Query 011665
Match_columns 480
No_of_seqs 141 out of 390
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.6 9.7E-15 3.3E-19 143.1 10.5 233 10-350 18-264 (279)
2 3b84_A Zinc finger and BTB dom 99.5 4.8E-14 1.6E-18 121.8 8.3 108 10-130 10-117 (119)
3 2if5_A Zinc finger and BTB dom 99.5 6.8E-14 2.3E-18 120.3 9.0 109 10-128 11-120 (120)
4 1buo_A POZ domain, protein (pr 99.5 7.2E-14 2.5E-18 120.9 9.0 107 10-130 14-120 (121)
5 2vpk_A Myoneurin; transcriptio 99.5 7E-14 2.4E-18 119.7 8.8 107 10-129 8-116 (116)
6 1r29_A B-cell lymphoma 6 prote 99.5 1.2E-13 4.2E-18 120.0 9.4 110 10-129 15-125 (127)
7 2yy9_A Zinc finger and BTB dom 99.5 5.6E-14 1.9E-18 124.3 7.1 109 10-131 11-119 (135)
8 3ga1_A Nucleus accumbens-assoc 99.5 5.6E-14 1.9E-18 122.8 7.0 108 10-130 19-127 (129)
9 2z8h_A Transcription regulator 99.4 2.8E-13 9.6E-18 119.9 9.9 112 10-132 22-134 (138)
10 2vkp_A BTB/POZ domain-containi 99.4 2E-13 6.8E-18 115.1 8.1 99 21-130 5-108 (109)
11 2ppi_A Gigaxonin; BTB domain, 99.4 2.3E-13 7.9E-18 121.8 8.9 108 10-127 33-143 (144)
12 2q81_A MIZ-1 protein; BTB/POZ 99.4 1.6E-13 5.6E-18 118.5 7.2 105 10-128 13-117 (119)
13 3ohu_A Transcription regulator 99.4 4.7E-13 1.6E-17 116.0 9.7 98 10-112 18-116 (125)
14 3htm_A Speckle-type POZ protei 99.4 6.2E-13 2.1E-17 120.2 10.5 139 10-167 20-162 (172)
15 2ihc_A Transcription regulator 99.4 3.1E-13 1E-17 117.5 6.1 107 10-127 15-122 (124)
16 3hve_A Gigaxonin; ubiquitin, c 99.4 1.3E-12 4.5E-17 126.2 10.8 141 10-169 17-163 (256)
17 4eoz_A Speckle-type POZ protei 99.4 3E-13 1E-17 119.0 5.2 112 10-131 11-123 (145)
18 3fkc_A Transcriptional regulat 99.3 1.4E-12 4.7E-17 112.6 7.8 95 10-112 17-112 (116)
19 3m5b_A Zinc finger and BTB dom 99.3 9E-13 3.1E-17 114.8 6.4 91 21-129 27-117 (119)
20 3hqi_A Speckle-type POZ protei 99.2 2.5E-11 8.5E-16 120.3 9.2 138 11-167 161-302 (312)
21 4ajy_C Transcription elongatio 98.4 4.7E-07 1.6E-11 76.1 6.2 79 27-109 4-96 (97)
22 2ast_A S-phase kinase-associat 98.3 5.1E-07 1.7E-11 82.3 5.1 96 27-132 3-127 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 97.8 2E-05 6.8E-10 70.5 5.7 92 27-131 4-121 (141)
24 2p1m_A SKP1-like protein 1A; F 97.4 2.9E-05 9.8E-10 70.9 0.1 94 26-131 5-125 (160)
25 2fnj_C Transcription elongatio 97.0 0.00071 2.4E-08 56.7 5.2 81 26-110 2-96 (96)
26 1hv2_A Elongin C, ELC1; protei 97.0 0.00088 3E-08 56.5 5.4 82 25-110 4-99 (99)
27 3v7d_A Suppressor of kinetocho 96.5 0.0026 8.9E-08 58.6 5.5 97 25-131 7-133 (169)
28 1vcb_B Protein (elongin C); tu 95.9 0.006 2.1E-07 52.6 4.2 83 24-110 16-112 (112)
29 3drz_A BTB/POZ domain-containi 76.2 12 0.00041 31.2 8.5 94 23-126 3-103 (107)
30 1pd7_B MAD1; PAH2, SIN3, eukar 50.7 5.4 0.00018 25.8 1.0 17 96-112 3-19 (26)
31 1vjh_A BET V I allergen family 47.0 8.7 0.0003 32.8 2.1 33 434-477 90-122 (122)
32 3drx_A BTB/POZ domain-containi 43.0 56 0.0019 30.8 7.2 99 20-128 6-111 (202)
33 3b0b_C CENP-X, centromere prot 27.9 36 0.0012 27.6 2.7 44 371-435 5-48 (81)
34 3ie5_A Phenolic oxidative coup 26.9 20 0.0007 32.3 1.2 17 463-479 148-164 (165)
35 4a8u_A Major pollen allergen B 24.2 25 0.00085 31.4 1.2 17 463-479 142-158 (159)
36 3kvt_A Potassium channel prote 23.3 69 0.0024 27.1 3.8 85 26-114 5-93 (115)
37 2cpg_A REPA protein, transcrip 22.5 64 0.0022 21.9 2.9 35 216-250 7-42 (45)
38 3rws_A MTN13 protein; zeatin, 22.3 27 0.00093 31.6 1.1 17 463-479 148-164 (168)
39 2k9i_A Plasmid PRN1, complete 22.3 90 0.0031 22.0 3.8 35 216-250 14-49 (55)
40 2qim_A PR10.2B; trans-zeatin, 20.6 31 0.0011 30.3 1.2 35 435-477 122-156 (158)
41 3lvg_A Clathrin heavy chain 1; 20.5 33 0.0011 37.2 1.5 34 441-479 335-368 (624)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.55 E-value=9.7e-15 Score=143.07 Aligned_cols=233 Identities=10% Similarity=0.120 Sum_probs=161.1
Q ss_pred hHHHHhhhhhhhccccceEEEEEe---eeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCC----CCCHHHHHH
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQV---TFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDL----PGGPEAFEL 81 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~---~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~----PGGaeaFEl 81 (480)
++..++...-.++.+|||+|+ |+ |..|++||.+| +++|.||++|+.+. .++...+|+|+++ .-.+++|+.
T Consensus 18 ~ll~~l~~l~~~~~~~Dv~l~-v~~~~~~~f~~Hr~vL-aa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ 95 (279)
T 3i3n_A 18 ELSWRQNEQRRQGLFCDITLC-FGGAGGREFRAHRSVL-AAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEA 95 (279)
T ss_dssp HHHHHHHHHHHHTTTCCEEEE-CC----CEEEECHHHH-HHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEE-EcCCCCeEEehHHHHH-HHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHH
Confidence 345666677777889999999 87 99999999976 99999999999876 4556678999866 446799999
Q ss_pred HHHHhcCcceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhccCChHHHHHHHhhhcccchhhhhhc---hH
Q 011665 82 AAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQ---IV 158 (480)
Q Consensus 82 ~akFCYg~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~sCe~Llp~AE~l~---IV 158 (480)
+.+|+|++++.+++.||..+..||.+|+|. .|...++.||.+.+-. . .|-.++.+|+..+ +.
T Consensus 96 ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~c~~~L~~~l~~--~-------n~~~i~~~A~~~~~~~L~ 160 (279)
T 3i3n_A 96 VIEYMYTGRIRVSTGSVHEVLELADRFLLI------RLKEFCGEFLKKKLHL--S-------NCVAIHSLAHMYTLSQLA 160 (279)
T ss_dssp HHHHHHHSEEEEETTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHCCT--T-------THHHHHHHHHHTTCHHHH
T ss_pred HHHhhCcCCcccCHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHcCCc--c-------hHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999997 4889999999886532 2 3444455565543 67
Q ss_pred HHHHHHHHHHHccCCCCccCcccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhcccCChhhHHHHHHHHHHhC--C-
Q 011665 159 RRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKG--M- 235 (480)
Q Consensus 159 ~RCidaLa~ka~~d~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~i~~f~rVi~am~~rg--~- 235 (480)
.+|.+-|...... + +--++...|+.+....++. +.. +
T Consensus 161 ~~~~~~i~~~f~~----v---------------------------------~~~~~f~~L~~~~l~~lL~---~d~L~v~ 200 (279)
T 3i3n_A 161 LKAADMIRRNFHK----V---------------------------------IQDEEFYTLPFHLIRDWLS---DLEITVD 200 (279)
T ss_dssp HHHHHHHHHTHHH----H---------------------------------TTSSGGGGSCHHHHHHHHT---CSSCCCS
T ss_pred HHHHHHHHHHHHH----H---------------------------------hcCcChhcCCHHHHHHHhc---CcCCCCC
Confidence 7787777653211 1 0014556788877776654 332 3
Q ss_pred ChhhHHHHHHHHHHHhhhcccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCcchhhhhhHHHHHHHHHhC
Q 011665 236 RFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISII 315 (480)
Q Consensus 236 ~~~~I~~~l~~Ya~k~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtIV~LL 315 (480)
+.+.|..+++.|++.-.+ ..+..+..+...+
T Consensus 201 sE~~vf~av~~W~~~~~~-------------------------------------------------~r~~~~~~ll~~V 231 (279)
T 3i3n_A 201 SEEVLFETVLKWVQRNAE-------------------------------------------------ERERYFEELFKLL 231 (279)
T ss_dssp CHHHHHHHHHHHHHTTHH-------------------------------------------------HHTTTHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCHH-------------------------------------------------HHHHHHHHHHHhc
Confidence 466777777766653111 1112223333322
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011665 316 PPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR 350 (480)
Q Consensus 316 P~ek~svsc~FLf~LLR~A~~l~as~~cr~~LE~R 350 (480)
- =..+|..+|..+++..-.+..++.|+.-+..-
T Consensus 232 R--f~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea 264 (279)
T 3i3n_A 232 R--LSQMKPTYLTRHVKPERLVANNEVCVKLVADA 264 (279)
T ss_dssp C--GGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred C--CCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence 1 13478999999888877788889998776543
No 2
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=121.82 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=93.4
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
++..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.... ..+|+|++++ +++|+.+.+|+|++
T Consensus 10 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg 82 (119)
T 3b84_A 10 RVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVL-ACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTG 82 (119)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEEeeHHHH-hhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCC
Confidence 355666777778889999999 9999999999976 999999999998753 4678999887 69999999999999
Q ss_pred ceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhh
Q 011665 90 AVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 130 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~ 130 (480)
++++++.|+..+..||++++|. .|....+.||.+.
T Consensus 83 ~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~~ 117 (119)
T 3b84_A 83 HLALTSGNRDQVLLAARELRVP------EAVELCQSFKPKT 117 (119)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCC---
T ss_pred CCccCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHc
Confidence 9999999999999999999997 4888999998763
No 3
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.48 E-value=6.8e-14 Score=120.31 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=93.0
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYg 88 (480)
++.+++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.+. .++...+|+|++++ +++|+.+.+|+|+
T Consensus 11 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vL-aa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt 86 (120)
T 2if5_A 11 DILSGLNEQRTQGLLCDVVIL-VEGREFPTHRSVL-AACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYT 86 (120)
T ss_dssp HHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEE-ECCEEEeHHHHHH-HHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcC
Confidence 345666666677889999999 9999999999976 99999999999876 44556789998876 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhh
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS 128 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~ 128 (480)
+++.+++.|+..+..||++++|.+ |....+.||+
T Consensus 87 ~~~~~~~~~~~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 87 ATLTVSTANVGDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp SCCCCCGGGHHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 999999999999999999999984 8888888874
No 4
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.48 E-value=7.2e-14 Score=120.86 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=95.5
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
++.+++..+-.++.+|||+|+ ++|..|++||.+| +++|.||++++.+. ..+|+|++++ +++|+.+.+|+|++
T Consensus 14 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg 85 (121)
T 1buo_A 14 GLLCKANQMRLAGTLCDVVIM-VDSQEFHAHRTVL-ACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTA 85 (121)
T ss_dssp HHHHHHHHHHHHTTTCCEEEE-ESSCEEEECHHHH-HHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCEEEehhHHHH-hhcCHHHHHHHcCC----CcEEEeCCCC--HHHHHHHHHhhcCC
Confidence 455677777778889999999 9999999999976 99999999999863 4578999987 59999999999999
Q ss_pred ceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhh
Q 011665 90 AVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 130 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~ 130 (480)
++.+++.|+..+..||++++|. .|....+.||.+.
T Consensus 86 ~~~~~~~~~~~ll~~A~~~~i~------~L~~~c~~~l~~~ 120 (121)
T 1buo_A 86 TLQAKAEDLDDLLYAAEILEIE------YLEEQCLKMLETI 120 (121)
T ss_dssp CCCCCGGGHHHHHHHHHHHTCH------HHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHh
Confidence 9999999999999999999997 4888999999875
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=119.74 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=92.2
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEec--CCCCCHHHHHHHHHHhc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLD--DLPGGPEAFELAAKFCY 87 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~--d~PGGaeaFEl~akFCY 87 (480)
++..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.+. ....|.|+ +++ +++|+.+.+|+|
T Consensus 8 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vL-aa~S~yF~~~f~~~---~~~~i~l~~~~~~--~~~f~~ll~~~Y 80 (116)
T 2vpk_A 8 HLLERLNKQREAGFLCDCTIV-IGEFQFKAHRNVL-ASFSEYFGAIYRST---SENNVFLDQSQVK--ADGFQKLLEFIY 80 (116)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHTTC---CCSCEECCTTTCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEE-ECCEEEeccHHHH-hhcCHHHHHHHcCC---CCCeEEeecCCCC--HHHHHHHHHHHc
Confidence 355666677778889999999 9999999999976 99999999999876 24567776 665 599999999999
Q ss_pred CcceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhh
Q 011665 88 GIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY 129 (480)
Q Consensus 88 g~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~ 129 (480)
++++.+++.|+..+..||++++|. .|....+.||.+
T Consensus 81 t~~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~ 116 (116)
T 2vpk_A 81 TGTLNLDSWNVKEIHQAADYLKVE------EVVTKCKIKMED 116 (116)
T ss_dssp HSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHC-
T ss_pred CCCcccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHhC
Confidence 999999999999999999999997 588899998863
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.47 E-value=1.2e-13 Score=119.99 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=96.2
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEe-cCCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVL-DDLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L-~d~PGGaeaFEl~akFCYg 88 (480)
++.+++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+..........|+| ++++ +++|+.+.+|+|+
T Consensus 15 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~iL-aa~S~~F~~~f~~~~~e~~~~i~l~~~~~--~~~f~~ll~~~Yt 90 (127)
T 1r29_A 15 DVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVL-MACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYT 90 (127)
T ss_dssp HHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCEEEehHHHHH-HHhCHHHHHHhcCCccCCCCEEEeCCCCC--HHHHHHHHHHHcC
Confidence 455667777778889999999 9999999999976 999999999999763225678999 7876 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhh
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY 129 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~ 129 (480)
+++.+++.|+..|..||++++|.+ |....+.||.+
T Consensus 91 g~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 91 SRLNLREGNIMAVMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp SCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence 999999999999999999999984 88899999875
No 7
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.46 E-value=5.6e-14 Score=124.26 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=91.5
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
++..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.... ..+|+|++++ +++|+.+.+|+|++
T Consensus 11 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg 83 (135)
T 2yy9_A 11 RVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVL-ACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTG 83 (135)
T ss_dssp HHHHHHHHHHHTTTTCCEEEE-ETTEEEEECHHHH-HHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEehHHHHH-HHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCC
Confidence 355666777778889999999 9999999999976 999999999998753 4578999887 69999999999999
Q ss_pred ceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhc
Q 011665 90 AVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 131 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~v 131 (480)
++++++.|+..|..||++|+|. .|....+.||.+..
T Consensus 84 ~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 84 HLALTSGNRDQVLLAAKELRVP------EAVELCQSFQPQTS 119 (135)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCCC---
T ss_pred CCCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhc
Confidence 9999999999999999999997 47788888877643
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=122.84 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=88.4
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEec-CCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLD-DLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~-d~PGGaeaFEl~akFCYg 88 (480)
++..++..+-.++.+|||+|+ ++|..|++||.+| +++|.||++|+... ...+|+|+ +++ +++|+.+.+|+|+
T Consensus 19 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~vL-aa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYt 91 (129)
T 3ga1_A 19 SILECLNEQRLQGLYCDVSVV-VKGHAFKAHRAVL-AASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYT 91 (129)
T ss_dssp HHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHH-HHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEEehHHHH-HHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhC
Confidence 356667777778889999999 9999999999976 99999999999976 45688886 777 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhh
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 130 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~ 130 (480)
+++++++.|+..+..||++|+|.+ |...++.||.++
T Consensus 92 g~~~i~~~~~~~ll~~A~~~~i~~------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 92 GRLSMNVGDQDLLMYTAGFLQIQE------IMEKGTEFFLKV 127 (129)
T ss_dssp SEEECCTTTHHHHHHHHHHTTBTT------SSCC--------
T ss_pred CccccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence 999999999999999999999985 566778887763
No 9
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.44 E-value=2.8e-13 Score=119.88 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=96.3
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEec-CCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLD-DLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~-d~PGGaeaFEl~akFCYg 88 (480)
++..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.+... +..+|.|+ +++ +++|+.+.+|+|+
T Consensus 22 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~~f~~~~~-e~~~i~l~~~v~--~~~~~~lL~~~Yt 96 (138)
T 2z8h_A 22 NVLLSLNDQRKKDVLCDVTVL-VEGQRFRAHRSVL-AACSSYFHSRIVGQTD-AELTVTLPEEVT--VKGFEPLIQFAYT 96 (138)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHTTCCC-TTEEEECCTTSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcCeEEE-ECCEEEechHHHH-HHcCHHHHHHHhcCCC-CCceEEeCCCCC--HHHHHHHHHHhcC
Confidence 455667777778889999999 9999999999976 9999999999987632 23578884 676 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhcc
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 132 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl 132 (480)
+++.+++.||..+..||++|+|.+ |....+.||.+.+-
T Consensus 97 g~~~i~~~~v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 97 AKLILSKDNVDEVCRCVEFLSVHN------IEESCFQFLKFKFL 134 (138)
T ss_dssp SCCCCCTTTHHHHHHHHHHHTCGG------GHHHHHHHTTCCCS
T ss_pred CCcccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHhcc
Confidence 999999999999999999999984 88999999987553
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=115.11 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred hccccceEEEEEee----eEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCCCCCHHHHHHHHHHhcCcceecCc
Q 011665 21 EANLGMLLLIFQVT----FLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTA 95 (480)
Q Consensus 21 ~~~l~~v~li~~~~----~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYg~~i~it~ 95 (480)
++.+|||+|+ +++ ..|++||.+| +++|.||++|+.+. .++. .+|.|++++ +++|+.+.+|+|++++.+++
T Consensus 5 ~~~~~Dv~l~-v~~~~~~~~~~~Hk~iL-a~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~~ 79 (109)
T 2vkp_A 5 NELMADVHFV-VGPPGATRTVPAHKYVL-AVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLEA 79 (109)
T ss_dssp CCTTCCEEEE-ESSTTSCEEEEECHHHH-HHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCCT
T ss_pred CCCcccEEEE-ECCCCCcEEEEeeHHHH-HHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCCH
Confidence 4569999999 888 8999999976 99999999999976 3344 789998886 59999999999999999999
Q ss_pred ChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhh
Q 011665 96 SNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 130 (480)
Q Consensus 96 ~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~ 130 (480)
.|+..+..+|++++|. .|...++.||.+.
T Consensus 80 ~~~~~ll~~A~~~~~~------~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVP------ALAKACVNFLETS 108 (109)
T ss_dssp TTHHHHHHHHHHTTCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcH------HHHHHHHHHHHhh
Confidence 9999999999999998 4888999998763
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=121.84 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=91.6
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccC---CCCcceEEecCCCCCHHHHHHHHHHh
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESR---DSELNKIVLDDLPGGPEAFELAAKFC 86 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~---~~~~~~i~L~d~PGGaeaFEl~akFC 86 (480)
.|...+..+-.++.+|||+|+ ++|..|++||.+| +++|.||++|+...- ++...+|.|++++ +++|+.+.+|+
T Consensus 33 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fi 108 (144)
T 2ppi_A 33 RLLRALSSFREESRFCDAHLV-LDGEEIPVQKNIL-AAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYI 108 (144)
T ss_dssp HHHHHHHHTTC--CCCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEehHHHHH-HHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHH
Confidence 355667777778889999999 9999999999976 999999999998652 2456789999887 59999999999
Q ss_pred cCcceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHh
Q 011665 87 YGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFL 127 (480)
Q Consensus 87 Yg~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL 127 (480)
|++++.+++.|+..|..||++++|.+ |...++.||
T Consensus 109 Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~L 143 (144)
T 2ppi_A 109 FSGQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFL 143 (144)
T ss_dssp TTSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHh
Confidence 99999999999999999999999974 777888776
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.43 E-value=1.6e-13 Score=118.45 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=91.1
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
.+.+++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.+. ...|.|++++ +++|+.+.+|+|++
T Consensus 13 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vL-aa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg 84 (119)
T 2q81_A 13 HVLEQLNQQRQLGLLCDCTFV-VDGVHFKAHKAVL-AACSEYFKMLFVDQ----KDVVHLDISN--AAGLGQVLEFMYTA 84 (119)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHHHC----CSGGGGGGCC--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEehhHHHH-HHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHHHcCC
Confidence 355667777778889999999 9999999999976 99999999999873 2356676664 69999999999999
Q ss_pred ceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhh
Q 011665 90 AVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS 128 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~ 128 (480)
++.+++.|+..+..||++|+|.+ |....+.||.
T Consensus 85 ~~~i~~~~~~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 85 KLSLSPENVDDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 99999999999999999999984 8888888875
No 13
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.42 E-value=4.7e-13 Score=116.03 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=86.2
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecC-CCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDD-LPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d-~PGGaeaFEl~akFCYg 88 (480)
++..++..+-.++.+|||+|+ ++|..|++||.+| +++|.||++++..... +..+|.|++ ++ +++|+.+.+|+|+
T Consensus 18 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~~f~~~~~-e~~~i~l~~~~~--~~~f~~~l~~iYt 92 (125)
T 3ohu_A 18 NILLGLNDQRKKDILCDVTLI-VERKEFRAHRAVL-AACSEYFWQALVGQTK-NDLVVSLPEEVT--ARGFGPLLQFAYT 92 (125)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHBHHHHHHHTTCCC-SSCEEECCTTCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCccceEEE-ECCEEEechHHHH-HHcCHHHHHHhcCCCC-CCcEEEeCCCCC--HHHHHHHHHhHcC
Confidence 455667777778889999999 9999999999976 9999999999987632 256788877 66 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcc
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTE 112 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte 112 (480)
+++.+++.|+..+..||++|+|.+
T Consensus 93 g~~~~~~~~v~~ll~~A~~l~i~~ 116 (125)
T 3ohu_A 93 AKLLLSRENIREVIRCAEFLRMHN 116 (125)
T ss_dssp SEEEECTTTHHHHHHHHHHHTBSS
T ss_pred CceEECHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999985
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.42 E-value=6.2e-13 Score=120.16 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=112.5
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYg 88 (480)
.|...+..+-.++..|||+|+ ++|..|++||.+| +++|.||++|+... .++...+|.|++++ +++|+.+.+|+|+
T Consensus 20 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~iL-~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt 95 (172)
T 3htm_A 20 RLADELGGLWENSRFTDCCLC-VAGQEFQAHKAIL-AARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYT 95 (172)
T ss_dssp CHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEE-ECCEEEEeeHHHH-HHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhC
Confidence 356667777778889999999 9999999999976 99999999999975 45556789999886 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhccCChHHHHHHHhhhcccchhhhhh---chHHHHHHHH
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENL---QIVRRCSESI 165 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~sCe~Llp~AE~l---~IV~RCidaL 165 (480)
+++.+++.|+..+..+|++++|. .|...++.||.+.+ +-...+.+ +.+|+.. .|..+|++-|
T Consensus 96 ~~~~~~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~l--~~~n~~~~-------~~~A~~~~~~~L~~~~~~~i 160 (172)
T 3htm_A 96 GKAPNLDKMADDLLAAADKYALE------RLKVMCEDALCSNL--SVENAAEI-------LILADLHSADQLKTQAVDFI 160 (172)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCH------HHHHHHHHHHHHTC--CTTTHHHH-------HHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhC--CHHHHHHH-------HHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999999997 48899999999754 22333333 3344442 4667777777
Q ss_pred HH
Q 011665 166 AW 167 (480)
Q Consensus 166 a~ 167 (480)
+.
T Consensus 161 ~~ 162 (172)
T 3htm_A 161 NY 162 (172)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 15
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.38 E-value=3.1e-13 Score=117.54 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=88.8
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEe-cCCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVL-DDLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L-~d~PGGaeaFEl~akFCYg 88 (480)
++..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+.+... +..++.| .+++ +++|+.+.+|+|+
T Consensus 15 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vL-aa~S~yF~~mf~~~~~-e~~~i~l~~~v~--~~~f~~lL~~iYt 89 (124)
T 2ihc_A 15 NVLLSLNDQRKKDVLCDVTIF-VEGQRFRAHRSVL-AACSSYFHSRIVGQAD-GELNITLPEEVT--VKGFEPLIQFAYT 89 (124)
T ss_dssp HHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHBHHHHHHHTTC----CEEEECCTTSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCEEEE-ECCEEEecHHHHH-HHcCHHHHHHHcCCCC-CCceEeecCCcC--HHHHHHHHHHhcC
Confidence 455667777778889999999 9999999999976 9999999999987632 2357788 4665 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHh
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFL 127 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL 127 (480)
+++.+++.||..+..||++++|.+ |....+.||
T Consensus 90 g~~~i~~~~v~~ll~~A~~~~~~~------L~~~C~~~l 122 (124)
T 2ihc_A 90 AKLILSKENVDEVCKCVEFLSVHN------IEESCFQFL 122 (124)
T ss_dssp SEEEEETTTHHHHHHHHHHHTBSS------CCGGGGGTC
T ss_pred CCcccCHHHHHHHHHHHHHHCCHH------HHHHHHHHH
Confidence 999999999999999999999985 445555555
No 16
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.38 E-value=1.3e-12 Score=126.19 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=106.4
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhccc-C--CCCcceEEecCCCCCHHHHHHHHHHh
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES-R--DSELNKIVLDDLPGGPEAFELAAKFC 86 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~-~--~~~~~~i~L~d~PGGaeaFEl~akFC 86 (480)
.+..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++|+... . ++...+|.|++++ +++|+.+.+|+
T Consensus 17 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~~Hr~vL-aa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~ 92 (256)
T 3hve_A 17 RLLRALSSFREESRFCDAHLV-LDGEEIPVQKNIL-AAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYI 92 (256)
T ss_dssp HHHHHHHTCCC--CCCCEEEE-ETTEEEEECHHHH-HTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEE-ECCEEEechHHHH-HHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhc
Confidence 345666677777789999999 9999999999976 99999999999865 2 3456789999986 59999999999
Q ss_pred cCcceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhccCChHHHHHHHhhhcccchhhhhh---chHHHHHH
Q 011665 87 YGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENL---QIVRRCSE 163 (480)
Q Consensus 87 Yg~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~sCe~Llp~AE~l---~IV~RCid 163 (480)
|++++++++.|+..+..||.+|+|.+ |....+.||.+.+-. .. |-.++.+|+.. .+...|.+
T Consensus 93 Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~--~n-------~~~i~~~A~~~~~~~L~~~~~~ 157 (256)
T 3hve_A 93 FSGQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA--EN-------CIGIRDFALHYCLHHVHYLATE 157 (256)
T ss_dssp HHSCCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS--ST-------THHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH--hh-------HHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999999984 888999999986533 23 33344445543 36677877
Q ss_pred HHHHHH
Q 011665 164 SIAWKA 169 (480)
Q Consensus 164 aLa~ka 169 (480)
-|+...
T Consensus 158 ~i~~~f 163 (256)
T 3hve_A 158 YLETHF 163 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=119.01 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=93.4
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCCCCCHHHHHHHHHHhcC
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYG 88 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYg 88 (480)
.|...+..+-.++..|||+|+ ++|..|++||.+| +++|.||++++.+. .++...+|.|++++ +++|+.+.+|+|+
T Consensus 11 ~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~iL-~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 11 RLADELGGLWENSRFTDCCLC-VAGQEFQAHKAIL-AARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYT 86 (145)
T ss_dssp CHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEE-ECCEEEEeehHHH-HHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhcc
Confidence 355666677677889999999 9999999999976 99999999999865 33345689999886 5999999999999
Q ss_pred cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhc
Q 011665 89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 131 (480)
Q Consensus 89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~v 131 (480)
+++.+++.|+..+..+|++++|.+ |...++.||.+.+
T Consensus 87 ~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l 123 (145)
T 4eoz_A 87 GKAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNL 123 (145)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHCC-----
T ss_pred CccCCcHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHhC
Confidence 999999999999999999999974 8889999998654
No 18
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.35 E-value=1.4e-12 Score=112.57 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=84.3
Q ss_pred hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
.+..++...-.++.+|||+|+ ++|..|++||.+| +++|.||++++... ..+|+|++++ +++|+.+.+|+|++
T Consensus 17 ~l~~~l~~~~~~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg 88 (116)
T 3fkc_A 17 SLLNSLNEQRGHGLFCDVTVI-VEDRKFRAHKNIL-SASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSS 88 (116)
T ss_dssp HHHHHHHHHHHHTTTCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCceeEEEE-ECCEEEehhHHHH-HHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCC
Confidence 355566666678889999999 9999999999976 99999999999875 4588999887 59999999999999
Q ss_pred ce-ecCcChHHHHHHhHHHhcCcc
Q 011665 90 AV-DLTASNISGLRCAAEYLEMTE 112 (480)
Q Consensus 90 ~i-~it~~NVa~LrCAAe~LeMte 112 (480)
++ ++++.|+..+..||++|+|..
T Consensus 89 ~~~~~~~~~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 89 KIVRVRSDLLDELIKSGQLLGVKF 112 (116)
T ss_dssp CCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred CcCCCCHHHHHHHHHHHHHhCccc
Confidence 99 799999999999999999974
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.34 E-value=9e-13 Score=114.77 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=79.5
Q ss_pred hccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCcceecCcChHHH
Q 011665 21 EANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISG 100 (480)
Q Consensus 21 ~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~~i~it~~NVa~ 100 (480)
++.+|||+|+ ++|..|++||.+| +++|.||+. ...+|+|++++ +++|+.+.+|+|+++++|+..||..
T Consensus 27 ~~~~~Dv~l~-v~~~~f~aHk~vL-aa~S~yF~~--------~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 27 RPALCDTLIT-VGSQEFPAHSLVL-AGVSQQLGR--------RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp TTTTCCEEEE-ETTEEEEECHHHH-HTTCGGGCC--------CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred cCCCcceEEE-ECCEEEeeEHHHH-HHcCHHHhc--------CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 4679999999 9999999999986 999999984 23578889987 5999999999999999999999999
Q ss_pred HHHhHHHhcCcccccCCChHHHHHHHhhh
Q 011665 101 LRCAAEYLEMTEDLEEGNLIFKTEAFLSY 129 (480)
Q Consensus 101 LrCAAe~LeMte~~~~gNLi~ktE~fL~~ 129 (480)
+..||++|+|. .|....+.++.+
T Consensus 95 ll~aA~~l~i~------~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQ------SLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCH------HHHHHHHHHC--
T ss_pred HHHHHHHhCCH------HHHHHHHHHHhh
Confidence 99999999998 477788877764
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.21 E-value=2.5e-11 Score=120.33 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=110.4
Q ss_pred HHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCCCCCHHHHHHHHHHhcCc
Q 011665 11 LVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGI 89 (480)
Q Consensus 11 ~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYg~ 89 (480)
|...+..+--++..|||+|+ ++|..|.+||.+| +++|.||++|+.+. .++...+|+|+|++ +++|+...+|+|+.
T Consensus 161 l~~~l~~l~~~~~~~Dv~l~-v~~~~f~~Hk~vL-aa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 161 LADELGGLWENSRFTDCCLC-VAGQEFQAHKAIL-AARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTG 236 (312)
T ss_dssp HHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCceEEE-ECCEEEeHHHHHH-HHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCC
Confidence 44555555556779999999 9999999999975 99999999999875 45566799999986 59999999999999
Q ss_pred ceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhccCChHHHHHHHhhhcccchhhhhh---chHHHHHHHHH
Q 011665 90 AVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENL---QIVRRCSESIA 166 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~sCe~Llp~AE~l---~IV~RCidaLa 166 (480)
++.++..|+..|..||++++|. .|...+|.||.+.+-. .+|-.++.+|+.. .|..+|++-|+
T Consensus 237 ~~~~~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~ 301 (312)
T 3hqi_A 237 KAPNLDKMADDLLAAADKYALE------RLKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFIN 301 (312)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhCHH------HHHHHHHHHHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999997 5899999999875421 2334445556653 57788888887
Q ss_pred H
Q 011665 167 W 167 (480)
Q Consensus 167 ~ 167 (480)
.
T Consensus 302 ~ 302 (312)
T 3hqi_A 302 Y 302 (312)
T ss_dssp H
T ss_pred H
Confidence 6
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.36 E-value=4.7e-07 Score=76.07 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=65.1
Q ss_pred eEEEEEeeeEEeccchhhhccchHHHHHHhccc---CCCCcceEEecCCCCCHHHHHHHHHHhc-----C---ccee---
Q 011665 27 LLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES---RDSELNKIVLDDLPGGPEAFELAAKFCY-----G---IAVD--- 92 (480)
Q Consensus 27 v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~---~~~~~~~i~L~d~PGGaeaFEl~akFCY-----g---~~i~--- 92 (480)
|.|+--+|..|..|+.+ +..|++||.|+.+. .+.....|.|++++| .+++++..||| + ..+.
T Consensus 4 v~L~SsDg~~F~v~r~v--A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~--~iL~kViey~~~h~~~~~~~~~i~~~~ 79 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH--ALTSGTIKAMLSGPGQFAENETNEVNFREIPS--HVLSKVCMYFTYKVRYTNSSTEIPEFP 79 (97)
T ss_dssp EEEECTTCCEEEEEHHH--HTTSHHHHHHHCCC--------CEEECTTSCH--HHHHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEEEecCCcEEEecHHH--HHHhHHHHHHHHhCCCccccCCCceECCCCCH--HHHHHHHHHHHHhcccCCCcCCCCcCc
Confidence 55665689999999985 89999999999873 233456899999987 99999999999 4 5666
Q ss_pred cCcChHHHHHHhHHHhc
Q 011665 93 LTASNISGLRCAAEYLE 109 (480)
Q Consensus 93 it~~NVa~LrCAAe~Le 109 (480)
|++.|+--|..||.||+
T Consensus 80 i~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 80 IAPEIALELLMAANFLD 96 (97)
T ss_dssp CCGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhhC
Confidence 99999999999999997
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.29 E-value=5.1e-07 Score=82.32 Aligned_cols=96 Identities=14% Similarity=0.231 Sum_probs=78.9
Q ss_pred eEEEEEeeeEEeccchhhhccchHHHHHHhccc--C-CCCcceEEecCCCCCHHHHHHHHHHhcCcc-------------
Q 011665 27 LLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYES--R-DSELNKIVLDDLPGGPEAFELAAKFCYGIA------------- 90 (480)
Q Consensus 27 v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~--~-~~~~~~i~L~d~PGGaeaFEl~akFCYg~~------------- 90 (480)
|+|+-.+|..|..|+.+ ++.|+||+.|+... . +.....|.|+++++ .+++.+..|||..+
T Consensus 3 v~L~ssDg~~f~v~~~v--A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~--~iL~kViey~~~h~~~~~~~~~~~~~~ 78 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI--AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNA--AILKKVIQWCTHHKDDPPPPEDDENKE 78 (159)
T ss_dssp EEEECTTSCEEEEEHHH--HHTCHHHHHHTTSSCSS------CEECTTSCH--HHHHHHHHHHHHTTTCCC---------
T ss_pred EEEEcCCCCEEEeCHHH--HHHhHHHHHHHHhcCCcccccCCCcCCCCccH--HHHHHHHHHHHHcCcCCCCcccccccc
Confidence 67775689999999985 79999999999873 2 34446899999988 99999999999654
Q ss_pred -------------eecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhcc
Q 011665 91 -------------VDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 132 (480)
Q Consensus 91 -------------i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl 132 (480)
+.++..|+.-|..||.||+|. .|+.-+-.|+...+-
T Consensus 79 ~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~------~Lld~~c~~va~~i~ 127 (159)
T 2ast_A 79 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMIK 127 (159)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHc
Confidence 789999999999999999997 488888888877653
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.81 E-value=2e-05 Score=70.55 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=77.6
Q ss_pred eEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCcc----------------
Q 011665 27 LLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIA---------------- 90 (480)
Q Consensus 27 v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~~---------------- 90 (480)
|.|+-.+|..|..|+.+ +..|++|+.|+.... ...|.|++++| .+++.+..|||--+
T Consensus 4 v~L~SsDg~~f~v~~~v--A~~S~~ik~ml~~~~---~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI--AKQSVTIKTMLEDLG---MDPVPLPNVNA--AILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG--GGTCHHHHHHHHHTC---CSSEECTTCCH--HHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH--HHHhHHHHHHHHhcC---CCceecCCcCH--HHHHHHHHHHHHhccCCCccccccccccch
Confidence 66776688999999984 799999999998742 34799999998 99999999999432
Q ss_pred ----------eecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhc
Q 011665 91 ----------VDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 131 (480)
Q Consensus 91 ----------i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~v 131 (480)
+.++..++--|-.||.||++. .|+.-+-.|+...+
T Consensus 77 ~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~i 121 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMI 121 (141)
T ss_dssp ----HHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHH
Confidence 679999999999999999997 47777777777655
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.35 E-value=2.9e-05 Score=70.94 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=48.8
Q ss_pred ceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCcc---------------
Q 011665 26 MLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIA--------------- 90 (480)
Q Consensus 26 ~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~~--------------- 90 (480)
.|.|+--+|..|..|+.+ +..|++|+.|+.... ....|.|++++| .+++.+..|||-.+
T Consensus 5 ~v~L~SsDg~~f~v~~~v--A~~S~~ik~ml~~~~--~~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV--ALESQTIAHMVEDDC--VDNGVPLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH--HHTCTTTC--------------CCTTSCH--HHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH--HHHhHHHHHHHHccC--CCCceeCCcCcH--HHHHHHHHHHHHcccCCCccccccccccc
Confidence 466665689999999985 789999999998652 234788899998 99999999999643
Q ss_pred ------------eecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhc
Q 011665 91 ------------VDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 131 (480)
Q Consensus 91 ------------i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~v 131 (480)
+.++..++--|..||.||+|. .|+.-+-.|+...+
T Consensus 79 ~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~i 125 (160)
T 2p1m_A 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIK------NLLDLTCQTVADMI 125 (160)
T ss_dssp ----------------------CHHHHHHTTCH------HHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHH
Confidence 578999999999999999997 48888888888766
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.01 E-value=0.00071 Score=56.72 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=64.3
Q ss_pred ceEEEEEeeeEEeccchhhhccchHHHHHHhcccC---CCCcceEEecCCCCCHHHHHHHHHHhcCc-----------ce
Q 011665 26 MLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESR---DSELNKIVLDDLPGGPEAFELAAKFCYGI-----------AV 91 (480)
Q Consensus 26 ~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYg~-----------~i 91 (480)
.+.|+--+|..|..++-+ +..|++|+.|+.... +.....|.|++++| .+++.+..|||-- ..
T Consensus 2 ~v~L~SsDg~~f~V~~~~--A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~i~~w 77 (96)
T 2fnj_C 2 YVKLISSDGHEFIVKREH--ALTSGTIKAMLSGPGQFAENETNEVNFREIPS--HVLSKVCMYFTYKVRYTNSSTEIPEF 77 (96)
T ss_dssp EEEEECTTSCEEEEEHHH--HTTSHHHHHHHHCC--------CEEECSSCCH--HHHHHHHHHHHHHHHHHSCCSCCCCC
T ss_pred eEEEEecCCCEEEeCHHH--HHHhHHHHHHHHccCCcccccCCceeCCCCCH--HHHHHHHHHHHHccccCCCcccCCCc
Confidence 466776689999999974 789999999998642 23345899999998 9999999999832 14
Q ss_pred ecCcChHHHHHHhHHHhcC
Q 011665 92 DLTASNISGLRCAAEYLEM 110 (480)
Q Consensus 92 ~it~~NVa~LrCAAe~LeM 110 (480)
.+.+..+--|--||.||++
T Consensus 78 ~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 78 PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCCTTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCc
Confidence 6888999999999999975
No 26
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=96.97 E-value=0.00088 Score=56.51 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=66.2
Q ss_pred cceEEEEEeeeEEeccchhhhccchHHHHHHhcccCCCCcceEEecCCCCCHHHHHHHHHHhcCc--------------c
Q 011665 25 GMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGI--------------A 90 (480)
Q Consensus 25 ~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYg~--------------~ 90 (480)
..+.|+--+|..|..++-+ +..|++||.|+...-+.+...|.|++++| .+++.+..|||-- .
T Consensus 4 ~~v~L~SsDg~~f~V~~~v--A~~S~~ik~ml~~~~e~~~~~Iplp~V~~--~iL~kVieyc~~h~~~~~~~~~~~~i~~ 79 (99)
T 1hv2_A 4 DFVTLVSKDDKEYEISRSA--AMISPTLKAMIEGPFRESKGRIELKQFDS--HILEKAVEYLNYNLKYSGVSEDDDEIPE 79 (99)
T ss_dssp SEEEEEETTTEEEEEEHHH--HTTCHHHHHHHHSSTTTCTTEEEETTSCH--HHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred cEEEEEecCCCEEEECHHH--HHHhHHHHHHHhcccccCCCceecCCcCH--HHHHHHHHHHHHhcccCCCccccccCCC
Confidence 3577886799999999974 88999999999873223335899999998 9999999999831 1
Q ss_pred eecCcChHHHHHHhHHHhcC
Q 011665 91 VDLTASNISGLRCAAEYLEM 110 (480)
Q Consensus 91 i~it~~NVa~LrCAAe~LeM 110 (480)
..+.+..+--|--||.||++
T Consensus 80 w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 80 FEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHhCc
Confidence 35777888889999999974
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=96.52 E-value=0.0026 Score=58.59 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=72.2
Q ss_pred cceEEEEEeeeEEeccchhhhccchHHHHHHhcccCC-----CCcceEEecCCCCCHHHHHHHHHHhcCcc---------
Q 011665 25 GMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRD-----SELNKIVLDDLPGGPEAFELAAKFCYGIA--------- 90 (480)
Q Consensus 25 ~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~-----~~~~~i~L~d~PGGaeaFEl~akFCYg~~--------- 90 (480)
+.+.|+--+|..|..++-+ +..|+.|+.|+..... .+...|.|++++| .+++.+..|||--+
T Consensus 7 ~~i~L~SsDG~~F~V~~~v--A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s--~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKI--AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRS--SVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp CEEEEECTTCCEEEEEHHH--HTTSHHHHHHHHC-----------CEEECTTCCH--HHHHHHHHHHHHTTTCCCCC---
T ss_pred CeEEEEeCCCCEEEecHHH--HHHhHHHHHHHHhcCcccccccCCCceeeCCCCH--HHHHHHHHHHHHcccCCCccccc
Confidence 4677887889999999985 7899999999986532 2236789999998 99999999997311
Q ss_pred ----------------eecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhc
Q 011665 91 ----------------VDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 131 (480)
Q Consensus 91 ----------------i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~v 131 (480)
+.+.+..+--|-.||.||+|. .|+.-|=.++...+
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk------~Lldl~c~~vA~~i 133 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIK------PLLDAGCKVVAEMI 133 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHH
Confidence 356777888899999999997 35555555554433
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=95.89 E-value=0.006 Score=52.65 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=64.8
Q ss_pred ccceEEEEEeeeEEeccchhhhccchHHHHHHhcccC---CCCcceEEecCCCCCHHHHHHHHHHhcCc-----------
Q 011665 24 LGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESR---DSELNKIVLDDLPGGPEAFELAAKFCYGI----------- 89 (480)
Q Consensus 24 l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYg~----------- 89 (480)
-..|.|+--+|+.|..++-+ +..|+.|+.|+.... +.....|-|+++++ .+++.+..|||--
T Consensus 16 ~~~v~L~SsDG~~F~V~~~~--A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s--~iL~kVieyc~~h~~~~~~~~~i~ 91 (112)
T 1vcb_B 16 AMYVKLISSDGHEFIVKREH--ALTSGTIKAMLSGPGQFAENETNEVNFREIPS--HVLSKVCMYFTYKVRYTNSSTEIP 91 (112)
T ss_dssp -CEEEEECTTSCEEEEEHHH--HHTSHHHHHHSSCC--------CEEECSSCCH--HHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred CCEEEEEcCCCCEEEECHHH--HHHhHHHHHHHHhcCCcccccCCceeCCCCCH--HHHHHHHHHHHHhhhccCCcCCCC
Confidence 35677777889999999874 789999999998642 22335789999998 9999999999731
Q ss_pred ceecCcChHHHHHHhHHHhcC
Q 011665 90 AVDLTASNISGLRCAAEYLEM 110 (480)
Q Consensus 90 ~i~it~~NVa~LrCAAe~LeM 110 (480)
.+.+.+..+--|--||.||++
T Consensus 92 ~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 92 EFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCCCCHHHHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHhCc
Confidence 146788889999999999975
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=76.22 E-value=12 Score=31.24 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=62.5
Q ss_pred cccceEEEEEeeeEEeccchhhhccch-HHHHHHhcccCC-----CCcceEEecCCCCCHHHHHHHHHHhcCcceecCcC
Q 011665 23 NLGMLLLIFQVTFLFKLEMLIFTYTRS-GKMNRLIYESRD-----SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTAS 96 (480)
Q Consensus 23 ~l~~v~li~~~~~~f~~h~~~lL~s~S-g~l~rl~~~~~~-----~~~~~i~L~d~PGGaeaFEl~akFCYg~~i~it~~ 96 (480)
+-.++|-++|+|..|...+-.| .... .+|.+|+..... .+..++-| | --|+.|+.+..|-.++++.+.+.
T Consensus 3 ~~~~~v~LNVGG~~f~t~~~TL-~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-D--Rdp~~F~~IL~~lr~g~l~~p~~ 78 (107)
T 3drz_A 3 SVSKWVRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLI-D--RDPTYFGPVLNYLRHGKLVINKD 78 (107)
T ss_dssp --CCEEEEEETTEEEEEEHHHH-TSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-C--SCHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCCEEEEEECCEEEEECHHHH-hcCCCcchhHHHhcCCCCCcCCCCCceEEe-c--CChHHHHHHHHHhCCCeeCCCCC
Confidence 3445666679999999998764 4443 578899875311 12234433 4 45699999999999888776332
Q ss_pred -hHHHHHHhHHHhcCcccccCCChHHHHHHH
Q 011665 97 -NISGLRCAAEYLEMTEDLEEGNLIFKTEAF 126 (480)
Q Consensus 97 -NVa~LrCAAe~LeMte~~~~gNLi~ktE~f 126 (480)
....+...|+|.++++ |+...+.-
T Consensus 79 ~~~~~l~~Ea~fy~l~~------L~~~l~~~ 103 (107)
T 3drz_A 79 LAEEGVLEEAEFYNITS------LIKLVKDK 103 (107)
T ss_dssp SCHHHHHHHHHHHTCHH------HHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHH------HHHHHHHH
Confidence 3467888999999874 55555443
No 30
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=50.71 E-value=5.4 Score=25.80 Aligned_cols=17 Identities=53% Similarity=0.520 Sum_probs=14.5
Q ss_pred ChHHHHHHhHHHhcCcc
Q 011665 96 SNISGLRCAAEYLEMTE 112 (480)
Q Consensus 96 ~NVa~LrCAAe~LeMte 112 (480)
.||..|.-||+|||=.|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 49999999999998544
No 31
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=47.03 E-value=8.7 Score=32.81 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=25.7
Q ss_pred hccCCCCCChhHHHHHHHhcCCCcccCCCChhHHHHHhhhccCC
Q 011665 434 EVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISN 477 (480)
Q Consensus 434 EVA~D~nL~~sKF~~Lae~lPd~AR~~hDgLYRAIDiYLKaHp~ 477 (480)
|...|.+.+|.+..+.+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 55677888888887766 5779999999999984
No 32
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=43.00 E-value=56 Score=30.76 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=64.0
Q ss_pred hhccccceEEEEEeeeEEeccchhhhccc-hHHHHHHhcccCC-----CCcceEEecCCCCCHHHHHHHHHHhcCcceec
Q 011665 20 LEANLGMLLLIFQVTFLFKLEMLIFTYTR-SGKMNRLIYESRD-----SELNKIVLDDLPGGPEAFELAAKFCYGIAVDL 93 (480)
Q Consensus 20 ~~~~l~~v~li~~~~~~f~~h~~~lL~s~-Sg~l~rl~~~~~~-----~~~~~i~L~d~PGGaeaFEl~akFCYg~~i~i 93 (480)
..++..+.|-++|+|..|...+-.| ... -.+|.+|+..... .+..++-| |- -|+.|+.+-.|--++++.+
T Consensus 6 ~~g~~~~~V~LNVGG~~F~Tt~sTL-~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DR--DP~~F~~ILnyLRtG~L~l 81 (202)
T 3drx_A 6 RPGSVSKWVRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVI 81 (202)
T ss_dssp CSSCCCCEEEEEETTEEEEEETTGG-GSCTTSSTHHHHSCCCC----BCTTCCEEE-CS--CSTTHHHHHHHHHHSCCCC
T ss_pred CCCCCCCEEEEEECCEEEEEeHHHH-hCCCcchHHHHhcCccccCcccCCCccEEe-cC--ChHHHHHHHHHhcCCccCC
Confidence 4556778888889999998887754 333 2578888765311 12223433 44 3499999999998888765
Q ss_pred CcC-hHHHHHHhHHHhcCcccccCCChHHHHHHHhh
Q 011665 94 TAS-NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS 128 (480)
Q Consensus 94 t~~-NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~ 128 (480)
.+. ....+.--|+|.++.+ |+...+.-+.
T Consensus 82 P~~~~~~~l~eEA~FygL~~------Lv~~l~~~i~ 111 (202)
T 3drx_A 82 NKDLAEEGVLEEAEFYNITS------LIKLVKDKIR 111 (202)
T ss_dssp CTTSCHHHHHHHHHHTTCHH------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCcHH------HHHHHHHHHH
Confidence 322 2345777888888864 5555544443
No 33
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=27.90 E-value=36 Score=27.59 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCcccchHHHHHHHHHHHhcccccCCCCCccccccccccccccCCCCchhHHHHHHhhhhhhhhc
Q 011665 371 GETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEV 435 (480)
Q Consensus 371 ~~tlYDVDlV~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVakLvD~YLaEV 435 (480)
++..++-+++.||+..+...... .-+..++.-+++++|-|..|.
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~kt---------------------rI~~dAl~l~aeyl~iFV~EA 48 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRT---------------------RVNGDALLLMAELLKVFVREA 48 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTC---------------------EECHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcc---------------------cccHHHHHHHHHHHHHHHHHH
Confidence 35578899999999986543221 124567899999999999883
No 34
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=26.91 E-value=20 Score=32.31 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.0
Q ss_pred ChhHHHHHhhhccCCCC
Q 011665 463 GLYRAIDSYLKVISNFC 479 (480)
Q Consensus 463 gLYRAIDiYLKaHp~L~ 479 (480)
+++++||-||-+||..|
T Consensus 148 ~~~K~ie~yllanp~~~ 164 (165)
T 3ie5_A 148 EFYKQVEEYLAANPEVF 164 (165)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhChhhh
Confidence 57999999999999875
No 35
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=24.21 E-value=25 Score=31.36 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=14.8
Q ss_pred ChhHHHHHhhhccCCCC
Q 011665 463 GLYRAIDSYLKVISNFC 479 (480)
Q Consensus 463 gLYRAIDiYLKaHp~L~ 479 (480)
+++++||-||-+||..|
T Consensus 142 ~~~k~ie~yll~np~~~ 158 (159)
T 4a8u_A 142 TLLRAVESYLLAHSDAY 158 (159)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHhhChhhh
Confidence 68999999999999875
No 36
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=23.28 E-value=69 Score=27.14 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=54.7
Q ss_pred ceEEEEEeeeEEeccchhhhccc-hHHHHHHhcccC--CCCcceEEecCCCCCHHHHHHHHHHhcCcceecCc-ChHHHH
Q 011665 26 MLLLIFQVTFLFKLEMLIFTYTR-SGKMNRLIYESR--DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTA-SNISGL 101 (480)
Q Consensus 26 ~v~li~~~~~~f~~h~~~lL~s~-Sg~l~rl~~~~~--~~~~~~i~L~d~PGGaeaFEl~akFCYg~~i~it~-~NVa~L 101 (480)
+.|-++|+|..|...+--| ... -..|.+|+.... +.+..++-| |= -|+.|..+-.|--++++.+.+ -.+..+
T Consensus 5 ~~V~LNVGG~~f~T~~~TL-~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DR--dp~~F~~ILnylR~G~l~~p~~~~~~~~ 80 (115)
T 3kvt_A 5 NRVIINVGGIRHETYKATL-KKIPATRLSRLTEGMLNYDPVLNEYFF-DR--HPGVFAQIINYYRSGKLHYPTDVCGPLF 80 (115)
T ss_dssp CEEEEEETTEEEEEEHHHH-TTSCSSTTTTCCTTSTTEETTTTEEEE-CS--CTTTHHHHHHHHHHSCBCCCSSSCHHHH
T ss_pred CEEEEEECCEEEEecHHHH-hcCCCccHHHHhcCCCCCCCCCCcEEE-ec--ChHHHHHHHHHhcCCCCCCCCcccHHHH
Confidence 3455559999997776543 222 234555655321 112334443 43 448999999999887776544 246788
Q ss_pred HHhHHHhcCcccc
Q 011665 102 RCAAEYLEMTEDL 114 (480)
Q Consensus 102 rCAAe~LeMte~~ 114 (480)
+--|+|.++.+.+
T Consensus 81 ~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 81 EEELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHHHTCCGGG
T ss_pred HHHHHHhCCChHH
Confidence 9999999998753
No 37
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.53 E-value=64 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.8
Q ss_pred ccCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHH
Q 011665 216 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAK 250 (480)
Q Consensus 216 ~~L~i~~f~rVi~am~~rg~-~~~~I~~~l~~Ya~k 250 (480)
..||.++++++=.-.+..|+ +.++|-.+|..|...
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred EecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35788899999888888998 888999999999764
No 38
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=22.32 E-value=27 Score=31.59 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=14.2
Q ss_pred ChhHHHHHhhhccCCCC
Q 011665 463 GLYRAIDSYLKVISNFC 479 (480)
Q Consensus 463 gLYRAIDiYLKaHp~L~ 479 (480)
+++++||-||-+||..|
T Consensus 148 ~~~k~ie~yllanp~~~ 164 (168)
T 3rws_A 148 GFTKAVESFLLANPDYN 164 (168)
T ss_dssp HHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHhChHhh
Confidence 57999999999999875
No 39
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.31 E-value=90 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=31.1
Q ss_pred ccCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHH
Q 011665 216 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAK 250 (480)
Q Consensus 216 ~~L~i~~f~rVi~am~~rg~-~~~~I~~~l~~Ya~k 250 (480)
..|+-++++++-...+..|+ ..++|-.+|..|..+
T Consensus 14 vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999998 788999999999876
No 40
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A
Probab=20.60 E-value=31 Score=30.35 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=23.2
Q ss_pred ccCCCCCChhHHHHHHHhcCCCcccCCCChhHHHHHhhhccCC
Q 011665 435 VARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISN 477 (480)
Q Consensus 435 VA~D~nL~~sKF~~Lae~lPd~AR~~hDgLYRAIDiYLKaHp~ 477 (480)
...+.++++.+....-+. -.++++||+-||.+||.
T Consensus 122 ~~~~~~~~~~~~~~~~~~--------~~~~~k~ie~yll~~p~ 156 (158)
T 2qim_A 122 TKGDAQPNEEEGKAAKAR--------GDAFFKAIESYLSAHPD 156 (158)
T ss_dssp ESTTCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHCSS
T ss_pred ECCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHHhCcC
Confidence 345556666555322221 34789999999999998
No 41
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=20.48 E-value=33 Score=37.21 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=24.1
Q ss_pred CChhHHHHHHHhcCCCcccCCCChhHHHHHhhhccCCCC
Q 011665 441 LSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFC 479 (480)
Q Consensus 441 L~~sKF~~Lae~lPd~AR~~hDgLYRAIDiYLKaHp~L~ 479 (480)
..=..|.+++--|+ .-|=.||||..||+.||.+.
T Consensus 335 w~h~~Fkdii~KVa-----N~EiyYKAi~FYL~e~P~lL 368 (624)
T 3lvg_A 335 WKEGQFKDIITKVA-----NVELYYRAIQFYLEFKPLLL 368 (624)
T ss_dssp CCGGGGTTTGGGCS-----CSHHHHHHHHHHTTSCCTTS
T ss_pred ccHHHHHHHHHHcc-----hHHHHHHHHHHHHHhChHHH
Confidence 33445665555554 34678999999999999873
Done!