Query 011666
Match_columns 480
No_of_seqs 270 out of 1902
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 12:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.2 37 0.0027 29.2 19.6 27 220-246 406-432 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 44.2 90 0.0065 26.5 40.1 31 442-472 404-434 (447)
3 d2iuba2 f.17.3.1 (A:286-349) M 8.0 1.4E+02 0.01 17.5 2.9 10 430-439 14-23 (64)
4 d1ppjd2 f.23.11.1 (D:196-241) 5.2 1.7E+02 0.013 16.1 1.8 13 464-476 22-34 (46)
5 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.8 6.8E+02 0.05 19.3 9.7 38 331-368 184-221 (290)
6 d3dhwa1 f.58.1.1 (A:6-208) D-m 4.3 6.3E+02 0.046 18.1 5.7 36 44-79 129-165 (203)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 3.5 2.7E+02 0.019 17.7 2.0 18 266-283 61-78 (91)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.2 9.7E+02 0.07 18.4 6.6 15 364-378 93-107 (261)
9 d1m56d_ f.23.8.1 (D:) Bacteria 2.9 4.5E+02 0.033 13.9 4.2 25 336-360 4-28 (42)
10 d1q90b_ f.21.1.2 (B:) Cytochro 2.9 9.6E+02 0.07 17.8 6.2 25 394-418 117-141 (212)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.18 E-value=37 Score=29.24 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=14.2
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 011666 220 SLGFKGASLAASVSLWISMLMLVTYVL 246 (480)
Q Consensus 220 ~~g~~g~a~a~~i~~~i~~~~~~~~~~ 246 (480)
..|..+..+......++..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655555555555555554444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=44.21 E-value=90 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=19.0
Q ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHHHHcc
Q 011666 442 KLSLYVKGLWIGLICGLFCQASSLLLITLRR 472 (480)
Q Consensus 442 ~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~ 472 (480)
...+|..+.++......++..++......++
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457877777777666666665555444433
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.03 E-value=1.4e+02 Score=17.52 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 011666 430 FIGMPIAAIL 439 (480)
Q Consensus 430 ~~~i~l~~~l 439 (480)
.+.+|++++-
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.16 E-value=1.7e+02 Score=16.11 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=7.9
Q ss_pred HHHHHHHccCccc
Q 011666 464 SLLLITLRRKWTK 476 (480)
Q Consensus 464 ~~~~~~~~~~~~~ 476 (480)
...++.+|.+|..
T Consensus 22 ~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 22 PLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 4556667777743
No 5
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=6.8e+02 Score=19.25 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=26.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011666 331 RVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGF 368 (480)
Q Consensus 331 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
..++..|+++.+..++...-..+=+...+...+.....
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~ 221 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI 221 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhc
Confidence 34677888888888888777777777666655554433
No 6
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=4.28 E-value=6.3e+02 Score=18.08 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cChh
Q 011666 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQL 79 (480)
Q Consensus 44 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~ 79 (480)
..|-++..+.|..+..........+....+.. +|..
T Consensus 129 ~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 129 VRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777777777766666665 5544
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.48 E-value=2.7e+02 Score=17.70 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 011666 266 ILTILKLALPSAAMVCLE 283 (480)
Q Consensus 266 ~~~~~~~~~p~~~~~~~~ 283 (480)
..|+....+|..+-..+.
T Consensus 61 ~lEi~WtiIP~iil~~ia 78 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLA 78 (91)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 458888889987755544
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.17 E-value=9.7e+02 Score=18.45 Aligned_cols=15 Identities=7% Similarity=0.410 Sum_probs=6.4
Q ss_pred HHHHhhhhhhccccc
Q 011666 364 LALGFGHNIWAGFFS 378 (480)
Q Consensus 364 ~~~~~~~~~i~~l~~ 378 (480)
+.+=.+......-+-
T Consensus 93 ~~lH~~r~~~~gsy~ 107 (261)
T d3cx5c2 93 MFMHMAKGLYYGSYR 107 (261)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhcccc
Confidence 333344444444443
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.87 E-value=4.5e+02 Score=13.94 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=11.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHH
Q 011666 336 LGAGNPDQAKNAMAVTVKLSVLLAL 360 (480)
Q Consensus 336 ~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (480)
+|+-|.+.-.+.+.--+++....++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i 28 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAV 28 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHH
Confidence 3444544444444444444443333
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.85 E-value=9.6e+02 Score=17.78 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHhhccCchh
Q 011666 394 LALSITLDSVQGVLSGVARGCGWQH 418 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~~~l~~~g~~~ 418 (480)
......+..+.....++..--|+..
T Consensus 117 ~Gv~l~~l~m~~aftGY~Lpw~q~s 141 (212)
T d1q90b_ 117 TGVIMAVCTVSFGVTGYSLPWDQVG 141 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBHHH
T ss_pred HhHHHHHHHHHHHHhhhhcchhhHH
Confidence 3333334444444445554444443
Done!