Query 011666
Match_columns 480
No_of_seqs 270 out of 1902
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 9E-58 2E-62 447.3 54.8 433 42-478 13-449 (455)
2 PRK10189 MATE family multidrug 100.0 1.9E-53 4.2E-58 420.7 57.9 432 42-476 25-466 (478)
3 PRK00187 multidrug efflux prot 100.0 7.8E-53 1.7E-57 416.6 55.6 431 39-472 3-444 (464)
4 PRK09575 vmrA multidrug efflux 100.0 1.3E-50 2.9E-55 400.1 53.0 425 41-471 7-435 (453)
5 PRK01766 multidrug efflux prot 100.0 2.8E-50 6E-55 400.0 54.9 432 43-477 9-447 (456)
6 PRK10367 DNA-damage-inducible 100.0 3.7E-50 7.9E-55 393.8 54.0 424 43-477 6-435 (441)
7 TIGR01695 mviN integral membra 100.0 2E-37 4.3E-42 312.7 50.7 413 48-472 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 5.1E-37 1.1E-41 308.7 48.0 415 49-472 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 6.4E-37 1.4E-41 293.6 43.2 338 54-394 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 2E-35 4.4E-40 290.0 46.0 405 48-471 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 5.3E-37 1.1E-41 297.9 31.3 435 42-478 24-458 (473)
12 PF03023 MVIN: MviN-like prote 100.0 4.8E-30 1E-34 252.0 49.6 386 76-472 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1E-27 2.2E-32 230.9 50.9 421 45-473 6-438 (518)
14 PRK10459 colanic acid exporter 100.0 4.8E-28 1E-32 243.4 46.2 398 45-471 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 8.2E-26 1.8E-30 226.7 40.3 399 43-464 3-403 (480)
16 PRK10189 MATE family multidrug 99.9 3.3E-21 7.1E-26 191.2 27.1 204 264-470 26-235 (478)
17 PRK10367 DNA-damage-inducible 99.9 5.4E-21 1.2E-25 187.8 27.5 207 263-471 5-211 (441)
18 PRK00187 multidrug efflux prot 99.9 5.3E-21 1.1E-25 189.7 26.9 206 40-246 230-442 (464)
19 COG0534 NorM Na+-driven multid 99.9 9.5E-21 2.1E-25 186.2 27.8 209 262-473 12-222 (455)
20 PRK09575 vmrA multidrug efflux 99.9 1.3E-20 2.9E-25 186.5 26.9 207 263-472 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 6.5E-20 1.4E-24 182.5 28.0 207 263-472 8-218 (456)
22 TIGR01695 mviN integral membra 99.8 7.3E-18 1.6E-22 170.3 32.0 206 40-247 217-427 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.2E-16 2.7E-21 147.9 32.8 270 49-335 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 5.5E-17 1.2E-21 155.5 26.1 194 275-471 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 7.5E-16 1.6E-20 151.7 31.6 207 41-249 193-404 (451)
26 PF01554 MatE: MatE; InterPro 99.8 1.1E-18 2.3E-23 148.1 8.3 162 275-438 1-162 (162)
27 TIGR02900 spore_V_B stage V sp 99.8 2.5E-16 5.5E-21 158.5 25.0 203 40-247 219-433 (488)
28 COG0728 MviN Uncharacterized m 99.7 2.1E-14 4.6E-19 139.3 35.1 209 40-250 226-439 (518)
29 PF01554 MatE: MatE; InterPro 99.7 3E-18 6.5E-23 145.4 5.8 160 54-214 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 5.4E-14 1.2E-18 141.6 34.8 201 40-246 201-403 (492)
31 PRK15099 O-antigen translocase 99.7 9.3E-15 2E-19 143.7 26.3 200 40-246 209-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.7 5.9E-13 1.3E-17 121.6 31.3 246 65-334 3-250 (251)
33 COG2244 RfbX Membrane protein 99.6 2.6E-13 5.6E-18 136.3 26.4 186 42-233 209-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 1.4E-08 3E-13 101.1 32.1 421 50-472 5-470 (549)
35 KOG1347 Uncharacterized membra 99.3 6.1E-10 1.3E-14 109.2 20.4 206 263-472 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.1 2E-06 4.4E-11 80.3 35.3 420 44-476 6-453 (530)
37 PF07260 ANKH: Progressive ank 99.1 1E-06 2.2E-11 78.7 28.7 262 42-311 7-283 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.3E-05 2.8E-10 66.3 17.5 79 168-248 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.4 0.0001 2.2E-09 73.9 21.9 201 46-247 253-469 (549)
40 PF14667 Polysacc_synt_C: Poly 98.2 9.4E-06 2E-10 67.1 9.3 79 391-472 2-80 (146)
41 PF01943 Polysacc_synt: Polysa 98.2 0.00073 1.6E-08 62.1 22.9 187 271-471 3-190 (273)
42 PF13440 Polysacc_synt_3: Poly 98.0 0.0033 7.1E-08 57.0 22.7 162 291-470 9-171 (251)
43 KOG2864 Nuclear division RFT1 97.9 0.0011 2.4E-08 62.6 17.5 199 47-247 240-448 (530)
44 PF07260 ANKH: Progressive ank 97.6 0.052 1.1E-06 49.4 21.9 159 263-427 7-168 (345)
45 COG4267 Predicted membrane pro 96.8 0.47 1E-05 44.3 33.4 343 93-462 71-436 (467)
46 COG4267 Predicted membrane pro 82.6 46 0.00099 31.7 20.1 135 320-471 76-210 (467)
47 PF04505 Dispanin: Interferon- 62.4 54 0.0012 23.7 6.9 39 321-359 33-71 (82)
48 COG2211 MelB Na+/melibiose sym 50.2 2.8E+02 0.006 27.8 24.3 51 44-94 10-63 (467)
49 PF02487 CLN3: CLN3 protein; 46.3 47 0.001 32.3 5.7 24 43-66 240-263 (402)
50 PF05975 EcsB: Bacterial ABC t 45.0 3E+02 0.0065 26.7 16.0 40 118-157 89-130 (386)
51 PRK03612 spermidine synthase; 42.3 3.9E+02 0.0085 27.3 24.3 44 200-245 153-197 (521)
52 TIGR00383 corA magnesium Mg(2+ 40.0 1E+02 0.0022 28.9 7.0 54 418-474 256-317 (318)
53 KOG2468 Dolichol kinase [Lipid 36.6 2.6E+02 0.0057 27.5 8.7 75 273-356 379-453 (510)
54 PF03904 DUF334: Domain of unk 35.8 2.5E+02 0.0055 24.7 7.8 39 118-156 142-180 (230)
55 KOG1330 Sugar transporter/spin 35.0 3.1E+02 0.0067 27.4 9.2 52 61-113 40-91 (493)
56 PRK09546 zntB zinc transporter 34.8 1.5E+02 0.0033 27.9 7.2 50 422-474 266-323 (324)
57 KOG2325 Predicted transporter/ 31.7 5.5E+02 0.012 25.9 16.9 29 444-472 450-478 (488)
58 PF14184 YrvL: Regulatory prot 31.5 2.7E+02 0.0059 22.3 11.8 96 366-464 21-117 (132)
59 PRK11085 magnesium/nickel/coba 26.8 2.5E+02 0.0055 26.4 7.1 53 419-474 255-315 (316)
60 COG0598 CorA Mg2+ and Co2+ tra 25.9 2E+02 0.0043 27.1 6.4 49 422-474 264-321 (322)
61 PF05313 Pox_P21: Poxvirus P21 25.5 3E+02 0.0066 23.2 6.3 24 223-246 136-159 (189)
62 PF06609 TRI12: Fungal trichot 24.7 8.1E+02 0.018 25.6 31.0 61 364-426 328-388 (599)
63 PF14936 p53-inducible11: Tumo 23.9 4.3E+02 0.0094 22.1 10.9 111 359-475 64-176 (179)
64 PF10337 DUF2422: Protein of u 23.9 7.4E+02 0.016 24.8 13.8 26 40-65 11-36 (459)
65 PF14184 YrvL: Regulatory prot 23.1 4E+02 0.0086 21.3 12.9 89 129-219 7-96 (132)
66 KOG1688 Golgi proteins involve 20.2 4.3E+02 0.0094 22.1 6.1 25 29-53 104-128 (188)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=9e-58 Score=447.28 Aligned_cols=433 Identities=27% Similarity=0.409 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
++..|+++++++|++++++.+.+++++|+.++||+|++++++.++++++..++ ..+..|++.|..+.++|++|++|+++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 46899999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011666 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (480)
+++..++++.+.++++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.++..+..++.+.+|+.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 9999999999999999888776 999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHHHHHHHHHHhHHH
Q 011666 201 SALPMAIHFGIAYAFVYL-TS-LGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPSA 277 (480)
Q Consensus 201 ~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (480)
++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..++++++++ .+....+..+.+++..|++++.|+|.+
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~ 251 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence 999999999999999998 46 999999999999999999999999977765 233333444556799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011666 278 AMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 357 (480)
+++..+...+...+.+.+++| ++.+|+|+++.++.++.+++..++++++.+++++++|+||+|++++..+.+..+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~ 329 (455)
T COG0534 252 LESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL 329 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHH
Q 011666 358 LALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAA 437 (480)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 437 (480)
++...+++++++++++..+|++|+|+.+.+..++++.+...++++++.+..+.+||.||++.++++++++.|.+.+|+.+
T Consensus 330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~ 409 (455)
T COG0534 330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY 409 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCccccc
Q 011666 438 ILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVD 478 (480)
Q Consensus 438 ~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~~~ 478 (480)
++.... +|..|+|++...++.+..+...++++|++|++..
T Consensus 410 ~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (455)
T COG0534 410 LLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA 449 (455)
T ss_pred HHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 997765 8999999999999999999999999999997754
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.9e-53 Score=420.75 Aligned_cols=432 Identities=17% Similarity=0.242 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
.+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+|+
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35689999999999999999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 011666 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLH--QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (480)
+++..+.++.++..++++.+++ ..+.++++.++. .|+|+.+.+..|+++..++.++..+...+.+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988877 778899999984 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCccchhHHHHHHHHHHHHHHHHHHHHhcc--cccccccC-CChhhHHHHHHHHH
Q 011666 199 FFSALPMAIHFGIAYAFVYLT----SLGFKGASLAASVSLWISMLMLVTYVLCAK--KFEHTWEG-FSFESFSFILTILK 271 (480)
Q Consensus 199 ~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 271 (480)
+.++++.++|++++++++++. ++|+.|+++|+.+++.+..++..+++.+++ ..+.++++ ..+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999863 789999999999999999888776664332 22222222 22235788999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011666 272 LALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVT 351 (480)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 351 (480)
.|+|.+++.........+.+.+++++| ++++|+|+++.++.++.+++..+++++..+++++++|+||.+++|+..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999988888888889888 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHH
Q 011666 352 VKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFI 431 (480)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 431 (480)
.++++++++.++++++++++++..+|++|+|+.+.+..++++.+...++++++.+..+.++|.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCccc
Q 011666 432 GMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK 476 (480)
Q Consensus 432 ~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~ 476 (480)
.+|+.+++....++|+.|+|++..+++.+..++..+++++.+|+|
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 999999998777899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.8e-53 Score=416.55 Aligned_cols=431 Identities=23% Similarity=0.313 Sum_probs=394.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCc
Q 011666 39 VLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (480)
Q Consensus 39 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 118 (480)
.+|++..|++++.++|.+++++.+.+.+++|+.+++|+|++++++++++.++..+. ..+..|++++..+.++|++|++|
T Consensus 3 ~~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 3 VPPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999998 88889999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 011666 119 YRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (480)
+|++++.++.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999887775567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-ccCCChhhHHHHHHHHHH
Q 011666 199 FFSALPMAIHFGIAYAFVYLT----SLGFKGASLAASVSLWISMLMLVTYVLCAKKFE-HT-WEGFSFESFSFILTILKL 272 (480)
Q Consensus 199 ~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 272 (480)
+.++++.++|++++++++++. ++|+.|+++|+.+++....+...++++++++.+ .+ +++..+.+++..|++++.
T Consensus 162 ~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 241 (464)
T PRK00187 162 VISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRL 241 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHh
Confidence 999999999999999999862 589999999999999888877766665443221 11 112223457789999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011666 273 ALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTV 352 (480)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 352 (480)
++|.++++..+.....++..+++++| +++++++++++++..+...+..+++++..+.++|++|+||+|++++..+.+.
T Consensus 242 g~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l 319 (464)
T PRK00187 242 GLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGI 319 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccC--cH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHH
Q 011666 353 KLSVLLALVVVLALGFGHNIWAGFFSN--SP---EIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLAT 427 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 427 (480)
.++++++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||++.++++++++
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~ 399 (464)
T PRK00187 320 GFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLAC 399 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHH
Confidence 999999999999999999999999964 44 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 428 FYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 428 ~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
.|++++|+++++.+.+++|+.|+|+++.+++.+..++...+++.+
T Consensus 400 ~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 400 YWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888889999999999999999888766555433
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.3e-50 Score=400.13 Aligned_cols=425 Identities=17% Similarity=0.187 Sum_probs=389.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc
Q 011666 41 DLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (480)
Q Consensus 41 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 119 (480)
+++..|++++.++|..++++...+.+++|+.++++ +|+++++++++++++..+. ..+..+++.+..+.++|++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 44688999999999999999999999999999999 5999999999999999988 888899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 011666 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (480)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (480)
|++++.++.++.++.+++++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+.......+|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999988877 8889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccc-cccccCCChhhHHHHHHHHHHHhHHH
Q 011666 199 FFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKF-EHTWEGFSFESFSFILTILKLALPSA 277 (480)
Q Consensus 199 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (480)
..++++.++|+++++++++.+++|+.|+++|+++++.+..++..++.+++++. +.+.+ ..+.+++..|++++.|+|..
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~ig~P~~ 244 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLK-ELRFNWSLAPKIVLLGSSSF 244 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeec-cCCcCHHHHHHHHHhChhHH
Confidence 99999999999999999998889999999999999999999888777544332 22222 22345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011666 278 AMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 357 (480)
++...+.....+.+.+.+++|+ ++++|+++++.++..+..++..+++++..|.+++++|+||+|++++..+.+..+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~ 323 (453)
T PRK09575 245 FMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL 323 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 9999999998888888888873 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccC-cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHH
Q 011666 358 LALVVVLALGFGHNIWAGFFSN-SPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIA 436 (480)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 436 (480)
.+++.++++.++++++..+|++ |+|+.+.+..++++.+++.++++++....+++++.||++.++..++.. +.+++|+.
T Consensus 324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~ 402 (453)
T PRK09575 324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFL 402 (453)
T ss_pred HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHH
Confidence 9999999999999999999995 789999999999999999999999999999999999999999999876 58899999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 437 AILGFKLSLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 437 ~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
+++.. .+|+.|+|+++.+++.+..++...++++
T Consensus 403 ~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 403 FILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99854 3799999999999999988877665544
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.8e-50 Score=400.00 Aligned_cols=432 Identities=25% Similarity=0.403 Sum_probs=399.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHH
Q 011666 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (480)
Q Consensus 43 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 122 (480)
+..|++++.++|..++++...+.+.+|..+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|+|+.
T Consensus 9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 6899999999999999999999999999999999999999999999987776 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011666 123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS 201 (480)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 201 (480)
++.++.++.+.++++++++++ ..+.+++..+++.|++..+.+..|+++.+++.++..+..++++++|+.|+++.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999988877 7778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh----cCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc--cccCCChhhHHHHHHHHHHHhH
Q 011666 202 ALPMAIHFGIAYAFVYL----TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALP 275 (480)
Q Consensus 202 ~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p 275 (480)
+++.++|+++++++++. +++|+.|+++|+.+++.+..++..++.+++++.+. .+.++.+.+++..|++++.++|
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P 247 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP 247 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccch
Confidence 99999999999999864 36899999999999999999988888765443221 1222223456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011666 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLS 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 355 (480)
.+++...+...+.++..+++++| ++++++++++.++.++...+..+++.+..+.++|++|+||++++++..+.+..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~ 325 (456)
T PRK01766 248 IGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVG 325 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHH
Q 011666 356 VLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPI 435 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 435 (480)
+.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++++++....+++++.||++.++++++++.|.+++|+
T Consensus 326 ~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~ 405 (456)
T PRK01766 326 LGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPL 405 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCcccc
Q 011666 436 AAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKV 477 (480)
Q Consensus 436 ~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~~ 477 (480)
.+++...+++|+.|+|+++.+++.+..++..+++++.+|+..
T Consensus 406 ~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (456)
T PRK01766 406 GYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPS 447 (456)
T ss_pred HHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987778999999999999999999999999988887743
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=393.79 Aligned_cols=424 Identities=17% Similarity=0.161 Sum_probs=373.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHL-GQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 43 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
++.|++++.++|.+++++++.+.+++|+.+++++ |++++++++++.++..+. ..+..+++.+..+.++|++|++|+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 5688999999999999999999999999999997 678999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011666 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (480)
+++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.++..+..++.+++|+.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988876 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCChhhHHHHHHHHHHHhHHHHH
Q 011666 201 SALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-TWEGFSFESFSFILTILKLALPSAAM 279 (480)
Q Consensus 201 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~ 279 (480)
++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++++.+. +.+..+...++..|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 99999999999999999889999999999999999998888777754332221 11111111124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011666 280 VCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLA 359 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (480)
+..+...+.+.+.+++++| ++++++|+++.++.++.+++..+++++..|.+++++|+||+|++|+..+++.+++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC---chhhHHHHHHHHHHHHHHHHH
Q 011666 360 LVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCG---WQHLAVWANLATFYFIGMPIA 436 (480)
Q Consensus 360 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~l~ 436 (480)
.+++++++++++++..+|++|+|+.+.+..++++.++..+..+...+...++++.+ |++.++++++++.|+..+
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~--- 399 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL--- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999998876443334444444455555 599999999998764222
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCcccc
Q 011666 437 AILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKV 477 (480)
Q Consensus 437 ~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~~ 477 (480)
. .+.+|+.|+|++..+++.+..++...+++|. |+|.
T Consensus 400 --~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~~ 435 (441)
T PRK10367 400 --T--LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRNG 435 (441)
T ss_pred --H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 1 2347999999999999999998877765555 8663
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2e-37 Score=312.66 Aligned_cols=413 Identities=14% Similarity=0.087 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhccCcccHHHH
Q 011666 48 QVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLEL-AGATLANSWATVTGFAFM-IGLSGALETLCGQGFGAKHYRMLGI 124 (480)
Q Consensus 48 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~g~~~~~~~~~ 124 (480)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688899999999999999999999999 999999 899999999877623333 478888888777664332 57776
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011666 125 YLQASWITSLFFSI-IISFL-WIYTEPILILL--HQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (480)
Q Consensus 125 ~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (480)
.+.+++....+.+. +..++ +++++++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 44455 77778888877 4567777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccchhH--HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHH
Q 011666 201 SALPMAIHFGIAYAFVYLTSLGFKGAS--LAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAA 278 (480)
Q Consensus 201 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 278 (480)
+++..+++++...++.. ++|..|++ +++++++.+..++..++.+|++. +. +.+.+ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LL-KPRFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cc-cCcCC-CCChhHHHHHHHHHHHHH
Confidence 99998887765444444 78999988 99999999998888777654331 11 11111 235688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011666 279 MVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYM-ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL 357 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 357 (480)
++...++...++..+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++|+||.++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766 6799999999999988765 57799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccC----cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHH
Q 011666 358 LALVVVLALGFGHNIWAGFFSN----SPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGM 433 (480)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 433 (480)
+++|+++++.++++++.+++.+ |+|.++.+..++++++++.++.+++....+.+++.||+|.+++.+.... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 5677888999999999999999999999999999999999999999985 8899
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 434 PIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 434 ~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
++++++ .+.+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l--~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLL--IFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 4458999999999999999998887777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.1e-37 Score=308.67 Aligned_cols=415 Identities=15% Similarity=0.176 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHH
Q 011666 49 VVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (480)
Q Consensus 49 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 127 (480)
.|.+.|..+++++..+.+++|..+++| +|++++|+++.+.++..+.......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999999987344567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011666 128 ASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMA 206 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 206 (480)
+++.+..+.+++.+++ ..+.+++...++.+++. ..++++..+..++..+....++.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988876 66777777766666543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHHHHHHHHHHhHHHHH
Q 011666 207 IHFGIAYAFVYL-----TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHT--WEGFSFESFSFILTILKLALPSAAM 279 (480)
Q Consensus 207 ~~i~~~~~li~~-----~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 279 (480)
+++.++..++.. .++++.|+++++.+++.+..+...++.+++++.+.+ +.+..+.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776655542 245678888999999999988877666444332211 1112233467899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----c-hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011666 280 VCLEYWAFEILVFLAGLMP----N-SE---LTTSLI-AMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAV 350 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~----~-~~---~~~~~~-~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 350 (480)
++...+...++..++++.. . .. +..+.| +.+.++.++...+..+++++..|.++++.|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988876532 0 01 233333 3566777888788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHH
Q 011666 351 TVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYF 430 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 430 (480)
+.++...+++|+++++.++++++..++.++++ +.++++++++..++..++....+.+++.||+|..++.++... +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 567899999999999999999999999999999999999986 8
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 431 IGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 431 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
+++++++++...+.+|..|+|+++.+++.+..++..++.+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888534789999999999999999998888877653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.4e-37 Score=293.56 Aligned_cols=338 Identities=31% Similarity=0.516 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHHHHHHHH
Q 011666 54 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITS 133 (480)
Q Consensus 54 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 133 (480)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|+.|++|+|+.++.++..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 011666 134 LFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIA 212 (480)
Q Consensus 134 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 212 (480)
.+++++.+++ ..+.+++.++++.+++..+++..+++++.+..++..+..+..+++|+.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998877 888899999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hcC-CccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011666 213 YAFVY-LTS-LGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEIL 290 (480)
Q Consensus 213 ~~li~-~~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 290 (480)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+.++++..+.+++..|+++++++|..+++....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 567 8899999999999999999888777654444433333333457789999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011666 291 VFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGH 370 (480)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
+.+++.++ ++++++|+++.++.++...+..+++++..|.+++++++||.++.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCcHHHHHHHHHHHHHH
Q 011666 371 NIWAGFFSNSPEIIKEFASLTPLL 394 (480)
Q Consensus 371 ~~i~~l~~~~~~~~~~~~~~l~~~ 394 (480)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888887764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2e-35 Score=289.96 Aligned_cols=405 Identities=12% Similarity=0.005 Sum_probs=343.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHH
Q 011666 48 QVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYL 126 (480)
Q Consensus 48 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 126 (480)
+.|.+.+...+.++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688889999999999999999999999 99999999999999998874555889999999999988 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011666 127 QASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPM 205 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 205 (480)
++++.+....+++.+++ ..+.+++...++.+++. . .+..+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 88888988877776652 2 3556666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011666 206 AIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYW 285 (480)
Q Consensus 206 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 285 (480)
++|+++ +++... ..|+.|+++|+++++.+..+...++.+++++.+.++.+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444442 2399999999999999998877777755443322222222 3467889999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011666 286 AFEILVFLAG-LMPNSELTTSLIAMCVNTES-VAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVV 363 (480)
Q Consensus 286 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~~-~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
....++.+++ .+| ++++|+|+.+.|+.+ +...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 889999999999977 45888999999999999995 6789999999999999999999999
Q ss_pred HHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011666 364 LALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKL 443 (480)
Q Consensus 364 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 443 (480)
+++++++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++.....++.. ..+++++++++ .+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l--i~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWL--IP 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HH
Confidence 999999999999999876 66688899999999999988888888888888888888877776 58999999998 66
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 444 SLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 444 ~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
.+|..|+++++.+++++......+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999877665553
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=297.86 Aligned_cols=435 Identities=43% Similarity=0.714 Sum_probs=414.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
.++.|++++++.|.++..+.+...+.++..++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 36889999999999999999999999999999999999999999999999997788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011666 122 LGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS 201 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 201 (480)
...+.+++..+....+++...++.+.+++...+++|+++...+..|.++..+..+..........++|++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHH
Q 011666 202 ALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVC 281 (480)
Q Consensus 202 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 281 (480)
....++|+.+++++++.+++|..|++++..+++.........|..... ....|..+..+ ++.++++++.++|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999999986544 56667777666 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011666 282 LEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALV 361 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (480)
++++.+.+.....+.+++...++++.++..++....+++..+++.++..++++.+|+|+++++|.....+....+..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011666 362 VVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGF 441 (480)
Q Consensus 362 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 441 (480)
.+..+....+.+..+|++|+|+.+......++++...++++.+.+..+..++.|+++...++++...+++.+|..+.+..
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHHHHccCccccc
Q 011666 442 KLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVD 478 (480)
Q Consensus 442 ~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~~~ 478 (480)
..++|..|.|.++..+..+..........+.+|+++.
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~ 458 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQA 458 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHH
Confidence 7889999999999999888998899999999998864
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=4.8e-30 Score=252.00 Aligned_cols=386 Identities=16% Similarity=0.143 Sum_probs=335.5
Q ss_pred cCh-hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011666 76 LGQ-LELAGATLANSWATVTGFAFM-IGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILI 152 (480)
Q Consensus 76 lg~-~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 152 (480)
+|. ++..+|..+..+..++...+. .+++++..|...+.. ++++|+.++..+..+.+..+.++.++++ .++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 674 467789999999998844454 468999999999998 7888999999999988888888888877 888999998
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHhhhcCCc---cchhH
Q 011666 153 LL--HQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLG---FKGAS 227 (480)
Q Consensus 153 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 227 (480)
++ +.+++..+.+.++++++++..++.++..++.+++++++|...+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 567888999999999999999999999999999999999999999888888775554444444 556 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011666 228 LAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLI 307 (480)
Q Consensus 228 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 307 (480)
+|.+++..+..++.....+|... +.+. +++ .+.+..|++++...|..+.....++...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGF-RFRP-KFD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-cccc-cCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 99999999999888888764432 2111 111 12356899999999999999999999999999999998 5599999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----CcHH
Q 011666 308 AMCVNTESVAYMI-TYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFS----NSPE 382 (480)
Q Consensus 308 ~~~~~i~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 382 (480)
+.++++.++...+ ..+++++..|.+++...++|.++.++..++.++....+.+|+++++..+++++++++. .|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 9999999997754 5699999999999999999999999999999999999999999999999999999985 3566
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 011666 383 IIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQA 462 (480)
Q Consensus 383 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~ 462 (480)
..+....++++++++.++.+++.++...+++.||+|.+++++++.. ++++.+++++ .+.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999985 9999999888 567899999999999999999
Q ss_pred HHHHHHHHcc
Q 011666 463 SSLLLITLRR 472 (480)
Q Consensus 463 ~~~~~~~~~~ 472 (480)
++..+..+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888887776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1e-27 Score=230.94 Aligned_cols=421 Identities=14% Similarity=0.077 Sum_probs=351.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cCh-hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhhhccCcccH
Q 011666 45 AKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQ-LELAGATLANSWATVTGFAFMI-GLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 45 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~g~~~~~~ 121 (480)
.+.++|.++-.....+++.+.+++...+++. +|. ....++..+..+.+++--.+.. .++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3467778888888888999999998888888 997 5677899999999987555444 458999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 011666 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILL-HQ--DPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (480)
.++..+........+.+.++++ .++.+.+.+.. +. |++....+....++..+..++.++.....+++++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7777776665666777777776 77777777444 32 23333367888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHH
Q 011666 198 IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSA 277 (480)
Q Consensus 198 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (480)
....+..++.-+.....+.+....-..+.++++.++-+...++.+..++|.+.....+..++ .+..|++.+.-.|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHH
Confidence 99998888776655555555432236688899999999999999999976553222222222 268899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011666 278 AMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAY-MITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSV 356 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (480)
++....+++..+++.+.+.+. +-+++.++.++++.++.. .+..+++++..|.+|++..++|.++.++..+.++++.+
T Consensus 243 l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999997 458999999999999977 66779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccc----CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHH
Q 011666 357 LLALVVVLALGFGHNIWAGFFS----NSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIG 432 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 432 (480)
++++|.++++.++++++++++. .+++......+.+..++++.++..+..++...+++.+|+|.++++++++. ++|
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHH
Confidence 9999999999999999999884 24444677889999999999999999999999999999999999999985 999
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccC
Q 011666 433 MPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRK 473 (480)
Q Consensus 433 i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~ 473 (480)
+.+++.+ .+.+|..|++.++.++..++..+.++..+|+.
T Consensus 400 ~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 400 ILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999777 56689999999999999888877777766653
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=4.8e-28 Score=243.36 Aligned_cols=398 Identities=14% Similarity=0.121 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHH
Q 011666 45 AKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLG 123 (480)
Q Consensus 45 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 123 (480)
.++..+.+.+..+++......+++...+++| +|++++|.++.+..+.++.......|++++... . +|++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--H
Confidence 4678889999999999999999999999999 999999999999999999856777788886532 1 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 011666 124 IYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSA 202 (480)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 202 (480)
+..++.+.+....++++.++ ..+++++...++ +++. ...+++..+..++..+.......++..++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455666667777766665 555555554444 4432 34577777778888888889999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHH
Q 011666 203 LPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCL 282 (480)
Q Consensus 203 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 282 (480)
+..++..+....+... ++|..+.+++..+++.+..+...+..++ + .+++ . ..+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~~---~-~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRK-I-YRPA---L-HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhcc-c-CCcc---c-eecHHHHHHHHhhhHHHHHHHHH
Confidence 8888777777666553 7899999999999988877655433322 1 1111 1 12356789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011666 283 EYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYM-ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALV 361 (480)
Q Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (480)
..+..+.|..+++++. |++++|.|+.+.++.+.... +...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988876 48899999999999887554 4456788999999885 578899999999999999999999
Q ss_pred HHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011666 362 VVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGF 441 (480)
Q Consensus 362 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 441 (480)
+++++.+++++++.++.+|+ +..+.+.++++++..++..+..+....+++.||+|..++.+++.. .+.+|..+.+
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~-- 374 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG-- 374 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--
Confidence 99999999999999888765 788899999999999999999999999999999999999999875 7888887777
Q ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 442 KLSLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 442 ~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
.+.+|+.|+++++.+++.+......+..+|
T Consensus 375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 375 GQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999999988877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=8.2e-26 Score=226.66 Aligned_cols=399 Identities=17% Similarity=0.170 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 43 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|+..+..+.++++..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788899999999999999999999999999 9999999999999999998666779999999999998865555444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011666 122 LGIY-LQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (480)
Q Consensus 122 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (480)
.... ....+......+.+......+..+. ++ .....+....+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444433333333332222221 22 23345777888999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHH
Q 011666 201 SALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMV 280 (480)
Q Consensus 201 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 280 (480)
.+.+ ..-......+. ........++..++..........+.+++++.. .+...+ ..++..|+++++++|...+.
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGL-KRPILR-FSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccccC-chhHHHHHHHHHhhHHHHHH
Confidence 4444 11111111122 124455566667777666666555553222111 111111 13678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 011666 281 CLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (480)
....+..+.|..+++++. +++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011666 361 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILG 440 (480)
Q Consensus 361 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 440 (480)
|..+++.++++++..++.+++ +..+...++++++..++.+........+++.|+++..++.+.+.. ++++.+++++
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH-
Confidence 999999999999999988766 455888999999999999999999999999999999999999986 8999999998
Q ss_pred HHhcCCchhhHHHHHHHHHHHHHH
Q 011666 441 FKLSLYVKGLWIGLICGLFCQASS 464 (480)
Q Consensus 441 ~~~~~g~~g~~~a~~~~~~i~~~~ 464 (480)
++.+|..|+..++ .+.....+.
T Consensus 382 -i~~~g~~g~~~a~-~~~~~~~~~ 403 (480)
T COG2244 382 -IPRFGLIGAAIAT-ASVIALALL 403 (480)
T ss_pred -HHhhhhhhHHHHH-HHHHHHHHH
Confidence 6678999999999 443333333
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=3.3e-21 Score=191.22 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011666 264 SFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQ 343 (480)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~ 343 (480)
+..|++++.++|.+++++.......+++.+++++| ++++|+++++.++..+...+..+++++..+.++|++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45899999999999999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc--CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHH
Q 011666 344 AKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFS--NSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAV 421 (480)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (480)
+++..+.+..+.+.++++.+++.+++++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011666 422 WANLATFYFIGMPIAAILGFK----LSLYVKGLWIGLICGLFCQASSLLLITL 470 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~i~~~~~~~~~~ 470 (480)
+++++. +++|+++++++... +++|+.|+|+++.+++.+..++..+++.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 59999999988653 3789999999999999998877655554
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=5.4e-21 Score=187.85 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 011666 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPD 342 (480)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 342 (480)
++..|++++.++|..++++...+...+|..++++++ +++++++.+++.++.++...+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 456789999999999999999999999999999985 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHH
Q 011666 343 QAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVW 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (480)
++++..+.+..++.+++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+......++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 423 ANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 423 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
.+++.. ++|+++++++...+++|+.|+++++.+++.+..++..++++|
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 999999999977778999999999999999988776555543
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=5.3e-21 Score=189.70 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=192.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 119 (480)
++++..|++++.++|..++++.......+|..+++++|+++++++++++++..+. ..+..|++.+..++++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5678899999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--Ch---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q 011666 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQ--DP---SISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSI 193 (480)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (480)
|++++..+.++.++.+.+++.+++ +.+.+++.+++.. ++ |+.+.+..|+++..++.++..++.++.+.+|+.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988877 8889999998853 33 68899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 011666 194 VIPLIFFSALPM-AIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (480)
Q Consensus 194 ~~~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~ 246 (480)
++.+++.++++. ++++++++++.+.+++|+.|+++++.+++.+..+.....++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 79999999999877899999999999999998887766664
No 19
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=9.5e-21 Score=186.17 Aligned_cols=209 Identities=22% Similarity=0.272 Sum_probs=199.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011666 262 SFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNP 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~ 341 (480)
.++..|+++++++|..++++.+.....+|+.++++++ ++++++-++++++..+...+..+++.+..+.++|.+|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3568899999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHH
Q 011666 342 DQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (480)
+++++..+.+..+.++++++..+....+++++..++.+++|+.+.+.+|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hc-CCchhhHHHHHHHHHHHHHHHHHHHHccC
Q 011666 422 WANLATFYFIGMPIAAILGFK-LS-LYVKGLWIGLICGLFCQASSLLLITLRRK 473 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~a~~~~~~i~~~~~~~~~~~~~ 473 (480)
+++++.. ++|+.+++++.+. ++ +|+.|+++|+++++.+..++.++++.|++
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999996 9999999999776 45 99999999999999999999888877665
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.3e-20 Score=186.54 Aligned_cols=207 Identities=14% Similarity=0.024 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011666 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLM-PNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNP 341 (480)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~ 341 (480)
++..|++++.++|.+++++.+.+...+|+.+++++ + +++++++++++++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45778999999999999999999999999999996 5 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHH
Q 011666 342 DQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (480)
|++++..+.+..+..++++++++++.++++++..+++.|+++.+.+.+++++.+++.++..+......++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 422 WANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
+.++++. ++|+++++++...+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999985 9999999999777789999999999999999988876666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=6.5e-20 Score=182.45 Aligned_cols=207 Identities=17% Similarity=0.133 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 011666 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPD 342 (480)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 342 (480)
++.+|+++++++|.++++....+...++..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 578999999999999999999999999999999987 779999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHH
Q 011666 343 QAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVW 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (480)
+.++..+.+..+.++++++.++++.++++++..+++.|+++.+.+..++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 423 ANLATFYFIGMPIAAILGFK----LSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 423 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
.+++.. ++|+++++++... +++|+.|+++++.+++.+..++..++.+|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999986 8999999888532 468999999999999999998877766654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.83 E-value=7.3e-18 Score=170.31 Aligned_cols=206 Identities=20% Similarity=0.179 Sum_probs=187.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 119 (480)
++++..|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++..+....+..+++++..|.++|+++++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 35578899999999999999999999999998855599999999999999998873456789999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh
Q 011666 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQ----DPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIV 194 (480)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (480)
++.++.++++......++++.+++ ..+++++..++.+ ++|..+.+..++++.+++.++..+.....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999998887 8899999988755 56778889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 195 IPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
|.+++.++.+.++|+++++++++ .+|..|+++|+.+++.+..++..++.+|
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 6799999999999999999988877753
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.2e-16 Score=147.91 Aligned_cols=270 Identities=17% Similarity=0.188 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHH
Q 011666 49 VVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (480)
Q Consensus 49 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 127 (480)
.|.+.....+++...+.+++...+++| +|++++|.++...++.+++......|++++..+..++...+ +++.+++..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 578888999999999999999999999 99999999999999999885566899999999999887432 345555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011666 128 ASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAI 207 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 207 (480)
.......+.+++......+ ...++.++.. . .+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNPSLS-L---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCchHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444433333222 1233333221 1 122222222256778888999999999999999999999988
Q ss_pred HHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011666 208 HFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAF 287 (480)
Q Consensus 208 ~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 287 (480)
..++...++.. +.+..+..++..++..+..++..++.+|+.+ .+....+++..|++++++.|..++++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666664 4458889999999999988888888764432 22222236789999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011666 288 EILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNE 335 (480)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 335 (480)
..|..+++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887 489999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=5.5e-17 Score=155.54 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011666 275 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL 354 (480)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 354 (480)
|.++++....+...+++.++++++ ++++++|+.+.++..+...+..+++++..|.++++.|++|+|+.++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999987 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHH
Q 011666 355 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMP 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 434 (480)
...++++.++++.++++++.++++.|++..+.+..++++++++.++.+++.....++++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888888999999999999999999999999999999999999999986 88999
Q ss_pred HHHHHHH-Hhc-CCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 435 IAAILGF-KLS-LYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 435 l~~~l~~-~~~-~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
+++++.. ..+ +|+.|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888865 445 679999999999999998887766665
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=7.5e-16 Score=151.73 Aligned_cols=207 Identities=18% Similarity=0.163 Sum_probs=192.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCccc
Q 011666 41 DLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120 (480)
Q Consensus 41 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 120 (480)
+.+..|++++...|..++....++..++|+.+.+.+++..+++++.++.+.+++...+..++++...|.+++...++|++
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34678999999999999999999999999999999999999999999999999866888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChh
Q 011666 121 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILLH----QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVI 195 (480)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (480)
+.++.+++++.....+.++.++. ..+++++++++. .+.|..+.....+++++++.++..+...+...+.+.+|+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999987 999999998763 4677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011666 196 PLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAK 249 (480)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~ 249 (480)
.++..++++.++|++++.++.+ .+|..|.++|+.++..+..++..+.++|+.
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999988888 789999999999999999999988886443
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=1.1e-18 Score=148.15 Aligned_cols=162 Identities=25% Similarity=0.439 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011666 275 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL 354 (480)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 354 (480)
|.+++++.+.....++..++++++ ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHH
Q 011666 355 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMP 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 434 (480)
...++++.++.+.++++++.++|++|+|+.+.+.+++++..++.++.++.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011666 435 IAAI 438 (480)
Q Consensus 435 l~~~ 438 (480)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=2.5e-16 Score=158.53 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=175.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQ------L---ELAGA-TLANSWATVTGFAFMIGLSGALET 108 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 108 (480)
.+++..|+++++++|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..++ ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 456789999999999999999999999999999988 532 1 22333 3455677777 7778899999999
Q ss_pred HHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011666 109 LCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRF 187 (480)
Q Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 187 (480)
.++++.+++|+++.++..++...+...++++.+++ ..++++++.++..++ ++..++++.++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877 888899998886543 3567899999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 188 LQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
+++.||+|..++.++++.++|++++++++..+.+|+.|+++++++++.+..+...++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998873347899999999999999999988887753
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.74 E-value=2.1e-14 Score=139.27 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=191.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 119 (480)
++.+..|++.+...|..++...+++..++|+.+.+.+.+...+.+..+..+.++..-.+..++++...|.+||+..++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 44468999999999999999999999999999999999999999999999999996789999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh
Q 011666 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLH----QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIV 194 (480)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (480)
++.++..+.++.+.++.+++.++. ..+++|+++.+. .+++....+...+..+.++.++..+..++...+.+.+|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999987 999999998762 356667788889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011666 195 IPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKK 250 (480)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~ 250 (480)
|.|++..+++.++|+.+++.+.. .+|..|.++++.++.++.+.+.++..+|+..
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999977777 6788899999999999999888888865544
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=3e-18 Score=145.41 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHHHHHHHH
Q 011666 54 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITS 133 (480)
Q Consensus 54 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 133 (480)
|..+++++..+...+|..+++++|++++++++++.++..+. ..+..|+++|..+.++|++|++|+|++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 011666 134 LFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPM-AIHFGI 211 (480)
Q Consensus 134 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 211 (480)
.++++++.++ ..+.+++..+++.|++..+.+..|+++..+..++..+.....+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88899999999999999999999999999999999999999999999999999999999999 899998
Q ss_pred HHH
Q 011666 212 AYA 214 (480)
Q Consensus 212 ~~~ 214 (480)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.71 E-value=5.4e-14 Score=141.63 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=175.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 118 (480)
++++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+++...+...++....|.+++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 456788999999999999999999999999999999 89999999999999988763555566778888999886 567
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 011666 119 YRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (480)
+++.++.+++.......++++++++ ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 7889999999999999999998877 888999998776654 5678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 011666 198 IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (480)
Q Consensus 198 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~ 246 (480)
...+++..+++++..+.+.. .+|+.|+++|+.+++.+......++..
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877766666 679999999999999998888777773
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.70 E-value=9.3e-15 Score=143.72 Aligned_cols=200 Identities=13% Similarity=-0.012 Sum_probs=173.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 118 (480)
+|++..|++++++.|..+++....+....|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.++++ +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 678889999999999999999999999999999985 99999999999999977443788999999999999995 46
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 011666 119 YRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (480)
+++.++.++........++++.+++ .+++++++.++.+++ ++++.+++++++++.++............+.++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888776 788999999888765 3446778889888888887777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 011666 198 IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (480)
Q Consensus 198 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~ 246 (480)
....+...++++++++++++ .+|..|+++++.+++.+..+...+...
T Consensus 364 ~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999998 679999999999999999988776654
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.66 E-value=5.9e-13 Score=121.63 Aligned_cols=246 Identities=17% Similarity=0.236 Sum_probs=178.3
Q ss_pred HhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 011666 65 IPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL 143 (480)
Q Consensus 65 ~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (480)
.+++...+++| +|++++|.++...++..+.......|++..... ..++|+++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777889999 999999999999999998844456777776555 223455566666666655544444443332
Q ss_pred HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 011666 144 WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGF 223 (480)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~ 223 (480)
...+...+ .+++. ..++....+..+.........+.+++++|.+..........+....+...+... +.+.
T Consensus 78 ---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11122233 33322 234556667778888999999999999999999999999888875554444443 4478
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Q 011666 224 KGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELT 303 (480)
Q Consensus 224 ~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (480)
.+..++..+++.+..+......+++ .+ .. . +.+..| .++.+.|..+.+.........+.++++.+. |+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK--LR--LS-F---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cC--CC-c---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8888888888888777666544311 11 11 1 123334 799999999999999999999999999843 3899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011666 304 TSLIAMCVNTESVAY-MITYGLSAAASTRVSN 334 (480)
Q Consensus 304 ~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~ 334 (480)
+|.|+++.++..... .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 8999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.62 E-value=2.6e-13 Score=136.30 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCccc
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 120 (480)
++..|++++.++|...+.+...+.+.+|+.++++ +|++++|.|+.++.+.... ..+...++....|.+++...++|++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 5789999999999999999999999999999999 9999999999888888887 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 011666 121 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIF 199 (480)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (480)
+.++..++.......++++..++ ..++++++..+.+++. ..+...+.+.++..++..+.......+++.|+.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 99999999999999999999987 8889999987766542 23777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHH
Q 011666 200 FSALPMAIHFGIAYAFVYLTSLGFKGASLAASVS 233 (480)
Q Consensus 200 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 233 (480)
.+.++.++|++++++++. .+|..|++.++ .+
T Consensus 366 ~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999998 77999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.29 E-value=1.4e-08 Score=101.10 Aligned_cols=421 Identities=14% Similarity=-0.008 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHH
Q 011666 50 VFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWAT-VTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (480)
Q Consensus 50 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 127 (480)
+.+.-.++.+++..+.+++-+.++-| ++++.+|..++=..+.. -.....=.++..+.++.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45667788899999999987777777 99999998754444332 21134445666665553322211112223333323
Q ss_pred HHHHHHHHHHHHHHHH-H-HhhHHH----HHHcC-CChH---HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHcCC
Q 011666 128 ASWITSLFFSIIISFL-W-IYTEPI----LILLH-QDPS---ISKQAALYMKYLIPGLVAYGV----IQNILRFLQTQSI 193 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~-~-~~~~~i----~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~~ 193 (480)
.......++++++..+ + ....+. ..+.. ..++ ..+.....+.+...+.+...+ ....+..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 3333333333322222 1 111111 11111 1111 111222223333333333333 3333444555556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-cCCcc-----ch-hHHHHHHHHHHHHHHHHHHHH--hccc---ccccccCCCh-
Q 011666 194 VIPLIFFSALPMAIHFGIAYAFVYL-TSLGF-----KG-ASLAASVSLWISMLMLVTYVL--CAKK---FEHTWEGFSF- 260 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~li~~-~~~g~-----~g-~a~a~~i~~~i~~~~~~~~~~--~~~~---~~~~~~~~~~- 260 (480)
.+.-........+++..+....... .+++. .+ +.++..+++....+....... .... .+...++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 6666666666666665554443221 01111 11 234455555555443322111 1111 1111111111
Q ss_pred --hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 011666 261 --ESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGL--MPNSELTTSLIAMCVNTESVA-YMITYGLSAAASTRVSNE 335 (480)
Q Consensus 261 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~ 335 (480)
.....-+++.+.........+.-.+..+-+.+++.. +.+ .++=|.|++++++.++. -.+..++-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 001123678888888888888888888889888888 664 77889999999998875 456678888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011666 336 LGAGNP---------DQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGV 406 (480)
Q Consensus 336 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 406 (480)
..+++. ++..+.....++....+++.+...-...++.+.+++.++...-..+...++.++...++.+++++
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 44566677777777777766666666666777777765443333467889999999999999999
Q ss_pred HHHHhhccCchhhHHHHHHHHH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 407 LSGVARGCGWQHLAVWANLATF--YFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 407 ~~~~l~~~g~~~~~~~~~~~~~--~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
...+.++...++.....+-.-. ..+.+..++++... ++|..|.-+|-.+.+.++-+....+++|.
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988776555332211 24556677777554 68999999999999999998887777654
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.26 E-value=6.1e-10 Score=109.17 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011666 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESV-AYMITYGLSAAASTRVSNELGAGNP 341 (480)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~g~~~~ 341 (480)
+...|++.+++.|..+....+.....+...+.+++| +.++++.++++...+. .+.+..++..+.-+.++|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 577899999999999999999999999999999998 6699999999888766 5677789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHH
Q 011666 342 DQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (480)
+......+++........++.+.. +.+.+++...+..|+++...+..+.++.....+.......+...+++.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999888888665 5566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 422 WANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
++..... .+++++++++.+.+++|..|+.++..+++.+.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999986 9999999999999999999999999999999998877666543
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2e-06 Score=80.33 Aligned_cols=420 Identities=14% Similarity=0.007 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCccc--
Q 011666 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR-- 120 (480)
Q Consensus 44 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~-- 120 (480)
....-.+.+...+..+++..+.+++.+.++-| ++++.+|..++-..+..-. ..-++-=..+......|..+.|
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT----iLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST----ILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH----HHHhhHHHHHHHhccCCCCCCccH
Confidence 44555667777788888888888876666666 9999999887655554321 1112222223333333433323
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 011666 121 -MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSI--SKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (480)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (480)
+..+..+.+.-+..+..+.+.-+ ++.+.....+. .+.-..-+.+...+...-.+...+.-..|...+.+.-
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~------wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYF------WLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHH------HHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44444444444444444433322 11211111111 1111112223333333333333333444444455555
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHhccc----------ccccccCC-Chh-hH
Q 011666 198 IFFSALPMAIH-FGIAYAFVYLT-SLGFKGASLAASVSLWISMLMLVTYVLCAKK----------FEHTWEGF-SFE-SF 263 (480)
Q Consensus 198 ~~~~~~~~~~~-i~~~~~li~~~-~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~----------~~~~~~~~-~~~-~~ 263 (480)
.+..-+...+. +..-..++.+. .+++...|+|.....+.-.+...++..+.+. .....++. .++ ..
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 55555554444 22222233222 3455555555555444443322222222222 00111110 000 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCh
Q 011666 264 SFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPN-SELTTSLIAMCVNTESVA-YMITYGLSAAASTRVSNELGAGNP 341 (480)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~~g~~~~ 341 (480)
..=++..+.........+.-++...-+.++++.... .-.+=|.|.+.++..++. -++..++-.......++...+++.
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~q 315 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQ 315 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccch
Confidence 011234444444444555555555545555542110 022446888888877664 455668888888888888877666
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchh
Q 011666 342 DQAKNA---MAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQH 418 (480)
Q Consensus 342 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 418 (480)
|+.|+. ..+.++....+++.+...-...++.+..++++++-.-..+...+++++...++.+++++..++..+.++.+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 665554 44445555555544444444455566776665432223356789999999999999999999999988776
Q ss_pred hHHH---HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCccc
Q 011666 419 LAVW---ANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK 476 (480)
Q Consensus 419 ~~~~---~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~ 476 (480)
.... .-++.. ++.+.+++++... +|..|.-+|-.+.+.++-+....++++..++.
T Consensus 396 qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 396 QIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred HHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5443 222322 5557788888554 68899999998888888877766666554433
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.05 E-value=1e-06 Score=78.73 Aligned_cols=262 Identities=10% Similarity=0.005 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCc
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLG---QLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 118 (480)
...++++.++-.|..++.....+...+.+.-++|-. .+.+++|+++.++.-++ ..+...+-+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 346788999999999999999999888888888732 25599999999998888 777776666655544 333
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HH-HHhhHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChh
Q 011666 119 YRMLGIYLQASWITSLFFSIIIS-FL-WIYTEPIL-ILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVI 195 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (480)
+++. +...-......+...... +. -.+...++ +.++.++++.+.+...+.++.+..++.++....++++.-.+++.
T Consensus 81 rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 3322 222222222222222212 22 33344444 46688999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcc-chhH---HHHHHHHHHHHHHH-HHHHHhcccccccccCCChhhHHHHHHHH
Q 011666 196 PLIFFSALPMAIHFGIAYAFVYLTSLGF-KGAS---LAASVSLWISMLML-VTYVLCAKKFEHTWEGFSFESFSFILTIL 270 (480)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~li~~~~~g~-~g~a---~a~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (480)
.....++......+++..+++.. +... ..+. .+...+..+.+.+. +.|...-.+.+.......+.+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77777666655555555555532 1111 1111 22222222222111 11211111212222222233346789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhc-CCch---hHHHHHHHHHH
Q 011666 271 KLALPSAAMVCLEYWAFEILVFLAGL-MPNS---ELTTSLIAMCV 311 (480)
Q Consensus 271 ~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~~~~~~~ 311 (480)
++.+|.+.....+..+-.+.+.+++| ++++ +++++...+.+
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~y 283 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATY 283 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhcccc
Confidence 99999999999999999999999998 5432 24555544333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.53 E-value=1.3e-05 Score=66.31 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=73.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 168 MKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
+++.+++.++..+.....+.+++.||+|..+..++++.++|+++++.+++ ++|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999988 8899999999999999999988888864
Q ss_pred c
Q 011666 248 A 248 (480)
Q Consensus 248 ~ 248 (480)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.36 E-value=0.0001 Score=73.93 Aligned_cols=201 Identities=10% Similarity=0.118 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc---
Q 011666 46 KNQVVFSLPMILANVFYYAIPLVSVMSAGH--L-GQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY--- 119 (480)
Q Consensus 46 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~--- 119 (480)
+++++.......+++...+.+--|.+++.. + ..++.|.|++++.+-++..=.+..-+--+.-.+.++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 567778888889999999999999999998 4 5789999999999988875667777888877888887654433
Q ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 011666 120 ------RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQS 192 (480)
Q Consensus 120 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 192 (480)
++..+.+...+.+...+++++..+ ...++.++.+++++.=..+.+...+++.+...|+.+++.+...+.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 345567777778888888777766 7777888887754332233456778999999999999999999999888
Q ss_pred ChhHH---HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 193 IVIPL---IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 193 ~~~~~---~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
..+.. .....+..++.+..+++++.. ++|..|..+|.++...+..+....+.++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 344455566778888988886 7899999999999999999998888854
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.21 E-value=9.4e-06 Score=67.10 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011666 391 TPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITL 470 (480)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~ 470 (480)
+++++++.++.++....+..+++.||+|..++.+++.. ++++++++++ ++++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999986 9999999999 77899999999999999999988888887
Q ss_pred cc
Q 011666 471 RR 472 (480)
Q Consensus 471 ~~ 472 (480)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.20 E-value=0.00073 Score=62.13 Aligned_cols=187 Identities=18% Similarity=0.191 Sum_probs=113.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011666 271 KLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMI-TYGLSAAASTRVSNELGAGNPDQAKNAMA 349 (480)
Q Consensus 271 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 349 (480)
|-+......+....+...+...+..+.. |+++.|.|+....+.++...+ ..++.++..-..++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3344455555555554444444444443 389999999999999888776 458888888887776542 233344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHH
Q 011666 350 VTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFY 429 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 429 (480)
.......+..+.......+.. .+..++ . . ..+........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGNPS-L-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCCch-H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 443333333332222222222 333332 1 1 11222222222578888889999999999999999888876
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 430 FIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 430 ~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
+..+.+.+.+... ..+..+...+..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444333 3358888999999998888777766664
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.00 E-value=0.0033 Score=57.05 Aligned_cols=162 Identities=16% Similarity=0.248 Sum_probs=106.0
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011666 291 VFLAGLMPNSELTTSLIAMCVNTESVAYMIT-YGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFG 369 (480)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
..+...++ +++.|.|+....+..+...+. .++.+...- ..++|.++.++..+.......+..+...+.....
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455 889999999999988877764 355444433 2345666777776666655554444443332222
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 011666 370 HNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKG 449 (480)
Q Consensus 370 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g 449 (480)
. ..+ ++++ ...++.+.++..++..........+++.+|.+.......... ...+.+...+... +.+..+
T Consensus 82 ~----~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 150 (251)
T PF13440_consen 82 A----YFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWS 150 (251)
T ss_pred H----HHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHH
Confidence 2 233 3332 234456677778888999999999999999999999988876 5444343333322 338888
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011666 450 LWIGLICGLFCQASSLLLITL 470 (480)
Q Consensus 450 ~~~a~~~~~~i~~~~~~~~~~ 470 (480)
..++..++..+..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999988998888776555433
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.0011 Score=62.57 Aligned_cols=199 Identities=9% Similarity=0.065 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc---c
Q 011666 47 NQVVFSLPMILANVFYYAIPLVSVMSAGH---LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY---R 120 (480)
Q Consensus 47 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~---~ 120 (480)
+..+.......+.+...+.+=-|.++++- +.-++-|.|.+.+.+-++..=.+...+.-..-.+.+|...++++ +
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 34444555555666666666777777773 55667788888877766654555556666666666666655444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH-
Q 011666 121 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI- 198 (480)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 198 (480)
++.++....+.....++++.+.. ...+++.+.+++++.-....+...+++.+..+++..++.+..+++.+....+..-
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 55566677777888888776665 7777788887765433233345679999999999999999999998877654433
Q ss_pred --HHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 199 --FFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 199 --~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
...++.++..++.+++++. .+|..|..+|.++...+..+....+.++
T Consensus 400 ~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred cccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777888999998 5688999999999988888877776653
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.57 E-value=0.052 Score=49.37 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011666 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGL-MPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNP 341 (480)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~ 341 (480)
..++.++.++-.|+++++....++-++.+.-+++ ..+..+.+|+|+++..+.-++..+...+-+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 4577899999999999999999998888877776 34334569999999999999999988888877776543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhh-hhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhh
Q 011666 342 DQAKNAMAVTVKLSVLLALV-VVLALGFGHN-IWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHL 419 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 419 (480)
+ -++........+.+.... ..+....++. .+.+++.-|+++.+.+...+.++....+++++....++++.=..++..
T Consensus 82 s-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 S-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2 222333332222222222 1122222233 345566678899999999999999999999999999988874455555
Q ss_pred HHHHHHHH
Q 011666 420 AVWANLAT 427 (480)
Q Consensus 420 ~~~~~~~~ 427 (480)
...-++..
T Consensus 161 V~~aSI~~ 168 (345)
T PF07260_consen 161 VGSASIAD 168 (345)
T ss_pred eehHHHHH
Confidence 54444443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.77 E-value=0.47 Score=44.27 Aligned_cols=343 Identities=12% Similarity=0.071 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHH
Q 011666 93 VTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLI 172 (480)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 172 (480)
++.+.+..|+....++++|...=++|.+++...+.....+....+..+..+ +-...++.... |=....
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHHH
Confidence 334666788889999999988877777766554443333333332222211 11112222111 111222
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 011666 173 PGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFE 252 (480)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~ 252 (480)
.........-+...++.+.++.|.....-.++.++.+.+...+-. .++.|.-++..++..+.......+..+.-+-+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 233334455556677888899998888888888888888766654 48889999999999888887777764332211
Q ss_pred ccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH------HHHHHHHHHHHHHH-----
Q 011666 253 HTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLI------AMCVNTESVAYMIT----- 321 (480)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~i~~~~~~~~----- 321 (480)
.+ ..++.. ...+--....+..+...++-.+++++.=.-++|++-.+.+ .+..-.......|.
T Consensus 216 ~~-i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 RR-IGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred cc-cceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 11 111111 1111112233344444555444544432222222222211 11111111111111
Q ss_pred HHHHHHHHHHHHHhh----cCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHH
Q 011666 322 YGLSAAASTRVSNEL----GAG-------NPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASL 390 (480)
Q Consensus 322 ~~i~~~~~~~~~~~~----g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 390 (480)
..+-+...+.--+.+ |.+ +.++.....+..+.-..-+-..+++.++++++.+...++-++ ...+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 122233333221111 222 233334445555555556667888889999999999887543 23444
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHH
Q 011666 391 TPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFK-LSLYVKGLWIGLICGLFCQA 462 (480)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-~~~g~~g~~~a~~~~~~i~~ 462 (480)
.++-..+.-.+.....+-.+..-..+-+..+..+... ...|-.+.++.... |.+--.|...|..++-.+..
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 5555555555555555555555566666666655554 35666666655332 33444455555444444433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.62 E-value=46 Score=31.74 Aligned_cols=135 Identities=20% Similarity=0.128 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHH
Q 011666 320 ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSIT 399 (480)
Q Consensus 320 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~ 399 (480)
+..+++....-.+|+.+=++|.+++...+.-...+....+..++..++. ..++. ... +=...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~---si~--yk~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQY---SIV--YKILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCch---hHH--HHHHHHHHHH
Confidence 3446666677777887777777777777766666666555555432211 11222 112 2223445566
Q ss_pred HHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHc
Q 011666 400 LDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLR 471 (480)
Q Consensus 400 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~ 471 (480)
..+...+...++.+.+|-+...+.-.++. .+...++.++-. .+..|..++..++..+..+....+..|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67777788899999999998888777764 777777666643 588999999999998887776555544
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=62.41 E-value=54 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011666 321 TYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLA 359 (480)
Q Consensus 321 ~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (480)
..-++-.....+.+.+.+||++++++.-+++.+++.+-.
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 334455555677888889999999999999988876433
No 48
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=50.20 E-value=2.8e+02 Score=27.80 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cC--hhHHHHHHHHHHHHHHH
Q 011666 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LG--QLELAGATLANSWATVT 94 (480)
Q Consensus 44 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg--~~~~~~~~~~~~~~~~~ 94 (480)
..|+-+.++.+-+.+++...........+... .| +...|..-...++...+
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 36678889999999999888888887777777 55 44445444455555544
No 49
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=46.27 E-value=47 Score=32.33 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011666 43 EEAKNQVVFSLPMILANVFYYAIP 66 (480)
Q Consensus 43 ~~~~~~~~~~~p~~~~~~~~~~~~ 66 (480)
+..|.++++.+|..+.-+.+.+.+
T Consensus 240 ~~~k~Ll~ymiPL~lVY~aEY~In 263 (402)
T PF02487_consen 240 KRLKPLLWYMIPLFLVYFAEYFIN 263 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999998888877653
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=45.01 E-value=3e+02 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH-HcCCC
Q 011666 118 HYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILI-LLHQD 157 (480)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~ 157 (480)
++++.+++++.+...+.+...+..++ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999988776 666667665 44444
No 51
>PRK03612 spermidine synthase; Provisional
Probab=42.34 E-value=3.9e+02 Score=27.27 Aligned_cols=44 Identities=9% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHHHHHHHH-HHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 011666 200 FSALPMAIH-FGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYV 245 (480)
Q Consensus 200 ~~~~~~~~~-i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~ 245 (480)
.+.+++++. ++..+++++ .+|..+..+....-++...++..+..
T Consensus 153 ~ntlGa~~G~l~~~~vLlp--~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLP--RLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HHhHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 444555555 66777666655555555554444444
No 52
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=39.97 E-value=1e+02 Score=28.88 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------hhHHHHHHHHHHHHHHHHHHHHccCc
Q 011666 418 HLAVWANLATFYFIGMPIAAILGFKLSLYVK--------GLWIGLICGLFCQASSLLLITLRRKW 474 (480)
Q Consensus 418 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~--------g~~~a~~~~~~i~~~~~~~~~~~~~~ 474 (480)
+..-..++++ .+.+|+.++-+.+ ++... ..+.......++..+..+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344445554 4556776665533 22221 23333444444445567778888888
No 53
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=36.64 E-value=2.6e+02 Score=27.50 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011666 273 ALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTV 352 (480)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 352 (480)
+-|..++.+.--++-..-.++.....+++.+++ -+.-.+..|++.++...+++.+|+.+..+-+|...=++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 455555555444444444566665554433333 33455677999999999999999998888877766555
Q ss_pred HHHH
Q 011666 353 KLSV 356 (480)
Q Consensus 353 ~~~~ 356 (480)
...+
T Consensus 450 Afiv 453 (510)
T KOG2468|consen 450 AFIV 453 (510)
T ss_pred HHHH
Confidence 4433
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.77 E-value=2.5e+02 Score=24.66 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 011666 118 HYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQ 156 (480)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (480)
++++..+.+..++...+++-++++++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 445555566666665555555555556666777777663
No 55
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=35.00 E-value=3.1e+02 Score=27.41 Aligned_cols=52 Identities=8% Similarity=-0.089 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 011666 61 FYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQG 113 (480)
Q Consensus 61 ~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 113 (480)
+..+++..|...+...+++.-.++++..+-..++ .....-.-....|+++..
T Consensus 40 ~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sPl~gyL 91 (493)
T KOG1330|consen 40 LVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASPLFGYL 91 (493)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHHHHHHH
Confidence 4556677788888776666666666666655554 333232333344555544
No 56
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.82 E-value=1.5e+02 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHHHHHHHHHHHHccCc
Q 011666 422 WANLATFYFIGMPIAAILGFKLSLYV--------KGLWIGLICGLFCQASSLLLITLRRKW 474 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~~~~g~--------~g~~~a~~~~~~i~~~~~~~~~~~~~~ 474 (480)
..++++ .+.+|+.++-+.+ ++.. .-.++...+..++..+..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344443 4445777665533 2221 123333444444555566778888888
No 57
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=31.75 E-value=5.5e+02 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=19.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 444 SLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 444 ~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
.+|..-+|.-.....++........++|.
T Consensus 450 ~~g~~~v~~~~~~~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 450 LSGPRPVWIILLCLLLVVAALWIVFLKRL 478 (488)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36888777777777777666666655554
No 58
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.46 E-value=2.7e+02 Score=22.26 Aligned_cols=96 Identities=7% Similarity=-0.035 Sum_probs=51.7
Q ss_pred HHhhhhhhcccccCc-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011666 366 LGFGHNIWAGFFSNS-PEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLS 444 (480)
Q Consensus 366 ~~~~~~~i~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~ 444 (480)
.++...-+.++++-+ +.......-.+-...++.++..+...+...+.-.+-++..... -...+.....++..+.-+
T Consensus 21 ~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~---l~~~id~~~t~~~i~~aD 97 (132)
T PF14184_consen 21 YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFIL---LAFIIDFLFTWITIYTAD 97 (132)
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344445566666532 2223333344455666777777777776666655333333322 223555666666665544
Q ss_pred CCchhhHHHHHHHHHHHHHH
Q 011666 445 LYVKGLWIGLICGLFCQASS 464 (480)
Q Consensus 445 ~g~~g~~~a~~~~~~i~~~~ 464 (480)
.=..+++......-++..+.
T Consensus 98 ~~m~sI~is~~~e~i~al~~ 117 (132)
T PF14184_consen 98 ELMESISISTLSEIIFALLF 117 (132)
T ss_pred HHhcceeeCcHHHHHHHHHH
Confidence 45667766666555555443
No 59
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=26.83 E-value=2.5e+02 Score=26.39 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------hhHHHHHHHHHHHHHHHHHHHHccCc
Q 011666 419 LAVWANLATFYFIGMPIAAILGFKLSLYVK--------GLWIGLICGLFCQASSLLLITLRRKW 474 (480)
Q Consensus 419 ~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~--------g~~~a~~~~~~i~~~~~~~~~~~~~~ 474 (480)
..-..++++ .+.+|..++.+.+ ++... -.++.......+..+..+++++|++|
T Consensus 255 ~mk~lTv~s--~if~pptliagiy-GMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 255 IIKIFSVVS--VVFLPPTLVASSY-GMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhc-ccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333344443 4556666665432 22221 12333333444444456777888888
No 60
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.93 E-value=2e+02 Score=27.12 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--------h-hhHHHHHHHHHHHHHHHHHHHHccCc
Q 011666 422 WANLATFYFIGMPIAAILGFKLSLYV--------K-GLWIGLICGLFCQASSLLLITLRRKW 474 (480)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~~~~g~--------~-g~~~a~~~~~~i~~~~~~~~~~~~~~ 474 (480)
..++++ .+.+|..++.+.+ ++.. . |.|++. +..++.+++..++++|++|
T Consensus 264 ~LTi~s--~iflPpTlIagiy-GMNf~~mPel~~~~Gy~~~l-~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 264 ILTIVS--TIFLPPTLITGFY-GMNFKGMPELDWPYGYPIAL-ILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHH--HHHHhhHHHHccc-ccCCCCCcCCCCcccHHHHH-HHHHHHHHHHHHHHHhcCc
Confidence 344443 4556666666532 2222 2 444444 4444555567778888888
No 61
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=25.49 E-value=3e+02 Score=23.20 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 011666 223 FKGASLAASVSLWISMLMLVTYVL 246 (480)
Q Consensus 223 ~~g~a~a~~i~~~i~~~~~~~~~~ 246 (480)
..|...++.+++++..++...|..
T Consensus 136 ~s~s~~~~ti~yIiL~iLf~~Ya~ 159 (189)
T PF05313_consen 136 VSGSSGAYTISYIILAILFCIYAF 159 (189)
T ss_pred hhHhHHHHHHHHHHHHHHHHHhee
Confidence 345667778888888777776664
No 62
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.72 E-value=8.1e+02 Score=25.56 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=32.1
Q ss_pred HHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHH
Q 011666 364 LALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLA 426 (480)
Q Consensus 364 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 426 (480)
....+++..+..+|++|+.-.............+..+-+ .+...++.-.++.|+.++.+.+
T Consensus 328 s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~--~i~g~l~~~ir~~Kw~li~~~~ 388 (599)
T PF06609_consen 328 SVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGA--VILGLLFSKIRHIKWQLIFGSV 388 (599)
T ss_pred HHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHH--HHHHHHHHHccchhHHHHHHHH
Confidence 344577888888898775322222222222333322221 2344555566788888766644
No 63
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=23.92 E-value=4.3e+02 Score=22.08 Aligned_cols=111 Identities=7% Similarity=-0.082 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCch--hhHHHHHHHHHHHHHHHHH
Q 011666 359 ALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQ--HLAVWANLATFYFIGMPIA 436 (480)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~i~l~ 436 (480)
-..+++....||+.+.....+.+.. .+....|++ +-.+.++..++-+.++...|. ++.......-. .+.....
T Consensus 64 f~~~~~m~L~FP~~~~~~vf~~~~~--~s~~~vRly--GgAL~s~aLi~w~~l~t~ek~iIrwtLL~ea~y~-~vq~~vt 138 (179)
T PF14936_consen 64 FTLVALMALVFPDQLYDHVFEEEPV--TSKLPVRLY--GGALLSIALIFWNALYTAEKAIIRWTLLSEACYF-GVQFLVT 138 (179)
T ss_pred HHHHHHHHHHccHHHHHhhcccccc--cceeeehhh--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3446677788899877766543321 233334443 344455666666666666544 33333333321 2222111
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCcc
Q 011666 437 AILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWT 475 (480)
Q Consensus 437 ~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~ 475 (480)
. ......--....+.-..++..+..++..++++...++
T Consensus 139 t-~t~~e~~~~s~~~~llLisr~lf~liS~yyYy~~gr~ 176 (179)
T PF14936_consen 139 T-ATLAEMGWLSNAALLLLISRLLFALISMYYYYQLGRR 176 (179)
T ss_pred H-HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 1111111233444556666766666666666554433
No 64
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=23.90 E-value=7.4e+02 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAI 65 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~ 65 (480)
+|.+.+|.++|-++|..+..++-..-
T Consensus 11 ld~~~~k~~~k~~i~~~i~~~l~~i~ 36 (459)
T PF10337_consen 11 LDRRSLKIMFKCWIAPWIALILCQIP 36 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhch
Confidence 58899999999999999888776543
No 65
>PF14184 YrvL: Regulatory protein YrvL
Probab=23.08 E-value=4e+02 Score=21.35 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcCCChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011666 129 SWITSLFFSIIISFLWIYTEPILILLHQDPS-ISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAI 207 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 207 (480)
.+.......++.+...+...-+++++|.+=+ ......-.+....++.++..+..++...+.-.+-++.... .....+
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~i 84 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFII 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHH
Confidence 3334444444444445555667778776422 2233333444556677777777777766666643443332 344556
Q ss_pred HHHHHHHHhhhc
Q 011666 208 HFGIAYAFVYLT 219 (480)
Q Consensus 208 ~i~~~~~li~~~ 219 (480)
...+++..++.-
T Consensus 85 d~~~t~~~i~~a 96 (132)
T PF14184_consen 85 DFLFTWITIYTA 96 (132)
T ss_pred HHHHHHHHHHHH
Confidence 777777777753
No 66
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=4.3e+02 Score=22.12 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=13.3
Q ss_pred cccchhhhhhcccHHHHHHHHHHHH
Q 011666 29 TSSRRRWWKRVLDLEEAKNQVVFSL 53 (480)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (480)
.+.-++..|++++.+.+-...|-..
T Consensus 104 ~dEFrPFIRRLPEFKFW~s~~ka~~ 128 (188)
T KOG1688|consen 104 SDEFRPFIRRLPEFKFWYSSTKATL 128 (188)
T ss_pred ccccchHHHcCchhHHHHHHHHHHH
Confidence 3344555666666665555544433
Done!