999998864 477888888765432 12223333 23
Q ss_pred hcCCcEEEEecccccccC
Q 011664 273 TTSKSVILIEDLDRFLVE 290 (480)
Q Consensus 273 ~~~~sII~IDEiD~l~~~ 290 (480)
...+.+|+||++..+...
T Consensus 110 ~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp HTCCSEEEESCSTTCCCH
T ss_pred ccCCCEEEEcchhhhccc
Confidence 357899999999988753
No 156
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.0002 Score=67.42 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=28.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.-|+|.|||||||||+++.+|..++..+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35689999999999999999999999877654
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.15 E-value=0.0013 Score=66.79 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=39.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCC-CcC---------------ChHHHHHHHHhh--cCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLS-RVA---------------DDADLKSLLLQT--TSKSVILIE 282 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s-~~~---------------~~~~l~~l~~~~--~~~sII~ID 282 (480)
.-+++.||+|+||||+++++++.+ +..++.+.-. ++. ....+...++.+ ..|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 357899999999999999999865 3444443210 000 011233344433 589999999
Q ss_pred ccc
Q 011664 283 DLD 285 (480)
Q Consensus 283 EiD 285 (480)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 995
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.0002 Score=66.08 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=28.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+.-|+|.||||+||||+++.++..+|..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346999999999999999999999987766543
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.14 E-value=0.00014 Score=65.80 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=26.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-++|.|||||||||+++.+|..++..++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 588999999999999999999998776654
No 160
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.14 E-value=0.00019 Score=65.48 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=27.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.-|.|.|||||||||+++.+|..++..+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34689999999999999999999999776654
No 161
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.14 E-value=0.0011 Score=69.28 Aligned_cols=146 Identities=14% Similarity=0.263 Sum_probs=93.4
Q ss_pred cCChHHH-HHHHHhhcCCcEEEEecccccccCcc---ccc----chhhhhhhccccccc-----ccCCceEEEEec----
Q 011664 260 VADDADL-KSLLLQTTSKSVILIEDLDRFLVEKP---AAV----SLSGVLNFMDGVLNS-----CCFEERVMVFTM---- 322 (480)
Q Consensus 260 ~~~~~~l-~~l~~~~~~~sII~IDEiD~l~~~~~---~~~----~ls~lL~~ldg~~~~-----~~~~~~ivI~tT---- 322 (480)
+.+...+ +..+.++....|+++||||.++...+ ... ....||..|||-... ...+++++|+|.
T Consensus 234 l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 234 LINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp SCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred ccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 3343443 34445555667999999999986422 111 234789999885321 124567888875
Q ss_pred CCCccCcccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHh-C--CCCCHHHHHHHHHHh------
Q 011664 323 NSKDHVDQALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQN-G--SSLSPAEIGELMIAN------ 393 (480)
Q Consensus 323 N~~~~LD~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~-~--~g~s~adI~~ll~~a------ 393 (480)
+.|.++-|.|+. ||+.+|.++.++.+++..|+..- ...+..+...+... . -.||+..+..+...+
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~----~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~ 387 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEP----HASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 387 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSS----TTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHH----HHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccC
Confidence 345556688888 99999999999999999998410 11122333333221 1 147888888777653
Q ss_pred -hhcHHHHHHHHHHHHHhc
Q 011664 394 -RNSPSRALKSVITALQTD 411 (480)
Q Consensus 394 -~~~~~~al~~~i~~~~~~ 411 (480)
+....|.|+.+++.+-.+
T Consensus 388 t~~~GaR~L~~~ie~~~~~ 406 (444)
T 1g41_A 388 TENIGARRLHTVMERLMDK 406 (444)
T ss_dssp SCCCGGGHHHHHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHHH
Confidence 356778888888877655
No 162
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.0002 Score=66.65 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=26.6
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|+|.|||||||||+++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999887766
No 163
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.13 E-value=0.00019 Score=67.22 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-|+|.|||||||||+++.+|..++..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3589999999999999999999999877765
No 164
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.13 E-value=0.00018 Score=63.88 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.|+|.|+||||||++++.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999998887643
No 165
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00015 Score=65.59 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-|+|.|||||||||+++.+|..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00023 Score=66.55 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-|+|.|||||||||+++.+|..++..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999877664
No 167
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00022 Score=66.31 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|+|.|||||||||+++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999877765
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.00031 Score=64.55 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-|+|.|||||||||+++.+|..+|..+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46889999999999999999999998776654
No 169
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.06 E-value=0.0013 Score=62.50 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=39.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC-------cC-------------ChHHHHHHHHhh---cCCcEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR-------VA-------------DDADLKSLLLQT---TSKSVI 279 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~-------~~-------------~~~~l~~l~~~~---~~~sII 279 (480)
-++++||||+|||+++..++..+ |..++.+.... +. ...++...+.+. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46788999999999988887654 55666653211 11 012333333322 247899
Q ss_pred EEeccccc
Q 011664 280 LIEDLDRF 287 (480)
Q Consensus 280 ~IDEiD~l 287 (480)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.05 E-value=0.00028 Score=63.57 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
.-|+|.|+|||||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999877
No 171
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.04 E-value=0.00027 Score=63.44 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-+.|.||||+||||+++.++..+|..++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4588999999999999999999888665543
No 172
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.02 E-value=0.00079 Score=70.46 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=55.4
Q ss_pred CcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCC-------------CccCcccccCCCceeEEE
Q 011664 276 KSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNS-------------KDHVDQALLRPGRIDVHI 342 (480)
Q Consensus 276 ~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~-------------~~~LD~aLlrpGRfd~~I 342 (480)
|.|+||||+|.+. ....+.|+..|+.- ... ++|++||. |..|+|.+++ ||.. +
T Consensus 296 ~~VliIDEa~~l~-----~~a~~aLlk~lEe~-----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~ 361 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----IECFTYLHRALESS-----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-I 361 (456)
T ss_dssp ECEEEEESGGGCB-----HHHHHHHHHHTTST-----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-E
T ss_pred ceEEEEechhhcC-----HHHHHHHHHHhhcc-----CCC-EEEEecCCccccccccccccccccCChhHHh--hcce-e
Confidence 4799999999883 34567777777532 223 56655533 7789999999 9976 6
Q ss_pred EcCCCCHHHHHHHHHHHhcc
Q 011664 343 HFPLCDFSSFKTLASSYLGL 362 (480)
Q Consensus 343 ~~~~p~~~~r~~il~~~l~~ 362 (480)
.|++|+.++..++++..+..
T Consensus 362 ~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp ECCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 173
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.00 E-value=0.00021 Score=66.93 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=27.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
+.-|+|.||||+||||+++.+|..++..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34689999999999999999999999765543
No 174
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.99 E-value=0.00034 Score=66.22 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
..|+|.|+|||||||+++.+|..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999877664
No 175
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.00047 Score=69.16 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
++.++|.||+|||||+++.++|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999988888863
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.97 E-value=0.0005 Score=63.38 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
+.-+.|.||||+||||+++.+++.+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4468899999999999999999998765543
No 177
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.96 E-value=0.00059 Score=61.53 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=29.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
..-+.|.|++||||||+++.++..+ |.+++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3457899999999999999999987 88888776
No 178
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.94 E-value=0.00055 Score=61.95 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
+.|.|+|||||||+++.++..+ |.+++..+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7899999999999999999987 888888763
No 179
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.93 E-value=0.0003 Score=63.54 Aligned_cols=20 Identities=45% Similarity=0.650 Sum_probs=17.2
Q ss_pred CceEEEEccCCCcHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAA 243 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~a 243 (480)
..-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34578999999999999994
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.93 E-value=0.0045 Score=61.12 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCCcCC----------
Q 011664 197 DLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSRVAD---------- 262 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~~~~---------- 262 (480)
.+++.+.+.+...+...... .+ ...++-+++.||+|+||||++..+|..+ |..+..++......
T Consensus 80 ~~~~~~~~~l~~~l~~~~~~-~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~ 157 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADKW-QE-PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA 157 (296)
T ss_dssp THHHHHHHHHHTTSCCGGGS-CC-CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccc-cc-cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH
Confidence 45566666555544322110 01 1234578899999999999999999754 55676666543221
Q ss_pred ------------hHHHHHHHHhhcCCcEEEEe
Q 011664 263 ------------DADLKSLLLQTTSKSVILIE 282 (480)
Q Consensus 263 ------------~~~l~~l~~~~~~~sII~ID 282 (480)
...++..+.....+.+|+||
T Consensus 158 ~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiD 189 (296)
T 2px0_A 158 ELLQAPLEVCYTKEEFQQAKELFSEYDHVFVD 189 (296)
T ss_dssp TTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEE
T ss_pred HhcCCCeEecCCHHHHHHHHHHhcCCCEEEEe
Confidence 12233344445677888888
No 181
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.92 E-value=0.00036 Score=65.04 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|+|.||||+||||+++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998877665
No 182
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.91 E-value=0.00051 Score=65.00 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=27.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
..++-|+|.||||+||+|.|+.+|..+|...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34567889999999999999999999886544
No 183
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.91 E-value=0.00043 Score=66.22 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=29.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.+.-|+|.||||+||||+++.++..++...++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3456999999999999999999999988777653
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.89 E-value=0.00045 Score=63.52 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=26.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-+.|.||+||||||+++.+|+ +|..+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 888777665
No 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.88 E-value=0.0058 Score=69.97 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=38.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC------CCcEEEEeCCC
Q 011664 193 SMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM------SYDVYDVDLSR 259 (480)
Q Consensus 193 ~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l------~~~~~~i~~s~ 259 (480)
+|-++..++|.+.+... ...+-+.++||+|.|||+||+.+++.. ...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 78888888877665420 124578899999999999999998632 33456666554
No 186
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.84 E-value=0.00062 Score=64.91 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
+.-+.|.||||+||||+++.+|..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999888765443
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.82 E-value=0.0017 Score=70.04 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcCC----------hHHHHHHHHhh-----------cCCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVAD----------DADLKSLLLQT-----------TSKSVIL 280 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~~----------~~~l~~l~~~~-----------~~~sII~ 280 (480)
+.+++.||||||||+++.+++..+ +..+..+..+.-.. ...+..++... ....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468899999999999999998754 66676664432110 11133333111 1348999
Q ss_pred Eeccccc
Q 011664 281 IEDLDRF 287 (480)
Q Consensus 281 IDEiD~l 287 (480)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999866
No 188
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.81 E-value=0.0015 Score=68.35 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~ 257 (480)
|+++..-+++.||||+|||+++..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666678999999999999999988743 557777764
No 189
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.0009 Score=61.22 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-CCcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-SYDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i~~ 257 (480)
.-|.|.|||||||||+++.+|..+ |.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 458899999999999999999998 578887764
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.80 E-value=0.00065 Score=61.98 Aligned_cols=29 Identities=24% Similarity=0.688 Sum_probs=25.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
-|.|.|+|||||||+++.+|..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 191
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.79 E-value=0.0007 Score=63.17 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
.-+.|.|||||||||+++.+++.+|+++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999976665
No 192
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.79 E-value=0.00071 Score=63.39 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
++|.||||+||+|.|+.+|..+|...++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7889999999999999999998876544
No 193
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.00073 Score=63.59 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
|+|.|||||||||+++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766554
No 194
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.00047 Score=62.27 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC---CcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS---YDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~---~~~~~i~ 256 (480)
-|+|.|||||||||+++.++..++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 478999999999999999999775 3355554
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00062 Score=62.79 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-+.|.||+||||||+++.+|. +|..+++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 478999999999999999998 888877653
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.00095 Score=60.62 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=26.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
|.|.|||||||||+++.++..+ |.+++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999988 988876653
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.74 E-value=0.0011 Score=60.94 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=26.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
+.-+.|.||+||||||+++++|..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999987 55444554
No 198
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0014 Score=68.51 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCCCCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CC-cEEEEeC
Q 011664 182 PFTHPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SY-DVYDVDL 257 (480)
Q Consensus 182 ~~~~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~-~~~~i~~ 257 (480)
+...|.+|+++ .+++++.+...+ .++.. ..+.+++.||||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~-~~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVM-KAIKE----------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHH-HHHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHHHHHH-HHHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 55567788876 444555444322 22222 12379999999999999999999866 33 4555544
Q ss_pred C
Q 011664 258 S 258 (480)
Q Consensus 258 s 258 (480)
+
T Consensus 83 T 83 (459)
T 3upu_A 83 T 83 (459)
T ss_dssp S
T ss_pred c
Confidence 3
No 199
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0011 Score=64.04 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~ 257 (480)
.-|+|.|+||+||||+++.++.. .|..++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 35889999999999999999997 7888875543
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.66 E-value=0.0044 Score=64.53 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHhhhh-HHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 196 TDLKNRVKSDLESFLKAKH-YYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~-~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
+.+.+.+.+.+...+.... ..... ...++-+++.||+|+||||++..+|..+ |..+..+++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455666666666554321 11111 1235678899999999999999999755 566655554
No 201
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.001 Score=60.69 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=27.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+.-|.|.|++|||||++++.+|.. |..+++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 346889999999999999999998 87777654
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0011 Score=60.80 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-+.|.||+|||||++++.+|..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887754
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.63 E-value=0.0049 Score=64.36 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+.+++.+.+.+...+..+...... ...+.-+++.||||+||||++..+|..+ |..+..+++.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445666666666665432111111 1135678999999999999999999755 6666666654
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.63 E-value=0.0082 Score=59.60 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 198 LKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 198 ~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
+++.+.+.+...+.....+ .+....+.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5666777666666432210 1112345568899999999999999999865 555655554
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.62 E-value=0.00084 Score=64.85 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
..+.|.||||+||||+++.+|..+|.++++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999888764
No 206
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0013 Score=60.32 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~ 256 (480)
.-|+|.|||||||||+++.+|..++. +++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec
Confidence 35889999999999999999998876 354443
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.61 E-value=0.0031 Score=58.55 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
|++...-+.|.||+|+|||+|++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555568899999999999999999843
No 208
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.0013 Score=62.93 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-+.|.||||||||++++.+|..+|+.++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4688999999999999999999999877654
No 209
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.59 E-value=0.0053 Score=58.32 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=27.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
.++++||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999888776666643
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.58 E-value=0.00091 Score=61.95 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
-+.|.|++||||||+++.++..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 5779999999999999999999898877754
No 211
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.53 E-value=0.01 Score=55.06 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=60.3
Q ss_pred eEEEEccCCCcHH-HHHHHHHHcC--CCcEEEEeCC---C----cCCh----------HHHHHHHHhhcCCcEEEEeccc
Q 011664 226 SYLLYGPSGTGKS-SFAAAMASFM--SYDVYDVDLS---R----VADD----------ADLKSLLLQTTSKSVILIEDLD 285 (480)
Q Consensus 226 giLL~GPpGTGKT-~La~aiA~~l--~~~~~~i~~s---~----~~~~----------~~l~~l~~~~~~~sII~IDEiD 285 (480)
=+++|||.|+||| .|++++.+.. +..++.+... . +.+. .....++.......+|+|||+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQ 101 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 101 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchh
Confidence 4789999999999 9999998754 6677777533 1 1110 0011122233456899999999
Q ss_pred ccccCcccccchhhhhhhcccccccccCCceEEEEe--cC---CCccCcccccCCCceeEEEEcC
Q 011664 286 RFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFT--MN---SKDHVDQALLRPGRIDVHIHFP 345 (480)
Q Consensus 286 ~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~t--TN---~~~~LD~aLlrpGRfd~~I~~~ 345 (480)
-+ .+ +.++++.+.. .+..||++. ++ .|..--+.|+- .-|.+.++.
T Consensus 102 Ff-k~------~ve~~~~L~~------~gk~VI~~GL~~DF~~~~F~~~~~Ll~--~Ad~v~kl~ 151 (195)
T 1w4r_A 102 FF-PD------IVEFCEAMAN------AGKTVIVAALDGTFQRKPFGAILNLVP--LAESVVKLT 151 (195)
T ss_dssp GC-TT------HHHHHHHHHH------TTCEEEEEEESBCTTSSBCTTGGGGGG--GCSEEEECC
T ss_pred hh-HH------HHHHHHHHHH------CCCeEEEEecccccccccchhHHHHHH--hcCeEEEee
Confidence 76 21 3455555531 233444442 32 34444456664 556555554
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.52 E-value=0.0075 Score=56.06 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=65.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc--C-Ch-----------------------------HHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV--A-DD-----------------------------ADLKSL 269 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~--~-~~-----------------------------~~l~~l 269 (480)
..+++|+++|.|||++|-++|-.+ |..+..+.+.+- . ++ ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358899999999999999998643 778887754331 0 00 011112
Q ss_pred HH----hh--cCCcEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCccCcccccCCCceeEEEE
Q 011664 270 LL----QT--TSKSVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKDHVDQALLRPGRIDVHIH 343 (480)
Q Consensus 270 ~~----~~--~~~sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~~LD~aLlrpGRfd~~I~ 343 (480)
+. .. ....+|++||+-.... -+-....+++..+..- .+..-||+|+|.+ +++|+. .-|.+-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~--~g~l~~~ev~~~l~~R-----p~~~~vIlTGr~a---p~~l~e--~AD~VTe 176 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVA--YDYLPLEEVISALNAR-----PGHQTVIITGRGC---HRDILD--LADTVSE 176 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHH--TTSSCHHHHHHHHHTS-----CTTCEEEEECSSC---CHHHHH--HCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCcccc--CCCCCHHHHHHHHHhC-----cCCCEEEEECCCC---cHHHHH--hCcceee
Confidence 21 12 3568999999965321 1123345566666422 4556788888854 455555 5555555
Q ss_pred cC
Q 011664 344 FP 345 (480)
Q Consensus 344 ~~ 345 (480)
+.
T Consensus 177 m~ 178 (196)
T 1g5t_A 177 LR 178 (196)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 213
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.51 E-value=0.0072 Score=64.92 Aligned_cols=74 Identities=7% Similarity=0.146 Sum_probs=50.6
Q ss_pred cEEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc--cCcccccCCCceeEEEEcCCCCHHHHHH
Q 011664 277 SVILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD--HVDQALLRPGRIDVHIHFPLCDFSSFKT 354 (480)
Q Consensus 277 sII~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~--~LD~aLlrpGRfd~~I~~~~p~~~~r~~ 354 (480)
-+|+|||+..+..... ....+.+..+-.... .-++-+|++|.+|. .|+..++. -|..+|.+...+..+-..
T Consensus 345 ivvVIDE~~~L~~~~~--~~~~~~L~~Iar~GR---a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG--KKVEELIARIAQKAR---AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHTC--HHHHHHHHHHHHHCT---TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhhh--HHHHHHHHHHHHHHh---hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHH
Confidence 5899999998764221 122233333322222 45778888999887 78888777 788899999999888777
Q ss_pred HHH
Q 011664 355 LAS 357 (480)
Q Consensus 355 il~ 357 (480)
++.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 763
No 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.51 E-value=0.00065 Score=62.59 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
+.-|.|.|+|||||||+++.++..++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3468899999999999999999876543
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.00091 Score=67.85 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
..++|.||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999887744
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.50 E-value=0.0032 Score=65.67 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=29.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDL 257 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~ 257 (480)
|+++..-+++.|+||+|||+++..+|... |.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666678999999999999999888642 566777665
No 217
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.48 E-value=0.0015 Score=65.93 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSR 259 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~ 259 (480)
+-++|.||+|||||+|+..+|..++..|++.|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 46889999999999999999999998888877543
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.43 E-value=0.0048 Score=61.85 Aligned_cols=62 Identities=13% Similarity=0.365 Sum_probs=41.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC--cEEEEeCCC-c-----------C--ChHHHHHHHHhh--cCCcEEEEecccc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY--DVYDVDLSR-V-----------A--DDADLKSLLLQT--TSKSVILIEDLDR 286 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~--~~~~i~~s~-~-----------~--~~~~l~~l~~~~--~~~sII~IDEiD~ 286 (480)
..+++.||+|+|||||++++++.... ..+.++-.. + . +....+..++.+ ..|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 46999999999999999999998743 344443211 0 0 122234444433 5899999999874
No 219
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.43 E-value=0.0016 Score=60.53 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
..+.|.|+||||||++++.+|..+|.++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35889999999999999999999998877653
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0017 Score=60.48 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-+.|.|++||||||+++.++. +|.++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4588999999999999999998 888777654
No 221
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.42 E-value=0.0016 Score=60.10 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-CCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-SYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~i 255 (480)
.-+.|.||||+||||+++.+++.+ +..++..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 357799999999999999999987 5544443
No 222
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.41 E-value=0.0071 Score=64.26 Aligned_cols=73 Identities=10% Similarity=0.194 Sum_probs=48.5
Q ss_pred EEEEecccccccCcccccchhhhhhhcccccccccCCceEEEEecCCCc--cCcccccCCCceeEEEEcCCCCHHHHHHH
Q 011664 278 VILIEDLDRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTMNSKD--HVDQALLRPGRIDVHIHFPLCDFSSFKTL 355 (480)
Q Consensus 278 II~IDEiD~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tTN~~~--~LD~aLlrpGRfd~~I~~~~p~~~~r~~i 355 (480)
+|+|||...+.... .....+++..+-.... .-++-+|++|.+|. .++..++. -+..+|.|...+..+.+.+
T Consensus 300 vlvIDE~~~ll~~~--~~~~~~~l~~Lar~gR---a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~i 372 (512)
T 2ius_A 300 VVLVDEFADLMMTV--GKKVEELIARLAQKAR---AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTI 372 (512)
T ss_dssp EEEEETHHHHHHHH--HHHHHHHHHHHHHHCG---GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHH
T ss_pred EEEEeCHHHHHhhh--hHHHHHHHHHHHHHhh---hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHh
Confidence 89999998775411 1122333333322211 23567788888886 57777777 7888999999999888877
Q ss_pred HH
Q 011664 356 AS 357 (480)
Q Consensus 356 l~ 357 (480)
+.
T Consensus 373 lg 374 (512)
T 2ius_A 373 LD 374 (512)
T ss_dssp HS
T ss_pred cC
Confidence 64
No 223
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.39 E-value=0.0026 Score=61.11 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
.-+.|.||+||||||+++.+|..+|..+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357899999999999999999999987664
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.39 E-value=0.0021 Score=58.36 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-+.|.||||+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.0019 Score=59.58 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..++-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455789999999999999999999875
No 226
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.38 E-value=0.0009 Score=61.68 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+.-|.|.|+|||||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999998764
No 227
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.37 E-value=0.0013 Score=64.37 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=24.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC-CCcEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM-SYDVYD 254 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l-~~~~~~ 254 (480)
.-|+|.||||+||||+++.++..+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 468999999999999999999864 655443
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.0026 Score=59.69 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLSR 259 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s~ 259 (480)
|++...-++|+||||+|||+++..+|.. .+..+++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5556667899999999999998888753 366777777543
No 229
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.35 E-value=0.0024 Score=63.60 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=30.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
.++-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 34568899999999999999999999988877764
No 230
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.34 E-value=0.0061 Score=66.57 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=37.4
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR 259 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~ 259 (480)
+..|-+-...+++++.+...+. . +.-.|+.||||||||+++..+...+ +..+..+..+.
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3444444567888888775442 1 1246899999999997655544332 66677666653
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0023 Score=57.96 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.29 E-value=0.0025 Score=58.27 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999987
No 233
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0029 Score=59.83 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
..+.|.|++|||||++++.+|..+|.++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3578999999999999999999999877664
No 234
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.26 E-value=0.0023 Score=61.18 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=30.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc--------EEEEeCCCcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD--------VYDVDLSRVA 261 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~--------~~~i~~s~~~ 261 (480)
+.-|.|.||||||||++++.+|..++.+ +..+++..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3468899999999999999999999876 3356655543
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0039 Score=56.41 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=26.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
+.-++|.|+||+||||+++.+|..+ +.++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3468899999999999999999876 34455554
No 236
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.16 E-value=0.0083 Score=55.21 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=27.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3457899999999999999999865 6667666543
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.16 E-value=0.0028 Score=59.24 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=26.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.++++|.||+|+|||+||.+++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999998876 555543
No 238
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.15 E-value=0.0018 Score=66.98 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
+.-|+|.||||+||||+++.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568899999999999999999998765544
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.15 E-value=0.0026 Score=64.22 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-+.+.||+|+|||+++..+|..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987666655
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.14 E-value=0.0032 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.312 Sum_probs=23.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
+.-+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345889999999999999999998753
No 241
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.10 E-value=0.0026 Score=62.24 Aligned_cols=31 Identities=35% Similarity=0.360 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-|.|.|+|||||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 5787766543
No 242
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.04 E-value=0.0035 Score=62.53 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+-+++.||+|+|||+|+..+|..++..+++.|
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35789999999999999999999987776655
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0039 Score=57.81 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=27.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEe
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVD 256 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~ 256 (480)
.+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 345688999999999999999998764 4566665
No 244
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.02 E-value=0.0079 Score=62.64 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=43.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCcC------------------------C-h--HHHHHHHHhh
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRVA------------------------D-D--ADLKSLLLQT 273 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~~------------------------~-~--~~l~~l~~~~ 273 (480)
++.+++.||||+||||++..+|..+ |..+..+++.... + + .-+...+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999866 4566666543210 0 0 1123445445
Q ss_pred cCCcEEEEeccccc
Q 011664 274 TSKSVILIEDLDRF 287 (480)
Q Consensus 274 ~~~sII~IDEiD~l 287 (480)
....+++||....+
T Consensus 179 ~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 179 KKADVLIIDTAGRH 192 (432)
T ss_dssp SSCSEEEEECCCSC
T ss_pred hCCCEEEEcCCCCc
Confidence 66789999988754
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.02 E-value=0.0049 Score=57.05 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=26.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~ 257 (480)
..-+.|.||+|+|||||++.++..+. ...-.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 34577999999999999999999875 33445544
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.00 E-value=0.0048 Score=56.84 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
|.|+|.||+|+|||+|++.+.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999987764333
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.98 E-value=0.0043 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|+||||+++.+++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3577999999999999999999863
No 248
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.98 E-value=0.0038 Score=57.96 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYD 254 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~ 254 (480)
-|.+.||+|||||++++.+|..+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999886
No 249
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.93 E-value=0.011 Score=66.93 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=20.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHH
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
...-+.|.||.|+||||+.+.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345688999999999999999874
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0057 Score=60.61 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhC--CCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLG--RVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g--~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566777777776664322001122 2344567899999999999999999865
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.90 E-value=0.0042 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+-+.|.||+|+||||+++.+++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.023 Score=60.46 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
|++...-++|.||||+|||+|++.++... |..++++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45555668999999999999999998753 44454443
No 253
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.82 E-value=0.012 Score=53.85 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.4
Q ss_pred EEEEccCCCcHHHHHHHHHHcCCCcEEEEeCCCc
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMSYDVYDVDLSRV 260 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~~~~~~i~~s~~ 260 (480)
+|++|++|+|||++|..+|.. +.+.+++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888887654
No 254
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.81 E-value=0.014 Score=62.01 Aligned_cols=62 Identities=21% Similarity=0.392 Sum_probs=40.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC--CcEEEEeCCC-cC-----------------ChHHHHHHHHhh--cCCcEEEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS--YDVYDVDLSR-VA-----------------DDADLKSLLLQT--TSKSVILI 281 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~--~~~~~i~~s~-~~-----------------~~~~l~~l~~~~--~~~sII~I 281 (480)
..++++.||+|+||||+++++++.+. ..++.+.-.. +. +...+..++... ..|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34699999999999999999999874 3455553211 11 011233333322 47999999
Q ss_pred eccc
Q 011664 282 EDLD 285 (480)
Q Consensus 282 DEiD 285 (480)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9974
No 255
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.73 E-value=0.0051 Score=56.66 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-+.|.||+|+||||+++.+++.++..+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 35779999999999999999998773344444
No 256
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0075 Score=61.28 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhC--CCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 196 TDLKNRVKSDLESFLKAKHYYHRLG--RVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 196 ~~~k~~l~e~l~~~l~~~~~~~~~g--~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566677777766664322101222 3345568899999999999999999865
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.67 E-value=0.0055 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.+-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.65 E-value=0.008 Score=53.75 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+...-+.|.||.|+|||||++++++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344457899999999999999999987
No 259
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.64 E-value=0.022 Score=57.97 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+-|.||+|+|||||+++|+...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 347799999999999999999865
No 260
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.0054 Score=63.18 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
+.-+++.||+|+|||+|+..+|..++..++..|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999999887776654
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.61 E-value=0.0029 Score=58.27 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-|.+.||+|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998753
No 262
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.0089 Score=63.17 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.+.-+.|.||+|+||||+++.||+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34457899999999999999999865
No 263
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.54 E-value=0.022 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 264
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.54 E-value=0.027 Score=59.72 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhCC--CCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 197 DLKNRVKSDLESFLKAKHYYHRLGR--VWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~~~~~~g~--~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
.+.+.+.+.+...+..... .+.. ..++.|++.|+||+||||++..+|..+ |..+..+++
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3455556656555543210 1111 235578999999999999999999765 666666655
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.54 E-value=0.0093 Score=58.70 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.+.-+.+.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344578999999999999999998875
No 266
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.51 E-value=0.0075 Score=56.48 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||+|+|||||++.+++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999976
No 267
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.51 E-value=0.019 Score=64.36 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
.+-+.|.||.|+|||++.+.+|.
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 34688999999999999999986
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.50 E-value=0.0082 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..-+.|.||+|+|||||+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34577999999999999999999874
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.50 E-value=0.009 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.+-+.|.||+|+|||+|+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999998764
No 270
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.49 E-value=0.0079 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
+.+++.+|+|+|||.++...+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988877654
No 271
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.49 E-value=0.016 Score=57.87 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhhHH---hhhC--CCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 198 LKNRVKSDLESFLKAKHYY---HRLG--RVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 198 ~k~~l~e~l~~~l~~~~~~---~~~g--~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
+++.+.+.+...+.....- ..+. ...++-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5666666666666533200 1122 2345678899999999999999999754 5666666654
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.48 E-value=0.0072 Score=58.97 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s 258 (480)
|++...-++|.||||+|||+|++.+|..+ |.++..++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 55556678899999999999999998754 4466666543
No 273
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.43 E-value=0.0095 Score=59.16 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=27.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
.++....+.|.||+|+|||||++.|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 455666789999999999999999999873333
No 274
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.36 E-value=0.011 Score=64.34 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=29.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
+.-|+|.|+||+||||++++++..+ |.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3458899999999999999999998 99999886
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.29 E-value=0.024 Score=52.26 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=37.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCC--------cC---C-------hHHHHHHHHhhc-CCcEEEEec
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSR--------VA---D-------DADLKSLLLQTT-SKSVILIED 283 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~--------~~---~-------~~~l~~l~~~~~-~~sII~IDE 283 (480)
-++++||+|+|||+.+-.+|..+ |..+..+.... +. + -.....++.... ...+|+|||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViIDE 89 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAIDE 89 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEECS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEEC
Confidence 46789999999998888877654 66655553110 00 0 000123343333 358999999
Q ss_pred cccc
Q 011664 284 LDRF 287 (480)
Q Consensus 284 iD~l 287 (480)
+.-+
T Consensus 90 aqfl 93 (191)
T 1xx6_A 90 VQFF 93 (191)
T ss_dssp GGGS
T ss_pred CCCC
Confidence 9865
No 276
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.28 E-value=0.0075 Score=57.48 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-+-|.||||+||||+++.+|..++...++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 356889999999999999999998776654
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.27 E-value=0.017 Score=57.37 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
|+++..-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998643 4677777765
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.26 E-value=0.01 Score=57.49 Aligned_cols=63 Identities=24% Similarity=0.473 Sum_probs=39.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEe--CCCcC--------------ChHHHHHHHHhh--cCCcEEE
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVD--LSRVA--------------DDADLKSLLLQT--TSKSVIL 280 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~--~s~~~--------------~~~~l~~l~~~~--~~~sII~ 280 (480)
...-+++.||+|+||||+++++++.+. ..++... ...+. ....++..++.+ ..|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 344578999999999999999998652 2333222 11100 011233334332 4899999
Q ss_pred Eeccc
Q 011664 281 IEDLD 285 (480)
Q Consensus 281 IDEiD 285 (480)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99984
No 279
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.25 E-value=0.047 Score=64.45 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 221 RVWKRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
+++..-+.+.||+|+|||||++++.++...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 334456889999999999999999998754
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.24 E-value=0.047 Score=53.79 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=29.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLSRV 260 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s~~ 260 (480)
+.-+.+.||+|+|||+++..+|..+ +..+..+++.-.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567889999999999999999765 667777776543
No 281
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.24 E-value=0.011 Score=55.66 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...-+.|.||+|+|||||++++++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345678999999999999999999775
No 282
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.22 E-value=0.014 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.+|+||.||+|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 469999999999999999999874
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.20 E-value=0.05 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 284
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.19 E-value=0.0094 Score=56.42 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
.-|.+.|++|||||++++.+|..+|+++++-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 3578999999999999999999999998763
No 285
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.16 E-value=0.033 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...+++.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999854
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.12 E-value=0.02 Score=57.30 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhh---HH-hhhCCCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 197 DLKNRVKSDLESFLKAKH---YY-HRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~---~~-~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.+++.+.+.+...+.... .. .......+.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445556666655554321 00 01122345568899999999999999999865
No 287
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.11 E-value=0.033 Score=54.82 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCccccccChHHHHHHHHHHHHHHhhhhHHhhhC----CCCCceEEEEccCCCcHHHHHHHHH
Q 011664 187 STFDTISMETDLKNRVKSDLESFLKAKHYYHRLG----RVWKRSYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g----~~~~rgiLL~GPpGTGKT~La~aiA 245 (480)
.+|+++...+.+.+.+.+.- ...+..+.... ..-.+.+++.+|+|+|||..+-..+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHH
Confidence 46788877777776665421 01111111110 0113579999999999998765444
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.11 E-value=0.048 Score=62.02 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA 245 (480)
.-++|.||.|+||||+++.+|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999995
No 289
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.08 E-value=0.0098 Score=56.30 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC--CcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS--YDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~--~~~~~i 255 (480)
-+.|.||||+||||+++.++..++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 477889999999999999999886 455443
No 290
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.06 E-value=0.012 Score=56.00 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999987753
No 291
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.05 E-value=0.01 Score=60.41 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 221 RVWKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 221 ~~~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
......+++.||+|+||||+++++++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344568899999999999999999865
No 292
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.99 E-value=0.05 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999863
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.96 E-value=0.011 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+.|.||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999865
No 294
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.90 E-value=0.031 Score=57.91 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEe
Q 011664 186 PSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVD 256 (480)
Q Consensus 186 ~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~ 256 (480)
..+++++....+.+..+.+. +. ....-+++.||+|+||||+++++++.+. .+++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l----~~----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL----IK----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH----HT----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCCHHHcCCCHHHHHHHHHH----HH----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 45788887766554433321 11 1223478999999999999999999774 2455443
No 295
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.83 E-value=0.11 Score=44.72 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHHH
Q 011664 227 YLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~ 246 (480)
+++.|++|+|||+|+.++.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.80 E-value=0.0094 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=15.7
Q ss_pred CceEEEEccCCCcHHHHHHHHH-HcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMA-SFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA-~~l 248 (480)
..-+.|.||+|+||||+++.++ +.+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3457899999999999999999 765
No 297
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.80 E-value=0.047 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.014 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
....+++.|++|+|||+|+.++.+.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.73 E-value=0.016 Score=52.57 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.+.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998764
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.051 Score=47.05 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.6
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 301
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.71 E-value=0.019 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999998775
No 302
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.70 E-value=0.0082 Score=59.01 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=26.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC---CcEEEEeCCCcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS---YDVYDVDLSRVA 261 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~---~~~~~i~~s~~~ 261 (480)
-|.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999998775 456667766655
No 303
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.68 E-value=0.044 Score=48.95 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
--+++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 304
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.046 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 305
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.68 E-value=0.045 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 306
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.062 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 307
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.62 E-value=0.048 Score=58.65 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...-+.+.||+|+|||||++.+++...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 334578999999999999999998764
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.55 E-value=0.038 Score=55.19 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC-----cEEEEeCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY-----DVYDVDLSR 259 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~-----~~~~i~~s~ 259 (480)
.-+-|.||+||||||+++.++..++. .+..+....
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 35779999999999999999987752 355555444
No 309
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.53 E-value=0.026 Score=60.11 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=26.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
+.-|+|.|+||+|||++++.+|..+ +.+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4468999999999999999999987 44444443
No 310
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.48 E-value=0.066 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999863
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.44 E-value=0.036 Score=57.68 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCCC
Q 011664 198 LKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLSR 259 (480)
Q Consensus 198 ~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s~ 259 (480)
+.+.+.+.+...+.....--......++.+++.|++|+||||++..+|..+ |..+.-+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345555555555543210000111345678899999999999999999654 77777777654
No 312
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.44 E-value=0.011 Score=56.62 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-|.|.|++|+||||+++.++..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578999999999999999999983
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.39 E-value=0.067 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+++.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998754
No 314
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.028 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-|.+.|++|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999984
No 315
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.35 E-value=0.016 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.-+.|.||+|+|||||++++++.+...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347799999999999999999877543
No 316
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.34 E-value=0.02 Score=54.71 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-+.|.||+|+|||||++++++.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56789999999999999999987653
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.34 E-value=0.019 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.|.||+|+|||||++++++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458899999999999999999865
No 318
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.34 E-value=0.055 Score=53.79 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCccccccChHHHHHHHHHHH-HHHh-hhhHHhhhCCCCCceEEEEccCCCcHHHHHH
Q 011664 187 STFDTISMETDLKNRVKSDLE-SFLK-AKHYYHRLGRVWKRSYLLYGPSGTGKSSFAA 242 (480)
Q Consensus 187 ~~~~~i~g~~~~k~~l~e~l~-~~l~-~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~ 242 (480)
.+|+++...+.+.+.+.+.-. .+.. ..+.+..+-...++.+++.+|+|+|||..+-
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 467777777777776654110 0000 0111111111133689999999999997654
No 319
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.32 E-value=0.019 Score=54.54 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
..-+.|.||+|+|||||++++++.+...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3457899999999999999999877544
No 320
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.31 E-value=0.017 Score=57.06 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+-|.||+|+||||+++.+++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999765
No 321
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.30 E-value=0.021 Score=61.52 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~~ 257 (480)
.-|+|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3578999999999999999999886 67777763
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.28 E-value=0.023 Score=56.48 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=34.9
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccCCCCCchhHHHHHHhCCCCCHHHHHHHHHH
Q 011664 330 QALLRPGRIDVHIHFPLCDFSSFKTLASSYLGLKDHKLFPQVEEIFQNGSSLSPAEIGELMIA 392 (480)
Q Consensus 330 ~aLlrpGRfd~~I~~~~p~~~~r~~il~~~l~~~~~~l~~~i~~l~~~~~g~s~adI~~ll~~ 392 (480)
+.+.. .||..|.+..+.......++++.....+.. ..+.+.......|+|..++.+.+..
T Consensus 212 ~~l~~--~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~-~r~~~~~~~~~~g~s~e~a~~~v~~ 271 (312)
T 3aez_A 212 LMVSD--LFDFSLYVDARIEDIEQWYVSRFLAMRTTA-FADPESHFHHYAAFSDSQAVVAARE 271 (312)
T ss_dssp CCGGG--GCSEEEEEEECHHHHHHHHHHHHHHHTTTG-GGSTTSTTGGGTTCCHHHHHHHHHH
T ss_pred HHHHH--hcCcEEEEECCHHHHHHHHHHHHHHHHhcc-ccCcchhhhcccCCCHHHHHHHHHH
Confidence 44555 789999999887666666666654311111 0111122233358899998877654
No 323
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.28 E-value=0.024 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999865
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.23 E-value=0.087 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 325
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.21 E-value=0.088 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred CceEEEEccCCCcHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMA 245 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA 245 (480)
.+-++|.||.|+|||++++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568899999999999999984
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.20 E-value=0.039 Score=49.96 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
.-+.+.|++|+|||+++..++..+ |..+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 358899999999999999999865 555555553
No 327
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.20 E-value=0.079 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 328
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.18 E-value=0.018 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-+.|.||+|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999975
No 329
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.16 E-value=0.028 Score=52.74 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i~~ 257 (480)
.+-|.|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 578999999999999999998 9999988763
No 330
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.12 E-value=0.025 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 331
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.11 E-value=0.026 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.||+|+|||+|++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999985
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.11 E-value=0.054 Score=54.48 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=31.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHc---CCCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASF---MSYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~---l~~~~~~i~~s 258 (480)
|+.+..-++|.|+||+|||+++..+|.. .+.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5556666899999999999999999875 36777777653
No 333
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.11 E-value=0.065 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 334
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.03 E-value=0.036 Score=58.45 Aligned_cols=39 Identities=21% Similarity=0.035 Sum_probs=30.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s 258 (480)
|+++..-++|.|+||+|||+++..+|..+ |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555668999999999999999988643 5678888764
No 335
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.03 E-value=0.026 Score=56.97 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=24.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
..-+.|.||+|+|||||++.+++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999999999999999987654
No 336
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.99 E-value=0.043 Score=57.17 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=31.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
|+.+..-+++.|+||+|||+++..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 55555668999999999999999888644 6778887765
No 337
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.99 E-value=0.024 Score=61.59 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=24.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLS 258 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s 258 (480)
..++.||||||||+++..++..+ +..+..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999887776543 4456555544
No 338
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.96 E-value=0.037 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.-+.|.||.|+|||||++++++.+...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 357899999999999999999876543
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.96 E-value=0.03 Score=48.16 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.94 E-value=0.022 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-+.|.||+|+|||||++++++.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34779999999999999999987754
No 341
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.93 E-value=0.074 Score=55.14 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhCCCCCceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 197 DLKNRVKSDLESFLKAKHYYHRLGRVWKRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 197 ~~k~~l~e~l~~~l~~~~~~~~~g~~~~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
.+++.+.+.+...+.... ..+....+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 344555555554443211 11222235568889999999999999999765 5566666553
No 342
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.93 E-value=0.025 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.-+.|.||+|+|||||++++++.+...
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347799999999999999999977543
No 343
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.12 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
-.+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999986
No 344
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.90 E-value=0.025 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..-+.|.||+|+|||||++++++.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998653
No 345
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.90 E-value=0.029 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
.+.|.||+|+|||||++++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 346
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.85 E-value=0.024 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..-+.|.||.|+|||||++++++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34578999999999999999998764
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.85 E-value=0.027 Score=57.19 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+.|.||+|||||||.++||+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47799999999999999999865
No 348
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.84 E-value=0.031 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 349
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.82 E-value=0.015 Score=60.87 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=23.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+.-|+|.|.||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44689999999999999999998764
No 350
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.78 E-value=0.025 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.-+.|.||.|+|||||++.+++.+...
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 347799999999999999999977543
No 351
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.77 E-value=0.028 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...-+.|.||+|+|||||+++|++.+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 334588999999999999999998764
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.76 E-value=0.029 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-+.|.||+|+|||||++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999986
No 353
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.76 E-value=0.032 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999754
No 354
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.76 E-value=0.025 Score=54.13 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=23.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
..-+.|.||+|+|||||++.|++.+...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3457899999999999999999977543
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.75 E-value=0.038 Score=53.01 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~~~~i~ 256 (480)
.-+.|.||.|+|||||++++++.+... =.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~ 57 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ 57 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE
Confidence 357899999999999999999987654 4443
No 356
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.75 E-value=0.025 Score=55.18 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|+|||||++++++.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3478999999999999999998663
No 357
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.74 E-value=0.085 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 358
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.73 E-value=0.029 Score=54.38 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=23.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
..-+.|.||+|+|||||++++++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 335779999999999999999987754
No 359
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.72 E-value=0.024 Score=53.09 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46788999999999999999876 45555443
No 360
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.72 E-value=0.029 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
..-+.|.||+|+|||||++.|++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345789999999999999999987643
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.62 E-value=0.037 Score=56.01 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
...++|.||+|+|||||++++++...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44689999999999999999998764
No 362
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.61 E-value=0.038 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 363
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.60 E-value=0.035 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||.|+|||||++.|++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999964
No 364
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.60 E-value=0.032 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.|+||+|||+|+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999863
No 365
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.58 E-value=0.028 Score=54.91 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCCc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSYD 251 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~~ 251 (480)
.-+.|.||.|+|||||++++++.+...
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 347899999999999999999977543
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.57 E-value=0.032 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|||||||.++||+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998663
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.52 E-value=0.028 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-+.|.||+|+|||||++++++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 35779999999999999999987643
No 368
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.50 E-value=0.034 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-+.|.||+|||||||.++||+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 477999999999999999998663
No 369
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.48 E-value=0.03 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|+|||||++++++.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999999998764
No 370
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.48 E-value=0.038 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-+.|.||+|||||||+++||+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 477999999999999999998663
No 371
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.48 E-value=0.04 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 372
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.48 E-value=0.041 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
.+++.|++|+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.48 E-value=0.034 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-+.|.||.|+|||||++++++.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35789999999999999999987643
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.48 E-value=0.038 Score=56.04 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
-+.|.||+|||||||.++||+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 477999999999999999998653
No 375
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.47 E-value=0.04 Score=52.25 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=21.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC-------CCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM-------SYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l-------~~~~~~i 255 (480)
-|.|.||+|+||||+++.++..+ |.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 37788999999999999999877 5555544
No 376
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.44 E-value=0.034 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..-+.|.||.|+|||||+++|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33577999999999999999998664
No 377
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.43 E-value=0.042 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 378
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.42 E-value=0.035 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|+||+|||+|+.++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999753
No 379
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.41 E-value=0.029 Score=50.18 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|+||+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 380
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.41 E-value=0.036 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.||+|||||||.++||+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347799999999999999999865
No 381
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.37 E-value=0.036 Score=56.45 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.||+|||||||.++||+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 347799999999999999999865
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.37 E-value=0.15 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.|+||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999753
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.36 E-value=0.044 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.35 E-value=0.053 Score=50.98 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=24.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
-|.+.||+|+||||+++.++..++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 4778899999999999999999986443
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.32 E-value=0.045 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 386
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.32 E-value=0.12 Score=50.73 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=27.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeCC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDLS 258 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~s 258 (480)
++.+.+.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567788999999999999999754 5566666553
No 387
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.28 E-value=0.034 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.||+|+|||||++++++.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999876
No 388
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.27 E-value=0.14 Score=48.02 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=22.8
Q ss_pred EEEEccCCCcHHHHHHHHHHc---CCCcEEEEe
Q 011664 227 YLLYGPSGTGKSSFAAAMASF---MSYDVYDVD 256 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~---l~~~~~~i~ 256 (480)
++++||.|+|||+.+-.+|.. .|..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 458999999999888777653 366666665
No 389
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.27 E-value=0.047 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 390
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.25 E-value=0.043 Score=58.23 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
..|.|.|++||||||+++++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999875
No 391
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.21 E-value=0.026 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.+.+.||+|+|||||++.+++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998763
No 392
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.19 E-value=0.043 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.|++|+|||+|+.++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 393
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.17 E-value=0.035 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.732 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|||||||.+.||+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3477999999999999999998663
No 394
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.17 E-value=0.034 Score=59.65 Aligned_cols=33 Identities=33% Similarity=0.323 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC----CcEEEEeC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS----YDVYDVDL 257 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~----~~~~~i~~ 257 (480)
..+.|.||+||||||+++++|..++ ..+..++.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 4578999999999999999999874 24544543
No 395
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.15 E-value=0.065 Score=53.99 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=24.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
-+.|.||+|+|||+|++.|++....+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 4789999999999999999998876543
No 396
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.14 E-value=0.039 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
+-+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999998877654
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.10 E-value=0.05 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-+++.|+||+|||+|+.++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.10 E-value=0.05 Score=47.56 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.6
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 399
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.10 E-value=0.05 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
-.+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.07 E-value=0.046 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-.+++||.|+|||+++.||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998644
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.05 E-value=0.05 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.0
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999999974
No 402
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.02 E-value=0.064 Score=53.97 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~ 256 (480)
.-+.|.|+||+|||+++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 468899999999999999998765 55554444
No 403
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.00 E-value=0.047 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.91 E-value=0.071 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
...+++.|++|+|||+|+.++.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999976
No 405
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.063 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-.+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999864
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.88 E-value=0.047 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||+|||||||+++||+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3457899999999999999999854
No 407
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.88 E-value=0.041 Score=61.59 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=22.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDL 257 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~ 257 (480)
-.++.||||||||+++..++..+ +..+..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~ 408 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 408 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 57899999999999887776543 344544443
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.88 E-value=0.056 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.88 E-value=0.057 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.87 E-value=0.056 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 411
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.87 E-value=0.097 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.+-.++.|+||||||+++..+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345689999999999999888753
No 412
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.85 E-value=0.074 Score=47.49 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
...+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.84 E-value=0.057 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 414
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.84 E-value=0.051 Score=57.73 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=20.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHH
Q 011664 220 GRVWKRSYLLYGPSGTGKSSFAAAM 244 (480)
Q Consensus 220 g~~~~rgiLL~GPpGTGKT~La~ai 244 (480)
+++...-++|.||+|||||+|++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3445567899999999999999994
No 415
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.83 E-value=0.051 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.|+||+|||+|+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999974
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.83 E-value=0.066 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
..-+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999976
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.83 E-value=0.047 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-|.+.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999866
No 418
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.83 E-value=0.076 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+.|.||+|+|||||++++++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999843
No 419
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.82 E-value=0.047 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.||.|+|||||+++|++.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3357899999999999999999866
No 420
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.81 E-value=0.072 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHH
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
....+++.|++|+|||+|+.++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998873
No 421
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.80 E-value=0.034 Score=56.24 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.||+|||||||.++||+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999865
No 422
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.80 E-value=0.058 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 423
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.80 E-value=0.058 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 424
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.77 E-value=0.059 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.75 E-value=0.061 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.72 E-value=0.079 Score=55.12 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=23.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
-+.|.||+|||||+|++.||+....+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 478999999999999999999886553
No 427
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.69 E-value=0.062 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.61 E-value=0.054 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999999863
No 429
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.57 E-value=0.59 Score=44.37 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=56.5
Q ss_pred eEEEEccCCCcHHHHHHHHH-H--cCCCcEEEEeCCC--cCChHHH----------------HHHHHhhcCCcEEEEecc
Q 011664 226 SYLLYGPSGTGKSSFAAAMA-S--FMSYDVYDVDLSR--VADDADL----------------KSLLLQTTSKSVILIEDL 284 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA-~--~l~~~~~~i~~s~--~~~~~~l----------------~~l~~~~~~~sII~IDEi 284 (480)
-.++|||.|+|||+.+-..+ + ..|..++.+.... -.+ ..+ ..++.......+|+|||+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEa 99 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 99 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEch
Confidence 46788999999996555444 3 3355555554211 001 111 112223345689999999
Q ss_pred cccccCcccccchhhhhhhcccccccccCCceEEEEec------CCCccCcccccCCCceeEEEEcC
Q 011664 285 DRFLVEKPAAVSLSGVLNFMDGVLNSCCFEERVMVFTM------NSKDHVDQALLRPGRIDVHIHFP 345 (480)
Q Consensus 285 D~l~~~~~~~~~ls~lL~~ldg~~~~~~~~~~ivI~tT------N~~~~LD~aLlrpGRfd~~I~~~ 345 (480)
.-+. . +.++++.++. .+.-||+|. +.|..-.+.|+- .-|.+.++.
T Consensus 100 QF~~-----~--v~el~~~l~~-------~gi~VI~~GL~~DF~~~~F~~~~~Ll~--~AD~Vtelk 150 (234)
T 2orv_A 100 QFFP-----D--IVEFCEAMAN-------AGKTVIVAALDGTFQRKPFGAILNLVP--LAESVVKLT 150 (234)
T ss_dssp GGCT-----T--HHHHHHHHHH-------TTCEEEEECCSBCTTSSBCTTGGGGGG--GCSEEEECC
T ss_pred hhhh-----h--HHHHHHHHHh-------CCCEEEEEecccccccCCcccHHHHHH--hcccEEeee
Confidence 9762 1 5667776654 123344442 234445666765 666666654
No 430
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.56 E-value=0.23 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.|+||+|||+|..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999863
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.56 E-value=0.06 Score=47.14 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 432
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.48 E-value=0.097 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC--CCcEEEEeCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM--SYDVYDVDLS 258 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l--~~~~~~i~~s 258 (480)
..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357789999999999999999765 5666666543
No 433
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.063 Score=56.25 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
...-+.|.||.|+|||||++.+++.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33458899999999999999999865
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.071 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 435
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.42 E-value=0.071 Score=46.95 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.41 E-value=0.07 Score=47.60 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 437
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.41 E-value=0.071 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 438
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.35 E-value=0.071 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-+++.|+||+|||+|+.++.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999997
No 439
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.32 E-value=0.097 Score=52.06 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=23.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
.+|++|.|++|+|||++|.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 468999999999999999999875 4433
No 440
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.31 E-value=0.035 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.|.|++|+|||+|++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358899999999999999987643
No 441
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.31 E-value=0.061 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
=|.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999876
No 442
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.27 E-value=0.069 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+.|.|+||+|||+|+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.26 E-value=0.083 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 444
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.071 Score=48.97 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
..+.+.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 445
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.24 E-value=0.06 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
.-+.|.||||+|||||++++++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999754
No 446
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.063 Score=60.14 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=23.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC----CCcEEEEeCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM----SYDVYDVDLS 258 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l----~~~~~~i~~s 258 (480)
-+++.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999998877665433 4556665544
No 447
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.24 E-value=0.048 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 222 VWKRSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 222 ~~~rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+...-+.|.||+|+|||||++.+++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3445688999999999999999998764
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.24 E-value=0.095 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
.--+++.|++|+|||+|+.++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999964
No 449
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.19 E-value=0.079 Score=46.55 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.16 E-value=0.066 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-|.+.|++|+|||++++.++..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999987654
No 451
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.14 E-value=0.078 Score=47.47 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHcC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l 248 (480)
-+++.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998743
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.06 E-value=0.082 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999999863
No 453
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.05 E-value=0.099 Score=51.94 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=23.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcCCCcEE
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFMSYDVY 253 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l~~~~~ 253 (480)
.+|+||.||+|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 56899999999999999998865 344443
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.05 E-value=0.082 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 455
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.04 E-value=0.082 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
.-+++.|++|+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999985
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.02 E-value=0.084 Score=47.10 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.6
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999985
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.01 E-value=0.084 Score=47.19 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 458
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.98 E-value=0.076 Score=47.91 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 459
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.97 E-value=0.14 Score=51.91 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=25.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC---CCcEEEEeC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM---SYDVYDVDL 257 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l---~~~~~~i~~ 257 (480)
..++++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578999999999999999988642 444444443
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.97 E-value=0.083 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 461
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.96 E-value=0.086 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 462
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.95 E-value=0.096 Score=49.07 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=23.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcEEEE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDVYDV 255 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~~~i 255 (480)
-+.|.||.|+||||+++.+++. +..+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4678899999999999999987 4444433
No 463
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.94 E-value=0.064 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+..+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.93 E-value=0.087 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 465
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.88 E-value=0.088 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 466
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.83 E-value=0.073 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||||+|||||+++++....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3588999999999999999998665
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.82 E-value=0.089 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-+++.|++|+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 468
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.80 E-value=0.089 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999999874
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.78 E-value=0.072 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
.-+.|.||+|+|||||+++++.....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 35789999999999999999986653
No 470
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.72 E-value=0.11 Score=55.49 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC---CcEEEEe
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS---YDVYDVD 256 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~---~~~~~i~ 256 (480)
.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4588999999999999999998764 4566665
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.69 E-value=0.083 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHc
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
...+++.|++|+|||+|+.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999853
No 472
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.63 E-value=0.094 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+..+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.58 E-value=0.086 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999863
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.58 E-value=0.093 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHHc
Q 011664 227 YLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~ 247 (480)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999975
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.54 E-value=0.2 Score=59.17 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHcC
Q 011664 223 WKRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 223 ~~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
+..-+-++||+|+|||||++++.+..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 33457899999999999999999865
No 476
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.53 E-value=0.12 Score=45.93 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~ 246 (480)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999984
No 477
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.42 E-value=0.1 Score=48.05 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+++.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468888999999999999999864
No 478
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.40 E-value=0.089 Score=46.63 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 479
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.1 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.35 E-value=0.063 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=9.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
..+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 481
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.30 E-value=0.091 Score=47.67 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
.-+++.|+||+|||+|+.++.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.25 E-value=0.12 Score=50.95 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHcCC
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~l~ 249 (480)
.-+.|.||+|+|||||+++++ ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 357899999999999999999 654
No 483
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.24 E-value=0.13 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHhhhhHHhhhC---CCCCceEEEEccCCCcHHHH
Q 011664 185 HPSTFDTISMETDLKNRVKSDLESFLKAKHYYHRLG---RVWKRSYLLYGPSGTGKSSF 240 (480)
Q Consensus 185 ~~~~~~~i~g~~~~k~~l~e~l~~~l~~~~~~~~~g---~~~~rgiLL~GPpGTGKT~L 240 (480)
+..+|+++...+.+.+.+.+.- ...+..+.... ....+.+++.+|+|+|||..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 3467999988888777765421 11111111110 01125699999999999976
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.19 E-value=0.11 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 485
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.18 E-value=0.18 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+.|.|+||+|||||+.++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999864
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.16 E-value=0.12 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCC
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSY 250 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~ 250 (480)
-.+++||.|+|||++..||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999876654
No 487
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.13 E-value=0.82 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-|.+.|++|+|||+|+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999997
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.11 E-value=0.097 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
-.+++.|++|+|||+|+.++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999974
No 489
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.12 Score=47.08 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHc
Q 011664 225 RSYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~~ 247 (480)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 490
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.96 E-value=0.1 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 011664 225 RSYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 225 rgiLL~GPpGTGKT~La~aiA~ 246 (480)
-.+++.|++|+|||+|+.++.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.93 E-value=0.16 Score=47.06 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=23.7
Q ss_pred EEEEccCCCcHHHHHHHHHHcC--CCcEEEE
Q 011664 227 YLLYGPSGTGKSSFAAAMASFM--SYDVYDV 255 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l--~~~~~~i 255 (480)
|.+-|+.|+||||+++.++..+ |.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5688999999999999999977 4555544
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.85 E-value=0.13 Score=46.60 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 493
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.84 E-value=0.2 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+++.||||||||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468999999999999999998754
No 494
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.82 E-value=0.13 Score=46.41 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
-++|.|+||+|||+|+..+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.76 E-value=0.13 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
-+++.|++|+|||+|+..+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999763
No 496
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.68 E-value=0.041 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHcCC
Q 011664 227 YLLYGPSGTGKSSFAAAMASFMS 249 (480)
Q Consensus 227 iLL~GPpGTGKT~La~aiA~~l~ 249 (480)
+.|.||+|+|||+|+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 34679999999999999998764
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.67 E-value=0.13 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHc
Q 011664 226 SYLLYGPSGTGKSSFAAAMASF 247 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~ 247 (480)
.+++.|++|+|||+|+..+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 498
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.61 E-value=0.17 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHcC
Q 011664 224 KRSYLLYGPSGTGKSSFAAAMASFM 248 (480)
Q Consensus 224 ~rgiLL~GPpGTGKT~La~aiA~~l 248 (480)
..-+.+.|+||+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998754
No 499
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.61 E-value=0.13 Score=46.25 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=19.3
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 011664 226 SYLLYGPSGTGKSSFAAAMAS 246 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~ 246 (480)
.+++.|++|+|||+|+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
No 500
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.59 E-value=0.13 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=23.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHcCCCcE
Q 011664 226 SYLLYGPSGTGKSSFAAAMASFMSYDV 252 (480)
Q Consensus 226 giLL~GPpGTGKT~La~aiA~~l~~~~ 252 (480)
-+.|+|++|||||++++.++..+|+++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999999888664
Done!