BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011666
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/446 (21%), Positives = 186/446 (41%), Gaps = 19/446 (4%)
Query: 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANS-WATVTGFAFMIG 101
+EA N + + P+++A+V + V + AG + +++A ++A S W + F +G
Sbjct: 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW--LPSILFGVG 66
Query: 102 LSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSIS 161
L AL + Q GA + + T+ I+ + + +++
Sbjct: 67 LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126
Query: 162 KQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY---- 217
+ YM +I + AY + Q + F S+ P + + + ++ + + FVY
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 218 LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALP 275
LG G +A ++ WI +L+L+ Y++ +K+ H +E F ++ + +L P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246
Query: 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNE 335
AA + E F ++ L + ++ + +A+ N S+ +M + AA S RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHK 304
Query: 336 LGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNSPEIIKEFASLTPLLA 395
LG + A A A ++ + ++ L A
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364
Query: 396 LSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGF-----KLSLYVKGL 450
+ +D+VQ V +G RG +++ +G+P ILG + L KG
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424
Query: 451 WIGLICGLFCQASSLLLITLRRKWTK 476
W+G I GL +++ L++ R W +
Sbjct: 425 WLGFIIGL---SAAALMLGQRLYWLQ 447
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/445 (21%), Positives = 166/445 (37%), Gaps = 36/445 (8%)
Query: 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIG 101
L+E + +LPM+LA V I V + AG G+ +LA L +S A T + +G
Sbjct: 10 LKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSS-AFATVYITFMG 68
Query: 102 LSGALETLCGQGFGAKHYR--------------MLGIYLQAXXXXXXXXXXXXXXXXXYT 147
+ AL + Q +GA +LGI+ Y
Sbjct: 69 IMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYV 128
Query: 148 EPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAI 207
E + S++ AA+ + L AY N R +I L+ F+A + +
Sbjct: 129 EGTMAQYMLFTSLAMPAAMVHR----ALHAYASSLNRPR-------LIMLVSFAAFVLNV 177
Query: 208 HFGIAYAFVY----LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFE--HTWEGFSFE 261
+ Y FVY + +LG G +A W S L L Y+ K F F
Sbjct: 178 P--LNYIFVYGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKP 235
Query: 262 SFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMIT 321
++ I K+ P LE AF +VFL + P E + + ++ + YMI
Sbjct: 236 DWAVFKQIWKIGAPIGLSYFLEASAFSFIVFL--IAPFGEDYVAAQQVGISLSGILYMIP 293
Query: 322 YGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNSP 381
+ +A + R+ LG +A+ + A +++ P
Sbjct: 294 QSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDP 353
Query: 382 EIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGF 441
++ +++ L D Q + S RG + ++ + A F+ G+ +L +
Sbjct: 354 AVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAY 413
Query: 442 KLSLYVKGLWIGLICGLFCQASSLL 466
+ + + G W LI L A +L+
Sbjct: 414 RFDMGIYGFWTALIASLTIAAVALV 438
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 382 EIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHL-AVWANLATFYFIGMPIAAILG 440
E+I +S T LL S+T + G+ +G G + V NLATF +P +I+
Sbjct: 120 ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA 179
Query: 441 FKLSLYVKGL 450
Y++ L
Sbjct: 180 VIYGRYLRKL 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,718,937
Number of Sequences: 62578
Number of extensions: 401695
Number of successful extensions: 828
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 7
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)