Query 011666
Match_columns 480
No_of_seqs 270 out of 1902
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1E-49 3.5E-54 396.9 36.6 431 42-475 8-449 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.4E-20 8.2E-25 185.0 20.6 207 40-247 232-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.5 9.5 0.00033 36.1 37.6 27 443-469 408-434 (451)
4 3o7q_A L-fucose-proton symport 80.3 38 0.0013 31.6 31.7 38 48-85 28-67 (438)
5 4aps_A DI-OR tripeptide H+ sym 53.9 1.5E+02 0.0051 28.0 26.1 50 416-466 420-469 (491)
6 4ev6_A Magnesium transport pro 41.7 56 0.0019 29.7 6.9 51 421-474 280-338 (339)
7 2jwa_A Receptor tyrosine-prote 34.2 51 0.0017 19.7 3.4 16 461-476 27-42 (44)
8 2k1k_A Ephrin type-A receptor 24.0 71 0.0024 18.3 2.7 11 225-235 15-25 (38)
9 2ks1_B Epidermal growth factor 23.6 1.2E+02 0.0042 18.0 4.1 9 238-246 28-36 (44)
10 2l2t_A Receptor tyrosine-prote 23.3 1.2E+02 0.0041 18.0 3.7 9 466-474 31-39 (44)
11 1pw4_A Glycerol-3-phosphate tr 21.6 4.7E+02 0.016 23.9 18.5 28 48-75 254-281 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1e-49 Score=396.89 Aligned_cols=431 Identities=23% Similarity=0.349 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (480)
Q Consensus 42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 121 (480)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|+++
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~ 86 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHK 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 46889999999999999999999999999999999999999999999998887 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011666 122 LGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS 201 (480)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 201 (480)
.++.+++++.+..+++++++++..+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.||++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (460)
T 3mkt_A 87 IPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG 166 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999877667788888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHHHHHHHHHHhH
Q 011666 202 ALPMAIHFGIAYAFVYL-T---SLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHT--WEGFSFESFSFILTILKLALP 275 (480)
Q Consensus 202 ~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p 275 (480)
+++.++|+++++++++. + ++|+.|+++|+.+++.+..++..++.+++++.+.. ++++.+.+++..|+++++++|
T Consensus 167 ~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 246 (460)
T 3mkt_A 167 FIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhH
Confidence 99999999999999985 2 69999999999999999999988888665543221 122223456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011666 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLS 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 355 (480)
.+++...+.+...+++.+++++| ++++++|++++++.++..++..+++++..|.+++++|+||.++.++..+++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 324 (460)
T 3mkt_A 247 VAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTG 324 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHH
Q 011666 356 VLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPI 435 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 435 (480)
..+++++++++.++++++..+|.+|+++.+.+..++++++++.++.+++....+++++.||++.+++.++++.|++++|+
T Consensus 325 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 404 (460)
T 3mkt_A 325 LATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPT 404 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHH----hc-CCchhhHHHHHHHHHHHHHHHHHHHHccCcc
Q 011666 436 AAILGFK----LS-LYVKGLWIGLICGLFCQASSLLLITLRRKWT 475 (480)
Q Consensus 436 ~~~l~~~----~~-~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~ 475 (480)
++++... ++ +|..|+|+++.+++++..++..++++|+.++
T Consensus 405 ~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 449 (460)
T 3mkt_A 405 GYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 (460)
T ss_dssp HHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred HHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999765 55 9999999999999999998877776665443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.4e-20 Score=184.99 Aligned_cols=207 Identities=17% Similarity=0.195 Sum_probs=193.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcc
Q 011666 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (480)
Q Consensus 40 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 119 (480)
++++..|++++.++|..++++...+...+|+.+++++|++++|+++++.++.++. ..+..+++++..|.+++++|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4556788999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 011666 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (480)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (480)
+++++..+.+..+...++++++++ ..+++++..++..|++..+.+..++++.+++.++.++..+..+++++.||+|.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999999887 8889999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHhhh----cC-CccchhHHHHHHHHHHHHHHHHHHHHh
Q 011666 199 FFSALPM-AIHFGIAYAFVYL----TS-LGFKGASLAASVSLWISMLMLVTYVLC 247 (480)
Q Consensus 199 ~~~~~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~ 247 (480)
+.++++. ++++++++++.+. ++ +|+.|+++|+.+++.+..++..++.+|
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 8999999999985 55 899999999999999998877666643
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.51 E-value=9.5 Score=36.08 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=16.3
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHH
Q 011666 443 LSLYVKGLWIGLICGLFCQASSLLLIT 469 (480)
Q Consensus 443 ~~~g~~g~~~a~~~~~~i~~~~~~~~~ 469 (480)
...|....++...+..++..++.....
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777766666666665544443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=80.34 E-value=38 Score=31.62 Aligned_cols=38 Identities=5% Similarity=-0.106 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhccC--hhHHHHHH
Q 011666 48 QVVFSLPMILANVFYYAIPLVSVMSAGHLG--QLELAGAT 85 (480)
Q Consensus 48 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~ 85 (480)
+.....-.+...............+..++| +.+.+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333333344444444444444444444444 55554443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=53.85 E-value=1.5e+02 Score=28.02 Aligned_cols=50 Identities=8% Similarity=-0.116 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Q 011666 416 WQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLL 466 (480)
Q Consensus 416 ~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~i~~~~~~ 466 (480)
+.......+.... +.......+.....+.+....+........+..++.+
T Consensus 420 ~g~~~g~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 420 NSQMMSMWFLSSS-VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp SSSSTHHHHHHHH-HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3443444444332 3333333333333344555555555554444444433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=41.67 E-value=56 Score=29.71 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHHHHHHHHHHHHccCc
Q 011666 421 VWANLATFYFIGMPIAAILGFKLSLYV--------KGLWIGLICGLFCQASSLLLITLRRKW 474 (480)
Q Consensus 421 ~~~~~~~~~~~~i~l~~~l~~~~~~g~--------~g~~~a~~~~~~i~~~~~~~~~~~~~~ 474 (480)
-..++++ .+.+|+.++-+.+ ++.. ...++......++..+..+++++|++|
T Consensus 280 k~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 280 KILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444443 5566777776543 2222 222333444455556667788899999
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.24 E-value=51 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=7.7
Q ss_pred HHHHHHHHHHccCccc
Q 011666 461 QASSLLLITLRRKWTK 476 (480)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (480)
..+....+++|++.++
T Consensus 27 ~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 27 LGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHhheehhhhhc
Confidence 3334455555555444
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.03 E-value=71 Score=18.32 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q 011666 225 GASLAASVSLW 235 (480)
Q Consensus 225 g~a~a~~i~~~ 235 (480)
|+.++.+.+-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 33444443333
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.65 E-value=1.2e+02 Score=17.99 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 011666 238 MLMLVTYVL 246 (480)
Q Consensus 238 ~~~~~~~~~ 246 (480)
.+..+++.+
T Consensus 28 ~~~~~~~~R 36 (44)
T 2ks1_B 28 ALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 333334443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.25 E-value=1.2e+02 Score=18.04 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=3.6
Q ss_pred HHHHHccCc
Q 011666 466 LLITLRRKW 474 (480)
Q Consensus 466 ~~~~~~~~~ 474 (480)
+++++|++.
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 334444433
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=21.58 E-value=4.7e+02 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 011666 48 QVVFSLPMILANVFYYAIPLVSVMSAGH 75 (480)
Q Consensus 48 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~ 75 (480)
++...+..++..............++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333334444444
Done!