Your job contains 1 sequence.
>011667
MADATENPAAPATLEPLPSTEPKRSWGDVAEEEEEKEKEERKQQQQQQTANTSEDKSTAE
LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK
FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT
RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA
KKLGFSRLKILVYDEADHMLDEVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESV
KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG
ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY
LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGLL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011667
(480 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101993 - symbol:LOS4 "LOW EXPRESSION OF OSMOT... 762 2.8e-150 2
SGD|S000005572 - symbol:DBP5 "Cytoplasmic ATP-dependent R... 763 1.0e-75 1
CGD|CAL0000067 - symbol:DBP5 species:5476 "Candida albica... 749 3.1e-74 1
POMBASE|SPBC12C2.06 - symbol:SPBC12C2.06 "cytoplasmic ATP... 729 4.1e-72 1
MGI|MGI:1353582 - symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) bo... 717 7.7e-71 1
RGD|68381 - symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box heli... 714 1.6e-70 1
UNIPROTKB|F1PIZ6 - symbol:DDX25 "Uncharacterized protein"... 707 8.9e-70 1
UNIPROTKB|Q9UHL0 - symbol:DDX25 "ATP-dependent RNA helica... 707 8.9e-70 1
UNIPROTKB|Q2TBP1 - symbol:DDX25 "ATP-dependent RNA helica... 704 1.8e-69 1
UNIPROTKB|F1RVF0 - symbol:LOC100512980 "Uncharacterized p... 704 1.8e-69 1
DICTYBASE|DDB_G0281553 - symbol:helC "DEAD-box RNA helica... 702 3.0e-69 1
UNIPROTKB|F1MSI6 - symbol:DDX25 "ATP-dependent RNA helica... 702 3.0e-69 1
UNIPROTKB|J3QL17 - symbol:DDX25 "ATP-dependent RNA helica... 695 1.7e-68 1
MGI|MGI:99526 - symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box... 668 1.2e-65 1
UNIPROTKB|Q9NUU7 - symbol:DDX19A "ATP-dependent RNA helic... 665 2.5e-65 1
UNIPROTKB|I3LC00 - symbol:DDX19A "Uncharacterized protein... 665 2.5e-65 1
RGD|1303136 - symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box p... 665 2.5e-65 1
RGD|1593382 - symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box po... 665 2.5e-65 1
UNIPROTKB|Q3ZBV2 - symbol:DDX19A "ATP-dependent RNA helic... 664 3.2e-65 1
UNIPROTKB|Q5ZMC1 - symbol:DDX19B "Uncharacterized protein... 663 4.1e-65 1
UNIPROTKB|E2RR50 - symbol:DDX19A "Uncharacterized protein... 663 4.1e-65 1
UNIPROTKB|F1S758 - symbol:LOC100523329 "Uncharacterized p... 662 5.2e-65 1
UNIPROTKB|E9PTL9 - symbol:Ddx19b "Protein Ddx19b" species... 662 5.2e-65 1
UNIPROTKB|H3BQK0 - symbol:DDX19B "HCG1998531, isoform CRA... 659 1.1e-64 1
UNIPROTKB|Q9UMR2 - symbol:DDX19B "ATP-dependent RNA helic... 659 1.1e-64 1
ZFIN|ZDB-GENE-020419-30 - symbol:ddx19 "DEAD/H (Asp-Glu-A... 659 1.1e-64 1
ZFIN|ZDB-GENE-080721-12 - symbol:zgc:193690 "zgc:193690" ... 657 1.8e-64 1
UNIPROTKB|F1S432 - symbol:DDX19B "Uncharacterized protein... 652 6.0e-64 1
UNIPROTKB|F1MUT6 - symbol:DDX19B "Uncharacterized protein... 651 7.6e-64 1
WB|WBGene00011580 - symbol:ddx-19 species:6239 "Caenorhab... 375 1.4e-63 2
UNIPROTKB|J9NSS1 - symbol:DDX25 "Uncharacterized protein"... 648 1.6e-63 1
UNIPROTKB|Q9DGP9 - symbol:deadsouth "ATP-dependent RNA he... 645 3.3e-63 1
UNIPROTKB|I3L352 - symbol:DDX19A "ATP-dependent RNA helic... 638 1.8e-62 1
UNIPROTKB|B4DRZ7 - symbol:DDX19A "ATP-dependent RNA helic... 634 4.8e-62 1
UNIPROTKB|E9PR46 - symbol:DDX25 "ATP-dependent RNA helica... 628 2.1e-61 1
FB|FBgn0024804 - symbol:Dbp80 "Dead box protein 80" speci... 620 1.5e-60 1
UNIPROTKB|H9KYU4 - symbol:DDX25 "Uncharacterized protein"... 602 1.2e-58 1
FB|FBgn0037573 - symbol:eIF4AIII "eIF4AIII" species:7227 ... 561 2.6e-54 1
CGD|CAL0001638 - symbol:FAL1 species:5476 "Candida albica... 559 4.3e-54 1
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 554 1.5e-53 1
UNIPROTKB|I3L0H8 - symbol:DDX19A "ATP-dependent RNA helic... 554 1.5e-53 1
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 549 4.9e-53 1
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 548 6.3e-53 1
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 547 8.0e-53 1
WB|WBGene00018007 - symbol:F33D11.10 species:6239 "Caenor... 544 1.7e-52 1
WB|WBGene00022029 - symbol:Y65B4A.6 species:6239 "Caenorh... 544 1.7e-52 1
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 543 2.1e-52 1
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 543 2.1e-52 1
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 537 9.2e-52 1
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 537 9.2e-52 1
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 532 3.1e-51 1
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 532 3.1e-51 1
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 532 3.1e-51 1
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 532 3.1e-51 1
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 532 3.1e-51 1
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 532 3.1e-51 1
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 532 3.1e-51 1
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 529 6.5e-51 1
UNIPROTKB|Q2NL22 - symbol:EIF4A3 "Eukaryotic initiation f... 529 6.5e-51 1
UNIPROTKB|E2RDZ4 - symbol:EIF4A3 "Uncharacterized protein... 529 6.5e-51 1
UNIPROTKB|P38919 - symbol:EIF4A3 "Eukaryotic initiation f... 529 6.5e-51 1
UNIPROTKB|A6M931 - symbol:EIF4A3 "Eukaryotic initiation f... 529 6.5e-51 1
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 529 6.5e-51 1
RGD|1591139 - symbol:Eif4a3 "eukaryotic translation initi... 529 6.5e-51 1
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 528 8.3e-51 1
UNIPROTKB|Q5ZM36 - symbol:EIF4A3 "Eukaryotic initiation f... 528 8.3e-51 1
ZFIN|ZDB-GENE-040426-915 - symbol:eif4a3 "eukaryotic tran... 528 8.3e-51 1
ASPGD|ASPL0000014018 - symbol:fal1 species:162425 "Emeric... 527 1.1e-50 1
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 527 1.1e-50 1
GENEDB_PFALCIPARUM|PF14_0655 - symbol:PF14_0655 "RNA heli... 526 1.3e-50 1
UNIPROTKB|Q8IKF0 - symbol:H45 "Helicase 45" species:36329... 526 1.3e-50 1
TAIR|locus:2091191 - symbol:EIF4A-III "eukaryotic initiat... 524 2.2e-50 1
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 522 3.6e-50 1
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 522 3.6e-50 1
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 522 3.6e-50 1
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 522 3.6e-50 1
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 522 3.6e-50 1
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 522 3.6e-50 1
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 522 3.6e-50 1
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 522 3.6e-50 1
POMBASE|SPAC1F5.10 - symbol:SPAC1F5.10 "ATP-dependent RNA... 520 5.8e-50 1
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 518 9.5e-50 1
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 518 9.5e-50 1
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 516 1.5e-49 1
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd... 513 3.2e-49 1
ASPGD|ASPL0000036135 - symbol:AN10417 species:162425 "Eme... 505 2.3e-48 1
TAIR|locus:2030285 - symbol:AT1G72730 species:3702 "Arabi... 497 1.6e-47 1
DICTYBASE|DDB_G0269146 - symbol:ifdA "eukaryotic translat... 494 3.3e-47 1
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 494 3.3e-47 1
UNIPROTKB|F1RZ83 - symbol:EIF4A3 "Eukaryotic initiation f... 491 6.9e-47 1
FB|FBgn0004419 - symbol:me31B "maternal expression at 31B... 487 1.8e-46 1
UNIPROTKB|P54824 - symbol:ddx6 "ATP-dependent RNA helicas... 484 3.8e-46 1
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 484 3.8e-46 1
GENEDB_PFALCIPARUM|PFC0915w - symbol:PFC0915w "ATP-depend... 481 7.9e-46 1
TAIR|locus:2020078 - symbol:EIF4A-2 "eif4a-2" species:370... 481 7.9e-46 1
DICTYBASE|DDB_G0291804 - symbol:ddx6 "DEAD/DEAH box helic... 478 1.6e-45 1
UNIPROTKB|Q5ZKB9 - symbol:DDX6 "Probable ATP-dependent RN... 477 2.1e-45 1
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 476 2.7e-45 1
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 476 2.7e-45 1
UNIPROTKB|J9NU36 - symbol:EIF4A1 "Uncharacterized protein... 476 2.7e-45 1
WARNING: Descriptions of 774 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2101993 [details] [associations]
symbol:LOS4 "LOW EXPRESSION OF OSMOTICALLY RESPONSIVE
GENES 4" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0009408 "response to heat"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0010286 "heat acclimation" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0009737 GO:GO:0005737 GO:GO:0005635 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 GO:GO:0009408 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 EMBL:AL132958 eggNOG:COG0513 HOGENOM:HOG000268797
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GO:GO:0016973 EMBL:AY057548 EMBL:BT002444 EMBL:BT008867
IPI:IPI00533725 PIR:T46157 RefSeq:NP_190879.1 UniGene:At.35224
UniGene:At.675 ProteinModelPortal:Q93ZG7 SMR:Q93ZG7 PaxDb:Q93ZG7
PRIDE:Q93ZG7 EnsemblPlants:AT3G53110.1 GeneID:824477
KEGG:ath:AT3G53110 GeneFarm:1014 TAIR:At3g53110 InParanoid:Q93ZG7
OMA:ESATTFE PhylomeDB:Q93ZG7 ProtClustDB:CLSN2684906
Genevestigator:Q93ZG7 GermOnline:AT3G53110 Uniprot:Q93ZG7
Length = 496
Score = 762 (273.3 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
Identities = 153/249 (61%), Positives = 184/249 (73%)
Query: 13 TLEPLPSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESK 72
T+E +P+ S V +D+ A ++ L+I E +
Sbjct: 4 TVEKVPTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSELNSLSIKEEE 63
Query: 73 KVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISL 132
K + L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISL
Sbjct: 64 KPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISL 123
Query: 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192
PMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+
Sbjct: 124 PMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQ 183
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251
KMGK TGIT+E AVP DST P + R PV+A VVIGTPGT+KKWM+ K+LG + LKIL
Sbjct: 184 KMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKIL 242
Query: 252 VYDEADHML 260
V+DEADHML
Sbjct: 243 VFDEADHML 251
Score = 726 (260.6 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
Identities = 146/222 (65%), Positives = 183/222 (82%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+VLLFSATFNETVK+FV R VKD NQLFVK+E+L+L+SVKQYKV CP E K+ VI+D+I
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQI 334
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
ELG+ +GQTIIFV+TK SA +HKAL + GY+VT++ G + +RDKIVKEFK+ LTQV
Sbjct: 335 MELGD-IGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQV 393
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TDV+ARGFDQQ+VNL+VNY+ P K+ EPD EVYLHR+GRAGRFGRKG VFNLL+
Sbjct: 394 LIATDVIARGFDQQRVNLVVNYNLPTKYETG-EPDYEVYLHRVGRAGRFGRKGAVFNLLL 452
Query: 442 D-GDDMIIMEKIERYFDIKVTEVR--NSDEDFKAALKAAGLL 480
D G D +MEKIE+YF+ V E++ NS+E++K+ALK AGLL
Sbjct: 453 DDGWDKEVMEKIEKYFEANVKEIKSWNSEEEYKSALKEAGLL 494
>SGD|S000005572 [details] [associations]
symbol:DBP5 "Cytoplasmic ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0044614 "nuclear pore cytoplasmic filaments" evidence=IDA]
[GO:0005934 "cellular bud tip" evidence=IDA] [GO:0005643 "nuclear
pore" evidence=IEA;IPI] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=IGI;IMP] [GO:0003724 "RNA helicase
activity" evidence=ISS;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006415 "translational termination" evidence=IGI;IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000822 "inositol hexakisphosphate
binding" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000005572 GO:GO:0005524
GO:GO:0005737 EMBL:BK006948 GO:GO:0005934 GO:GO:0015031
GO:GO:0031965 GO:GO:0003723 GO:GO:0006406 GO:GO:0005844
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
EMBL:U28135 EMBL:Z74954 EMBL:Z74955 PIR:S66920 RefSeq:NP_014689.1
PDB:2KBE PDB:2KBF PDB:3GFP PDB:3PEU PDB:3PEV PDB:3PEW PDB:3PEY
PDB:3RRM PDB:3RRN PDBsum:2KBE PDBsum:2KBF PDBsum:3GFP PDBsum:3PEU
PDBsum:3PEV PDBsum:3PEW PDBsum:3PEY PDBsum:3RRM PDBsum:3RRN
ProteinModelPortal:P20449 SMR:P20449 DIP:DIP-2352N IntAct:P20449
MINT:MINT-488024 STRING:P20449 PaxDb:P20449 PeptideAtlas:P20449
EnsemblFungi:YOR046C GeneID:854211 KEGG:sce:YOR046C CYGD:YOR046c
GeneTree:ENSGT00530000063236 EvolutionaryTrace:P20449
NextBio:976065 Genevestigator:P20449 GermOnline:YOR046C
GO:GO:0044614 GO:GO:0008186 GO:GO:0006415 Uniprot:P20449
Length = 482
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 178/436 (40%), Positives = 270/436 (61%)
Query: 54 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLK 113
E+K T + D ++ + KV K D D + +P SA +F++L L+PELLK
Sbjct: 55 EEKKTKQEDSNLISSEYEVKV-KLADIQADPN--------SPLYSAKSFDELGLAPELLK 105
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQ
Sbjct: 106 GIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ 164
Query: 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGT 233
A+C+ P+RELA Q LEV+++MGK T ITS+ VP DS K + AQV++GTPGT
Sbjct: 165 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVP-DS-----FEKNKQINAQVIVGTPGT 218
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDE-------------------VLLFSATFNETV 274
+ M K + ++KI V DEAD+MLD+ ++LFSATF + V
Sbjct: 219 VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAV 278
Query: 275 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIF 334
+ + +IV + N L ++ E++++++KQ + C +E K V+ + ++ L +G +IIF
Sbjct: 279 RQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE-LYGL-MTIGSSIIF 336
Query: 335 VRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 394
V TK +A+ L+ LK G+EV+ + G +ERD+++ +F++G ++VLI+T+VLARG D
Sbjct: 337 VATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 396
Query: 395 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 454
V+++VNYD P +P Y+HRIGR GRFGRKGV + + D + I+ I++
Sbjct: 397 PTVSMVVNYDLPTLANGQADP--ATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 454
Query: 455 YF-DIKVTEVRNSDED 469
YF DI++T V D D
Sbjct: 455 YFGDIEMTRVPTDDWD 470
>CGD|CAL0000067 [details] [associations]
symbol:DBP5 species:5476 "Candida albicans" [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0000822 "inositol
hexakisphosphate binding" evidence=IEA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0044614 "nuclear
pore cytoplasmic filaments" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000067 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
EMBL:AACQ01000014 EMBL:AACQ01000013 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_721619.1 RefSeq:XP_721738.1 ProteinModelPortal:Q5AJD0
PRIDE:Q5AJD0 GeneID:3636564 GeneID:3636693 KEGG:cal:CaO19.1661
KEGG:cal:CaO19.9230 Uniprot:Q5AJD0
Length = 540
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 170/396 (42%), Positives = 248/396 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L LSPELLKGLY MKF KPSKIQ +LP++L+ P RN+I Q+++G+G
Sbjct: 143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 201
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
KT F L MLSRVDP +K PQ LC+ PTRELA Q LEV+ MGK T IT++ VP N
Sbjct: 202 KTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----N 257
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------- 261
+P + V AQV++GTPG + ++L S++K+ V DEAD+ML+
Sbjct: 258 AIP--RGSSVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRV 315
Query: 262 --------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 313
+++LFSATF V+ + R+V D N L +K+EEL+++ +KQ + C E K
Sbjct: 316 KKALPRGVQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDCRSEQHK 375
Query: 314 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373
V+ + ++ L +G +IIFV K +A L+ +K G+ V+ + G +RD+++ +
Sbjct: 376 FEVLCE-LYGL-LTIGSSIIFVEKKETADVLYGKMKKEGHTVSVLHGGLDNTDRDRLIDD 433
Query: 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-KHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G ++VLI+T+VLARG D V+++VNYD P K+GK PD YLHRIGR GRFGR
Sbjct: 434 FREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYGK---PDPSTYLHRIGRTGRFGR 490
Query: 433 KGVVFNLLMDGDDMIIMEKIERYF-DIKVTEVRNSD 467
GV + + D I+ I+ YF ++++T V D
Sbjct: 491 VGVSISFIHDRRSYDILMAIKAYFGNVEMTRVPTDD 526
>POMBASE|SPBC12C2.06 [details] [associations]
symbol:SPBC12C2.06 "cytoplasmic ATP-dependent RNA
helicase Dbp5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002184 "cytoplasmic translational termination" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IC] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006415 "translational
termination" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC12C2.06 GO:GO:0005829 GO:GO:0005524
GO:GO:0005635 GO:GO:0015031 EMBL:CU329671 GO:GO:0031965
GO:GO:0005643 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006406
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
PIR:T39375 RefSeq:NP_596016.1 PDB:3FHO PDBsum:3FHO
ProteinModelPortal:Q09747 STRING:Q09747 PRIDE:Q09747
EnsemblFungi:SPBC12C2.06.1 GeneID:2539975 KEGG:spo:SPBC12C2.06
EvolutionaryTrace:Q09747 NextBio:20801118 GO:GO:0002184
Uniprot:Q09747
Length = 503
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 172/451 (38%), Positives = 261/451 (57%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLN 106
A + +DK+T + + T + + + +K ++P S +FE+L
Sbjct: 61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELE 120
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L PELLKG+Y MKFQKPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVD
Sbjct: 121 LKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD 179
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
++ PQA+C+ P+RELA Q ++V+ +MGK+T + + + DS VP K + AQ+
Sbjct: 180 ASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIK-DS---VP--KGAKIDAQI 233
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------------------VLLFS 267
VIGTPGT+ M ++L +K+ V DEAD+MLD+ ++LFS
Sbjct: 234 VIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 293
Query: 268 ATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 327
ATF+E V+ + R + N++ +K EELS+E +KQ + C E K V+ + ++ L
Sbjct: 294 ATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE-LYGL-LT 351
Query: 328 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387
+GQ+IIF + K++A + + + G+ V + G +RD I+ F+ G ++VL++T+V
Sbjct: 352 IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 411
Query: 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 447
+ARG D QVNL+VNYD P+ PD + YLHRIGR GRFGR GV N + D
Sbjct: 412 IARGIDVSQVNLVVNYDMPLDQAGR--PDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWE 469
Query: 448 IMEKIERYFDIKVTEVRNSD-EDFKAALKAA 477
M I+ YF +T V D E+ + +K A
Sbjct: 470 EMNAIQEYFQRPITRVPTDDYEELEKVVKNA 500
>MGI|MGI:1353582 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 25"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IDA]
[GO:0051028 "mRNA transport" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1353582 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:29118
OrthoDB:EOG4NS3BD OMA:WHFAERI ChiTaRS:DDX25 EMBL:AF142630
EMBL:AY380091 EMBL:AY380080 EMBL:AY380081 EMBL:AY380082
EMBL:AY380083 EMBL:AY380084 EMBL:AY380085 EMBL:AY380086
EMBL:AY380087 EMBL:AY380088 EMBL:AY380089 EMBL:AY380090
EMBL:AK050693 EMBL:AK078340 EMBL:BC024852 EMBL:BC061130
IPI:IPI00135420 IPI:IPI00759935 RefSeq:NP_038960.2
UniGene:Mm.291723 ProteinModelPortal:Q9QY15 SMR:Q9QY15
STRING:Q9QY15 PhosphoSite:Q9QY15 PaxDb:Q9QY15 PRIDE:Q9QY15
Ensembl:ENSMUST00000034612 GeneID:30959 KEGG:mmu:30959
UCSC:uc012gqi.1 InParanoid:Q9QY15 NextBio:307448 Bgee:Q9QY15
CleanEx:MM_DDX25 Genevestigator:Q9QY15
GermOnline:ENSMUSG00000032101 Uniprot:Q9QY15
Length = 484
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 175/443 (39%), Positives = 261/443 (58%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 48 NT-EDDDDDEDDVVDLAANSL--LNKLIRQSLIESSHRVEVLQKDPSSPLYSVKTFEELR 104
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 105 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 163
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
PQ LC+ PT ELA+Q V+ +MGK + E N +P + VT Q+
Sbjct: 164 ALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRG-NRIP--RGTEVTKQI 219
Query: 227 VIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLF 266
+IGTPGT+ W +KL +++++ V DEAD M+D ++LLF
Sbjct: 220 IIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLF 279
Query: 267 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326
SATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G
Sbjct: 280 SATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKGKYQALCN-IYG-GI 337
Query: 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386
+GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI+T+
Sbjct: 338 TIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 397
Query: 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 446
V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D +
Sbjct: 398 VCARGIDVKQVTIVVNFDLPVNQSE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKL 454
Query: 447 IIMEKIERYFDIKVTEVRNSDED 469
++ KI+ +F+ + ++ D D
Sbjct: 455 PLLMKIQDHFNSNIKQLDPEDMD 477
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 175/443 (39%), Positives = 261/443 (58%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 48 NTEEDDD--EDDVVDLAANSL--LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 103
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL ML+RV+
Sbjct: 104 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVN 162
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
PQ LC+ PT ELA+Q V+ +MGK + E N +P + VT Q+
Sbjct: 163 ALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRG-NRIP--RGTDVTKQI 218
Query: 227 VIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLF 266
VIGTPGT+ W +KL +++++ V DEAD M+D ++LLF
Sbjct: 219 VIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLF 278
Query: 267 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326
SATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G
Sbjct: 279 SATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKDKYQALCN-IYG-GI 336
Query: 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386
+GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI+T+
Sbjct: 337 TIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 396
Query: 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 446
V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D +
Sbjct: 397 VCARGIDVKQVTIVVNFDLPVNQSE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKL 453
Query: 447 IIMEKIERYFDIKVTEVRNSDED 469
++ KI+ +F+ + ++ D D
Sbjct: 454 PLLMKIQDHFNSSIKQLDPEDMD 476
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 167/440 (37%), Positives = 259/440 (58%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPE 110
NT ED +D+ ++ +K + + L E+ +P S TFE+L L E
Sbjct: 28 NTEEDDEDDVVDLAANSL-LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEE 86
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK 170
LLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 87 LLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNTLEL 145
Query: 171 APQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIG 229
PQ LC+ PT ELA+Q V+ +MGK + A+ N++P + VT Q++IG
Sbjct: 146 FPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNHIP--RGTDVTKQIIIG 200
Query: 230 TPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLFSAT 269
TPGT+ W +KL +++++ V DEAD M+D ++LLFSAT
Sbjct: 201 TPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSAT 260
Query: 270 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 329
F ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +G
Sbjct: 261 FEDSVWQFAERIIPDPNVIKLRKEELTLSNIRQYYVLCENRKDKYQALCN-IYG-GITIG 318
Query: 330 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389
Q IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V
Sbjct: 319 QAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVSR 378
Query: 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 449
RG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++
Sbjct: 379 RGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLL 435
Query: 450 EKIERYFDIKVTEVRNSDED 469
KI+ +F+ + ++ D D
Sbjct: 436 MKIQDHFNSSIKQLDPEDMD 455
>UNIPROTKB|Q9UHL0 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0033391 "chromatoid body" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 EMBL:CH471065
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF155140 EMBL:AY735312 EMBL:AY735301 EMBL:AY735302
EMBL:AY735303 EMBL:AY735304 EMBL:AY735305 EMBL:AY735306
EMBL:AY735307 EMBL:AY735308 EMBL:AY735309 EMBL:AY735310
EMBL:AY735311 EMBL:AK312772 EMBL:BC035388 EMBL:BC050360
IPI:IPI00296139 IPI:IPI00759454 RefSeq:NP_037396.3
UniGene:Hs.420263 PDB:2RB4 PDBsum:2RB4 ProteinModelPortal:Q9UHL0
SMR:Q9UHL0 STRING:Q9UHL0 PhosphoSite:Q9UHL0 DMDM:61222937
PaxDb:Q9UHL0 PRIDE:Q9UHL0 Ensembl:ENST00000263576 GeneID:29118
KEGG:hsa:29118 UCSC:uc001qcz.4 GeneCards:GC11P125773
HGNC:HGNC:18698 HPA:HPA020090 HPA:HPA020137 MIM:607663
neXtProt:NX_Q9UHL0 PharmGKB:PA38644 InParanoid:Q9UHL0 OMA:WHFAERI
PhylomeDB:Q9UHL0 ChiTaRS:DDX25 EvolutionaryTrace:Q9UHL0
GenomeRNAi:29118 NextBio:52207 ArrayExpress:Q9UHL0 Bgee:Q9UHL0
CleanEx:HS_DDX25 Genevestigator:Q9UHL0 GermOnline:ENSG00000109832
Uniprot:Q9UHL0
Length = 483
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 172/444 (38%), Positives = 261/444 (58%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
N +ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 49 NINEDD---EEDVVDLAANSL--LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 103
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 104 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 162
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MGK + A+ N +P + +T Q
Sbjct: 163 ALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAI---RGNRIP--RGTDITKQ 217
Query: 226 VVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLD-------------------EVLL 265
++IGTPGT+ W K + +++++ V DEAD M+D ++LL
Sbjct: 218 IIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLL 277
Query: 266 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325
FSATF ++V +F RI+ D N + ++KEEL+L +++QY V C K + + +
Sbjct: 278 FSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSI- 336
Query: 326 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 385
+GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI+T
Sbjct: 337 -TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 395
Query: 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445
+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GRFG+KG+ FN++ + D+
Sbjct: 396 NVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDE 452
Query: 446 MIIMEKIERYFDIKVTEVRNSDED 469
+ + KI+ +F+ + ++ D D
Sbjct: 453 LPSLMKIQDHFNSSIKQLNAEDMD 476
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 171/437 (39%), Positives = 259/437 (59%)
Query: 60 ELDVEGLTID--ESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLK 113
E D E +D + +NK + ++ E S V D +P S TFE+L L ELLK
Sbjct: 51 EEDDEDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLK 110
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ
Sbjct: 111 GIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ 169
Query: 174 ALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 232
LC+ PT ELA+Q V+ +MGK + A+ N +P + VT Q+VIGTPG
Sbjct: 170 CLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNRIP--RGTDVTKQIVIGTPG 224
Query: 233 TIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLFSATFNE 272
T+ W +KL +++++ V DEAD M+D ++LLFSATF +
Sbjct: 225 TVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALPSECQMLLFSATFED 284
Query: 273 TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTI 332
+V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +GQ I
Sbjct: 285 SVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-GITIGQAI 342
Query: 333 IFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 392
IF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V ARG
Sbjct: 343 IFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGI 402
Query: 393 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 452
D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++ KI
Sbjct: 403 DVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKI 459
Query: 453 ERYFDIKVTEVRNSDED 469
+ +F+ + ++ D D
Sbjct: 460 QDHFNSSIKQLDPEDMD 476
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 172/444 (38%), Positives = 262/444 (59%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 28 NTEEDD---EEDVVDLAANSL--LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 82
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 83 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 141
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MG+ + A+ N +P + +T Q
Sbjct: 142 ALELFPQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAI---RGNRIP--RGTDITKQ 196
Query: 226 VVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLL 265
++IGTPGT+ W +KL +++++ V DEAD M+D ++LL
Sbjct: 197 IIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSGCQMLL 256
Query: 266 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325
FSATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G
Sbjct: 257 FSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-G 314
Query: 326 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 385
+GQ IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T
Sbjct: 315 ITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLRGELTVDQRAAIIQRFRDGKEKVLITT 374
Query: 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445
+V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D
Sbjct: 375 NVCARGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDK 431
Query: 446 MIIMEKIERYFDIKVTEVRNSDED 469
+ ++ KI+ +F+ + ++ D D
Sbjct: 432 LPLLMKIQDHFNSNIKQLDPEDMD 455
>DICTYBASE|DDB_G0281553 [details] [associations]
symbol:helC "DEAD-box RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281553 GO:GO:0007275
GO:GO:0005524 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
OMA:PQAICLA HSSP:Q9UHL0 EMBL:AF002677 RefSeq:XP_640633.1
ProteinModelPortal:Q54TF8 EnsemblProtists:DDB0215338 GeneID:8623244
KEGG:ddi:DDB_G0281553 Uniprot:Q54TF8
Length = 465
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 168/406 (41%), Positives = 250/406 (61%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE+L L PELLKG+Y M + KPSKIQ +LP+I+ P NLIAQ+++G+G
Sbjct: 63 NSPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTG 120
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
KT F LGML+ VDP++ APQA+CI PT+ELA+Q EV+ K+G+ + I P +
Sbjct: 121 KTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIK-----PLLYIS 175
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH------------ML 260
+ + K VT QV+IGTPG I + + K+L LK++V DEAD M+
Sbjct: 176 EIEVPKN--VTNQVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIVKMKNVPNQIAMI 233
Query: 261 DEVL-------LFSATFNETVKNFVTRIVKD-YNQLFVKKEELSLESVKQYKVYCPDELA 312
+ +L LFSATF+ V+ + +IV+D Y + +K++ELS+E + QY + C E
Sbjct: 234 NRLLPSNVKVCLFSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDN 293
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ-EERDKIV 371
K +++ D I+ +GQ+I+FV T +A ++H+ + D G+ V+ + G + EER K +
Sbjct: 294 KALILSD-IYGF-ISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQI 351
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH-GKHLEPDCEVYLHRIGRAGRF 430
K+FKDG ++VLI+T+VLARG D QV+L++NYD P+ GK PD YLHRIGR GRF
Sbjct: 352 KDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGK---PDPVHYLHRIGRVGRF 408
Query: 431 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD-EDFKAALK 475
GR GV + + D + I + + + E+++S+ E LK
Sbjct: 409 GRSGVALSFVYDQQSTNKLMNISTHLGVPLKELKSSEIESLDGILK 454
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 171/437 (39%), Positives = 258/437 (59%)
Query: 60 ELDVEGLTID--ESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLK 113
E D E +D + +NK + ++ E S V D +P S TFE+L L ELLK
Sbjct: 51 EEDDEDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLK 110
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ
Sbjct: 111 GIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ 169
Query: 174 ALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 232
LC+ PT ELA+Q V+ +MGK + A+ N +P + VT Q+VIGTPG
Sbjct: 170 CLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNRIP--RGTDVTKQIVIGTPG 224
Query: 233 TIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLFSATFNE 272
T+ W +KL +++++ V DEAD M+D ++LLFSATF +
Sbjct: 225 TVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFADQSIRIQRALPSECQMLLFSATFED 284
Query: 273 TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTI 332
+V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +GQ I
Sbjct: 285 SVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-GITIGQAI 342
Query: 333 IFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 392
IF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V ARG
Sbjct: 343 IFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGI 402
Query: 393 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 452
D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++ KI
Sbjct: 403 DVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKI 459
Query: 453 ERYFDIKVTEVRNSDED 469
+ +F + ++ D D
Sbjct: 460 QDHFSENIKQLDPEDMD 476
>UNIPROTKB|J3QL17 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 Ensembl:ENST00000530414 Uniprot:J3QL17
Length = 468
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 170/431 (39%), Positives = 255/431 (59%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
N +ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 52 NINEDD---EEDVVDLAANSL--LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 106
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 107 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 165
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MGK + A+ N +P + +T Q
Sbjct: 166 ALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAI---RGNRIP--RGTDITKQ 220
Query: 226 VVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLD-------------------EVLL 265
++IGTPGT+ W K + +++++ V DEAD M+D ++LL
Sbjct: 221 IIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLL 280
Query: 266 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325
FSATF ++V +F RI+ D N + ++KEEL+L +++QY V C K + + +
Sbjct: 281 FSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSI- 339
Query: 326 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 385
+GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI+T
Sbjct: 340 -TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 398
Query: 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445
+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GRFG+KG+ FN++ + D+
Sbjct: 399 NVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDE 455
Query: 446 MIIMEKIERYF 456
+ + KI+ +F
Sbjct: 456 LPSLMKIQDHF 466
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 153/397 (38%), Positives = 239/397 (60%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE--- 262
+ + V+ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ---LERGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREE 318
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + + + + Q +IF T+ +AS L L G++V + G + E+R +++
Sbjct: 319 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 376
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG+
Sbjct: 377 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGK 434
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 435 RGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|Q9NUU7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:AK001988 EMBL:AK223262
EMBL:AL832970 EMBL:CH471241 EMBL:BC005162 EMBL:BC006544
EMBL:BC137496 EMBL:BC137497 IPI:IPI00019918 RefSeq:NP_060802.1
UniGene:Hs.656037 ProteinModelPortal:Q9NUU7 SMR:Q9NUU7
IntAct:Q9NUU7 MINT:MINT-1450935 STRING:Q9NUU7 PhosphoSite:Q9NUU7
DMDM:73919226 PaxDb:Q9NUU7 PeptideAtlas:Q9NUU7 PRIDE:Q9NUU7
DNASU:55308 Ensembl:ENST00000302243 GeneID:55308 KEGG:hsa:55308
UCSC:uc002eyv.3 GeneCards:GC16P070380 H-InvDB:HIX0038837
HGNC:HGNC:25628 HPA:HPA045252 neXtProt:NX_Q9NUU7
PharmGKB:PA134894996 InParanoid:Q9NUU7 PhylomeDB:Q9NUU7
GenomeRNAi:55308 NextBio:59538 ArrayExpress:Q9NUU7 Bgee:Q9NUU7
CleanEx:HS_DDX19A Genevestigator:Q9NUU7 GermOnline:ENSG00000168872
Uniprot:Q9NUU7
Length = 478
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 151/398 (37%), Positives = 240/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 143 KTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 317
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 318 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 375
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 376 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 433
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 434 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 151/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 258 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRD 317
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 318 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVI 375
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 376 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 433
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 434 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 153/397 (38%), Positives = 238/397 (59%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE--- 262
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREE 318
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + + + + Q +IF T+ +AS L L G++V + G + E+R +++
Sbjct: 319 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 376
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG+
Sbjct: 377 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGK 434
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 435 RGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 153/397 (38%), Positives = 238/397 (59%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE--- 262
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREE 318
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + + + + Q +IF T+ +AS L L G++V + G + E+R +++
Sbjct: 319 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 376
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG+
Sbjct: 377 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGK 434
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 435 RGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 152/398 (38%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRD 317
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 318 EKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVI 375
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 376 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 433
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 434 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|Q5ZMC1 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K01529 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:11269
EMBL:AADN02040672 UniGene:Gga.7753 EMBL:AJ719463 IPI:IPI00571485
RefSeq:NP_001006568.1 SMR:Q5ZMC1 Ensembl:ENSGALT00000039619
GeneID:426504 KEGG:gga:426504 InParanoid:Q5ZMC1 NextBio:20828056
Uniprot:Q5ZMC1
Length = 479
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 151/398 (37%), Positives = 240/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L+L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 85 NSPLYSVKSFEELHLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 143
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 144 KTAAFVLAMLSRVEPGNKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 202
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 203 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 259 RIQRMLPRDCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRD 318
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + I+ + Q ++F T+ +A L L G++V + G + E+R ++
Sbjct: 319 EKFRALCN-IYG-AITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVI 376
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 377 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 434
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F K+ ++ D D
Sbjct: 435 KRGLAINMVDSKHSMNILNRIQEHFSKKINKLDTDDLD 472
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 151/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 258 RIQRMLPKNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRD 317
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 318 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 375
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 376 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 433
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 434 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 151/381 (39%), Positives = 234/381 (61%)
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 3 ELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALE 61
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVI 228
PQ LC+ PT ELA+Q V+ +MG+ + A+ N +P + +T Q++I
Sbjct: 62 LFPQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAI---RGNRIP--RGTDITKQIII 116
Query: 229 GTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLFSA 268
GTPGT+ W +KL +++++ V DEAD M+D ++LLFSA
Sbjct: 117 GTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSGCQMLLFSA 176
Query: 269 TFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 328
TF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +
Sbjct: 177 TFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-GITI 234
Query: 329 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388
GQ IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V
Sbjct: 235 GQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRAAIIQRFRDGKEKVLITTNVC 294
Query: 389 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 448
ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + +
Sbjct: 295 ARGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPL 351
Query: 449 MEKIERYFDIKVTEVRNSDED 469
+ KI+ +F+ + ++ D D
Sbjct: 352 LMKIQDHFNSNIKQLDPEDMD 372
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 152/397 (38%), Positives = 238/397 (59%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+GK
Sbjct: 89 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGK 147
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 148 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 205
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE--- 262
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 206 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 262
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 263 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREE 322
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + + + + Q +IF T+ +AS L L G++V + G + E+R +++
Sbjct: 323 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 380
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG+
Sbjct: 381 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGK 438
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 439 RGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 475
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 150/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 90 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 148
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 149 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 207
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 208 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 263
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 264 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 323
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 324 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 381
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 382 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 439
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 440 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 477
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 150/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 143
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 144 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 202
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 203 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 318
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 319 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 377 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 434
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 435 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472
>ZFIN|ZDB-GENE-020419-30 [details] [associations]
symbol:ddx19 "DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide 19 (DBP5 homolog, yeast)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-020419-30 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
HSSP:P10081 EMBL:AY099536 IPI:IPI00481107 RefSeq:NP_775365.1
UniGene:Dr.116877 ProteinModelPortal:Q8JGR1 SMR:Q8JGR1
STRING:Q8JGR1 GeneID:192339 KEGG:dre:192339 CTD:192339
InParanoid:Q8JGR1 NextBio:20797174 ArrayExpress:Q8JGR1
Uniprot:Q8JGR1
Length = 487
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 156/399 (39%), Positives = 236/399 (59%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++ +GK
Sbjct: 94 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQETALPMMLAEPPQNLIAQSQSRTGK 152
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTN 212
T FVL MLS VD K P+ LC+CPT ELA+Q +V+ +MGKH + A+ +
Sbjct: 153 TAAFVLAMLSHVDTENKWPECLCVCPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNK-- 210
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF---SRLKILVYDEADHML------DE- 262
+ + + Q+VIGTPGT+ W +KL F ++K+ V DEAD M+ D+
Sbjct: 211 ---LERGAKLQEQIVIGTPGTVLDW--CQKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 265
Query: 263 ------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310
+LLFSATF ETV NF RIV D N + +K+EE +L+++KQY V C +
Sbjct: 266 VRIQRMLPKTCQMLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVICNSK 325
Query: 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 370
K + + I+ + Q +IF T+ +A L L G++V + G E+R +
Sbjct: 326 EEKFQALCN-IYG-AITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAV 383
Query: 371 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 430
++ F+DG +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRF
Sbjct: 384 IERFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRF 441
Query: 431 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
G++G+ N+ M + +I+ +F+ K+ ++ D D
Sbjct: 442 GKRGLAINMADSKFSMNTLNRIQDHFNKKIEKLDTDDLD 480
>ZFIN|ZDB-GENE-080721-12 [details] [associations]
symbol:zgc:193690 "zgc:193690" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-080721-12 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
EMBL:CR846089 IPI:IPI00928637 ProteinModelPortal:F1Q5T4
Ensembl:ENSDART00000134461 ArrayExpress:F1Q5T4 Bgee:F1Q5T4
Uniprot:F1Q5T4
Length = 492
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 155/389 (39%), Positives = 234/389 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE+L L P+LLKG+Y EM F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 77 NSPLYSVKTFEELRLKPQLLKGVY-EMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 135
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS VDP K Q LCI PT ELA+Q +V+ +MGK + +T AV
Sbjct: 136 KTAAFVLAMLSHVDPACKWSQCLCISPTYELALQTGKVIEQMGKFYPEVTLAYAVRGHR- 194
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHML------DE-- 262
+ + + Q+VIGTPGT+ W + K + ++K+ V DEAD M+ D+
Sbjct: 195 ----MERGVRIKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQSI 250
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F R+V D N + +K+EE +L+++KQY V C +
Sbjct: 251 RIQRMLPKGCQMLLFSATFEDSVWKFAERVVPDPNIIKLKREEETLDTIKQYYVLCNSKE 310
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + I+ + Q +IF T+ A+ L + G++V + G + E+R ++
Sbjct: 311 DKFNALCN-IYG-AITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAAVI 368
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F+DG +VLI+T+V ARG D +QV++++N+D P+ K PD E YLHRIGR GRFG
Sbjct: 369 ERFRDGKEKVLITTNVCARGIDVEQVSVVINFDLPLD--KDSNPDNETYLHRIGRTGRFG 426
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKV 460
++G+ N++ M I++ ER+F K+
Sbjct: 427 KRGLAINMVDSQRSMEILKTYERHFGKKL 455
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 148/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 87 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 145
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 146 KTAAFVLAMLSQVEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 204
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 205 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 260
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 261 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRD 320
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + + + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 321 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVI 378
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 379 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 436
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 437 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 474
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 149/398 (37%), Positives = 239/398 (60%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 90 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 148
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 149 KTAAFVLAMLSQVEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 207
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 208 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 263
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 264 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRD 323
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R ++
Sbjct: 324 EKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVI 381
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG
Sbjct: 382 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFG 439
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 440 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 477
>WB|WBGene00011580 [details] [associations]
symbol:ddx-19 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007281
"germ cell development" evidence=IGI] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0007281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00530000063236 HSSP:P10081 EMBL:Z50071
InterPro:IPR025574 Pfam:PF13634 UniGene:Cel.7700 GeneID:174418
KEGG:cel:CELE_T07D4.4 CTD:174418 UCSC:T07D4.4b.1 NextBio:883942
PIR:T24663 RefSeq:NP_495891.1 ProteinModelPortal:Q22308 SMR:Q22308
STRING:Q22308 PRIDE:Q22308 EnsemblMetazoa:T07D4.4a
WormBase:T07D4.4a HOGENOM:HOG000016712 InParanoid:Q22308
OMA:HEGGRFG ArrayExpress:Q22308 Uniprot:Q22308
Length = 1022
Score = 375 (137.1 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 85/236 (36%), Positives = 141/236 (59%)
Query: 244 GFSRLKILVYDEADHMLDEV--LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVK 301
GF+ + +Y+ + D V +LFSAT++E V NF T+I+K+ + +K+EE +L ++K
Sbjct: 780 GFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIK 839
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG- 360
Q+ V C +K I + ++ G + ++IF TK S L++ ++ G++V + G
Sbjct: 840 QFYVQCACRDSKYAAIVN-LYS-GLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGD 897
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH---GKHL---- 413
T+ E D I+ FK G +VLI+T+V ARG D QV++++NYD P+K+ G +
Sbjct: 898 MTVVERADTII-HFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDG 956
Query: 414 --EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467
+PDCE YLHRIGR GRFG+ G+ NL+ D M ++ +E +F +K+ + S+
Sbjct: 957 FTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSN 1012
Score = 314 (115.6 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 81/195 (41%), Positives = 115/195 (58%)
Query: 74 VNKFLDEAEDSSIKTVTTG----D--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKI 127
+NKF+ + E +K V D +P S ++F +L L PE+LK L M FQ P++I
Sbjct: 587 LNKFIQK-EVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDT-MNFQFPTRI 644
Query: 128 QAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187
Q +LP++L P NLIAQA++G+GKT FVL ML R+D NL PQ +C+ PT ELA Q
Sbjct: 645 QETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQI 704
Query: 188 LEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGF 245
EV+ KMGK + A+ N + R +T Q+VIGTPG + ++ K +
Sbjct: 705 GEVVEKMGKFIDNLKIHYAIK--GGNMAAMRGRK-LTEQIVIGTPGITRDYLQKYKCIDP 761
Query: 246 SRLKILVYDEADHML 260
S+++ LV DEAD M+
Sbjct: 762 SKIRCLVLDEADVMI 776
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 147/372 (39%), Positives = 228/372 (61%)
Query: 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178
M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ LC+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQCLCLA 60
Query: 179 PTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 237
PT ELA+Q V+ +MGK + A+ N++P + VT Q++IGTPGT+ W
Sbjct: 61 PTYELALQTGRVVERMGKFCVDVQVMYAI---RGNHIP--RGTDVTKQIIIGTPGTVLDW 115
Query: 238 MSAKKL-GFSRLKILVYDEADHMLD-------------------EVLLFSATFNETVKNF 277
+KL +++++ V DEAD M+D ++LLFSATF ++V F
Sbjct: 116 CFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQF 175
Query: 278 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRT 337
RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +GQ IIF +T
Sbjct: 176 AERIIPDPNVIKLRKEELTLSNIRQYYVLCENRKDKYQALCN-IYG-GITIGQAIIFCQT 233
Query: 338 KNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397
+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V ARG D +QV
Sbjct: 234 RRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQV 293
Query: 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 457
++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++ KI+ +F+
Sbjct: 294 TIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFN 350
Query: 458 IKVTEVRNSDED 469
+ ++ D D
Sbjct: 351 SSIKQLDPEDMD 362
>UNIPROTKB|Q9DGP9 [details] [associations]
symbol:deadsouth "ATP-dependent RNA helicase DDX25"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=IDA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0045495 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032019 HSSP:Q9UHL0 HOVERGEN:HBG107989 CTD:29118
EMBL:AF190623 RefSeq:NP_001082017.1 UniGene:Xl.670
ProteinModelPortal:Q9DGP9 SMR:Q9DGP9 PRIDE:Q9DGP9 GeneID:398180
KEGG:xla:398180 Xenbase:XB-GENE-958142 Uniprot:Q9DGP9
Length = 483
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 153/397 (38%), Positives = 241/397 (60%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L+L ELL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 91 SPLFSVKSFEELHLKNELLRGIYA-MGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGK 149
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTN 212
T FVL MLSRVD N K PQ +C+ PT ELA+Q +V+ +MGK GI A+ +
Sbjct: 150 TAAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNR-- 207
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLD---------- 261
P K + AQ+VIGTPGT+ W + + + + V DEAD M++
Sbjct: 208 --P-GKGSRLEAQIVIGTPGTVLDWCFKLRLITVENISVFVLDEADVMINVQGHSDHSVR 264
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
++LLFSATF ++V F RIV D N + +KKEEL+L++++Q+ C ++
Sbjct: 265 VKRSMPKSCQMLLFSATFEDSVWAFAERIVPDPNIIKLKKEELTLKNIQQFYDQCENKEQ 324
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + + + + Q I+F +T+ AS L + L D G++V + G +R +++
Sbjct: 325 KYSALCNLYGVI--TIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQ 382
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G +VL++T+V ARG D +QV+++VN+D PV + D E YLHRIGR GRFG+
Sbjct: 383 RFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSV--DFETYLHRIGRTGRFGK 440
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
KG+ +L+ + + ++++IE +F+ K+T++ + D D
Sbjct: 441 KGIAVSLI-ENFFVYMLKEIEDHFNTKITKLNSMDMD 476
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 151/400 (37%), Positives = 238/400 (59%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
TGD + + TF L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G
Sbjct: 4 TGD--FWMSGTF--LIRKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSG 58
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTD 209
+GKT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 59 TGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 118
Query: 210 STNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE 262
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 119 K-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 173
Query: 263 -------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 309
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 174 SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 233
Query: 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 369
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 234 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 291
Query: 370 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 429
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GR
Sbjct: 292 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGR 349
Query: 430 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
FG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 350 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 389
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 145/382 (37%), Positives = 230/382 (60%)
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168
P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GKT FVL MLSRV+P+
Sbjct: 10 PQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPS 68
Query: 169 LKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVV 227
+ PQ LC+ PT ELA+Q +V+ +MGK + + AV + + + ++ Q+V
Sbjct: 69 DRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIV 123
Query: 228 IGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-------------VLLFS 267
IGTPGT+ W S K + ++K+ V DEAD M+ D+ +LLFS
Sbjct: 124 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 183
Query: 268 ATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 327
ATF ++V F ++V D N + +K+EE +L+++KQY V C K + + +
Sbjct: 184 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI--T 241
Query: 328 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387
+ Q +IF T+ +AS L L G++V + G + E+R +++ F++G +VL++T+V
Sbjct: 242 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 301
Query: 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 447
ARG D +QV++++N+D PV K PD E YLHRIGR GRFG++G+ N++ M
Sbjct: 302 CARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 359
Query: 448 IMEKIERYFDIKVTEVRNSDED 469
I+ +I+ +F+ K+ + D D
Sbjct: 360 ILNRIQEHFNKKIERLDTDDLD 381
>UNIPROTKB|E9PR46 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 IPI:IPI00984425 Ensembl:ENST00000526875
ArrayExpress:E9PR46 Bgee:E9PR46 Uniprot:E9PR46
Length = 407
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 153/400 (38%), Positives = 234/400 (58%)
Query: 74 VNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQA 129
+NK + ++ E S V D +P S TFE+L L ELLKG+Y M F +PSKIQ
Sbjct: 11 LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQE 69
Query: 130 ISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189
++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ LC+ PT ELA+Q
Sbjct: 70 MALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGR 129
Query: 190 VLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK 249
V+ +MGK + N+ K +T ++ + + + GFS
Sbjct: 130 VVEQMGKFCVDVQVMYAIRGNRNWCFKLKLIDLT-KIRVFVLDEADVMIDTQ--GFSDHS 186
Query: 250 ILVYDEADHMLDEVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 309
I + A ++LLFSATF ++V +F RI+ D N + ++KEEL+L +++QY V C
Sbjct: 187 IRI-QRALPSECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEH 245
Query: 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 369
K + + + +GQ IIF +T+ +A L + G++V+ + G E+R
Sbjct: 246 RKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 303
Query: 370 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 429
I++ F+DG +VLI+T+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GR
Sbjct: 304 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGR 361
Query: 430 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
FG+KG+ FN++ + D++ + KI+ +F+ + ++ D D
Sbjct: 362 FGKKGLAFNMI-EVDELPSLMKIQDHFNSSIKQLNAEDMD 400
>FB|FBgn0024804 [details] [associations]
symbol:Dbp80 "Dead box protein 80" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0044614 "nuclear pore
cytoplasmic filaments" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AF005239 ProteinModelPortal:O61305 SMR:O61305 PaxDb:O61305
PRIDE:O61305 FlyBase:FBgn0024804 InParanoid:O61305
OrthoDB:EOG4BCC38 Bgee:O61305 GermOnline:CG17023 Uniprot:O61305
Length = 460
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 157/397 (39%), Positives = 228/397 (57%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE L+L LLKG+Y M F PSKIQ +LP +L P +N+IAQ+++G+G
Sbjct: 66 NSPLHSVKTFEALHLKASLLKGIYA-MGFNTPSKIQETALPTLLADPPQNMIAQSQSGTG 124
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG-ITSECAVPTDST 211
KT FVL MLSRV+ L PQ LC+ PT ELAIQ EV +MG+ I AV +
Sbjct: 125 KTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEE- 183
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEAD--------H---- 258
V SK+ + ++IGTPG + W + + ++ + V DEAD H
Sbjct: 184 --VDRSKK--IEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCI 239
Query: 259 ----MLD---EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
ML+ ++L FSAT+ + V +F IV D + + +EE SLE++KQY V C +E
Sbjct: 240 RIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEE 299
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K I++ I+ +GQ IIF TK +A+ L + G+ V + G +R ++
Sbjct: 300 GKYNAIQN-IYGC-ISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVL 357
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK-HGKHLEPDCEVYLHRIGRAGRF 430
F+ GL +VLI+T++L+RG D +Q+ ++VN+D PV G DCE YLHRIGR GRF
Sbjct: 358 DRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGM---ADCETYLHRIGRTGRF 414
Query: 431 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467
G+ G+ NL+ D M + IE++F+ K+ EV N+D
Sbjct: 415 GKSGIAINLITDEKTMKVCSDIEKHFNKKI-EVLNTD 450
>UNIPROTKB|H9KYU4 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 OMA:WHFAERI EMBL:AADN02053079
Ensembl:ENSGALT00000000632 Uniprot:H9KYU4
Length = 416
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 155/411 (37%), Positives = 235/411 (57%)
Query: 75 NKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAI 130
NK L + E+S V D +P S TFE+L+L ELL+G+Y M F +PSKIQA
Sbjct: 1 NKLLHTSLVENSHHVEVLQQDPSSPLFSIRTFEELHLKKELLQGVYT-MGFNRPSKIQAN 59
Query: 131 SLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190
+LP+++ P +NLIAQ+++G+GKT FVL MLSRV + PQ LC+ PT ELA+Q V
Sbjct: 60 ALPILMAHPPQNLIAQSQSGTGKTAAFVLAMLSRVKGAERYPQCLCLAPTYELALQIGHV 119
Query: 191 LRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLK 249
KMG+ ++ V T + +S + Q+VIGTPGT+ W ++L R+
Sbjct: 120 AEKMGR---FCNDIRV-TYAVQGNRVSPGTVLEEQIVIGTPGTMLDWCFKRRLLNMRRIC 175
Query: 250 ILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFV 290
+ V DEAD M+D ++LLFSATF ET+ F +IV + +
Sbjct: 176 MFVLDEADVMIDTQGFSSQSIRIQRALPKDCQMLLFSATFKETLWKFALQIVSRPIIIKL 235
Query: 291 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH-KALK 349
++EEL+L +++QY C + K + + + +GQ +IF +T+ SA L K ++
Sbjct: 236 RQEELTLTNIRQYYFVCRNWEQKYEALCNLYGSI--TIGQAMIFCQTRRSADWLSVKMIQ 293
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
D G++V + +R +++ F+DG +VLI+T+V ARG D QV ++VN+ P+
Sbjct: 294 D-GHQVAMLTAELSIVQRADVIQRFRDGKEKVLITTNVCARGIDVAQVTIVVNFGLPINR 352
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 460
K +PD E YLHRIGR GRFG++G+ FN++ D ++ IE +F K+
Sbjct: 353 QK--QPDFETYLHRIGRTGRFGKRGIAFNMV-DSHSAHLVRCIEEHFQTKI 400
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 144/403 (35%), Positives = 225/403 (55%)
Query: 80 EAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
+AED S+++ T+ D TF +NL ELL+G+Y F+KPS IQ S+ I+
Sbjct: 7 QAEDLSNVEFETSEDVEVIP--TFNAMNLKEELLRGIYA-YGFEKPSAIQQRSITPIVKG 63
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F + +L +D L+ Q LC+ PTRELA+Q +V+ +G
Sbjct: 64 --RDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMM 121
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C V TN ++ +V GTPG + + + L +K+LV DEAD
Sbjct: 122 NV--QCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADE 179
Query: 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESV 300
ML+ +V+L SAT + ++ + D ++ VK++EL+LE +
Sbjct: 180 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGI 239
Query: 301 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360
KQ+ V E K + D L + Q +IF TK L + +++ + V+++ G
Sbjct: 240 KQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG 297
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 420
Q+ERD+I+KEF+ G ++VLI+TDV ARG D QQV+L++NYD P E+Y
Sbjct: 298 DMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNR--------ELY 349
Query: 421 LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 350 IHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYSTQIDEM 391
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 139/381 (36%), Positives = 209/381 (54%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TFE +NL P+LLKG+Y F+ PS IQ+ ++ I++ R+ IAQA++G+GKT F +G
Sbjct: 27 TFESMNLKPDLLKGIYA-YGFETPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIG 83
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
ML +D K QAL + PTRELAIQ V++ +G + I + + N K+
Sbjct: 84 MLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACI--GGKNVGEDVKKL 141
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
Q+V GTPG + + + L +K+L+ DEAD + +
Sbjct: 142 QQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQ 201
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
V++ SAT V ++ D ++ VK++E+SL +KQY V C E K + D
Sbjct: 202 VVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYD 261
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
L + Q +IF TK + L +K + V + G Q+ERD I+ +F+ G ++VL
Sbjct: 262 NL--TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVL 319
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
ISTDV ARG D QQV+L++NYD P D E Y+HRIGR+GRFGRKG NL+
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPT--------DKENYIHRIGRSGRFGRKGTAINLITK 371
Query: 443 GDDMIIMEKIERYFDIKVTEV 463
DD++ +++ E+Y+ K+ E+
Sbjct: 372 -DDVVTLKEFEKYYSTKIKEM 391
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 146/410 (35%), Positives = 228/410 (55%)
Query: 75 NKFLDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-L 132
+K L+E DS I ++ Y T +F+ + L PELL+G+Y F++PS IQ + L
Sbjct: 5 DKGLEEIPDSQI------ESNYDEITDSFDSMELKPELLRGVYA-YGFERPSAIQQRAIL 57
Query: 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192
P++ ++IAQA++G+GKT F + L ++DPN+KA QAL + PTRELA Q +V+
Sbjct: 58 PIVKG---NDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVI 114
Query: 193 KMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251
+G I C T + + + P Q+V+GTPG I + + L ++K+
Sbjct: 115 AIGDFMNIQCHACIGGTAVRDDMNALREGP---QIVVGTPGRIHDMIQRRVLKTDQMKMF 171
Query: 252 VYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293
+ DEAD ML +V+L SAT + V T+ ++D ++ VKK+
Sbjct: 172 ILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQ 231
Query: 294 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353
EL+LE +KQ+ + E K+ + D ++E + Q +IF T+ L L +
Sbjct: 232 ELTLEGIKQFYIAVEKEEWKLDTLSD-LYET-VTITQAVIFCNTRRKVDWLTDKLTARDF 289
Query: 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL 413
V+ + G Q +RD I+KEF+ G ++VLI+TD+LARG D QQV+L++NYD P
Sbjct: 290 TVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANR---- 345
Query: 414 EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E Y+HRIGR GRFGRKGV N + DD+ +M +IE+++ ++ E+
Sbjct: 346 ----ENYIHRIGRGGRFGRKGVAINFVT-ADDVRMMREIEQFYSTQIEEM 390
>UNIPROTKB|I3L0H8 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:25628 EMBL:AC012184 ProteinModelPortal:I3L0H8 SMR:I3L0H8
PRIDE:I3L0H8 Ensembl:ENST00000417604 Bgee:I3L0H8 Uniprot:I3L0H8
Length = 447
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 128/350 (36%), Positives = 207/350 (59%)
Query: 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTG 199
+NLIAQ+++G+GKT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK +
Sbjct: 100 QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE 159
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADH 258
+ AV + + + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD
Sbjct: 160 LKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 214
Query: 259 ML------DE-------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 299
M+ D+ +LLFSATF ++V F ++V D N + +K+EE +L++
Sbjct: 215 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 274
Query: 300 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIM 359
+KQY V C K + + + + Q +IF T+ +AS L L G++V +
Sbjct: 275 IKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLS 332
Query: 360 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEV 419
G + E+R +++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E
Sbjct: 333 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNET 390
Query: 420 YLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
YLHRIGR GRFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 391 YLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 440
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 139/383 (36%), Positives = 216/383 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NL LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLREALLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISK 218
+L ++D LKA QA+ + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 89 SILQQIDVELKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRN--DVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+V+GTPG + ++ + L +K+ DEAD ML
Sbjct: 147 LQADVPHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQKLATD 206
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+V+L SAT + V T+ ++D ++ VKKEEL+LE ++Q+ + E K+ + D
Sbjct: 207 TQVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGIRQFYINVEKEEWKLDTLCD- 265
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
++E + Q +IF+ T+ L + + + V+ + G Q+ERD I+KEF+ G ++
Sbjct: 266 LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSR 324
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 325 VLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMI 376
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
+ DD + IE +++ V E+
Sbjct: 377 TE-DDKRTLRDIETFYNTTVEEM 398
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 140/391 (35%), Positives = 208/391 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T TFED L ELL G++ E F+KPS IQ ++P+ +T R+++A+A+NG
Sbjct: 37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNG 93
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L +V P L QAL + PTRELA+Q +V+R +GKH GI+ C V T
Sbjct: 94 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGG 151
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
TN R T +++GTPG + S K S + + DEAD ML
Sbjct: 152 TNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQ 211
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+ LLFSATF TVK F+ + + ++ + EEL+L+ + QY + +E
Sbjct: 212 ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFV-EERQ 269
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K+ + +L ++ Q IIF + N L K + D GY Q+ER+K+
Sbjct: 270 KLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 327
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
EF+ G + L+ +D+L RG D Q VN+++N+D P E YLHRIGR+GRFG
Sbjct: 328 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP--------KTAETYLHRIGRSGRFGH 379
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL+ + +D + KIE+ ++ +
Sbjct: 380 LGLAINLI-NWNDRFNLYKIEQELGTEIAAI 409
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 142/405 (35%), Positives = 225/405 (55%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL 136
+D+ EDS I +T Y TF+D+NL PELL+G+Y F++PS IQ ++ IL
Sbjct: 2 VDQLEDSVI------ETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPIL 54
Query: 137 TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196
R+++AQA++G+GKT F + +L ++D +LK QAL + PTRELA Q +V+ +G
Sbjct: 55 GE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112
Query: 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256
+ EC T VV+GTPG + + + L +++ V DEA
Sbjct: 113 LMNV--ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEA 170
Query: 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE 298
D ML +V+L SAT + V T+ ++D ++ VKK+EL+LE
Sbjct: 171 DEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLE 230
Query: 299 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 358
+KQ+ V E K+ + D ++E + Q +IF T+ L + L + + V+++
Sbjct: 231 GIKQFYVAVEKEEWKLDTLCD-LYET-VTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSM 288
Query: 359 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCE 418
G Q +RD ++ EF+ G +++LI+TD+LARG D QQV+L++NYD P E
Sbjct: 289 HGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANR--------E 340
Query: 419 VYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
Y+HRIGR GRFGRKGV N + + DD+ +M +IE++++ + E+
Sbjct: 341 NYIHRIGRGGRFGRKGVSINFVTN-DDVRMMREIEQFYNTHIEEM 384
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 138/403 (34%), Positives = 221/403 (54%)
Query: 80 EAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
+AE + TV + + TF+ + L +LL+G+Y F+KPS IQ ++P IL
Sbjct: 5 KAEKDDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYA-YGFEKPSAIQQRAVPAILKA 63
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F + +L +D ++ QAL + PTRELA+Q +V+ +G +
Sbjct: 64 --RDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYM 121
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C TN ++ VV GTPG + + + L +K+LV DEAD
Sbjct: 122 NV--QCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADE 179
Query: 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESV 300
ML+ +V+L SAT + ++ + D ++ VK++EL+LE +
Sbjct: 180 MLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGI 239
Query: 301 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360
KQ+ V E K + D L + Q ++F T+ L +K+ + V+++ G
Sbjct: 240 KQFFVAVDREEWKFDTLIDLYDTL--TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHG 297
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 420
Q++RD+++KEF+ G T+VLISTDV ARG D QV+L++NYD P E+Y
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNR--------ELY 349
Query: 421 LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 350 IHRIGRSGRFGRKGVAINFVKQ-DDVRILRDIEQYYSTQIDEM 391
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 142/412 (34%), Positives = 225/412 (54%)
Query: 70 ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQA 129
E+KK N + E S + V+ P TF+ + L +LL+G+Y F+KPS IQ
Sbjct: 3 ENKKKNDDMATVEFESSEEVSI--IP-----TFDKMGLREDLLRGIYA-YGFEKPSAIQQ 54
Query: 130 ISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189
++P IL R++IAQA++G+GKT F + +L +D ++ QAL + PTRELA+Q +
Sbjct: 55 RAIPAILKA--RDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQK 112
Query: 190 VLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK 249
V+ +G + + +C TN ++ VV GTPG + + + L +K
Sbjct: 113 VVLALGDYMNV--QCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIK 170
Query: 250 ILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVK 291
+LV DEAD ML+ +V+L SAT + ++ + D ++ VK
Sbjct: 171 LLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVK 230
Query: 292 KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF 351
++EL+LE +KQ+ V E K + D L + Q ++F T+ L +K+
Sbjct: 231 RDELTLEGIKQFFVAVDREEWKFDTLIDLYDTL--TITQAVLFCNTRRKVDWLTDKMKEA 288
Query: 352 GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK 411
+ V+++ G Q++RD+++KEF+ G T+VLISTDV ARG D QV+L++NYD P
Sbjct: 289 NFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNR-- 346
Query: 412 HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 347 ------ELYIHRIGRSGRFGRKGVAINFVKQ-DDVRILRDIEQYYSTQIDEM 391
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 140/402 (34%), Positives = 221/402 (54%)
Query: 83 DSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP 139
D ++ V G ++ Y +F+++NL ELL+G+Y F++PS IQ ++ ++
Sbjct: 3 DKGLEDVPEGQIESNYDETVDSFDEMNLKSELLRGIYA-YGFERPSAIQQRAIMPVIKG- 60
Query: 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199
++IAQA++G+GKT F + +L ++D N+K QAL + PTRELA Q +V+ +G
Sbjct: 61 -HDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMN 119
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
I EC T+ K QVV+GTPG + + + L +K+ V DEAD M
Sbjct: 120 I--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEM 177
Query: 260 LD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVK 301
L +V+L SAT + V T+ ++D ++ VKK+EL+LE +K
Sbjct: 178 LSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIK 237
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361
Q+ + E K+ + D ++E + Q +IF T+ L L + V+ + G
Sbjct: 238 QFYIAVEKEEWKLDTLSD-LYET-VTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGD 295
Query: 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421
Q +RD I+KEF+ G ++VLI+TD+LARG D QQV+L++NYD P E Y+
Sbjct: 296 MDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANR--------ENYI 347
Query: 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
HRIGR GRFGRKGV N + DD+ +M +IE+++ ++ E+
Sbjct: 348 HRIGRGGRFGRKGVAINFVT-ADDVRMMREIEQFYSTQIEEM 388
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 139/383 (36%), Positives = 216/383 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NL LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 56 SFDDMNLRETLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 111
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISK 218
+L ++D LK QAL + PTRELA Q +V+ +G + G T C T+ N V K
Sbjct: 112 SILQQIDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEV--QK 169
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+V+GTPG + ++ K L +K+ V DEAD ML
Sbjct: 170 LQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQKLSTS 229
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+V+L SAT V + T+ +++ ++ VKKEEL+LE ++Q+ + E K+ + D
Sbjct: 230 IQVVLLSATMPAEVLDVTTKFMREPVRILVKKEELTLEGIRQFYINVEKEEWKLDTLCD- 288
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
++E + Q +IF+ T+ L + + + V+ + G Q++RD I++EF+ G ++
Sbjct: 289 LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSR 347
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 348 VLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMV 399
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
+ DD + IE +++ V E+
Sbjct: 400 TE-DDKRTLRDIETFYNTTVEEM 421
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 130/380 (34%), Positives = 217/380 (57%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D+ L LL+G++ F++PS IQ ++ I+ +++AQA++G+GKT F +
Sbjct: 24 FDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAA 80
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+D ++KAPQAL + PTRELA+Q +V+ + H I + T++V ++
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI--GGTSFVEDAEGLR 138
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EV 263
AQ+V+GTPG + + ++ ++K+ + DEAD ML +V
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 197
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
+L SAT V T+ +++ ++ VKK+EL+LE +KQ+ V +E K + D +++
Sbjct: 198 VLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD-LYD 256
Query: 324 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383
+ Q +IF T+ L L++ + V+ I Q+ERD I+KEF+ G +++LI
Sbjct: 257 -SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 315
Query: 384 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443
STD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N + +
Sbjct: 316 STDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRKGVAINFVTN- 366
Query: 444 DDMIIMEKIERYFDIKVTEV 463
+D+ M ++E+++ ++ E+
Sbjct: 367 EDVGAMRELEKFYSTQIEEL 386
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 130/380 (34%), Positives = 217/380 (57%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D+ L LL+G++ F++PS IQ ++ I+ +++AQA++G+GKT F +
Sbjct: 24 FDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAA 80
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+D ++KAPQAL + PTRELA+Q +V+ + H I + T++V ++
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI--GGTSFVEDAEGLR 138
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EV 263
AQ+V+GTPG + + ++ ++K+ + DEAD ML +V
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 197
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
+L SAT V T+ +++ ++ VKK+EL+LE +KQ+ V +E K + D +++
Sbjct: 198 VLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD-LYD 256
Query: 324 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383
+ Q +IF T+ L L++ + V+ I Q+ERD I+KEF+ G +++LI
Sbjct: 257 -SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 315
Query: 384 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443
STD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N + +
Sbjct: 316 STDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRKGVAINFVTN- 366
Query: 444 DDMIIMEKIERYFDIKVTEV 463
+D+ M ++E+++ ++ E+
Sbjct: 367 EDVGAMRELEKFYSTQIEEL 386
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + + + + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKL 147
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 148 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+ + D +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-L 266
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 267 YET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 325
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVT 377
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 378 EEDKRTLRD-IETFYNTSIEEM 398
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/390 (33%), Positives = 220/390 (56%)
Query: 93 DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGS 151
+T Y + F+DLNL P +++G++ ++ PS IQ ++ + +T R+++AQA++G+
Sbjct: 15 ETNYDNVVYKFDDLNLKPNIVRGIF-GYGYETPSAIQQRAI-LPITEG-RDVLAQAQSGT 71
Query: 152 GKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211
GKT F + L R++ N KA QAL + PTRELA+Q V+ +G + +T ++ S
Sbjct: 72 GKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSM 131
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------- 261
+ + R V Q+V+GTPG + + + ++K+ + DEAD ML
Sbjct: 132 SDDIEAFRSGV--QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNI 189
Query: 262 --------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 313
+++L SAT + V T+ + + ++ VKK+EL+LE +KQ+ + E K
Sbjct: 190 FRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYK 249
Query: 314 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373
+ D +++ + Q +IF T++ L L++ + V+ I Q ERD I+KE
Sbjct: 250 FDCLCD-LYD-SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKE 307
Query: 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 433
F+ G +++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRK
Sbjct: 308 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRK 359
Query: 434 GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
GV N + D D + +M +IE+++ ++ E+
Sbjct: 360 GVAINFVTDRD-VGMMREIEKFYSTQIEEM 388
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 140/416 (33%), Positives = 226/416 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 140/416 (33%), Positives = 226/416 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 140/416 (33%), Positives = 226/416 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 140/416 (33%), Positives = 226/416 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/390 (33%), Positives = 220/390 (56%)
Query: 93 DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGS 151
+T Y + F+DLNL P +++G++ ++ PS IQ ++ + +T R+++AQA++G+
Sbjct: 15 ETNYDNVVYKFDDLNLKPNIVRGIF-GYGYETPSAIQQRAI-LPITEG-RDVLAQAQSGT 71
Query: 152 GKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211
GKT F + L R++ N KA QAL + PTRELA+Q V+ +G + +T ++ S
Sbjct: 72 GKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSM 131
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------- 261
+ + R V Q+V+GTPG + + + ++K+ + DEAD ML
Sbjct: 132 SDDIEAFRSGV--QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNI 189
Query: 262 --------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 313
+++L SAT + V T+ + + ++ VKK+EL+LE +KQ+ + E K
Sbjct: 190 FRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYK 249
Query: 314 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373
+ D +++ + Q +IF T++ L L++ + V+ I Q ERD I+KE
Sbjct: 250 FDCLCD-LYD-SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKE 307
Query: 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 433
F+ G +++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRK
Sbjct: 308 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRK 359
Query: 434 GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
GV N + D D + +M +IE+++ ++ E+
Sbjct: 360 GVAINFVTDRD-VGMMREIEKFYSTQIEEM 388
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 140/416 (33%), Positives = 226/416 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 132/382 (34%), Positives = 213/382 (55%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
TFE + L ELL+G++ F+KPS IQ + LP+I R+ IAQA++G+GKT F +
Sbjct: 33 TFESMGLREELLRGIF-NYGFEKPSAIQQRAILPIIKG---RDTIAQAQSGTGKTATFSI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
G L V+ N+++PQ L + PTRELA Q +V + + I V N K+
Sbjct: 89 GALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACV--GGKNLSDDVKK 146
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V GTPG + ++ K L +K+++ DEAD ML
Sbjct: 147 LETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGT 206
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+++L SAT + V + + + ++ +K++EL+L+ +KQ+ V E K + D I
Sbjct: 207 QIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCD-I 265
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
++ + Q +IF TK L + ++D + V ++ G +Q+ER++I+K F+ G +V
Sbjct: 266 YD-SLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRV 324
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P+ D E Y+HRIGR+GRFGRKGV N +
Sbjct: 325 LITTDILARGIDVQQVSLVINYDLPI--------DRENYIHRIGRSGRFGRKGVAINFVK 376
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE+++ ++ E+
Sbjct: 377 NSDIRILRD-IEQFYSTQIDEM 397
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 138/417 (33%), Positives = 227/417 (54%)
Query: 65 GLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKP 124
G T ++K + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KP
Sbjct: 8 GGTTGSARK--RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKP 62
Query: 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184
S IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA
Sbjct: 63 SAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 120
Query: 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244
+Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 VQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR 178
Query: 245 FSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYN 286
+K+LV DEAD ML+ +V+L SAT + + + D
Sbjct: 179 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 238
Query: 287 QLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346
++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTE 296
Query: 347 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 356
Query: 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 404
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 138/406 (33%), Positives = 221/406 (54%)
Query: 76 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMI 135
+ L E + + I+ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I
Sbjct: 11 RILKEEDMTKIEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQI 67
Query: 136 LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195
+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA Q +VL +G
Sbjct: 68 IKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALG 125
Query: 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255
+ + +C TN ++ VV GTPG + + + L +K+LV DE
Sbjct: 126 DYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 183
Query: 256 ADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL 297
AD ML+ +V L SAT + + + D ++ VK++EL+L
Sbjct: 184 ADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTL 243
Query: 298 ESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 357
E +KQ+ V E K + D L + Q +IF TK L + +++ + V++
Sbjct: 244 EGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSS 301
Query: 358 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 417
+ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 302 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNR-------- 353
Query: 418 EVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 354 ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 398
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 136/404 (33%), Positives = 217/404 (53%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+D D ++ T+ + T A TFED++L LL+G+Y ++ PS +Q+ ++ I
Sbjct: 5 IDRRADDKMEFNTSKEV--TVAPTFEDMHLKESLLRGIYA-YGYESPSAVQSRAIVQICK 61
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197
R+ IAQA++G+GKT F + L +D ++ QAL + PTRELA Q V+ +G +
Sbjct: 62 G--RDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDY 119
Query: 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257
+ +C TN ++ VV GTPG + + + L +K+LV DEAD
Sbjct: 120 MNV--QCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEAD 177
Query: 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 299
+L+ +V++ SAT V + T+ + D ++ VK++EL+LE
Sbjct: 178 ELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEG 237
Query: 300 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIM 359
+KQY + E K + D L + Q +IF T+ L +++ + V+++
Sbjct: 238 IKQYFIAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTRRKVDWLTDKMREANFTVSSMH 295
Query: 360 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEV 419
G Q+ERD I+++F+ G ++VLISTDV ARG D QQV+L++NYD P E
Sbjct: 296 GEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNR--------EN 347
Query: 420 YLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
Y+HRIGR+GRFGRKGV N + DD+ I+ IE Y+ ++ E+
Sbjct: 348 YIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEM 390
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 135/381 (35%), Positives = 210/381 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL ELL+G+Y F+KPS IQ ++ P + R++IAQA++G+GKT F +
Sbjct: 32 FDDMNLREELLRGIY-GYGFEKPSAIQQRAIIPCVRG---RDVIAQAQSGTGKTATFSIA 87
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L ++D +++ QAL + PTRELA Q V+ +G++ + S + TN ++
Sbjct: 88 ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACI--GGTNVREDARIL 145
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
VV+GTPG + ++ K L +K+ V DEAD ML +
Sbjct: 146 ESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQ 205
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
V+L SAT V ++D + VKKEEL+LE +KQ+ V E K+ + D
Sbjct: 206 VILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYD 265
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
L + Q++IF T+ L + + + V+ + G Q +R+ I+K+F+ G ++VL
Sbjct: 266 TLS--ITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVL 323
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
I+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N + D
Sbjct: 324 ITTDLLARGIDVQQVSLVINYDLPSNR--------ENYIHRIGRGGRFGRKGVAINFITD 375
Query: 443 GDDMIIMEKIERYFDIKVTEV 463
DD I++ IE+++ + E+
Sbjct: 376 -DDRRILKDIEQFYHTTIEEM 395
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 135/382 (35%), Positives = 213/382 (55%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ L L+ +LL+G+Y F+KPS IQ + IL Y + I QA++G+GKT FV+
Sbjct: 24 TFDALGLNEKLLRGIY-SYGFEKPSAIQQRGIKPILNG-Y-DTIGQAQSGTGKTATFVIS 80
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L ++ + A QAL + PTRELA Q +V+ +G + + +C T +
Sbjct: 81 SLQLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKV--KCHACVGGTVVREDIDKL 138
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
+V+GTPG + + + LG RLK+ + DEAD ML +
Sbjct: 139 KQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
V LFSAT + + TR ++D + VKK+EL+LE ++Q+ V E K+ + D ++
Sbjct: 199 VALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD-LY 257
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
E + Q+II+ T+ L + + + + V+ + G Q++RD I++EF+ G T+VL
Sbjct: 258 ET-LTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 316
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
++TD+LARG D QQV+L++NYD P PD Y+HRIGR+GRFGRKGV N + +
Sbjct: 317 VTTDLLARGIDVQQVSLVINYDLPAS------PD--TYIHRIGRSGRFGRKGVAINFVTN 368
Query: 443 GD-DMIIMEKIERYFDIKVTEV 463
D + ++KIE Y+ ++ E+
Sbjct: 369 DDKEKDKLKKIESYYSTQIEEM 390
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 135/382 (35%), Positives = 213/382 (55%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ L L+ +LL+G+Y F+KPS IQ + IL Y + I QA++G+GKT FV+
Sbjct: 24 TFDALGLNEKLLRGIY-SYGFEKPSAIQQRGIKPILNG-Y-DTIGQAQSGTGKTATFVIS 80
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L ++ + A QAL + PTRELA Q +V+ +G + + +C T +
Sbjct: 81 SLQLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKV--KCHACVGGTVVREDIDKL 138
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
+V+GTPG + + + LG RLK+ + DEAD ML +
Sbjct: 139 KQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
V LFSAT + + TR ++D + VKK+EL+LE ++Q+ V E K+ + D ++
Sbjct: 199 VALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD-LY 257
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
E + Q+II+ T+ L + + + + V+ + G Q++RD I++EF+ G T+VL
Sbjct: 258 ET-LTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 316
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
++TD+LARG D QQV+L++NYD P PD Y+HRIGR+GRFGRKGV N + +
Sbjct: 317 VTTDLLARGIDVQQVSLVINYDLPAS------PD--TYIHRIGRSGRFGRKGVAINFVTN 368
Query: 443 GD-DMIIMEKIERYFDIKVTEV 463
D + ++KIE Y+ ++ E+
Sbjct: 369 DDKEKDKLKKIESYYSTQIEEM 390
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 137/400 (34%), Positives = 215/400 (53%)
Query: 82 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR 141
+D + T G P TS F D+ + ++L+G+Y E F+KPS IQ ++ IL R
Sbjct: 20 DDKLVFETTDGIEPITS---FNDMGIKEDVLRGVY-EYGFEKPSAIQQRAVMPILQG--R 73
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
++IAQA++G+GKT+ L + VD + + QAL + PTRELA Q + ++ +G H I
Sbjct: 74 DVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQ 133
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + +S I K VV GTPG + + + L +K+L+ DE+D ML
Sbjct: 134 AHACIGGNSVGE-DIRKLEH-GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLS 191
Query: 262 ------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 303
+V L SAT + ++ + + ++ VK++EL+LE +KQ+
Sbjct: 192 RGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQF 251
Query: 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363
V E K + D L + Q +IF TK L + ++ + V+++ G
Sbjct: 252 FVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMP 309
Query: 364 QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHR 423
Q+ERD I+ EF+ G ++VLI+TDV ARG D QQV+L++NYD P E+Y+HR
Sbjct: 310 QKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNR--------ELYIHR 361
Query: 424 IGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
IGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 362 IGRSGRFGRKGVAINFVKS-DDIKILRDIEQYYSTQIDEM 400
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 214/382 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ +LK QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + +++ ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 378
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 379 EEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 136/382 (35%), Positives = 212/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 36 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 91
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 92 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 149
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 150 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 209
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 210 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 268
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 269 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 327
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 328 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 379
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 380 EEDKRILRD-IETFYNTTVEEM 400
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 130/403 (32%), Positives = 223/403 (55%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
DE ++ ++ T+ D + ++FE++NL +LL+G+Y ++ PS +Q+ ++ I
Sbjct: 3 DEIMEN-VELTTSEDV--NAVSSFEEMNLKEDLLRGIYA-YGYETPSAVQSRAIIQICKG 58
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F +G+L +D +++ QAL + PTRELA+Q V+ +G H
Sbjct: 59 --RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C T+ K+ VV GTPG + + + L +K+L+ DEAD
Sbjct: 117 NV--QCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADE 174
Query: 259 MLDE------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESV 300
+L++ V++ SAT + V + + ++ VK++EL+LE +
Sbjct: 175 LLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGL 234
Query: 301 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360
KQY + E K + D L + Q +IF ++ L + +++ + VT++ G
Sbjct: 235 KQYFIAVEKEEWKFDTLCDLYDTL--TITQAVIFCNSRRKVDWLTEKMREANFTVTSMHG 292
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 420
Q+ERD I+++F+ G ++VLI TD+ ARG D QQV+L++NYD P E Y
Sbjct: 293 EMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANR--------ENY 344
Query: 421 LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+HRIGR+GRFGRKGV N + + +D+ I+ IE+Y+ + E+
Sbjct: 345 IHRIGRSGRFGRKGVAINFVTN-EDVRILRDIEQYYSTVIDEM 386
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 134/391 (34%), Positives = 206/391 (52%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T +FED NL ELL G++ E F+KPS IQ S+PM L R+++A+A+NG
Sbjct: 21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNG 77
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L V P L QAL + PTRELA+Q +V+R +GKH G ++C V T
Sbjct: 78 TGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGG 135
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T+ R +++GTPG + + K + S + V DEAD ML
Sbjct: 136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQ 195
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+ LLFSATF VK+F+ + + ++ + +EL+L+ + Q+ + +E
Sbjct: 196 ILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM-DELTLKGISQFYAFV-EEKQ 253
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K+ + +L ++ Q+IIF + N L K + + GY Q+ R+K+
Sbjct: 254 KLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFH 311
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
EF+ G + L+ +D+L RG D Q VN+++N+D P E YLHRIGR+GRFG
Sbjct: 312 EFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFP--------KTAETYLHRIGRSGRFGH 363
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL M +D + KIE+ ++ +
Sbjct: 364 LGLAINL-MSWNDRYSLYKIEQELGTEIKPI 393
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 134/391 (34%), Positives = 206/391 (52%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T +FED NL ELL G++ E F+KPS IQ S+PM L R+++A+A+NG
Sbjct: 21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNG 77
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L V P L QAL + PTRELA+Q +V+R +GKH G ++C V T
Sbjct: 78 TGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGG 135
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T+ R +++GTPG + + K + S + V DEAD ML
Sbjct: 136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQ 195
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+ LLFSATF VK+F+ + + ++ + +EL+L+ + Q+ + +E
Sbjct: 196 ILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM-DELTLKGISQFYAFV-EEKQ 253
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K+ + +L ++ Q+IIF + N L K + + GY Q+ R+K+
Sbjct: 254 KLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFH 311
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
EF+ G + L+ +D+L RG D Q VN+++N+D P E YLHRIGR+GRFG
Sbjct: 312 EFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFP--------KTAETYLHRIGRSGRFGH 363
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL M +D + KIE+ ++ +
Sbjct: 364 LGLAINL-MSWNDRYSLYKIEQELGTEIKPI 393
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 135/382 (35%), Positives = 213/382 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 39 FDDMNLKETLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 94
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G + C T+ N + K
Sbjct: 95 ILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRN--EMQKL 152
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 153 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNI 212
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V T+ +++ ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 213 QVVLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 271
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 272 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRV 330
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N +
Sbjct: 331 LITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVT 382
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
+ D I+ + IE +++ V E+
Sbjct: 383 EEDKRILRD-IETFYNTTVEEM 403
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 131/387 (33%), Positives = 212/387 (54%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+D+ L ELL+G+Y F+KPS IQ ++ T +++IAQA++G+GKT F +
Sbjct: 30 SFDDMELKEELLRGIY-GFGFEKPSAIQKRAIVPCTTG--KDVIAQAQSGTGKTATFSVS 86
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L R+D QAL + PTRELA Q +V+ +G++ + + T+ ++
Sbjct: 87 ILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCI--GGTSVRDDQRKL 144
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
VV+GTPG + ++ L SR+K+ V DEAD ML +
Sbjct: 145 EAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQ 204
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
V+L SAT V + R +++ ++ VKK+EL+LE ++Q+ + + K + D ++
Sbjct: 205 VVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD-LY 263
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
+ + Q +IF T+ L + + + + V+ + G Q ERD I++EF+ G ++VL
Sbjct: 264 NV-VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVL 322
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
I+TD+LARG D QQV+L++NYD P E Y+HRIGR+GRFGRKGV N + +
Sbjct: 323 ITTDILARGIDVQQVSLVINYDLPSNR--------ENYIHRIGRSGRFGRKGVAINFVTE 374
Query: 443 GDDMIIMEKIERYFDIKVTEVRNSDED 469
D + E IE Y+ ++ E+ S D
Sbjct: 375 NDARQLKE-IESYYTTQIEEMPESIAD 400
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 131/397 (32%), Positives = 209/397 (52%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED + EL+ G++ E F+KPS IQ ++P+ LT R+++A+A+NG
Sbjct: 30 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNG 86
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L R++P QAL + PTRELA+Q V + +GKH GI V T
Sbjct: 87 TGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGIN--VMVTTGG 144
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T + R +++GTPG + S S V DEAD +L
Sbjct: 145 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 204
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+V+LFSATF VK+F R +++ ++ + +EL+L + QY + +E
Sbjct: 205 LLSFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLM-DELTLRGITQYYAFV-EEKQ 262
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
KV + +L ++ Q+IIF + N L K + + GY +Q+ R+++
Sbjct: 263 KVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFH 320
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
+F++G+ + L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG
Sbjct: 321 DFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRFGH 372
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
G+ NL+ + DD + KIE+ ++ + +N D+
Sbjct: 373 LGLAINLI-NWDDRFNLYKIEQELGTEIQPIPQNIDK 408
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 136/387 (35%), Positives = 214/387 (55%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+ + L P+LL+G+Y F+KPS IQ + I ++I QA++G+GKT F G
Sbjct: 42 SFDAMELQPDLLRGIYA-YGFEKPSAIQQRGI--IPFCKGLDVIQQAQSGTGKTATFCSG 98
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L ++D +L QAL + PTRELA Q +V+R +G + G+ ++ V S +
Sbjct: 99 VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV-----LL----- 265
V VV+GTPG + + + L +K+ V DEAD ML D++ LL
Sbjct: 159 GV--HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 266 ---FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
FSAT + + ++ VK++EL+LE +KQ+ V E K+ + D ++
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCD-LY 275
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
E + Q++IFV T+ L ++ + V+ G Q RD I++EF+ G ++VL
Sbjct: 276 ET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
I+TD+LARG D QQV+L++N+D P +P E YLHRIGR+GRFGRKGV N M
Sbjct: 335 ITTDLLARGIDVQQVSLVINFDLPT------QP--ENYLHRIGRSGRFGRKGVAINF-MT 385
Query: 443 GDDMIIMEKIERYFDIKVTEVRNSDED 469
+D +M I+R++++ V E+ ++ D
Sbjct: 386 SEDERMMADIQRFYNVVVEELPSNVAD 412
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 130/382 (34%), Positives = 219/382 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+++ L +LL+G+Y F+KPS IQ ++ + L+ + ++IAQA++G+GKT F +G
Sbjct: 25 SFDNMELPKDLLRGIY-SYGFEKPSAIQQRAI-IPLSKGF-DIIAQAQSGTGKTATFTVG 81
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISKR 219
+LSR+D ++ QAL I PTRELA Q +V+ +G++ I S C T T+ + +
Sbjct: 82 ILSRIDISVLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQS 141
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEVL---------- 264
VV+GTPG + + +S + ++I DEAD ML D++
Sbjct: 142 G---VHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKTI 198
Query: 265 ---LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
LFSAT + ++ +++ + VKK+EL+LE ++Q+ V E K V+ D +
Sbjct: 199 QVGLFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTD-L 257
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q++IF T+ L + + + V++ G Q++RD I++ F+ G T+V
Sbjct: 258 YET-LSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATRV 314
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG D QQV+L++N+D P + E Y+HRIGR+GRFGRKGV N +
Sbjct: 315 LITTDLLARGIDVQQVSLVINFDLPT--------NIENYIHRIGRSGRFGRKGVAINFIT 366
Query: 442 DGDDMIIMEKIERYFDIKVTEV 463
D + I +++ R+++ + E+
Sbjct: 367 DAERGQI-DELSRHYNTYIAEM 387
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 130/383 (33%), Positives = 211/383 (55%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+++GTPG + ++ + L +K+ V DEAD ML
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 206
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+V+L SAT V + ++D ++ L+LE ++Q+ + E K+ + D
Sbjct: 207 TQVVLLSATMPSDVLEVTKKFMRDPIRIX-----LTLEGIRQFYINVEREEWKLDTLCD- 260
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++
Sbjct: 261 LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 319
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N++
Sbjct: 320 VLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMV 371
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
+ D + + IE +++ + E+
Sbjct: 372 TEEDKRTLRD-IETFYNTSIEEM 393
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 132/416 (31%), Positives = 219/416 (52%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y + +P
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYAYGR-PEPG 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
Q + +++ N + +++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AFQQRKILVVMKS--NNAVVISQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
+K+LV DEAD ML+ +V+L SAT + + + D +
Sbjct: 179 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 238
Query: 288 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347
+ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 239 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEK 296
Query: 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 297 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 356
Query: 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 357 NR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 136/422 (32%), Positives = 217/422 (51%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEM 119
+L + G T D+ +K +D+ KT DT FE+ L ELL G++ E
Sbjct: 21 DLQIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDT---RGNEFEEFCLKRELLMGIF-EK 76
Query: 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179
+++PS IQ ++P+ L+ ++++A+A+NG+GKT + + +L ++DP QAL + P
Sbjct: 77 GWERPSPIQEAAIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVP 134
Query: 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 239
TRELA+Q ++ ++ KH I V T T R Q++I TPG I M
Sbjct: 135 TRELALQTSQICIELAKHLDI--RVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMD 192
Query: 240 AKKLGFSRLKILVYDEADH--------MLD----------EVLLFSATFNETVKNFVTRI 281
K S +ILV DEAD MLD ++LLFSATF TVKNF+ +
Sbjct: 193 KKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKH 252
Query: 282 VKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 341
+++ ++ + EEL+L+ V QY + E KV + +L ++ Q+IIF +
Sbjct: 253 LREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 308
Query: 342 SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV 401
L K + + GY I Q R+++ +F+ GL + L+ +D+ RG D Q VN+++
Sbjct: 309 ELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVI 368
Query: 402 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 461
N+D P E YLHRIGR+GRFG G+ NL+ +D + +IE+ ++
Sbjct: 369 NFDFPRM--------AETYLHRIGRSGRFGHLGIAINLITY-EDRFDLHRIEKELGTEIK 419
Query: 462 EV 463
+
Sbjct: 420 PI 421
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 142/425 (33%), Positives = 215/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 69 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 122
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 123 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVS 180
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 181 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHI 239
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFVT-RIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+T + K Y
Sbjct: 240 QMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHLQKPYEINL 299
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 300 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 354
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 355 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 413
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS-DE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + +S D+
Sbjct: 414 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSSIDK 465
Query: 469 DFKAA 473
+ A
Sbjct: 466 NLYVA 470
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 126/392 (32%), Positives = 205/392 (52%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L ELL G+Y E F++PS IQ S+P+ LT R+++A+A+NG
Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTG--RDILARAKNG 178
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + +L ++D + QA+ I PTRELA+Q +V +++GKH I + V T
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGG 236
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------- 262
T+ R +++GTPG I +LV DEAD +L +
Sbjct: 237 TSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEH 296
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVK-KEELSLESVKQYKVYCPDEL 311
+L+FSATF TVK+F R + N + +EL+L+ + Q+ + +E
Sbjct: 297 LISFLPESRQILMFSATFPVTVKDFKDRFLT--NPYVINLMDELTLKGITQFYAFV-EER 353
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
K+ + +L ++ Q+IIF + N L K + + GY I +Q+ R+++
Sbjct: 354 QKIHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 411
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
+F++G + L+ TD+ RG D Q VN+++N+D P + E YLHR+GR+GRFG
Sbjct: 412 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNAETYLHRVGRSGRFG 463
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL+ +D + +IE+ ++ ++
Sbjct: 464 HLGLAVNLITY-EDRFNLYRIEQELGTEIKQI 494
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 135/436 (30%), Positives = 221/436 (50%)
Query: 50 ANTSEDKSTAELDV--EGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNL 107
ANT+ S++ + + + +DE K K L+ +D KT D T FED L
Sbjct: 12 ANTNTLNSSSNYNKIDDNIILDEEWK-KKILEPLKDLRYKTE---DVTKTKGNEFEDYFL 67
Query: 108 SPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167
ELL G++ E ++KPS IQ S+P+ L +N++A+A+NG+GKT F + +L + +
Sbjct: 68 KRELLMGIF-EKGYEKPSPIQEESIPVALAG--KNILARAKNGTGKTAAFAIPLLEKCNT 124
Query: 168 NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVV 227
+ Q L + PTRELA+Q +++++GKH + +C V T T+ R ++
Sbjct: 125 HKNFIQGLILVPTRELALQTSAMIKELGKHMKV--QCMVTTGGTSLREDIMRLYNVVHIL 182
Query: 228 IGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLFSAT 269
GTPG I + S I+V DEAD +L ++L++SAT
Sbjct: 183 CGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILMYSAT 242
Query: 270 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 329
F TVK F + D +++ + +EL+L+ + QY + E KV + +L ++
Sbjct: 243 FPVTVKEFRAIYLSDAHEINLM-DELTLKGITQYYAFVK-ERQKVHCLNTLFAKL--QIN 298
Query: 330 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389
Q IIF + L K + + GY I Q R+++ +F++G + L+S+D+
Sbjct: 299 QAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLFT 358
Query: 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 449
RG D Q VN+++N+D P K+ E YLHRIGR+GR+G G+ NL+ +D +
Sbjct: 359 RGIDIQSVNVVINFDFP-KNS-------ETYLHRIGRSGRYGHLGLAINLITF-EDRFNL 409
Query: 450 EKIERYFDIKVTEVRN 465
KIE ++ + N
Sbjct: 410 YKIEVELGTEIQPIPN 425
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 139/424 (32%), Positives = 225/424 (53%)
Query: 64 EGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQK 123
EG D +++ ++ L+E D + T+ D + S F+ + L LL+G+Y F+K
Sbjct: 7 EGTQFD-TRQFDQRLNEVLDGQDEFFTSYDEVHES---FDAMGLQENLLRGIYA-YGFEK 61
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
PS IQ + ++I QA++G+GKT F G+L ++D L QAL + PTREL
Sbjct: 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTREL 119
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A Q +V+R +G + G+ V T+ + VV+GTPG + + + L
Sbjct: 120 AQQIEKVMRALGDYQGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL 177
Query: 244 GFSRLKILVYDEADHML-----DEV-----LL--------FSATFNETVKNFVTRIVKDY 285
+K+ V DEAD ML D++ LL FSAT + +
Sbjct: 178 RPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKP 237
Query: 286 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 345
++ VK++EL+LE +KQ+ V E K+ + D ++E + Q++IFV T+ L
Sbjct: 238 VRILVKRDELTLEGIKQFYVNVEKEDWKLETLCD-LYET-LAITQSVIFVNTRRKVDWLT 295
Query: 346 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 405
++ + V+ G Q RD I++EF+ G ++VLI+TD+LARG D QQV+L++N+D
Sbjct: 296 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDL 355
Query: 406 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 465
P +P E YLHRIGR+GRFGRKGV N + D ++ + I++++++ V E+ +
Sbjct: 356 PT------QP--ENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFD-IQKFYNVVVEELPS 406
Query: 466 SDED 469
+ D
Sbjct: 407 NVAD 410
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 122/391 (31%), Positives = 203/391 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T F+DL+L +LL+G++ E + KPS IQ ++P+ L R+++A+A+NG
Sbjct: 40 TEDVTATEGNDFDDLHLKRDLLRGIF-EKGYVKPSPIQEKAIPIALAG--RDIMARAKNG 96
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L + DP Q L + PTRELA+Q +V +++GK+ + + T
Sbjct: 97 TGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNV--QVMASTGG 154
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------- 262
T+ R +++ TPG + S ++ DEAD +L +
Sbjct: 155 TSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQ 214
Query: 263 ----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+LLFSATF TVK+F ++ ++ + EEL+L+ V QY + +E
Sbjct: 215 LINFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLM-EELTLKGVTQYYAFV-EERQ 272
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K+ + +L ++ Q+IIF + N L K + + GY I +Q R+++
Sbjct: 273 KIHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFH 330
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
+F++G + L+S+D+ RG D Q VN+++N+D P KH E YLHRIGR+GRFG
Sbjct: 331 DFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFP-KHS-------ETYLHRIGRSGRFGH 382
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL+ +D + KIE+ ++ +
Sbjct: 383 LGLAINLITY-EDRFSLYKIEQELGTEIKPI 412
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 146/447 (32%), Positives = 221/447 (49%)
Query: 50 ANTSEDKSTAELDVEGLTI---DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLN 106
ANT + + + TI D+ KK K +D IKT D T FED
Sbjct: 48 ANTINNGTQQQAQSMTTTIKPGDDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYC 102
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D
Sbjct: 103 LKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLD 159
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
QA+ I PTRELA+Q ++ ++ KH G A T TN R T V
Sbjct: 160 LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHV 218
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------------------VLLFSA 268
VI TPG I + ++++V DEAD +L + +LL+SA
Sbjct: 219 VIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 278
Query: 269 TFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 327
TF +V+ F+ + + K Y + EEL+L+ V QY Y E KV + L +
Sbjct: 279 TFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--Q 333
Query: 328 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387
+ Q+IIF + L K + GY I QE R+++ +F++GL + L+ TD+
Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393
Query: 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 447
RG D Q VN+++N+D P E YLHRIGR+GRFG G+ NL+ DD
Sbjct: 394 FTRGIDIQAVNVVINFDFPKL--------AETYLHRIGRSGRFGHLGLAINLITY-DDRF 444
Query: 448 IMEKIERYFDIKVTEV-RNSDEDFKAA 473
++ IE ++ + N D+ A
Sbjct: 445 NLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 120/358 (33%), Positives = 199/358 (55%)
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
P++ +AI LP I Y ++IAQA++G+GKT F + +L +++ +LKA QAL + PTREL
Sbjct: 74 PTRQRAI-LPCI--KGY-DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 129
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A Q +V+ +G + G + + + + K +++GTPG + ++ + L
Sbjct: 130 AQQIQKVVMALGDYMGASCHACIGGTNVR-AEVQKLQMEAPHIIVGTPGRVFDMLNRRYL 188
Query: 244 GFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDY 285
+K+ V DEAD ML +V+L SAT V + ++D
Sbjct: 189 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDP 248
Query: 286 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 345
++ VKKEEL+LE ++Q+ + E K+ + D ++E + Q +IF+ T+ L
Sbjct: 249 IRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-LYET-LTITQAVIFINTRRKVDWLT 306
Query: 346 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 405
+ + + V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D QQV+L++NYD
Sbjct: 307 EKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 366
Query: 406 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
P E Y+HRIGR GRFGRKGV N++ + D + + IE +++ + E+
Sbjct: 367 PTNR--------ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRD-IETFYNTSIEEM 415
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 141/425 (33%), Positives = 213/425 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D+ KK K +D IKT D T FED L ELL G++ EM ++KPS IQ
Sbjct: 70 DDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQ 123
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q
Sbjct: 124 EESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 181
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH G A T TN R T VVI TPG I + +
Sbjct: 182 QICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 240
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFV-TRIVKDYNQLF 289
+++V DEAD +L + +LL+SATF +V+ F+ + + K Y
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
+ EEL+L+ V QY Y E KV + L ++ Q+IIF + L K +
Sbjct: 301 M--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKIS 355
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
GY I QE R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P
Sbjct: 356 QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL- 414
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
E YLHRIGR+GRFG G+ NL+ DD ++ IE ++ + N D+
Sbjct: 415 -------AETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDK 466
Query: 469 DFKAA 473
A
Sbjct: 467 SLYVA 471
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 127/386 (32%), Positives = 201/386 (52%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y T+FE++ + LL+G+Y F+KPS IQ + IL R++I Q+++G+GKT
Sbjct: 13 YEICTSFENIGIDEGLLRGIYA-YGFEKPSAIQQRGIKPILNG--RDVILQSQSGTGKTC 69
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
F +G L+ V+ NL Q + + PTRELA Q +V + + +T C + +
Sbjct: 70 VFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMS--D 127
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
K V+ GTPG I ++ + L +K LV DEAD ML+
Sbjct: 128 DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFL 187
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317
+++L SAT + V + + ++ VK++EL+LE +KQ+ V E K +
Sbjct: 188 SPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETL 247
Query: 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377
D ++E + Q ++F T+ L K + + + V + Q ERD I+ +F+
Sbjct: 248 AD-LYE-SLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQC 305
Query: 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437
+VLISTD+ RG D Q+V+L+VNYD P E Y+HRIGR+GRFGRKGV
Sbjct: 306 KFRVLISTDIWGRGLDVQEVSLVVNYDLPNSR--------ESYIHRIGRSGRFGRKGVAI 357
Query: 438 NLLMDGDDMIIMEKIERYFDIKVTEV 463
N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 358 NFVKN-DDIKILRDIEQYYSTQIDEM 382
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 127/386 (32%), Positives = 201/386 (52%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y T+FE++ + LL+G+Y F+KPS IQ + IL R++I Q+++G+GKT
Sbjct: 13 YEICTSFENIGIDEGLLRGIYA-YGFEKPSAIQQRGIKPILNG--RDVILQSQSGTGKTC 69
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
F +G L+ V+ NL Q + + PTRELA Q +V + + +T C + +
Sbjct: 70 VFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMS--D 127
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
K V+ GTPG I ++ + L +K LV DEAD ML+
Sbjct: 128 DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFL 187
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317
+++L SAT + V + + ++ VK++EL+LE +KQ+ V E K +
Sbjct: 188 SPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETL 247
Query: 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377
D ++E + Q ++F T+ L K + + + V + Q ERD I+ +F+
Sbjct: 248 AD-LYE-SLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQC 305
Query: 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437
+VLISTD+ RG D Q+V+L+VNYD P E Y+HRIGR+GRFGRKGV
Sbjct: 306 KFRVLISTDIWGRGLDVQEVSLVVNYDLPNSR--------ESYIHRIGRSGRFGRKGVAI 357
Query: 438 NLLMDGDDMIIMEKIERYFDIKVTEV 463
N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 358 NFVKN-DDIKILRDIEQYYSTQIDEM 382
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 125/382 (32%), Positives = 197/382 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FE+ L +LL G++ E F+KPS IQ S+P+ LT R+++A+A+NG
Sbjct: 38 TEDVTNTKGLEFENFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNG 94
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L ++P + Q L + PTRELA+Q +V + +GKH GI V T
Sbjct: 95 TGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGIN--VMVTTGG 152
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T R +V+GTPG I S + + DEAD +L
Sbjct: 153 TTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQ 212
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
+V+LFSATF +VK F + + + ++ + +EL+L + QY + +E
Sbjct: 213 LLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLM-DELTLRGITQYYAFV-EEKQ 270
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
KV + +L ++ Q+IIF + N L K + + GY Q+ R+++
Sbjct: 271 KVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFH 328
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
+F++G+ + L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GR+G
Sbjct: 329 DFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRYGH 380
Query: 433 KGVVFNLLMDGDDMIIMEKIER 454
G+ NL+ +D + IER
Sbjct: 381 LGLAINLI-SWEDRFNLYNIER 401
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 124/372 (33%), Positives = 191/372 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T T FED L ELL G++ E F++PS IQ S+P+ L+ R+++A+A+NG
Sbjct: 35 TEDVTKTRGTEFEDYYLKRELLMGIF-EAGFERPSPIQEESIPIALSG--RDILARAKNG 91
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L +VD Q L + PTRELA+Q +V + +GKH + + V T
Sbjct: 92 TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNV--KVMVTTGG 149
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T R T +V+GTPG + FS V DEAD +L
Sbjct: 150 TTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQ 209
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
++ L+SATF VKNF+ + + ++ + +EL+L V QY + DE
Sbjct: 210 LLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFV-DESQ 267
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
KV + +L ++ Q+IIF + N L K + + GY +Q R+++
Sbjct: 268 KVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFH 325
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
F++G+ + L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG
Sbjct: 326 NFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRFGH 377
Query: 433 KGVVFNLLMDGD 444
+G+ + + D
Sbjct: 378 RGLAISFISWAD 389
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 145/447 (32%), Positives = 221/447 (49%)
Query: 50 ANTSEDKSTAELDVEGLTI---DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLN 106
ANT + + + TI D+ KK K +D IKT D T FED
Sbjct: 48 ANTINNGTQQQAQSMTTTIKPGDDWKKTLKL--PPKDLRIKT---SDVTSTKGNEFEDYC 102
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D
Sbjct: 103 LKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLD 159
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
QA+ I PTRELA+Q ++ ++ KH G A T TN R T V
Sbjct: 160 LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHV 218
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------------------VLLFSA 268
VI TPG I + ++++V DEA+ +L + +LL+SA
Sbjct: 219 VIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSA 278
Query: 269 TFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 327
TF +V+ F+ + + K Y + EEL+L+ V QY Y E KV + L +
Sbjct: 279 TFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL--Q 333
Query: 328 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387
+ Q+IIF + L K + GY I QE R+++ +F++GL + L+ TD+
Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393
Query: 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 447
RG D Q VN+++N+D P E YLHRIGR+GRFG G+ NL+ DD
Sbjct: 394 FTRGIDIQAVNVVINFDFPKL--------AETYLHRIGRSGRFGHLGLAINLITY-DDRF 444
Query: 448 IMEKIERYFDIKVTEV-RNSDEDFKAA 473
++ IE ++ + N D+ A
Sbjct: 445 NLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 134/396 (33%), Positives = 206/396 (52%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG
Sbjct: 88 TSDVTATKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNG 144
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQA-LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTD 209
+GK+ +++ +L R+D + QA + I PTRELA+Q ++ ++ KH G A T
Sbjct: 145 TGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVSQICIQVSKHMGGVKVMAT-TG 203
Query: 210 STNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------- 262
TN R T VVI TPG I + +++++V DEAD +L +
Sbjct: 204 GTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMME 263
Query: 263 -----------VLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310
+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY Y E
Sbjct: 264 EILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYYAYVT-E 320
Query: 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 370
KV + L ++ Q+IIF + L K + GY I QE R+++
Sbjct: 321 RQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRV 378
Query: 371 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 430
+F++GL + L+ TD+ RG D Q VN+++N+D P K G E YLHRIGR+GRF
Sbjct: 379 FHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFP-KLG-------ETYLHRIGRSGRF 430
Query: 431 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 466
G G+ NL+ DD ++ IE ++ + +S
Sbjct: 431 GHLGLAINLITY-DDRFNLKGIEEQLGTEIKPIPSS 465
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 132/417 (31%), Positives = 219/417 (52%)
Query: 65 GLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKP 124
G T ++K + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KP
Sbjct: 9 GGTTGSARK--RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKP 63
Query: 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184
S IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA
Sbjct: 64 SAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 121
Query: 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244
+Q +V + V + V A+ + G + + + L
Sbjct: 122 VQIQKVGTSKSLPVKMKELHKAMGSFKQEVDLPAGHEV-ARCISGIQLQLLYMIRRRSLR 180
Query: 245 FSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYN 286
+K+LV DEAD ML+ +V+L SAT + + + D
Sbjct: 181 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 240
Query: 287 QLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346
++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 241 RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTE 298
Query: 347 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 299 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 358
Query: 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 359 NNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 406
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 134/417 (32%), Positives = 223/417 (53%)
Query: 65 GLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKP 124
G T ++K + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KP
Sbjct: 8 GGTTGSARK--RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKP 62
Query: 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184
S IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA
Sbjct: 63 SAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 120
Query: 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244
+Q ++K TG E VP V ++ + + + + + + L
Sbjct: 121 VQ----IQKSLLATG---EVPVPPPVKCTVSSWEQCRLACFLSLFILQSEIDMIRRRSLR 173
Query: 245 FSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYN 286
+K+LV DEAD ML+ +V+L SAT + + + D
Sbjct: 174 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 233
Query: 287 QLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346
++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK L +
Sbjct: 234 RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTE 291
Query: 347 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406
+++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 292 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 351
Query: 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 352 NNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 399
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 134/403 (33%), Positives = 213/403 (52%)
Query: 64 EGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQK 123
EG D +++ ++ L+E + + T+ D + S F+ + L LL+G+Y F+K
Sbjct: 7 EGTQFD-ARQFDQKLNEVLEGQDEFFTSYDDVHES---FDAMGLQENLLRGIYA-YGFEK 61
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
PS IQ + ++I QA++G+GKT F G+L ++D +L QAL + PTREL
Sbjct: 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTREL 119
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A Q +V+R +G + G+ V T+ + VV+GTPG + + + L
Sbjct: 120 AQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSL 177
Query: 244 GFSRLKILVYDEADHML-----DEV-----LL--------FSATFNETVKNFVTRIVKDY 285
+K+ V DEAD ML D++ LL FSAT + +
Sbjct: 178 RADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKP 237
Query: 286 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 345
++ VK++EL+LE +KQ+ V E K+ + D ++E + Q++IFV T+ L
Sbjct: 238 VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD-LYET-LAITQSVIFVNTRRKVDWLT 295
Query: 346 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 405
++ + V+ G Q RD I++EF+ G ++VLI+TD+LARG D QQV+L++N+D
Sbjct: 296 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDL 355
Query: 406 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 448
P +P E YLHRIGR+GRFGRKGV N + D+ ++
Sbjct: 356 PT------QP--ENYLHRIGRSGRFGRKGVAINFVTRDDERML 390
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 131/398 (32%), Positives = 203/398 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L +LLKG+Y E F+KPS IQ S+P+ LT +++A+A+NG
Sbjct: 115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNG 171
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + +L ++DPN QA+ + PTRELA+Q +V +++ K+ I + V T
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNI--QVMVTTGG 229
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T+ R +++GTPG I +LV DEAD +L
Sbjct: 230 TSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEE 289
Query: 262 ---------EVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+ L+FSATF TVK F R + K Y + ++L+L V QY + +E
Sbjct: 290 LIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQYYAFV-EER 346
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
KV + +L ++ Q+IIF + N L K + + GY I +Q+ R+++
Sbjct: 347 QKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 404
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
EF++G + L+ TD+ RG D Q VN+++N+D P E YLHR+GR+GRFG
Sbjct: 405 HEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------RTSESYLHRVGRSGRFG 456
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 468
G+ NL+ +D M + E+ ++ + N D+
Sbjct: 457 HLGLAVNLVTY-EDRFKMYQTEQELGTEIKPIPSNIDQ 493
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 131/385 (34%), Positives = 197/385 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L
Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSL 62
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS-- 217
+L +DP LKAPQ L + PTRELA+Q E + KH + A+ V +
Sbjct: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV--------- 263
++ P Q+V+GTPG + + L S+L LV DEAD ML ++V
Sbjct: 123 RQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179
Query: 264 ----LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKVMVIR 318
LFSAT E ++ R +K+ ++ ++ + + Q Y + +V
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV-- 237
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
R E E IIFVRTKN+ + +AL+ GY + G Q R++ ++ KDG
Sbjct: 238 -RFLE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV ARG D ++++L+VNYD P+ D E Y+HRIGR GR GR G
Sbjct: 296 LDILIATDVAARGLDVERISLVVNYDIPM--------DSESYVHRIGRTGRAGRAGRAL- 346
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEV 463
L ++ + ++ IER + + EV
Sbjct: 347 LFVENRERRLLRNIERTMKLTIPEV 371
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 130/400 (32%), Positives = 211/400 (52%)
Query: 82 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR 141
E++ + T G P S F+D+ ++ ++L+G+Y + ++KPS+IQ +L IL R
Sbjct: 7 EENLVFETTKGIKPIKS---FDDMGMNDKVLRGVY-DYGYKKPSEIQQRALVPILKG--R 60
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
++IAQA++G+GKT+ + + V+ + + Q L + P+RELA Q + ++ +G HT I
Sbjct: 61 DVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQ 120
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + S I K V GTPG + + L +K+LV DE+D ML
Sbjct: 121 AHACIGGKSIGE-DIKKLER-GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS 178
Query: 262 ------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 303
+V L SAT + + + + D ++ VK +EL+LE +KQY
Sbjct: 179 KGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQY 238
Query: 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363
V E K + D L + Q IIF T+ L + ++ + V+++ G
Sbjct: 239 YVDVDKEEWKFDTLCDLYGRL--TINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKR 296
Query: 364 QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHR 423
Q+ERD I+ +F+ ++VLI++DV ARG D Q V+ ++NYD P P E+Y+HR
Sbjct: 297 QKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNN------P--ELYIHR 348
Query: 424 IGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
IGRAGRFGR+GV N + D M ++ IER++ K+ E+
Sbjct: 349 IGRAGRFGREGVAINFVKSSD-MKDLKDIERHYGTKIREM 387
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 134/413 (32%), Positives = 209/413 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
DE+ K L A+D KT DT FED L +LL G++ E ++KPS IQ
Sbjct: 16 DENWKAGLNLP-AKDRRFKTADVTDT---KGVEFEDFCLGRDLLMGIF-EKGWEKPSPIQ 70
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+ + LT ++++A+A+NG+GKT + + ++ ++ P LKA QA+ I PTRELA+Q
Sbjct: 71 EASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTS 128
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH I + V T T+ R T +VI TPG I M
Sbjct: 129 QICVELSKH--IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFVTRIVKDYNQLFV 290
K LV DEAD +L + V+L+SATF TV +F+ + + ++ +
Sbjct: 187 KTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINL 246
Query: 291 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD 350
EEL+L V QY + E KV + +L ++ Q+IIF + L K + +
Sbjct: 247 M-EELTLLGVTQYYAFV-QEKQKVHCLNTLFRKL--QINQSIIFCNSTQRVELLAKKITE 302
Query: 351 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG 410
GY I Q R+++ +F+ G + L+ +D+L RG D Q VN+++N+D P
Sbjct: 303 IGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFP---- 358
Query: 411 KHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+ E YLHRIGR+GRFG GV NL+ +D + +IE+ ++ +
Sbjct: 359 ----RNAETYLHRIGRSGRFGHLGVAINLITY-EDRHTLRRIEQELRTRIEPI 406
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 134/413 (32%), Positives = 209/413 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
DE+ K L A+D KT DT FED L +LL G++ E ++KPS IQ
Sbjct: 16 DENWKAGLNLP-AKDRRFKTADVTDT---KGVEFEDFCLGRDLLMGIF-EKGWEKPSPIQ 70
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+ + LT ++++A+A+NG+GKT + + ++ ++ P LKA QA+ I PTRELA+Q
Sbjct: 71 EASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTS 128
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH I + V T T+ R T +VI TPG I M
Sbjct: 129 QICVELSKH--IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFVTRIVKDYNQLFV 290
K LV DEAD +L + V+L+SATF TV +F+ + + ++ +
Sbjct: 187 KTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINL 246
Query: 291 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD 350
EEL+L V QY + E KV + +L ++ Q+IIF + L K + +
Sbjct: 247 M-EELTLLGVTQYYAFV-QEKQKVHCLNTLFRKL--QINQSIIFCNSTQRVELLAKKITE 302
Query: 351 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG 410
GY I Q R+++ +F+ G + L+ +D+L RG D Q VN+++N+D P
Sbjct: 303 IGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFP---- 358
Query: 411 KHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+ E YLHRIGR+GRFG GV NL+ +D + +IE+ ++ +
Sbjct: 359 ----RNAETYLHRIGRSGRFGHLGVAINLITY-EDRHTLRRIEQELRTRIEPI 406
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 130/392 (33%), Positives = 202/392 (51%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
V T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 77 VRTTDVTATKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 133
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ + PTRELA+Q ++ M KH G A T
Sbjct: 134 NGTGKSGAYLIPLLERIDLKKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMAT-T 192
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------ 262
TN R V+I TPG I + ++++ V DEAD +L +
Sbjct: 193 GGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLI 252
Query: 263 ------------VLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYCPD 309
+LL+SATF +V+ F+T+ + K Y + +EL+L+ + QY Y
Sbjct: 253 EDIISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLM--DELTLKGITQYYAYVT- 309
Query: 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 369
E KV + L ++ Q+IIF + L K + GY I +QE R++
Sbjct: 310 ERQKVHCLNTLFSRL--QINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNR 367
Query: 370 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 429
+ +F++GL + L+ TD+ RG D Q VN+++N+D P + E YLHRIGR+GR
Sbjct: 368 VFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGR 419
Query: 430 FGRKGVVFNLLMDGDDMIIMEKIERYF--DIK 459
+G G+ NL+ +D ++ IE DIK
Sbjct: 420 YGHLGLAINLITS-EDRFNLKGIEDQLMTDIK 450
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 126/391 (32%), Positives = 199/391 (50%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L +LL+G+Y E F+KPS IQ S+P+ LT +++A+A+NG
Sbjct: 145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNG 201
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + L ++DP QA+ + PTRELA+Q +V +++ K+ I E V T
Sbjct: 202 TGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGG 259
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261
T+ R +++GTPG I +LV DEAD +L
Sbjct: 260 TSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEE 319
Query: 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
++L+FSATF TVK+F R +K + ++L+L V QY + +E
Sbjct: 320 LIQFLPESRQILMFSATFPVTVKSFKDRYLKK-PYIINLMDQLTLMGVTQYYAFV-EERQ 377
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
KV + +L ++ Q+IIF + N L K + + GY I +Q+ R+++
Sbjct: 378 KVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFH 435
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432
+F++G + L+ TD+ RG D Q VN+++N+D P E YLHR+GR+GRFG
Sbjct: 436 DFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------RTSESYLHRVGRSGRFGH 487
Query: 433 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
G+ NL+ +D M + E+ ++ +
Sbjct: 488 LGLAVNLVTY-EDRFKMYQTEQELGTEIKPI 517
>UNIPROTKB|Q58DE5 [details] [associations]
symbol:DDX19L "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
UniGene:Bt.49612 HOVERGEN:HBG107989 EMBL:DAAA02045970 EMBL:BT021652
IPI:IPI00694012 SMR:Q58DE5 Ensembl:ENSBTAT00000027604
Uniprot:Q58DE5
Length = 394
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 112/296 (37%), Positives = 172/296 (58%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML------DE-- 262
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ D+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 263 -----------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311
+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRD 317
Query: 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 367
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 318 EKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQR 371
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 299 (110.3 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 69/203 (33%), Positives = 118/203 (58%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT + ++ + +++ +++V E +L+L ++Q+ V +E AK I D
Sbjct: 231 QVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKL-EEKAKNRKINDL 289
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ + A+ L + L++ + I G QEER K K FKD +
Sbjct: 290 LDSL--EFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+ ++TDV RG D ++VN+++NYD P PD YLHR+GRAGRFG KG+
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDS------PDS--YLHRVGRAGRFGTKGLAITFS 399
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
+D I++KI+ F++ +TE+
Sbjct: 400 SSEEDSQILDKIQERFEVNITEL 422
Score = 198 (74.8 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 61/220 (27%), Positives = 102/220 (46%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSP 109
A+ ED E + E + ++++ D AE+ K+ G +T F D L P
Sbjct: 2 ASAQEDLIDYEEEEELVQDQPAQEITPAADTAENGE-KSDKKGSYVGIHSTGFRDFLLKP 60
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELL+ + + F+ PS++Q + +P + +++ QA++G GKT FVL L +++P
Sbjct: 61 ELLRAI-TDSGFEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKH-----TGIT-SECAVPTDSTNYVPISKRPPVT 223
L +C TRELA Q + K+ T + + D + SK P
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSP--- 174
Query: 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
+V+ TPG + + K L + +K V DE D +L+ V
Sbjct: 175 -HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESV 213
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 118/389 (30%), Positives = 200/389 (51%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P SA TF DL + P +L+ + ++ ++ P+ IQA ++P ++ +++ A+ G+GK
Sbjct: 7 SPAASAATFADLQIHPRVLRAIG-DVGYESPTAIQAATIPALMAGS--DVVGLAQTGTGK 63
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
T F + MLS++D K PQAL + PTRELA+Q E + G + + + S+
Sbjct: 64 TAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------ 261
V ++ AQVV+GTPG + + L SR+ LV DEAD ML
Sbjct: 124 VQLAGLRR-GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILS 182
Query: 262 ------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 315
+V LFSAT ++ + + D ++ K + E++ Q + ++A+ M
Sbjct: 183 ETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKM 238
Query: 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 375
R+ E+ E I+FVRTK + + + L+ G+ I G Q +R++ + +
Sbjct: 239 DALTRVLEV-EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALR 297
Query: 376 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 435
DG +L++TDV ARG D ++++ ++NYD P H D E Y+HRIGR GR GR G
Sbjct: 298 DGDIDILVATDVAARGLDVERISHVLNYDIP--H------DTESYVHRIGRTGRAGRSGA 349
Query: 436 VFNLLMDGDDMIIMEKIERYFDIKVTEVR 464
+ + ++ +++ IE+ +TE +
Sbjct: 350 AL-IFVSPRELHLLKAIEKATRQTLTEAQ 377
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 119/372 (31%), Positives = 193/372 (51%)
Query: 83 DSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRN 142
D +TVT + A F L L PE L + + F + IQA+++P +L ++
Sbjct: 3 DQKTETVTEPE-----AVAFASLGL-PENLLSAVLSIGFTSATDIQALTIPPLLAG--KD 54
Query: 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GIT 201
++ +A+ G+GKT F L L+++D ++K PQ + + PTRELA+Q E + GK G+
Sbjct: 55 VLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGL- 113
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
A +Y P ++ AQVV+GTPG + + K L L++ V DEAD ML+
Sbjct: 114 -RVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLN 172
Query: 262 ------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 303
++ LFSAT ++ R +KD + V + + ++ QY
Sbjct: 173 MGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQY 232
Query: 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363
+ + K+ + +RI E+ E IIFVRT+N + + L+ GY + G
Sbjct: 233 -AWKVSGITKMTAL-ERIAEVVE-YDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLN 289
Query: 364 QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHR 423
Q +R++ + + K G + +L++TDV+ARG D +++L++NYD P G D E Y+HR
Sbjct: 290 QAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLP---G-----DNEAYVHR 341
Query: 424 IGRAGRFGRKGV 435
IGR GR GR+G+
Sbjct: 342 IGRTGRAGREGM 353
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 114/332 (34%), Positives = 183/332 (55%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
+V+GTPG + ++ + L +K+ V DEAD ML
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 208
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+V+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-L 267
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G ++V
Sbjct: 268 YET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHL 413
LI+TD+LARG D QQV+L++NYD P ++
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYI 358
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 121/374 (32%), Positives = 194/374 (51%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG I ++ K L ++ +V DEAD ML+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K + R
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFDVLTR 233
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G +
Sbjct: 234 LLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+ L
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIAM-LF 343
Query: 441 MDGDDMIIMEKIER 454
+ + ++ IER
Sbjct: 344 VTPRESGQLKNIER 357
>SGD|S000002242 [details] [associations]
symbol:SUB2 "Component of the TREX complex required for
nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
[GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
[GO:0000346 "transcription export complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
Length = 446
Score = 294 (108.6 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 68/202 (33%), Positives = 114/202 (56%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ R +++ ++FV E +L+L ++QY + +E K +
Sbjct: 242 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-EEREKNRKLAQL 300
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ +L + Q IIFV++ A+ L K L + T+ G QEER K FKD +
Sbjct: 301 LDDL--EFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKR 358
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+ +STDV RG D +++NL +NYD L + + YLHR+GRAGRFG KG+ + +
Sbjct: 359 ICVSTDVFGRGIDIERINLAINYD--------LTNEADQYLHRVGRAGRFGTKGLAISFV 410
Query: 441 MDGDDMIIMEKIERYFDIKVTE 462
+D ++ KI+ FD+K+ E
Sbjct: 411 SSKEDEEVLAKIQERFDVKIAE 432
Score = 189 (71.6 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 54/210 (25%), Positives = 93/210 (44%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTP--YTS--ATTFEDLNLSPELLKGL 115
E+ ++ E+ + E + GD Y +T F+D L PEL + +
Sbjct: 18 EIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAI 77
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
++ F+ PS++Q ++P + +++ QA++G GKT FVL L ++DP +
Sbjct: 78 -IDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVV 134
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAV--PTDSTNYVPISKRPPVTAQVVIGTPGT 233
IC RELA Q + K+ T + + K +V+ TPG
Sbjct: 135 VICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGR 194
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
+K + K + S +K V DE D +L+E+
Sbjct: 195 LKALVREKYIDLSHVKNFVIDECDKVLEEL 224
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 426 (155.0 bits), Expect = 7.2e-40, P = 7.2e-40
Identities = 121/384 (31%), Positives = 196/384 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LS LL+ L E+ ++KP+ IQ+ S+ ++ ++++ QA+ G+GKT F L
Sbjct: 7 TFRELGLSENLLRALD-ELGYEKPTPIQSASIDPLMAG--KDILGQAQTGTGKTGAFALP 63
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--K 218
+L++V PQ L + PTRELA+Q E K + + ++ K
Sbjct: 64 LLNKVTSQT-TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV---------- 263
R P QV++GTPG + M L L+ LV DEAD ML D++
Sbjct: 123 RGP---QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQ 179
Query: 264 ---LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
LFSAT E +K + +K+ + + +++S++Q V ++R
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVR-- 237
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ E+ G IIFVRT+NS L + L+ GY + + G Q+ R++ V++ K+G
Sbjct: 238 VLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLD 296
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+LI+TDV ARG D +++ +VNYD P D E Y+HRIGR GR GR G+ L
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPY--------DTEAYVHRIGRTGRAGRTGMAI-LF 347
Query: 441 MDGDDMIIMEKIERYFDIKVTEVR 464
+ +M ++ IER + +++ ++
Sbjct: 348 VTSREMRMLRTIERATNSRISPMK 371
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 125/386 (32%), Positives = 188/386 (48%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A +F LNL PELL L M F + IQA SLP IL +++I Q + GSGKT F
Sbjct: 2 NANSFAALNLKPELLANLET-MGFATMTPIQAQSLPAILKG--QDVIGQGKTGSGKTAAF 58
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK--HT-GITSECA-VPTDSTNY 213
LG+LS ++ QAL +CPTRELA Q +R +G+ H + + C +P
Sbjct: 59 GLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMG---- 114
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------ 261
P A +++GTPG I +S ++ S L LV DEAD ML+
Sbjct: 115 -PQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIA 173
Query: 262 ------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL-SLESVKQYKVYCPDELAKV 314
+ LLFSAT+ +++ + + N L +K E S++QY A+
Sbjct: 174 AAPAERQTLLFSATYPASIEQIAQSVTR--NALMIKVEATHDTSSIRQYFYKVEGSAARD 231
Query: 315 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 374
+ + L + +++F TK + AL G+ V + G Q ERD+ + +F
Sbjct: 232 EALETLL--LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQF 289
Query: 375 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434
+ +L++TDV ARG D ++ + NYD L D EV++HRIGR GR G KG
Sbjct: 290 ANKSISILVATDVAARGLDVDNLDAVFNYD--------LSRDPEVHVHRIGRTGRAGSKG 341
Query: 435 VVFNLLMDGDDMIIMEKIERYFDIKV 460
+ F+ D + + + I+ Y DI +
Sbjct: 342 LAFSFFSDNESYRVAQ-IDEYMDIAI 366
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 120/385 (31%), Positives = 196/385 (50%)
Query: 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156
TS+ F L+L +L+K L + +++ + IQA +LP +L +++I +A+ GSGKT
Sbjct: 7 TSSLAFSSLSLKQDLVKNLS-SLGYEQMTPIQAKTLPELLKG--KDVIGEAKTGSGKTAA 63
Query: 157 FVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVP 215
F L +L++++ Q++ ICPTRELA Q + LRK+ + GI + + T + P
Sbjct: 64 FGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLAR--GIHNIKILTLCGGTPFGP 121
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
A V++GTPG +++ + L L +LV DEAD ML+
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFV-KKEELSLESVKQYKVYCPDELAKVMV 316
+ LLFSATF + +K+ I+ D + + E+ S S K +KV D+ +
Sbjct: 182 PLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRLDAL- 240
Query: 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
R+ LG ++ T IF TK + AL G+ V + G Q +RD+ + F +
Sbjct: 241 ---RLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFAN 297
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+L++TDV ARG D ++L++NY H+ D EV++HRIGR GR G G+
Sbjct: 298 KSASILVATDVAARGLDIDSLDLVINY--------HIARDSEVHVHRIGRTGRAGSTGIA 349
Query: 437 FNLLMDGDDMIIMEKIERYFDIKVT 461
++L D + + +E Y + +T
Sbjct: 350 YSLFSDKESYKV-GLLEDYLEAVIT 373
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 120/385 (31%), Positives = 196/385 (50%)
Query: 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156
TS+ F L+L +L+K L + +++ + IQA +LP +L +++I +A+ GSGKT
Sbjct: 7 TSSLAFSSLSLKQDLVKNLS-SLGYEQMTPIQAKTLPELLKG--KDVIGEAKTGSGKTAA 63
Query: 157 FVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVP 215
F L +L++++ Q++ ICPTRELA Q + LRK+ + GI + + T + P
Sbjct: 64 FGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLAR--GIHNIKILTLCGGTPFGP 121
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
A V++GTPG +++ + L L +LV DEAD ML+
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFV-KKEELSLESVKQYKVYCPDELAKVMV 316
+ LLFSATF + +K+ I+ D + + E+ S S K +KV D+ +
Sbjct: 182 PLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRLDAL- 240
Query: 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
R+ LG ++ T IF TK + AL G+ V + G Q +RD+ + F +
Sbjct: 241 ---RLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFAN 297
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+L++TDV ARG D ++L++NY H+ D EV++HRIGR GR G G+
Sbjct: 298 KSASILVATDVAARGLDIDSLDLVINY--------HIARDSEVHVHRIGRTGRAGSTGIA 349
Query: 437 FNLLMDGDDMIIMEKIERYFDIKVT 461
++L D + + +E Y + +T
Sbjct: 350 YSLFSDKESYKV-GLLEDYLEAVIT 373
>ASPGD|ASPL0000065093 [details] [associations]
symbol:AN7659 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0044614 "nuclear
pore cytoplasmic filaments" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0000822 "inositol hexakisphosphate binding" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 EMBL:BN001304 EMBL:AACD01000130 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_680928.1 ProteinModelPortal:Q5AVM1
EnsemblFungi:CADANIAT00000783 GeneID:2869488 KEGG:ani:AN7659.2
OMA:PQAICLA OrthoDB:EOG4B2X5R Uniprot:Q5AVM1
Length = 477
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 128/400 (32%), Positives = 202/400 (50%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLY-VEMKFQKPSKIQAISLPMILTPPYRNL-IAQARNG 150
+ P S FEDL L P +L+GL + + + +A+ L ++ PP + +Q+ G
Sbjct: 62 NNPLYSVKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPL-LMGNPPKNLVGQSQSGTG 120
Query: 151 SGKTTCF-VLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVP 207
+L L K PQAL + PTRELA Q + V++ MGK G+ AVP
Sbjct: 121 KTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHIGTAVP 180
Query: 208 TDSTNYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKIL--VYDE---ADHML- 260
D TN P V IKK M A KL L + D+ D +
Sbjct: 181 AD-TNARPTRMEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEADNMLDQQGLGDQCIR 239
Query: 261 -------D-EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 312
D +V+LFSATF V + ++ N+L ++ EEL++E +KQ + C E
Sbjct: 240 VKALLPRDIQVVLFSATFPAHVHQYASKFAPAANELTLQHEELTVEGIKQLYLDCASEED 299
Query: 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372
K + +++ L +G +IIFV+T+ SA + + + G+ V ++ G +RD+I+
Sbjct: 300 KYRTLV-QLYGL-LTVGSSIIFVKTRASAVEIERRMVAEGHTVASLTGGIEGSQRDQIID 357
Query: 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP---DCEVYLHRIGRAGR 429
+F+ G +VLI+T+VLARG D V++++NYD P H P D + YLHRIGR GR
Sbjct: 358 QFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGRTGR 417
Query: 430 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
FGR GV + + + ++ ++ +I++YF+ + + D D
Sbjct: 418 FGRVGVSISFVSNREEWEMLNQIQKYFNTDIQRIDTKDWD 457
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 123/385 (31%), Positives = 193/385 (50%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L P ++ + V +++PS IQ S+P+IL ++I QA+ G+GKT F L +
Sbjct: 8 FAALELHPNIVAAV-VATGYEEPSAIQQQSIPIILAG--HDMIGQAQTGTGKTAAFALPI 64
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRP 220
L R+DP+ + PQAL + PTRELA+Q K G+T AV P K
Sbjct: 65 LHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTV-VAV-YGGAPMGPQLKAI 122
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------EVL--------- 264
AQ+V+ TPG + + + + + LV DEAD ML EV+
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 265 --LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
LFSAT ++++ R +KD + ++ + ++ +++Q + + V+ +
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLS--LL 240
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
E+ E I+FVRTK + L AL+ GY+ + G Q +R++++ KDG ++
Sbjct: 241 EV-EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
++TDV ARG D ++ + N D P D E Y+HRIGR GR GR+G LL+
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPY--------DPESYVHRIGRTGRAGREGRAL-LLVT 350
Query: 443 GDDMIIMEKIERYFDIKVTEVRNSD 467
+ +++ IER KV EVR D
Sbjct: 351 PRERRMLQVIERVTGQKVAEVRLPD 375
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 116/358 (32%), Positives = 181/358 (50%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ L L LLK + ++ F+ P+ IQ ++P+IL NL+ QA G+GKT ++L +
Sbjct: 4 FKKLGLITPLLKAVN-DLGFEMPTPIQKEAIPLILEG--HNLVGQAPTGTGKTAAYLLPV 60
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+ KA Q L + PTRELA+Q + + K+GK+ + + + R
Sbjct: 61 LQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EV 263
V +V++GTPG I + K + +KI++ DEAD MLD +
Sbjct: 120 V--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
LLFSAT +K + + + Y + + E ++ +++Q VY EL + I +
Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ--VYY--ELPETEKIEGLVSI 233
Query: 324 LGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
L ++ Q I+F RTK + + L GY + G Q ER + +K FK G T++L
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
++TDV ARG D V+ ++N+D P P E Y+HRIGR GR GR+G L+
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQN------P--ESYIHRIGRTGRAGREGKAITLI 343
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 116/358 (32%), Positives = 181/358 (50%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ L L LLK + ++ F+ P+ IQ ++P+IL NL+ QA G+GKT ++L +
Sbjct: 4 FKKLGLITPLLKAVN-DLGFEMPTPIQKEAIPLILEG--HNLVGQAPTGTGKTAAYLLPV 60
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+ KA Q L + PTRELA+Q + + K+GK+ + + + R
Sbjct: 61 LQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EV 263
V +V++GTPG I + K + +KI++ DEAD MLD +
Sbjct: 120 V--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
LLFSAT +K + + + Y + + E ++ +++Q VY EL + I +
Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ--VYY--ELPETEKIEGLVSI 233
Query: 324 LGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
L ++ Q I+F RTK + + L GY + G Q ER + +K FK G T++L
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
++TDV ARG D V+ ++N+D P P E Y+HRIGR GR GR+G L+
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQN------P--ESYIHRIGRTGRAGREGKAITLI 343
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 115/417 (27%), Positives = 203/417 (48%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
+E +KV ++ ++K G ++ F D L PELL+ + V+ F+ PS++Q
Sbjct: 19 EEDEKVPDSGNKVNGEAVKKGYVG----IHSSGFRDFLLKPELLRAI-VDSGFEHPSEVQ 73
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
+P + ++I QA++G GKT FVL L +++P+ AL +C TRELA Q
Sbjct: 74 HECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQIC 131
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKR--PPVTAQVVIGTPGTIKKWMSAKKLGFS 246
+ + T + +V N + I K +V+GTPG + K L
Sbjct: 132 NEFVRFSTYLPDT-KVSVFYGGVN-IKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLK 189
Query: 247 RLKILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQ 287
++ + DE D ML+ +V++FSAT ++ ++ + ++D +
Sbjct: 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPME 249
Query: 288 LFVKKEELSLESVKQYKVYCP-DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346
++V +E L + Y E+ K + D + L Q +IFV++ + A+ L+K
Sbjct: 250 IYVD-DEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALD--FNQVVIFVKSVSRAAELNK 306
Query: 347 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406
L + + I QEER K FK+G ++L++TD++ RG D ++VN+++NYD P
Sbjct: 307 LLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP 366
Query: 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
+ YLHR+GRAGRFG KG+ + D ++ +++ F++ + E+
Sbjct: 367 --------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKEL 415
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 116/361 (32%), Positives = 184/361 (50%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF++L LS E++K + M F++ + IQA ++P+ L +++I QA+ G+GKT F +
Sbjct: 2 TTFQELGLSQEVMKAIE-RMGFEETTPIQAKTIPLSLQN--KDVIGQAQTGTGKTAAFGI 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPIS 217
++ +V+ A QAL + PTRELAIQ E L K+G K + D +
Sbjct: 59 PIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYG-GQDIERQIRAL 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261
K+ P V++GTPG I ++ L + +V DEAD ML+
Sbjct: 118 KKHP---HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174
Query: 262 --EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ LLFSAT + ++ R + + + VK +E+++ +++QY Y K I
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQY--YLEVHEKKKFDILT 232
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+G
Sbjct: 233 RLLDI-QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAI 291
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
++L++TDV ARG D V + N+D P D E Y+HRIGR GR G+ GV
Sbjct: 292 EILVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKTGVAMTF 343
Query: 440 L 440
+
Sbjct: 344 V 344
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 112/360 (31%), Positives = 185/360 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+D NLS +L+K + M F++ + IQA ++P+ L+ +++I QA+ G+GKT F +
Sbjct: 4 TFQDFNLSSDLMKAIN-RMGFEEATPIQAQTIPLGLSN--KDVIGQAQTGTGKTAAFGIP 60
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISK 218
++ +++P QA+ I PTRELAIQ E L K+G K + D + K
Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYG-GQDIGRQIRALK 119
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV---------- 263
+ P +++GTPG + ++ + + + + +V DEAD ML D++
Sbjct: 120 KNP---NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSE 176
Query: 264 ---LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
LLFSAT +K R + + + VK +E+++ +++Q+ Y + K R
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQF--YLEVQERKKFDTLTR 234
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R +++FK+G +
Sbjct: 235 LLDI-QSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIE 293
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+ G+ +
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVP--------QDPESYVHRIGRTGRAGKTGMAMTFI 345
>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
Length = 427
Score = 260 (96.6 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 62/205 (30%), Positives = 111/205 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY YC K +
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY--YCK---LKDNEKNRK 276
Query: 321 IFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+F+L + + Q +IFV++ AL + L + + I QEER ++FKD
Sbjct: 277 LFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQ 336
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
++L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+
Sbjct: 337 RRILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAIT 388
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEV 463
+ D D I+ ++ F++ V E+
Sbjct: 389 FVSDETDAKILNDVQDRFEVNVAEL 413
Score = 197 (74.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 64/210 (30%), Positives = 100/210 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ K G ++ F D L PELL+ + V
Sbjct: 2 AENDVENELLDYEEDEEPQGAPESAAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ T + AV + I K V + +V+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-TVKVAVFFGGMS---IKKDEDVLKKSCPHIVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I + K L +K V DE D ML+++
Sbjct: 175 ILALVRNKTLNLKNVKHFVLDECDKMLEQL 204
>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
Length = 427
Score = 254 (94.5 bits), Expect = 9.0e-37, Sum P(2) = 9.0e-37
Identities = 62/203 (30%), Positives = 109/203 (53%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVIFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D D I+ ++ F++ V E+
Sbjct: 391 SDETDAKILNDVQDRFEVNVAEL 413
Score = 204 (76.9 bits), Expect = 9.0e-37, Sum P(2) = 9.0e-37
Identities = 64/211 (30%), Positives = 101/211 (47%)
Query: 59 AELDVEGLTID--ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DVE +D E ++ +D + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVENELLDYEEDEEPQPTVDSGATTGKKEVK-GSYVSIHSSGFRDFLLKPELLRAI- 59
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 60 VDCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLV 117
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + +CA + I K V + +V+GTPG
Sbjct: 118 MCHTRELAFQISKEYERFSKYMS-SVKCAAFFGGMS---IKKDEDVLKKNCPHIVVGTPG 173
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I K L +K V DE D ML+++
Sbjct: 174 RILALSRNKTLTLKNVKHFVLDECDKMLEQL 204
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 261 (96.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 195 (73.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 65/212 (30%), Positives = 102/212 (48%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-SVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
G I K L +K + DE D ML+++
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQL 205
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 113/386 (29%), Positives = 188/386 (48%)
Query: 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158
+T F D L PELL+ + + F+ PS++Q +P + ++I QA++G GKT FV
Sbjct: 51 STGFRDFLLKPELLRAIG-DCGFEHPSEVQQTCIPQAMLGG--DIICQAKSGLGKTAVFV 107
Query: 159 LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GI-TSECAVPTDSTNYVPI 216
L L +V+P L +C TRELA Q + K+ I T T +
Sbjct: 108 LTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAEL 167
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV-------LLFSAT 269
K +++GTPG + + K L S ++I V DE D MLD++ +F AT
Sbjct: 168 LKNKETHPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRAT 227
Query: 270 --------FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
F+ T+ + + I K + Q E ++ + ++ + + +++
Sbjct: 228 PQQKQVMMFSATLSDEIKPICKKFMQ---NPTEHYVDEDTKLTLHGLQQYFVALEEKEKN 284
Query: 322 FELGE-----KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+L E + Q IIFV++ A+ L K L++ + + QEER + KEFK+
Sbjct: 285 RKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKE 344
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
++ ++TDV RG D +++NL +NYD P D + YLHR+GRAGRFG KG+
Sbjct: 345 FNKRICVATDVFGRGIDIERINLAINYDMPA--------DADSYLHRVGRAGRFGTKGLA 396
Query: 437 FNLLMDGDDMIIMEKIERYFDIKVTE 462
+ + + D ++ IE+ F++ + E
Sbjct: 397 VSFVTNDQDKEVLTAIEKRFEVPIPE 422
>UNIPROTKB|E2QY95 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
Length = 427
Score = 262 (97.3 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 62/203 (30%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 391 SDENDAKILNDVQDRFEVNVAEL 413
Score = 193 (73.0 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 60/209 (28%), Positives = 99/209 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 175
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEV 263
+ + L +K V DE D ML+++
Sbjct: 176 LALVRNRSLNLKNVKHFVLDECDKMLEQL 204
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 261 (96.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 62/203 (30%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 391 SDENDAKILNDVQDRFEVNVAEL 413
Score = 194 (73.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 61/210 (29%), Positives = 102/210 (48%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYDEDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEDVLKKNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I + ++ L +K V DE D ML+++
Sbjct: 175 ILALVRSRSLNLRNVKHFVLDECDKMLEQL 204
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 261 (96.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 194 (73.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 59/210 (28%), Positives = 96/210 (45%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEM 119
++D E L +E + N + ++ K G ++ F D L PELL+ + V+
Sbjct: 5 DVDNELLDYEEDEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-VDC 63
Query: 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179
F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +C
Sbjct: 64 GFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 121
Query: 180 TRELAIQNLEVLRKMGKHTGITSEC------AVPTDSTNYVPISKRPPVTAQVVIGTPGT 233
TRELA Q + + K+ AV D + K P +V+GTPG
Sbjct: 122 TRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEE---VLKKNCP---HIVVGTPGR 175
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I K L +K + DE D ML+++
Sbjct: 176 ILALARNKSLNLKHIKHFILDECDKMLEQL 205
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 261 (96.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 194 (73.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 65/212 (30%), Positives = 101/212 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
G I K L +K + DE D ML+++
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQL 205
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 261 (96.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 194 (73.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 65/212 (30%), Positives = 101/212 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
G I K L +K + DE D ML+++
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQL 205
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 261 (96.9 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 62/203 (30%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 391 SDENDAKILNDVQDRFEVNVAEL 413
Score = 193 (73.0 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 61/210 (29%), Positives = 102/210 (48%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEDVLKKNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I + ++ L +K V DE D ML+++
Sbjct: 175 ILALVRSRSLNLRNVKHFVLDECDKMLEQL 204
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 263 (97.6 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 61/205 (29%), Positives = 115/205 (56%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D +++V E +L+L ++Q+ V + K +
Sbjct: 220 QVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKEN-EK----NKK 274
Query: 321 IFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+FEL + + Q +IFV++ AL + L + + I QEER ++FKD
Sbjct: 275 LFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQ 334
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
++L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+
Sbjct: 335 KRILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAIT 386
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEV 463
+ D +D I+ +++ FD+ ++E+
Sbjct: 387 FVSDENDAKILNEVQDRFDVNISEL 411
Score = 190 (71.9 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 55/167 (32%), Positives = 85/167 (50%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F D L PE+L+ + V+ F+ PS++Q +P + +++ QA++G GKT FVL
Sbjct: 43 FRDFLLKPEILRAI-VDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLAT 99
Query: 162 LSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L +++P+ L +C TRELA Q + + K+ T + AV + I K
Sbjct: 100 LQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMP-TVKVAVFFGG---MAIQKDE 155
Query: 221 PV----TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
T +V+GTPG I + KKL LK V DE D ML+++
Sbjct: 156 ETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQL 202
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 261 (96.9 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 192 (72.6 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 61/211 (28%), Positives = 99/211 (46%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I K L +K + DE D ML+++
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQL 205
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 261 (96.9 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 191 (72.3 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 61/211 (28%), Positives = 99/211 (46%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I K L +K + DE D ML+++
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQL 205
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 261 (96.9 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 281
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 282 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 339
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 340 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 392 SDENDAKILNDVQDRFEVNISEL 414
Score = 191 (72.3 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 61/211 (28%), Positives = 99/211 (46%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I K L +K + DE D ML+++
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQL 205
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 116/371 (31%), Positives = 184/371 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F +L +S E E + + IQ ++P+IL+ +++I QA+ G+GKT FVL +
Sbjct: 7 FLELGIS-ETFNHTLRENGITEATPIQEKAIPVILSG--KDIIGQAKTGTGKTLAFVLPI 63
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L ++DP QAL + PTRELA+Q ++KM + A+ + K
Sbjct: 64 LEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKG 123
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML------------DEV------ 263
T +V+ TPG + + + + S L +V DEAD ML DE
Sbjct: 124 NT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
+LFSAT + +K R + + + V+ EE+++++++Q + D AK +R + +
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDR-AKPDALRF-VMD 240
Query: 324 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383
+ +IF RTK AS L+ LK GY + G Q +R++++K F++ Q LI
Sbjct: 241 RDQPF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 384 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443
+TDV ARG D V + NYD P D E Y+HRIGR GR G G+ +
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIP--------EDVESYIHRIGRTGRAGGSGLAITFVAAK 351
Query: 444 DDMIIMEKIER 454
D+ + E+IE+
Sbjct: 352 DEKHL-EEIEK 361
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 116/371 (31%), Positives = 184/371 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F +L +S E E + + IQ ++P+IL+ +++I QA+ G+GKT FVL +
Sbjct: 7 FLELGIS-ETFNHTLRENGITEATPIQEKAIPVILSG--KDIIGQAKTGTGKTLAFVLPI 63
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L ++DP QAL + PTRELA+Q ++KM + A+ + K
Sbjct: 64 LEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKG 123
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML------------DEV------ 263
T +V+ TPG + + + + S L +V DEAD ML DE
Sbjct: 124 NT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182
Query: 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323
+LFSAT + +K R + + + V+ EE+++++++Q + D AK +R + +
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDR-AKPDALRF-VMD 240
Query: 324 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383
+ +IF RTK AS L+ LK GY + G Q +R++++K F++ Q LI
Sbjct: 241 RDQPF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 384 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443
+TDV ARG D V + NYD P D E Y+HRIGR GR G G+ +
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIP--------EDVESYIHRIGRTGRAGGSGLAITFVAAK 351
Query: 444 DDMIIMEKIER 454
D+ + E+IE+
Sbjct: 352 DEKHL-EEIEK 361
>UNIPROTKB|Q5E970 [details] [associations]
symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
Length = 427
Score = 261 (96.9 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 62/203 (30%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 391 SDENDAKILNDVQDRFEVNVAEL 413
Score = 190 (71.9 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 62/210 (29%), Positives = 100/210 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYEEDEEPQAPPESAPPPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEEVLKRNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
I + + L +K V DE D ML+++
Sbjct: 175 ILALVRNRSLNLRNVKHFVLDECDKMLEQL 204
>UNIPROTKB|O00148 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006406 "mRNA export from
nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
Length = 427
Score = 263 (97.6 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 63/203 (31%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 222 QCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 280
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q IIFV++ AL + L + + I QEER ++FKD +
Sbjct: 281 LDVL--EFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 338
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 339 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 390
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 391 SDENDAKILNDVQDRFEVNVAEL 413
Score = 187 (70.9 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 58/209 (27%), Positives = 99/209 (47%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + ++ + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 175
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEV 263
+ + +K V DE D ML+++
Sbjct: 176 LALVRNRSFSLKNVKHFVLDECDKMLEQL 204
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 394 (143.8 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 119/391 (30%), Positives = 193/391 (49%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A F DL L+ +L L EM F P+ IQA ++P++L R+ + +A+ G+GKT F
Sbjct: 24 TAIQFSDLALNSAILSAL-TEMGFVSPTPIQAAAIPVLLEG--RDALGKAQTGTGKTAAF 80
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +L++++ + PQA+ + PTRELAIQ ++ +G++ + + +
Sbjct: 81 SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEI-YGGASILDQM 139
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV--------- 263
+ A +V+GTPG +K ++ +L + DEAD ML D+V
Sbjct: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
Query: 264 ----LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKVMVIR 318
+LFSAT VK V R +++ + V ++ V+Q Y V E + M
Sbjct: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMA-- 257
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
R+ E E+ +I+FVRT+ L L G++ + G Q R++ V K G+
Sbjct: 258 -RLLET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+L++TDV+ARG D ++ + NYD P D E Y+HRIGR GR GRKG
Sbjct: 316 IDILVATDVVARGLDVPRITHVYNYDIPF--------DVESYIHRIGRTGRAGRKGKAI- 366
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
LL+ + + ++ IER + E++ D
Sbjct: 367 LLVRTNQIRMLRTIERVTRSSMEEIQLPHRD 397
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 394 (143.8 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 119/391 (30%), Positives = 193/391 (49%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A F DL L+ +L L EM F P+ IQA ++P++L R+ + +A+ G+GKT F
Sbjct: 24 TAIQFSDLALNSAILSAL-TEMGFVSPTPIQAAAIPVLLEG--RDALGKAQTGTGKTAAF 80
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +L++++ + PQA+ + PTRELAIQ ++ +G++ + + +
Sbjct: 81 SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEI-YGGASILDQM 139
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV--------- 263
+ A +V+GTPG +K ++ +L + DEAD ML D+V
Sbjct: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
Query: 264 ----LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKVMVIR 318
+LFSAT VK V R +++ + V ++ V+Q Y V E + M
Sbjct: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMA-- 257
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
R+ E E+ +I+FVRT+ L L G++ + G Q R++ V K G+
Sbjct: 258 -RLLET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+L++TDV+ARG D ++ + NYD P D E Y+HRIGR GR GRKG
Sbjct: 316 IDILVATDVVARGLDVPRITHVYNYDIPF--------DVESYIHRIGRTGRAGRKGKAI- 366
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
LL+ + + ++ IER + E++ D
Sbjct: 367 LLVRTNQIRMLRTIERVTRSSMEEIQLPHRD 397
>UNIPROTKB|F1SCH3 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
Length = 475
Score = 262 (97.3 bits), Expect = 6.6e-36, Sum P(2) = 6.6e-36
Identities = 62/203 (30%), Positives = 110/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+ ++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 270 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDL 328
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 329 LDVL--EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRR 386
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 387 ILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 438
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ V E+
Sbjct: 439 SDENDAKILNDVQDRFEVNVAEL 461
Score = 190 (71.9 bits), Expect = 6.6e-36, Sum P(2) = 6.6e-36
Identities = 60/209 (28%), Positives = 98/209 (46%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E + K G ++ F D L PELL+ + V
Sbjct: 50 AEQDVENELLDYEEDEEPQAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 108
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 109 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 166
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 167 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 223
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEV 263
+ + L +K V DE D ML+++
Sbjct: 224 LALVRNRSLNLKNVKHFVLDECDKMLEQL 252
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 119/384 (30%), Positives = 192/384 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LLK + E + +P++IQ S+P+IL +++A+A+ G+GKT F L
Sbjct: 6 TFSSFSLDSTLLKAI-TESAYDEPTEIQKQSIPLILAK--HDVMARAQTGTGKTAAFALP 62
Query: 161 MLSR---VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+L + V P +AL + PTRELA Q + G+ T +T A ST IS
Sbjct: 63 ILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKK-QIS 121
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261
+ V ++I TPG + + + + S ++ LV+DEAD MLD
Sbjct: 122 ELK-VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 262 --EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ LLFSATF + + I+ + + + ++ + + V+Q VY D K +
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQL-VYGVDADRKRELTS- 238
Query: 320 RIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
F +G + Q ++F RTK A L K + G + I G Q R+K + EFK+G
Sbjct: 239 --FLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGK 296
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+ LI+TDV ARG D + ++ ++NY+ P + E Y+HRIGR R G G+ +
Sbjct: 297 VRALIATDVAARGIDIKGLSHVINYELPY--------NAEDYVHRIGRTARAGNSGLAVS 348
Query: 439 LLMDGDDMIIMEKIERYFDIKVTE 462
L+ G++ ++ IE DI++ +
Sbjct: 349 LVSPGEEWLLTA-IEELLDIQLLQ 371
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 119/384 (30%), Positives = 192/384 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LLK + E + +P++IQ S+P+IL +++A+A+ G+GKT F L
Sbjct: 6 TFSSFSLDSTLLKAI-TESAYDEPTEIQKQSIPLILAK--HDVMARAQTGTGKTAAFALP 62
Query: 161 MLSR---VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+L + V P +AL + PTRELA Q + G+ T +T A ST IS
Sbjct: 63 ILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKK-QIS 121
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261
+ V ++I TPG + + + + S ++ LV+DEAD MLD
Sbjct: 122 ELK-VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 262 --EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ LLFSATF + + I+ + + + ++ + + V+Q VY D K +
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQL-VYGVDADRKRELTS- 238
Query: 320 RIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
F +G + Q ++F RTK A L K + G + I G Q R+K + EFK+G
Sbjct: 239 --FLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGK 296
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+ LI+TDV ARG D + ++ ++NY+ P + E Y+HRIGR R G G+ +
Sbjct: 297 VRALIATDVAARGIDIKGLSHVINYELPY--------NAEDYVHRIGRTARAGNSGLAVS 348
Query: 439 LLMDGDDMIIMEKIERYFDIKVTE 462
L+ G++ ++ IE DI++ +
Sbjct: 349 LVSPGEEWLLTA-IEELLDIQLLQ 371
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 119/380 (31%), Positives = 183/380 (48%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L ELL+ L M + + + IQA SLP IL ++I Q + GSGKT F LG+
Sbjct: 3 FSTLKLKTELLENLS-SMGYNEMTPIQAQSLPAILAG--EDVIGQGKTGSGKTAAFGLGL 59
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L+++D Q L +CPTRELA Q + +R + + GI + V T VP+ +
Sbjct: 60 LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLAR--GIHN-VKVLT-LCGGVPMGPQIG 115
Query: 222 VT---AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML--------DEVLLFSAT- 269
A +++GTPG I + +L S L +LV DEAD ML D ++ S
Sbjct: 116 SLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRE 175
Query: 270 -----FNETVKNFVTRIVKD--YNQLFVKKEEL-SLESVKQYKVYCPDELAKVMVIRDRI 321
F+ T + I K YN + VK +++Q+ D+ +++ ++ +
Sbjct: 176 RQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLL 235
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
E K ++F TK + L+ G+ V + G Q +RD+ + +F + V
Sbjct: 236 LE--HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
L++TDV ARG D ++ + NY H+ D EV++HRIGR GR G KG +
Sbjct: 294 LVATDVAARGLDIDALDAVFNY--------HVAYDTEVHIHRIGRTGRAGSKGAAYTFYN 345
Query: 442 DGDDMIIMEKIERYFDIKVT 461
D D I +E Y D ++T
Sbjct: 346 DQDGYKIA-LLEEYLDREIT 364
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 119/380 (31%), Positives = 183/380 (48%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L ELL+ L M + + + IQA SLP IL ++I Q + GSGKT F LG+
Sbjct: 3 FSTLKLKTELLENLS-SMGYNEMTPIQAQSLPAILAG--EDVIGQGKTGSGKTAAFGLGL 59
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L+++D Q L +CPTRELA Q + +R + + GI + V T VP+ +
Sbjct: 60 LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLAR--GIHN-VKVLT-LCGGVPMGPQIG 115
Query: 222 VT---AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML--------DEVLLFSAT- 269
A +++GTPG I + +L S L +LV DEAD ML D ++ S
Sbjct: 116 SLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRE 175
Query: 270 -----FNETVKNFVTRIVKD--YNQLFVKKEEL-SLESVKQYKVYCPDELAKVMVIRDRI 321
F+ T + I K YN + VK +++Q+ D+ +++ ++ +
Sbjct: 176 RQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLL 235
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
E K ++F TK + L+ G+ V + G Q +RD+ + +F + V
Sbjct: 236 LE--HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
L++TDV ARG D ++ + NY H+ D EV++HRIGR GR G KG +
Sbjct: 294 LVATDVAARGLDIDALDAVFNY--------HVAYDTEVHIHRIGRTGRAGSKGAAYTFYN 345
Query: 442 DGDDMIIMEKIERYFDIKVT 461
D D I +E Y D ++T
Sbjct: 346 DQDGYKIA-LLEEYLDREIT 364
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 366 (133.9 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 120/404 (29%), Positives = 201/404 (49%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
S+ + E + E + + E K+V + D AE +I +P + T+F+ L LS +L
Sbjct: 85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVL 142
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLK 170
KG+ E+KF KP+ IQ+ S+P+ L ++++A A+ GSGKT +++ ++ R+ P+
Sbjct: 143 KGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS 199
Query: 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGT 230
+ + + PTRELA+Q E +K+ H + N ++ +VI T
Sbjct: 200 T-KVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIAT 257
Query: 231 PGT-IKKWMSAKKLGFSRLKILVYDEADHMLDE--------VL-LFSATFNETV---KNF 277
PG I ++ +++LV DEAD ML+E +L L +T+
Sbjct: 258 PGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATM 317
Query: 278 VTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRI-----FELGEKMG-Q 330
TRI +D QL ++K + ++ K + ++ RD++ ++L + + +
Sbjct: 318 NTRI-QDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRK-RDQLKPALLYQLLKGVSSR 375
Query: 331 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390
++FV K +A L L G +V+ + GA QE+R + VK FK VLI TD+ AR
Sbjct: 376 VVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAAR 435
Query: 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434
G D ++ L++NYD P E+YLHR+GR R GR G
Sbjct: 436 GLDIPKIELVINYDMPKTF--------EIYLHRVGRTARAGRDG 471
Score = 43 (20.2 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 49 TANTSEDKSTAELDVEGLTIDES-KKVNKFLDEAEDSSI 86
T NT E+ E V+ + +DE KK +E++D +
Sbjct: 37 TTNTLEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 366 (133.9 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 120/404 (29%), Positives = 201/404 (49%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
S+ + E + E + + E K+V + D AE +I +P + T+F+ L LS +L
Sbjct: 85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVL 142
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLK 170
KG+ E+KF KP+ IQ+ S+P+ L ++++A A+ GSGKT +++ ++ R+ P+
Sbjct: 143 KGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS 199
Query: 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGT 230
+ + + PTRELA+Q E +K+ H + N ++ +VI T
Sbjct: 200 T-KVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIAT 257
Query: 231 PGT-IKKWMSAKKLGFSRLKILVYDEADHMLDE--------VL-LFSATFNETV---KNF 277
PG I ++ +++LV DEAD ML+E +L L +T+
Sbjct: 258 PGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATM 317
Query: 278 VTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRI-----FELGEKMG-Q 330
TRI +D QL ++K + ++ K + ++ RD++ ++L + + +
Sbjct: 318 NTRI-QDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRK-RDQLKPALLYQLLKGVSSR 375
Query: 331 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390
++FV K +A L L G +V+ + GA QE+R + VK FK VLI TD+ AR
Sbjct: 376 VVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAAR 435
Query: 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434
G D ++ L++NYD P E+YLHR+GR R GR G
Sbjct: 436 GLDIPKIELVINYDMPKTF--------EIYLHRVGRTARAGRDG 471
Score = 43 (20.2 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 49 TANTSEDKSTAELDVEGLTIDES-KKVNKFLDEAEDSSI 86
T NT E+ E V+ + +DE KK +E++D +
Sbjct: 37 TTNTLEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 115/380 (30%), Positives = 187/380 (49%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+D LS +L K + M F++ + IQA ++P+ L +++I QA+ G+GKT F +
Sbjct: 4 TFQDFQLSSDLTKAIK-RMGFEEATPIQAQTIPLGLAN--KDVIGQAQTGTGKTAAFGIP 60
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISK 218
++ +++P QA+ I PTRELAIQ E L K+G K + D + K
Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYG-GQDIGRQIRALK 119
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
+ P +++GTPG + ++ + + + +V DEAD ML+
Sbjct: 120 KNP---HIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAE 176
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSAT +K R + + + VK +E+++ +++Q+ Y K R
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQF--YLEVHERKKFDTLTR 234
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ ++ + I+F RTK L +AL GY I G Q +R +++FK G +
Sbjct: 235 LLDI-QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIE 293
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+ G+ +
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVP--------QDPESYVHRIGRTGRAGKTGMAMTFI 345
Query: 441 MDGD-DMI--IMEKIERYFD 457
+ DM+ I + +R D
Sbjct: 346 TPREKDMLRAIEQTTKRKMD 365
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 256 (95.2 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 61/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 230 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 288
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I A Q+ER ++FKD +
Sbjct: 289 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRR 346
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 347 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 398
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D + ++ F++ ++E+
Sbjct: 399 SDENDARTLNDVQDRFEVNISEL 421
Score = 187 (70.9 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 63/218 (28%), Positives = 99/218 (45%)
Query: 52 TSEDKSTAELDVEGLTIDESKKVNKFLDEAEDS-SI-KTVTTGDTPYTSATTFEDLNLSP 109
T D LD E +D + L ++ SI K G ++ F D L P
Sbjct: 2 TENDVDNELLDYEEDEVDAGGAGDAGLGHSDGIISIRKEGVKGSYVSIHSSGFRDFLLKP 61
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELL+ + V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P
Sbjct: 62 ELLRAI-VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVT 118
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP----ISKRPPVTAQ 225
L +C TRELA Q + + K+ + + AV + + K P
Sbjct: 119 GQVSVLVMCHTRELAFQISKEYERFSKYMP-SVKVAVFFGGLSIKKDEEVLKKESP---H 174
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
VV+GTPG I K L +K + DE D ML+++
Sbjct: 175 VVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQL 212
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 266 (98.7 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 64/203 (31%), Positives = 109/203 (53%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT + ++ R ++D +++V E +L+L ++Q+ V E K + +
Sbjct: 219 QVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLK-EAEKNRRLLNL 277
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV+ ALH+ L + + I QEER + FKD +
Sbjct: 278 LDAL--EFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKR 335
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++TD+ RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 336 ILVATDLFGRGMDIERVNIVFNYDMP--------EDSDSYLHRVARAGRFGTKGLAITFV 387
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D + ++ FDI +TE+
Sbjct: 388 SDENDAKTLNSVQDRFDISITEL 410
Score = 172 (65.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 49/175 (28%), Positives = 85/175 (48%)
Query: 90 TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARN 149
T G ++ F D L PE+L+ + + F+ PS++Q +P + +++ QA++
Sbjct: 31 TKGTYASIHSSGFRDFLLKPEILRAIG-DCGFEHPSEVQHECIPQAILG--MDVVCQAKS 87
Query: 150 GSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPT 208
G GKT FV+ L +++P +C+C TRELA Q + + K+ G+ + AV
Sbjct: 88 GMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGV--KVAVFF 145
Query: 209 DSTNYVPISKRPPVTA-QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262
+R +V+GTPG + + KL ++K V DE D M+ +
Sbjct: 146 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGD 200
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 112/432 (25%), Positives = 208/432 (48%)
Query: 56 KSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATT-FEDLNLSPELLKG 114
++ E+D+ L E + + ++ D+ KT DT ++ F + L PEL +
Sbjct: 3 ETNPEVDISELAEYEEESDEEVQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELER- 61
Query: 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174
+ + F+ PS++Q +P + ++I QA++G GKT FVL L ++D N
Sbjct: 62 VIGDCGFEHPSEVQNECIPQAILGT--DVICQAKSGMGKTAVFVLSTLQQIDNNPNGITT 119
Query: 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAV----PTDSTNYVPISKRPPVTAQVVIGT 230
L +C TRELA Q + + K+ + P + + K+P ++IGT
Sbjct: 120 LVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKP----NIIIGT 175
Query: 231 PGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV----------LLFSAT-----FNETVK 275
PG I + S L +K + DE D ML+ + L A F+ T+
Sbjct: 176 PGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLS 235
Query: 276 NFVTRIVKDY--NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM--GQT 331
+ + I K + N L + + S ++ + Y + ++ EL + + Q
Sbjct: 236 DTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQK--NKKLIELLDSLDFNQA 293
Query: 332 IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391
+IFV++ A AL+K L+D G+ I Q++R + ++FK+ ++++++T++ RG
Sbjct: 294 VIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRG 353
Query: 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEK 451
D ++VN+++NYD + + YLHR+GRAGRFG KG+ + + +D ++ E+
Sbjct: 354 IDIERVNVVINYD--------MAESADTYLHRVGRAGRFGTKGLAISFVPSKEDPVL-EQ 404
Query: 452 IERYFDIKVTEV 463
++ F + + E+
Sbjct: 405 VQSKFVVSIKEL 416
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 127/407 (31%), Positives = 201/407 (49%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
D ED +K T+ +S TFE +NL +LL+G+Y F+ PS IQ+ ++ I++
Sbjct: 4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG 60
Query: 139 PYRNLIAQARNGSGKT-TCFVLGMLSRVDPNLKA----PQALCICPTRELAIQNL----- 188
AQ+ G T T +L + +L+A P ++ ++NL
Sbjct: 61 KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQV-VKNLGDYMN 119
Query: 189 -------------EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 235
+ L+KM KH G + P + I K+ T V +
Sbjct: 120 VNAFAITGGKTLKDDLKKMQKH-GCQAVSGTPGRVLDM--IKKQMLQTRNVQMLVLDEAD 176
Query: 236 KWMSAKKLGFSRLKILVYDEADHMLD--EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293
+ +S + LGF K +YD + +V++ SAT N+ + + + D ++ VK++
Sbjct: 177 ELLS-ETLGF---KQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD 232
Query: 294 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353
E+SLE +KQY V E K + D I++ + Q +IF TK L + L +
Sbjct: 233 EISLEGIKQYVVNVDKEEWKFDTLCD-IYD-SLTITQCVIFCNTKKKVDWLSQRLIQSNF 290
Query: 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL 413
V ++ G QEERDK++ +F+ G ++VLISTDV ARG D QQV+L++NYD P
Sbjct: 291 AVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLP------- 343
Query: 414 EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 460
E Y+HRIGR+GRFGRKGV N + D + + +IE+++ IK+
Sbjct: 344 -EIIENYIHRIGRSGRFGRKGVAINFITKAD-LAKLREIEKFYSIKI 388
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 101/300 (33%), Positives = 159/300 (53%)
Query: 183 LAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK 241
L IQ +V+ +G + G T C T+ N + K +V+GTPG + ++ +
Sbjct: 20 LKIQ--KVILALGDYMGATCHACIGGTNVRN--EMQKLQAEAPHIVVGTPGRVFDMLNRR 75
Query: 242 KLGFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVK 283
L +K+ V DEAD ML +V+L SAT V + ++
Sbjct: 76 YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMR 135
Query: 284 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 343
D ++ VKKEEL+LE +KQ+ + E K+ + D ++E + Q +IF+ T+
Sbjct: 136 DPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-LYET-LTITQAVIFLNTRRKVDW 193
Query: 344 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 403
L + + + V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D QQV+L++NY
Sbjct: 194 LTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 253
Query: 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
D P E Y+HRIGR GRFGRKGV N + + D I+ + IE +++ V E+
Sbjct: 254 DLPTNR--------ENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD-IETFYNTTVEEM 304
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 98/294 (33%), Positives = 156/294 (53%)
Query: 189 EVLRKMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247
+V+ +G + G T C T+ N + K +V+GTPG + ++ + L
Sbjct: 24 KVILALGDYMGATCHACIGGTNVRN--EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 81
Query: 248 LKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLF 289
+K+ V DEAD ML +V+L SAT V + ++D ++
Sbjct: 82 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRIL 141
Query: 290 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 349
VKKEEL+LE +KQ+ + E K+ + D ++E + Q +IF+ T+ L + +
Sbjct: 142 VKKEELTLEGIKQFYINVEREEWKLDTLCD-LYET-LTITQAVIFLNTRRKVDWLTEKMH 199
Query: 350 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 409
+ V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D QQV+L++NYD P
Sbjct: 200 ARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR 259
Query: 410 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463
E Y+HRIGR GRFGRKGV N + + D I+ + IE +++ V E+
Sbjct: 260 --------ENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD-IETFYNTTVEEM 304
>GENEDB_PFALCIPARUM|PF14_0563 [details] [associations]
symbol:PF14_0563 "DEAD-box RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 KO:K01509 RefSeq:XP_001348737.1
ProteinModelPortal:Q8IKP1 PRIDE:Q8IKP1
EnsemblProtists:PF14_0563:mRNA GeneID:812145 KEGG:pfa:PF14_0563
EuPathDB:PlasmoDB:PF3D7_1459000 HOGENOM:HOG000281979 OMA:DKKQPDD
ProtClustDB:CLSZ2501093 Uniprot:Q8IKP1
Length = 741
Score = 374 (136.7 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 97/288 (33%), Positives = 159/288 (55%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y S T+E+L + EL++ + +KF PSKIQA +LP+IL+ +NLIAQ++NGSGKT
Sbjct: 321 YHSKNTWEELKIDNELIQ-ILTYLKFLGPSKIQAYALPIILSSN-KNLIAQSQNGSGKTL 378
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
FV+ ML +++ L + QA+CICPTREL+ QN +V+ K+ + AVP Y
Sbjct: 379 TFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAVPL-CERY-- 435
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
+K Q+ +GTPG ++ K + +K+ V DEAD ++D
Sbjct: 436 -NKSGGY--QIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKR 492
Query: 262 ------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 315
++LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY + ++ K
Sbjct: 493 FLPRSCQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYY 552
Query: 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363
+ + + + Q +IFV +K SA L+ + + + VT I +I
Sbjct: 553 YLSELYCSM--TISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSI 598
Score = 253 (94.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 69/234 (29%), Positives = 120/234 (51%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY---------KVYCPDELA 312
++LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY K Y EL
Sbjct: 499 QILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYYYLSELY 558
Query: 313 KVMVIRDR-IFELGEKMGQTIIFVRTKNS-------ASALHKALKDFGYEVTTIMGATIQ 364
M I IF +K + T+NS A ++ + ++G
Sbjct: 559 CSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQIQKANVLGMD-P 617
Query: 365 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP-VKHGK---------HLE 414
+ RD ++ +FK G+++VLI TD+L+RG D ++L++N+D P + G+ +
Sbjct: 618 KTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLPYIYQGRIGDTLNNTSNQR 677
Query: 415 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468
+ E Y+HRIGR GRFG KG+ N + + M +++IE Y+ + ++ E
Sbjct: 678 VNMETYIHRIGRTGRFGTKGMAINFISK-NQMSHIKQIEEYYKCSIADLEFDSE 730
>UNIPROTKB|Q8IKP1 [details] [associations]
symbol:PF14_0563 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 KO:K01509 RefSeq:XP_001348737.1
ProteinModelPortal:Q8IKP1 PRIDE:Q8IKP1
EnsemblProtists:PF14_0563:mRNA GeneID:812145 KEGG:pfa:PF14_0563
EuPathDB:PlasmoDB:PF3D7_1459000 HOGENOM:HOG000281979 OMA:DKKQPDD
ProtClustDB:CLSZ2501093 Uniprot:Q8IKP1
Length = 741
Score = 374 (136.7 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 97/288 (33%), Positives = 159/288 (55%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y S T+E+L + EL++ + +KF PSKIQA +LP+IL+ +NLIAQ++NGSGKT
Sbjct: 321 YHSKNTWEELKIDNELIQ-ILTYLKFLGPSKIQAYALPIILSSN-KNLIAQSQNGSGKTL 378
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
FV+ ML +++ L + QA+CICPTREL+ QN +V+ K+ + AVP Y
Sbjct: 379 TFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAVPL-CERY-- 435
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
+K Q+ +GTPG ++ K + +K+ V DEAD ++D
Sbjct: 436 -NKSGGY--QIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKR 492
Query: 262 ------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 315
++LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY + ++ K
Sbjct: 493 FLPRSCQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYY 552
Query: 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363
+ + + + Q +IFV +K SA L+ + + + VT I +I
Sbjct: 553 YLSELYCSM--TISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSI 598
Score = 253 (94.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 69/234 (29%), Positives = 120/234 (51%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY---------KVYCPDELA 312
++LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY K Y EL
Sbjct: 499 QILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYYYLSELY 558
Query: 313 KVMVIRDR-IFELGEKMGQTIIFVRTKNS-------ASALHKALKDFGYEVTTIMGATIQ 364
M I IF +K + T+NS A ++ + ++G
Sbjct: 559 CSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQIQKANVLGMD-P 617
Query: 365 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP-VKHGK---------HLE 414
+ RD ++ +FK G+++VLI TD+L+RG D ++L++N+D P + G+ +
Sbjct: 618 KTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLPYIYQGRIGDTLNNTSNQR 677
Query: 415 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468
+ E Y+HRIGR GRFG KG+ N + + M +++IE Y+ + ++ E
Sbjct: 678 VNMETYIHRIGRTGRFGTKGMAINFISK-NQMSHIKQIEEYYKCSIADLEFDSE 730
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 112/400 (28%), Positives = 191/400 (47%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S +F + LS E+ + L + ++ P+++Q +P+ L ++L+ +++ GSGKT F
Sbjct: 2 SKKSFSNYALSKEVRRAL-TGLGYEHPTEVQGEVIPVALQK--KDLVVKSQTGSGKTASF 58
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+ + V+ PQAL + PTRELA+Q E + +G+ I + A + +
Sbjct: 59 GIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRI--KAAAIYGKSPFARQK 116
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV--------- 263
+V+GTPG + + L RLK LV DEAD ML D+V
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPT 176
Query: 264 ----LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+LFSAT E V+ + + +K ++ + + ++ ++ E K+ +++D
Sbjct: 177 KRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKI-EHTLFEVREEEKLSLLKD 235
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
+ + E IIF RT+ + +++ L Y I G +QE+R ++ +F+ G
Sbjct: 236 -VTTI-ENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
+ L++TDV ARG D + ++NYD P++ E Y+HR GR GR G G
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEK--------ESYVHRTGRTGRAGNSGKAITF 345
Query: 440 LMDGDDMIIMEKIERY--FDIKVTEVRNSDEDFKAALKAA 477
+ +D + E+IE Y F I + +E K KAA
Sbjct: 346 ITPYEDRFL-EEIEAYIGFAIPKANAPSKEEVMKG--KAA 382
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 112/400 (28%), Positives = 191/400 (47%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S +F + LS E+ + L + ++ P+++Q +P+ L ++L+ +++ GSGKT F
Sbjct: 2 SKKSFSNYALSKEVRRAL-TGLGYEHPTEVQGEVIPVALQK--KDLVVKSQTGSGKTASF 58
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+ + V+ PQAL + PTRELA+Q E + +G+ I + A + +
Sbjct: 59 GIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRI--KAAAIYGKSPFARQK 116
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-----DEV--------- 263
+V+GTPG + + L RLK LV DEAD ML D+V
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPT 176
Query: 264 ----LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+LFSAT E V+ + + +K ++ + + ++ ++ E K+ +++D
Sbjct: 177 KRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKI-EHTLFEVREEEKLSLLKD 235
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
+ + E IIF RT+ + +++ L Y I G +QE+R ++ +F+ G
Sbjct: 236 -VTTI-ENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
+ L++TDV ARG D + ++NYD P++ E Y+HR GR GR G G
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEK--------ESYVHRTGRTGRAGNSGKAITF 345
Query: 440 LMDGDDMIIMEKIERY--FDIKVTEVRNSDEDFKAALKAA 477
+ +D + E+IE Y F I + +E K KAA
Sbjct: 346 ITPYEDRFL-EEIEAYIGFAIPKANAPSKEEVMKG--KAA 382
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 110/361 (30%), Positives = 176/361 (48%)
Query: 100 TTFEDLN-LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158
T F LN L P L L E+ + + +QA +LP IL +++ QA+ GSGKT F
Sbjct: 2 TAFSTLNVLPPAQLTNLN-ELGYLTMTPVQAAALPAILAG--KDVRVQAKTGSGKTAAFG 58
Query: 159 LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK---HTGITSECAVPTDSTNYVP 215
LG+L ++D +L QAL +CPTRELA Q LR++ + +T I + C
Sbjct: 59 LGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
+ P +++ TPG + + + L LV DEAD MLD
Sbjct: 119 LQHAP----HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317
+ LLFSAT+ E + R+ +D + + + +L ++Q + Y K+ ++
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQ-QFYETSSKGKIPLL 232
Query: 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377
+ R+ L + ++F TK A+ AL + G ++ G Q +RD+ + F +G
Sbjct: 233 Q-RLLSLHQP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANG 290
Query: 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437
+VL++TDV ARG D + + L+VN++ L D EV++HRIGR R G G+
Sbjct: 291 SARVLVATDVAARGLDIKSLELVVNFE--------LAWDPEVHVHRIGRTARAGNSGLAI 342
Query: 438 N 438
+
Sbjct: 343 S 343
>UNIPROTKB|J9PAF3 [details] [associations]
symbol:J9PAF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00530000063236 EMBL:AAEX03004077
Ensembl:ENSCAFT00000043955 OMA:IMKDIQR Uniprot:J9PAF3
Length = 267
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 75/208 (36%), Positives = 128/208 (61%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
++LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C + K + +
Sbjct: 57 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQALCNLY 116
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+ + Q +IF T+ +AS L L G++V + G + E+R +++ F++G +V
Sbjct: 117 GAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 174
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
L++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG++G+ N++
Sbjct: 175 LVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 232
Query: 442 DGDDMIIMEKIERYFDIKVTEVRNSDED 469
M I+ +I+ +F+ K+ + D D
Sbjct: 233 SKHSMNILNRIQEHFNKKIERLDTDDLD 260
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 115/364 (31%), Positives = 180/364 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L +L+ L + + + + IQA SLP+IL +++IA+A+ GSGKT F +G+
Sbjct: 6 FSSLRLKAPMLRNL-ASLGYAEMTPIQAHSLPLILAG--KDVIARAKTGSGKTAAFGIGL 62
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
LSR+D QAL +CPTRELA Q + LR++ + T + + P
Sbjct: 63 LSRLDALSFRVQALVLCPTRELADQVGKELRRLARFTDNIKILTI-CGGVPFGPQLGSLE 121
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------EVLLFSAT----- 269
A VVIGTPG + + L S L+ LV DEAD MLD L+ +A
Sbjct: 122 HGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQT 181
Query: 270 --FNETVKNFVTRIVKDYNQ--LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325
F+ T + + + + + V +E+ E + Y D ++ + +RI LG
Sbjct: 182 LLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQVFYEVDSGQRIEAV-ERI--LG 238
Query: 326 EKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 384
++ +IF TK + AL GY I G Q ERD+++ F + VL++
Sbjct: 239 HYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVA 298
Query: 385 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444
TDV ARG D ++++ ++NY+ L + EV+ HRIGR GR G +G+ +L+ +
Sbjct: 299 TDVAARGLDIKELSAVINYE--------LTRNPEVHTHRIGRTGRAGERGLAVSLVTPRE 350
Query: 445 DMII 448
+I
Sbjct: 351 SRLI 354
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 245 (91.3 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 60/206 (29%), Positives = 109/206 (52%)
Query: 259 MLDEVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVI 317
M +L+F + + + TRI +++V E +L+L + Q+ + E+ K +
Sbjct: 282 MFRAILMFHSKTHIFEEKRWTRISP--MEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKL 338
Query: 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377
D + L Q +IFV++ + A+ L+K L + + I QEER K FK+G
Sbjct: 339 NDLLDALD--FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 396
Query: 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437
++L++TD++ RG D ++VN+++NYD P + YLHR+GRAGRFG KG+
Sbjct: 397 HKRILVATDLVGRGIDIERVNIVINYDMP--------DSADTYLHRVGRAGRFGTKGLAI 448
Query: 438 NLLMDGDDMIIMEKIERYFDIKVTEV 463
+ D ++ +++ F++ + E+
Sbjct: 449 TFVASASDSEVLNQVQERFEVDIKEL 474
Score = 187 (70.9 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 56/197 (28%), Positives = 94/197 (47%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
+E +KV ++ ++K G ++ F D L PELL+ + V+ F+ PS++Q
Sbjct: 19 EEDEKVPDSGNKVNGEAVKKGYVG----IHSSGFRDFLLKPELLRAI-VDSGFEHPSEVQ 73
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
+P + ++I QA++G GKT FVL L +++P+ AL +C TRELA Q
Sbjct: 74 HECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQIC 131
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKR--PPVTAQVVIGTPGTIKKWMSAKKLGFS 246
+ + T + +V N + I K +V+GTPG + K L
Sbjct: 132 NEFVRFSTYLPDT-KVSVFYGGVN-IKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLK 189
Query: 247 RLKILVYDEADHMLDEV 263
++ + DE D ML+ +
Sbjct: 190 NVRHFILDECDKMLESL 206
Score = 44 (20.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL 297
+V++FSAT ++ ++ + K + Q F++ E +S+
Sbjct: 224 QVMMFSATLSKEIRP----VCKKFMQDFLENETVSV 255
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 108/372 (29%), Positives = 177/372 (47%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ P + G+ ++ P+ IQA ++P ++ R+++ A+ G+GKT F L +
Sbjct: 3 FKSFGFHPAVATGI-AAAGYETPTPIQAQAIPAVMAG--RDVMGLAQTGTGKTAAFALPI 59
Query: 162 LSRVDPNLKAP-QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L R+ + +AL I PTRELA Q + +G+ T + S N P ++
Sbjct: 60 LHRLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVN--PQVQKL 117
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262
A+VV+ PG + ++ + SRL++LV DEAD M D +
Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQ 177
Query: 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 322
LLFSAT ++ I+ D + V+ ++ + +Y ++ K ++ + +
Sbjct: 178 TLLFSATMPIDIRTLAQDILVD--PVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLR 235
Query: 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382
+ +IF RTK+ A L + L+ GY ++ G Q R + F+DG Q+L
Sbjct: 236 HTDTE--SVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293
Query: 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442
++TD+ ARG D QV+ ++NYD P E Y+HRIGR GR R G F L+
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIP--------DTAEAYIHRIGRTGRAARSGDAFTLVTS 345
Query: 443 GDDMIIMEKIER 454
DD ++ IER
Sbjct: 346 -DDGAMVRAIER 356
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 366 (133.9 bits), Expect = 3.4e-33, P = 3.4e-33
Identities = 114/367 (31%), Positives = 171/367 (46%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D N +L+ + ++ F +P+ IQA PM L R+LI A GSGKT ++L
Sbjct: 167 FQDANFPDNILEAI-AKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPA 223
Query: 162 LSRVD--PNL---KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L V P L P L + PTRELA+Q E RK G +G+ S C Y
Sbjct: 224 LVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI-------YGGA 276
Query: 217 SKRPPVT-----AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------- 261
K P + ++VI TPG + + + R+ LV DEAD MLD
Sbjct: 277 PKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKI 336
Query: 262 --------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 313
+ LL+SAT+ V+ + ++D + + +L + E+
Sbjct: 337 VSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI----EIVP 392
Query: 314 VMVIRDRIFELGEKM---GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 370
+R+ L +++ + +IFV TK + + L+ G+ I G Q ERD++
Sbjct: 393 TPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRV 452
Query: 371 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 430
+ EFK G + ++ +TDV ARG D + + +VNYD P LE Y+HRIGR GR
Sbjct: 453 LAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFP----NTLED----YIHRIGRTGRA 504
Query: 431 GRKGVVF 437
G KG+ F
Sbjct: 505 GAKGMAF 511
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 107/363 (29%), Positives = 183/363 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS +L++ L +PS IQ + +P +LT +++ A A GSGKT + L
Sbjct: 24 SFSSLALSADLIQAL--PKAITEPSAIQTLVIPAMLTG--KDVFALANTGSGKTLAYGLP 79
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYVPISKR 219
+L R+ + + QAL + PTRELA+Q EVL +G G+ + C D T
Sbjct: 80 LLERLKTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE 138
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
P +++ T G + ++ L +R+ LV DEAD +LD
Sbjct: 139 NP---NILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+ ++ SATF++ +K ++++ Q+ E S+ Q +Y ++ +K + +
Sbjct: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPEN-SINQAVQETLYLVNKGSKTQALVALL 253
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+ + Q ++F+ K +A +L K L G T + G Q ER+ + EFK+G TQV
Sbjct: 254 KQ--HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQV 311
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG + + +++N++ P+ H E Y+HR+GR R G+ G+ +L+
Sbjct: 312 LIATDLLARGIHIELLPVVINFELPM-HA-------ETYVHRVGRTARAGQHGIALSLVC 363
Query: 442 DGD 444
G+
Sbjct: 364 HGE 366
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 107/363 (29%), Positives = 183/363 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS +L++ L +PS IQ + +P +LT +++ A A GSGKT + L
Sbjct: 24 SFSSLALSADLIQAL--PKAITEPSAIQTLVIPAMLTG--KDVFALANTGSGKTLAYGLP 79
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYVPISKR 219
+L R+ + + QAL + PTRELA+Q EVL +G G+ + C D T
Sbjct: 80 LLERLKTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE 138
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261
P +++ T G + ++ L +R+ LV DEAD +LD
Sbjct: 139 NP---NILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+ ++ SATF++ +K ++++ Q+ E S+ Q +Y ++ +K + +
Sbjct: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPEN-SINQAVQETLYLVNKGSKTQALVALL 253
Query: 322 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+ + Q ++F+ K +A +L K L G T + G Q ER+ + EFK+G TQV
Sbjct: 254 KQ--HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQV 311
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441
LI+TD+LARG + + +++N++ P+ H E Y+HR+GR R G+ G+ +L+
Sbjct: 312 LIATDLLARGIHIELLPVVINFELPM-HA-------ETYVHRVGRTARAGQHGIALSLVC 363
Query: 442 DGD 444
G+
Sbjct: 364 HGE 366
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 261 (96.9 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 62/203 (30%), Positives = 111/203 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 320
+V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D
Sbjct: 238 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDL 296
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ L + Q +IFV++ AL + L + + I QEER ++FKD +
Sbjct: 297 LDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 354
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 355 ILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFV 406
Query: 441 MDGDDMIIMEKIERYFDIKVTEV 463
D +D I+ ++ F++ ++E+
Sbjct: 407 SDENDAKILNDVQDRFEVNISEL 429
Score = 161 (61.7 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 66/227 (29%), Positives = 104/227 (45%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAP 172
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P +
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVYLG 117
Query: 173 QAL-----CI-------CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+ L C+ C TRELA Q + + K+ + AV + I K
Sbjct: 118 RVLGRGFWCVFVSVLVMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDE 173
Query: 221 PVTAQ----VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEV 263
V + +V+GTPG I K L +K + DE D ML+++
Sbjct: 174 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 220
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 361 (132.1 bits), Expect = 5.7e-33, P = 5.7e-33
Identities = 110/367 (29%), Positives = 166/367 (45%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF D L+ +LK + E + P+ IQ ++P IL ++ A+ G+GKT FVL
Sbjct: 4 TTFADFGLAENILKAV-TESGYTIPTPIQREAIPHILMGG--DVTGVAQTGTGKTAAFVL 60
Query: 160 GMLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
M+ R+ + P+ L +CPTRELA Q E K GK+ +T + S
Sbjct: 61 PMIQRLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQET 120
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------- 261
+ V V+I TPG + KL ++ L+ DEAD MLD
Sbjct: 121 LLQRGV--DVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLP 178
Query: 262 ---EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 318
+ LLFSATF ++ KD ++ V + + E++ Q+ V P K
Sbjct: 179 ANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTA 238
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
R + I+F K + +L G++ I G Q R + ++ F+DG
Sbjct: 239 LRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGK 298
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
++L+++DV ARG D V + N+ PP P E Y+HRIGR GR GR G +
Sbjct: 299 LKLLVASDVAARGLDIPDVGHVFNFGPP--------PKDEDYVHRIGRTGRAGRTGESYT 350
Query: 439 LLMDGDD 445
++ DD
Sbjct: 351 VVTPADD 357
>WB|WBGene00020284 [details] [associations]
symbol:mel-46 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006898
GO:GO:0040010 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K13131 GeneTree:ENSGT00530000062880 EMBL:CU457744 EMBL:EU051652
RefSeq:NP_001255908.1 RefSeq:NP_001255909.1 UniGene:Cel.7369
ProteinModelPortal:G5ED26 SMR:G5ED26 EnsemblMetazoa:T06A10.1a
EnsemblMetazoa:T06A10.1b GeneID:178469 KEGG:cel:CELE_T06A10.1
CTD:178469 WormBase:T06A10.1a WormBase:T06A10.1b OMA:SATYPRN
NextBio:901260 Uniprot:G5ED26
Length = 973
Score = 369 (135.0 bits), Expect = 8.3e-33, P = 8.3e-33
Identities = 108/366 (29%), Positives = 175/366 (47%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S TFE L + + L+ L +F +PS +QA ++P+ L R+++ QA++G+GKT F
Sbjct: 20 SNCTFESLMIGQKTLERLK-NSQFDRPSPVQARAIPVGLLG--RDMLVQAKSGTGKTLVF 76
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV--PTDSTNYVP 215
+ + +D Q + + PTRE+++Q E +RK+ TG + V N +
Sbjct: 77 SVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP-TGARTSVYVGGSAHKLNLID 135
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVL----------- 264
+ + P Q+VIGTPG I + + + S + V DEAD ++DEV
Sbjct: 136 LKQTRP---QIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEVFRDDINIIINSL 192
Query: 265 -------LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-CPDELAKVMV 316
+FSAT+ + N ++ ++D + +++ L +KQY V C L K+
Sbjct: 193 PQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYVVAKCSPMLEKLTH 252
Query: 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ I + Q ++F + + LK G +VT + A Q++R V + +
Sbjct: 253 VLKSI-----RYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVDQLRA 307
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
++L+S+D+ ARG D VNL+VN D E Y HRIGRA RFG G
Sbjct: 308 KRVKILVSSDLTARGIDADNVNLVVNIDAAANE--------ETYFHRIGRAARFGAHGAA 359
Query: 437 FNLLMD 442
LL D
Sbjct: 360 VTLLED 365
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 112/397 (28%), Positives = 198/397 (49%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
T FE L P ++ ++ + F +P+ IQ +P +L ++I Q++ G+GKT ++L
Sbjct: 4 TKFELYELKPFIIDAVH-RLGFYEPTDIQKRLIPAVLKK--ESVIGQSQTGTGKTHAYLL 60
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM--GKH-TGITSECAVP-TDSTNYVP 215
+L+++DP Q + PTRELA Q + K+ G+ + I S+C + TD +
Sbjct: 61 PLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSID 120
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------- 261
K P +V+GTPG I + + L + + LV DEAD MLD
Sbjct: 121 KLKIQP---HLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRM 177
Query: 262 ----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA-KVMV 316
++L+FSAT E +K F+ + +++ V+ ++++ ++ + P + K +
Sbjct: 178 PEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEH--ILIPSKHRDKDKL 235
Query: 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ D + L +G I+F TKN+A + + L G ++ + G ER K++K+ D
Sbjct: 236 LFDIMSHLNPYLG--IVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQIND 293
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+I+TD+ ARG D + V+ ++NY+ P D + Y+HR+GR R G G
Sbjct: 294 LEFTYIIATDLAARGIDIKGVSHVINYELP--------DDLDFYVHRVGRTARAGSSGQA 345
Query: 437 FNL--LMDGDDMIIMEK--IE-RYFDIKVTEVRNSDE 468
+ L D D ++ +EK IE Y +++ E + D+
Sbjct: 346 MTIYELTDEDALVRLEKMGIEFEYLELEKGEWKKGDD 382
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 119/415 (28%), Positives = 197/415 (47%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
DE DS + + T TF+DL ++ L + ++ + KP+KIQ ++P+ L
Sbjct: 4 DEEPDSPTEALQTA-AEEEETKTFKDLGVTDVLCEACD-QLGWAKPTKIQIEAIPLALQG 61
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++I A GSGKT F L +L+ + + AL + PTRELA Q E +G
Sbjct: 62 --RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 119
Query: 199 GITSECAVPT---DSTNY-VPISKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVY 253
G+ +CAV DS + + ++K+P +VI TPG + + + K LK LV
Sbjct: 120 GV--QCAVIVGGIDSMSQSLALAKKP----HIVIATPGRLIDHLENTKGFNLRALKYLVM 173
Query: 254 DEADHML--------DEVL----------LFSATFNETVKNFVTRIVKDYNQLFVKKEEL 295
DEAD +L D++L LFSAT + V+ +K+ + V +
Sbjct: 174 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ 233
Query: 296 SLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYE 354
++E ++QY ++ P + ++ + L E G + +IF T N+ L++ G+
Sbjct: 234 TVEKLQQYYLFIPSKFKDTYLV----YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT 289
Query: 355 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 414
+ G Q +R + +FK +L++TDV +RG D V+++VN+D P H K
Sbjct: 290 AIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD-- 346
Query: 415 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
Y+HR+GR R GR G + D + + ++IE K+ DE+
Sbjct: 347 -----YIHRVGRTARAGRSGKAITFVTQYD-VELFQRIEHLIGKKLPVFPTQDEE 395
>UNIPROTKB|F1MAM8 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 GeneTree:ENSGT00530000062880 IPI:IPI00947925
RefSeq:NP_001178640.1 UniGene:Rn.137424 Ensembl:ENSRNOT00000068152
GeneID:84473 KEGG:rno:84473 NextBio:616964 ArrayExpress:F1MAM8
Uniprot:F1MAM8
Length = 824
Score = 225 (84.3 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 67/204 (32%), Positives = 106/204 (51%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRD 319
++L SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ +
Sbjct: 238 QMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKT 297
Query: 320 R-IFELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ + EL K+ Q ++F + A L L G+ I G Q +R + + K
Sbjct: 298 QHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQ 357
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G+
Sbjct: 358 FHCRVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLGLT 409
Query: 437 FNLLMDGDDMIIMEKIERYFDIKV 460
G++ +M KI + +I +
Sbjct: 410 VTYCCRGEEENMMMKIAQKCNINL 433
Score = 209 (78.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 69/218 (31%), Positives = 106/218 (48%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKF-LDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
+ TSE AEL+ + E + + L A D TGD FE L LS
Sbjct: 11 STTSESAMAAELEAAPVPAAEPTPASPWNLRTAHDIGGPRTRTGDVVLAEPADFESLLLS 70
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDP 167
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S +
Sbjct: 71 RPVLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILE 127
Query: 168 NLKAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTA 224
N Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K
Sbjct: 128 NYST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKC 181
Query: 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262
+ +G+PG IK+ + L +++ + DEAD +L+E
Sbjct: 182 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 219
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 119/415 (28%), Positives = 196/415 (47%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
DE DS + T TF+DL ++ L + ++ + KP+KIQ ++P+ L
Sbjct: 4 DEEPDSPSGALQTA-AEEEETKTFKDLGVTDVLCEACD-QLGWAKPTKIQIEAIPLALQG 61
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++I A GSGKT F L +L+ + + AL + PTRELA Q E +G
Sbjct: 62 --RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 119
Query: 199 GITSECAVPT---DSTNY-VPISKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVY 253
G+ +CAV DS + + ++K+P +VI TPG + + + K LK LV
Sbjct: 120 GV--QCAVIVGGIDSMSQSLALAKKP----HIVIATPGRLIDHLENTKGFNLRALKYLVM 173
Query: 254 DEADHML--------DEVL----------LFSATFNETVKNFVTRIVKDYNQLFVKKEEL 295
DEAD +L D++L LFSAT + V+ +K+ + V +
Sbjct: 174 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ 233
Query: 296 SLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYE 354
++E ++QY ++ P + ++ + L E G + +IF T N+ L++ G+
Sbjct: 234 TVEKLQQYYLFIPSKFKDTYLV----YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT 289
Query: 355 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 414
+ G Q +R + +FK +L++TDV +RG D V+++VN+D P H K
Sbjct: 290 AIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD-- 346
Query: 415 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
Y+HR+GR R GR G + D + + ++IE K+ DE+
Sbjct: 347 -----YIHRVGRTARAGRSGKAITFVTQYD-VELFQRIEHLIGKKLPVFPTQDEE 395
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 221 (82.9 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 63/216 (29%), Positives = 108/216 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFV--KKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ +LFSAT + V + + + ++FV KK L + + +V EL + ++
Sbjct: 438 QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIY 497
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
EL + +TIIF R+K A + T I G+ QE+R + +++F+DG
Sbjct: 498 LCKELFHR--RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
L++TDV +RG D + + +++NY+ P H EVYLHR+GR R GR G L
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAPATH--------EVYLHRVGRTARAGRSGRAITL 607
Query: 440 LMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALK 475
+GD ++ + + + + T++ N + DF K
Sbjct: 608 AGEGDRKVL-KGVFKNSSAQNTKLVNRNLDFNKVEK 642
Score = 211 (79.3 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 75/235 (31%), Positives = 119/235 (50%)
Query: 49 TANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
T + + D + D E +E K N F AE K++ T T+ ++F+ +NLS
Sbjct: 216 TQDFNSDSAAGSSDSEE-DEEEIAKKNAFF--AEGDKEKSMMT-----TTHSSFQSMNLS 267
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--D 166
+LKGL + F+ P++IQ ++P+ L ++++ A GSGKT F++ +L R+
Sbjct: 268 RPILKGLS-NLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 167 PNLKAP--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPV 222
P K P + L +CPTRELA+Q V K+ T I + S + KRP
Sbjct: 325 PK-KVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP-- 381
Query: 223 TAQVVIGTPGTIKKWMSAKKLGFS--RLKILVYDEADHMLDEVLLFSATFNETVK 275
+VI TPG M + GF+ ++I+V DEAD ML++ F+ NE ++
Sbjct: 382 --DIVIATPGRFIDHMRNSQ-GFTVENIEIMVMDEADRMLEDG--FADELNEIIQ 431
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 354 (129.7 bits), Expect = 4.0e-32, P = 4.0e-32
Identities = 115/390 (29%), Positives = 183/390 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYT-SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL 136
L + ++ ++TT D TF++LNL P+LL+ + MKF KP+ IQ+ ++P L
Sbjct: 100 LSSSSSTTSSSITTIDPDAELKFKTFKELNLVPDLLESIE-SMKFTKPTPIQSEAIPHAL 158
Query: 137 TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196
+++I A+ GSGKT F + +L + + AL + PTREL Q + +G
Sbjct: 159 EG--KDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELTFQIKDTFDALGS 216
Query: 197 HTGITSECAVP-TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS-AKKLGFSRLKILVYD 254
G+ S C V D + R P V++ TPG I + K LK LV D
Sbjct: 217 SMGLRSSCIVGGMDMMDQARDLMRKP---HVIVATPGRIMDHLEHTKGFSLKNLKYLVMD 273
Query: 255 EADHMLD--------EVL----------LFSATFNETVKNFVTRIVKDYNQLFVKKEELS 296
EAD +LD ++L LFSAT ++ + + ++ V + +
Sbjct: 274 EADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQT 333
Query: 297 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKAL--KDFGYE 354
+++ Q + D ++I L E MG++II V T+ A A AL + G+
Sbjct: 334 ADNLVQSMMLVNDGYKNTILIH----LLNEFMGKSII-VFTRTVAHAQRTALLARILGFN 388
Query: 355 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 414
+ G Q +R + +FK +L++TDV ARG D V++++NYD P
Sbjct: 389 AVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPT------- 441
Query: 415 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444
D + Y+HR+GR R GR G +L+ D
Sbjct: 442 -DSKAYIHRVGRTARAGRSGKSISLITQYD 470
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 355 (130.0 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 113/414 (27%), Positives = 200/414 (48%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
D+ ++ +K + T + TFEDLN+ E+L+ + E+ ++KP++IQ LP
Sbjct: 135 DDVKNGEVKNLVTNEEREKQNVTFEDLNICEEILESIK-ELGWKKPTEIQREILPHAFLK 193
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
+++I + GSGKT CF++ +L + N ++ AL I PTREL IQ + + +G +
Sbjct: 194 --KDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNL 251
Query: 199 GITSECAV--PTDS-TNYVPISKRPPVTAQVVIGTPGTIKKWMS-AKKLGFSRLKILVYD 254
+ + C + D T + ++K+P V++ TPG I ++ K LK LV+D
Sbjct: 252 -LINICTIYGGVDIVTQSLNLAKKP----NVIVSTPGRILDHLNNTKGFNLKNLKYLVFD 306
Query: 255 EADHMLDE-----------VL-------LFSATFNETVKNFVTRIVKDYNQLFVKKEELS 296
EAD +L + +L LFSAT + V +K+ ++ V + +
Sbjct: 307 EADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYST 366
Query: 297 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 356
+ ++ + ++ P + K + F + IIF T +A L+ ++ G +
Sbjct: 367 VSTLIETYIFLPLKY-KYTYLSSLCFHYQTR--NIIIFTNTCATAQKLNFFCRNLGLKSI 423
Query: 357 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 416
+ G Q +R + FK +LIST V ARG D Q + +++N+D
Sbjct: 424 CLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDIC---------S 474
Query: 417 CEVYLHRIGRAGRFGRKG--VVFNLLMDGDDMIIMEK-IERYFDIKVTEVRNSD 467
C+ Y+HR+GR R GR G + F D ++ + +EK + + D K T++ +D
Sbjct: 475 CKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKID-KFTDLDEND 527
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 355 (130.0 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 113/414 (27%), Positives = 200/414 (48%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
D+ ++ +K + T + TFEDLN+ E+L+ + E+ ++KP++IQ LP
Sbjct: 135 DDVKNGEVKNLVTNEEREKQNVTFEDLNICEEILESIK-ELGWKKPTEIQREILPHAFLK 193
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
+++I + GSGKT CF++ +L + N ++ AL I PTREL IQ + + +G +
Sbjct: 194 --KDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNL 251
Query: 199 GITSECAV--PTDS-TNYVPISKRPPVTAQVVIGTPGTIKKWMS-AKKLGFSRLKILVYD 254
+ + C + D T + ++K+P V++ TPG I ++ K LK LV+D
Sbjct: 252 -LINICTIYGGVDIVTQSLNLAKKP----NVIVSTPGRILDHLNNTKGFNLKNLKYLVFD 306
Query: 255 EADHMLDE-----------VL-------LFSATFNETVKNFVTRIVKDYNQLFVKKEELS 296
EAD +L + +L LFSAT + V +K+ ++ V + +
Sbjct: 307 EADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYST 366
Query: 297 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 356
+ ++ + ++ P + K + F + IIF T +A L+ ++ G +
Sbjct: 367 VSTLIETYIFLPLKY-KYTYLSSLCFHYQTR--NIIIFTNTCATAQKLNFFCRNLGLKSI 423
Query: 357 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 416
+ G Q +R + FK +LIST V ARG D Q + +++N+D
Sbjct: 424 CLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDIC---------S 474
Query: 417 CEVYLHRIGRAGRFGRKG--VVFNLLMDGDDMIIMEK-IERYFDIKVTEVRNSD 467
C+ Y+HR+GR R GR G + F D ++ + +EK + + D K T++ +D
Sbjct: 475 CKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKID-KFTDLDEND 527
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 113/393 (28%), Positives = 193/393 (49%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+ TTF +L L LL+ L + F +P+ IQA ++P L R+++ A G+GKT +
Sbjct: 2 TVTTFSELELDESLLEALQ-DKGFTRPTAIQAAAIPPALDG--RDVLGSAPTGTGKTAAY 58
Query: 158 VLGMLSRV-D-PNLKA--PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
+L L + D P K+ P+ L + PTRELA+Q + R++ KHT + + A T Y
Sbjct: 59 LLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL--DIATITGGVAY 116
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------EVLLF 266
+ ++ +V+ T G + +++ + ++ L+ DEAD MLD E +
Sbjct: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176
Query: 267 SATFNETVKNFVTRIVKDYNQLFVKK--E---ELSLE-SVKQYK-----VYCPDELAKVM 315
+ + F + D Q F ++ E E+S S ++ K Y D+L
Sbjct: 177 ETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKT 236
Query: 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 375
+ + + E ++I+FVR + L L++ G + G +Q +R++ +K
Sbjct: 237 ALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 295
Query: 376 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 435
+G VL++TDV ARG D V+ + N+D P + G + YLHRIGR R GRKG
Sbjct: 296 EGRVNVLVATDVAARGIDIPDVSHVFNFDMP-RSG-------DTYLHRIGRTARAGRKGT 347
Query: 436 VFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468
+L+ + D +++ K+ RY + + + R DE
Sbjct: 348 AISLV-EAHDHLLLGKVGRYIEEPI-KARVIDE 378
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 108/383 (28%), Positives = 178/383 (46%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF DL L P LL+ + EM F +P+++QA ++P L A G
Sbjct: 4 TFADLELDPILLEAIE-EMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 161 MLSRVDPNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218
P KA A L + PTRELA+Q E + + K+T + T Y +
Sbjct: 63 QYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLN--IFTITGGVQYQEHAD 120
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
T +V+ TPG + +++ A++ ++ L+ DEAD MLD
Sbjct: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR 180
Query: 262 -EVLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ LLFSAT V+ F ++KD + + + + Q+ D KV +++
Sbjct: 181 KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
+ E E+ +I+F++T+ + L L+ I G Q+ R+ + F++G
Sbjct: 241 ILTEQAER---SIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDV 297
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
+L++TDV ARG D ++ ++N+D P +VYLHRIGR GR G+KG+ +L
Sbjct: 298 NILLATDVAARGIDVPDISHVINFDLP--------RSADVYLHRIGRTGRAGKKGIAISL 349
Query: 440 LMDGDDMIIMEKIERYFDIKVTE 462
+ + D +M ++ERY +V E
Sbjct: 350 V-EAHDQPMMARVERYIKEEVKE 371
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 108/383 (28%), Positives = 178/383 (46%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF DL L P LL+ + EM F +P+++QA ++P L A G
Sbjct: 4 TFADLELDPILLEAIE-EMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 161 MLSRVDPNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218
P KA A L + PTRELA+Q E + + K+T + T Y +
Sbjct: 63 QYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLN--IFTITGGVQYQEHAD 120
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
T +V+ TPG + +++ A++ ++ L+ DEAD MLD
Sbjct: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR 180
Query: 262 -EVLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
+ LLFSAT V+ F ++KD + + + + Q+ D KV +++
Sbjct: 181 KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
+ E E+ +I+F++T+ + L L+ I G Q+ R+ + F++G
Sbjct: 241 ILTEQAER---SIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDV 297
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439
+L++TDV ARG D ++ ++N+D P +VYLHRIGR GR G+KG+ +L
Sbjct: 298 NILLATDVAARGIDVPDISHVINFDLP--------RSADVYLHRIGRTGRAGKKGIAISL 349
Query: 440 LMDGDDMIIMEKIERYFDIKVTE 462
+ + D +M ++ERY +V E
Sbjct: 350 V-EAHDQPMMARVERYIKEEVKE 371
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 118/405 (29%), Positives = 190/405 (46%)
Query: 66 LTIDE-SKKVNKFLDEAEDSSIKTV--TTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKF 121
LT D+ + +NK ++ + SS K+ GD+ A TF++L + EL + ++ F
Sbjct: 8 LTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACE-KLGF 66
Query: 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181
+ P+ IQ ++P++L R++I A+ GSGKT F L ++ + N A+ + PTR
Sbjct: 67 KTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 182 ELAIQNLEVLRKMGKHTGITSECAVP-TDS-TNYVPISKRPPVTAQVVIGTPGTIKKWM- 238
ELA Q E +G G+ S V D T V +SK+P V++ TPG + +
Sbjct: 125 ELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKP----HVLVCTPGRLMDHLE 180
Query: 239 SAKKLGFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTR 280
+ K LK L+ DEAD +LD LLFSAT V+
Sbjct: 181 NTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRA 240
Query: 281 IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTII-FVRTKN 339
+ ++ V + +++++ Q ++ P + ++ + + E G +II F RT N
Sbjct: 241 SLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLV----YLVNELAGNSIIIFARTVN 296
Query: 340 SASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399
L L+ G+ + G Q R + +FK G L++TDV ARG D V++
Sbjct: 297 DTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDV 356
Query: 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444
++NYD P D + Y+HR+GR R GR G L+ D
Sbjct: 357 VINYDIPT--------DSKAYIHRVGRTARAGRAGKSIALVTQYD 393
>WB|WBGene00018997 [details] [associations]
symbol:F57B9.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 GO:GO:0019915 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 GeneTree:ENSGT00530000062880 KO:K03257
PIR:E88493 RefSeq:NP_498514.1 UniGene:Cel.32055
ProteinModelPortal:Q20935 SMR:Q20935 STRING:Q20935 PaxDb:Q20935
EnsemblMetazoa:F57B9.3 GeneID:186440 KEGG:cel:CELE_F57B9.3
UCSC:F57B9.3 CTD:186440 WormBase:F57B9.3 InParanoid:Q20935
NextBio:931850 Uniprot:Q20935
Length = 363
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 108/380 (28%), Positives = 195/380 (51%)
Query: 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSR 164
+ L ELL+G+Y F+KPS IQ ++ T +++ Q++ GSGKT ++ +L
Sbjct: 1 MELKEELLRGIY-GFGFEKPSAIQKSAVAPCTTG--KDVTIQSQAGSGKTVISLIDILQG 57
Query: 165 VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTA 224
+D Q + + P R +A + E L+ +G++ + + C + D+T ++ ++
Sbjct: 58 IDCEDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATC-LGFDTT-----AENDKIS- 110
Query: 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLF 266
V++GTP K ++S SR+K+ V DEAD ML +V+L
Sbjct: 111 HVLMGTP---KDFLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLL 167
Query: 267 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326
SAT V + R ++D ++ VKK+EL+LE ++Q+ + + K + D + E
Sbjct: 168 SATMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRE 227
Query: 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386
Q +IF T+ + L + L +V+ G ER+ +VK+F T+VL++TD
Sbjct: 228 T--QALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTD 285
Query: 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 446
++ARG + ++ +LI+NYD + + E Y+ R GR G FG KG+ + + +D+
Sbjct: 286 LMARGMNIRK-SLIINYD--------VSGNMENYMLRNGRQGNFGSKGLPISFFTE-NDI 335
Query: 447 IIMEKIERYFDIKVTEVRNS 466
++KIE ++ ++ E+ S
Sbjct: 336 SDLKKIENHYSTRIEEMPES 355
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 217 (81.4 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
Identities = 63/210 (30%), Positives = 103/210 (49%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ----YKVYCPDELA--KVM 315
+ L FSAT ++ + ++ V ++ + E+++Q +K D A K
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRA 239
Query: 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 375
V+R I GEK IIF K + K+L+ +GY+ I G Q +R + + F+
Sbjct: 240 VLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299
Query: 376 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 435
+G ++L+++DV ARG D V+ + N+D P G H P E Y+HRIGR GR GR G
Sbjct: 300 EGKLRLLVASDVAARGLDVPSVSHVFNFDVP---G-H--P--EDYVHRIGRTGRAGRDGK 351
Query: 436 VFNLLMDGDDMIIMEKIERYFDIKVTEVRN 465
L + D+ + + IE+ + + N
Sbjct: 352 AITLCIPRDEKAL-DAIEKLIQKDIPRLEN 380
Score = 204 (76.9 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
Identities = 57/165 (34%), Positives = 87/165 (52%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
T F +LNL+P++LK + E ++ P+ IQA ++P L R+++ A+ G+GKT F L
Sbjct: 2 TKFSELNLNPKVLKAIE-EAGYETPTPIQAGAIPPALEG--RDVLGIAQTGTGKTASFTL 58
Query: 160 GM---LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
M L+R + P++L +CPTRELA Q E KH +T A+ ++
Sbjct: 59 PMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTK--ALLIGGVSFKEQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
V+I TPG + KL + ++I+V DEAD MLD
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLD 161
Score = 44 (20.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 63 VEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPEL 111
V+ + +DE+ ++ LD I+ + + TP+T T F ++PE+
Sbjct: 148 VQIMVVDEA---DRMLDMGFIPDIERIFSL-TPFTRQTLFFSATMAPEI 192
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 232 (86.7 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 72/234 (30%), Positives = 108/234 (46%)
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLFS 267
+V+ TPG + + K L + L DEAD M+D + LLFS
Sbjct: 312 IVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFS 371
Query: 268 ATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326
AT + ++NF + +VK + V + + +V Q Y E AKV+ + D + +
Sbjct: 372 ATMPKKIQNFARSALVKPVT-INVGRAGAASMNVTQQVEYVKQE-AKVVYLLDCLQKTAP 429
Query: 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386
+ +IF K +H+ L G E I G QEER + V ++ G VL++TD
Sbjct: 430 PV---LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATD 486
Query: 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
V ++G D V ++NYD P D E Y+HRIGR GR KG+ L+
Sbjct: 487 VASKGLDFPNVQHVINYDMP--------DDIENYVHRIGRTGRSNTKGLATTLI 532
Score = 191 (72.3 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 59/197 (29%), Positives = 94/197 (47%)
Query: 80 EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP 139
EA ++ + G+TP +F ++ +L GL + + P+ IQ LP +L
Sbjct: 157 EAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAK-GIKNPTPIQVQGLPTVLAG- 214
Query: 140 YRNLIAQARNGSGKTTCFVLGMLS---RVDPNL-----KAPQALCICPTRELAIQNLEVL 191
R+LI A GSGKT FVL ++ + +L + P L ICP+RELA Q E++
Sbjct: 215 -RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEII 273
Query: 192 RKMGKHTGITSECAVPTDST----NYVPISKRPPVTAQ---VVIGTPGTIKKWMSAKKLG 244
+ KH C +P + +P+S+ V ++ +V+ TPG + + K L
Sbjct: 274 QHYSKHL---QACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILT 330
Query: 245 FSRLKILVYDEADHMLD 261
+ L DEAD M+D
Sbjct: 331 LDMCRYLCMDEADRMID 347
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 340 (124.7 bits), Expect = 9.4e-32, Sum P(2) = 9.4e-32
Identities = 108/377 (28%), Positives = 174/377 (46%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
+G P ++F +L+ + + ++ +P+ IQ +P+ ++ R++I A+ G
Sbjct: 239 SGAAPPRPGSSFAHFGFDEQLMHQIR-KSEYTQPTPIQCQGVPVAMSG--RDMIGIAKTG 295
Query: 151 SGKTTCFVLGMLSRV--DPNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205
SGKT F+ ML + L+ P A+ +CPTREL Q ++ GK + S A
Sbjct: 296 SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRS-VA 354
Query: 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---- 261
V + + +K A++V+ TPG + + K R+ LV+DEAD M D
Sbjct: 355 VYGGGSMWEQ-AKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFE 413
Query: 262 --------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 307
+ LLFSATF + ++ I+ D ++ + E V Q
Sbjct: 414 YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIF 473
Query: 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 367
P +K + R+ E G ++FV K +A L LK + + + G Q ER
Sbjct: 474 PSGPSKWNWLTRRLVEFTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSER 532
Query: 368 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427
+K++ EFK +L++TDV ARG D + ++NYD + D + + HRIGR
Sbjct: 533 NKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD--------VARDIDTHTHRIGRT 584
Query: 428 GRFGRKGVVFNLLMDGD 444
GR G KGV + LL D
Sbjct: 585 GRAGEKGVAYTLLTPKD 601
Score = 40 (19.1 bits), Expect = 9.4e-32, Sum P(2) = 9.4e-32
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 54 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIK 87
E++ E D +G I SKK+ L + S I+
Sbjct: 171 EEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIE 204
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 124/430 (28%), Positives = 199/430 (46%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
+E + +E D E E KKV K ++ S+ T D + S F +LNL PEL+
Sbjct: 37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELI 93
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172
+ + + KP+ IQ+ ++P L ++I A+ GSGKT F + +L+R+ + +
Sbjct: 94 QACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY 150
Query: 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYV-PISKRPPVTAQVVIGT 230
A + PTRELA Q E +G G+ S C V + + + ++P + ++
Sbjct: 151 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI---IIATP 207
Query: 231 PGTIKKWMSAKKLGFSRLKILVYDEADHMLD----EVL---------------LFSATFN 271
+ + K +LK LV DEAD +LD VL LFSAT
Sbjct: 208 GRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMT 267
Query: 272 ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQT 331
+ + + + V + +++++ Q + P L +I + L E +G+T
Sbjct: 268 SKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLI----YLLNEFIGKT 323
Query: 332 -IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390
IIF RTK +A L + T + G Q +R + FK G +L++TDV AR
Sbjct: 324 MIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAAR 383
Query: 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 450
G D V+++VNYD PV D + Y+HR+GR R GR G +L+ D +I+
Sbjct: 384 GLDIPSVDIVVNYDIPV--------DSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL- 434
Query: 451 KIERYFDIKV 460
+IE K+
Sbjct: 435 RIEEVLGKKL 444
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 111/391 (28%), Positives = 188/391 (48%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+DL ++ L + ++ + KP+KIQ ++P+ L R++I A GSGKT F L
Sbjct: 25 TFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALP 81
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNY-VPISK 218
+L+ + + AL + PTRELA Q E +G G+ S V DS + + ++K
Sbjct: 82 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 219 RPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHML--------DEVL----- 264
+P ++I TPG + + + K LK LV DEAD +L D++L
Sbjct: 142 KP----HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197
Query: 265 -----LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
LFSAT + V+ +K+ + V + ++E ++QY ++ P + ++
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLV-- 255
Query: 320 RIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ L E G + +IF T N+ L++ G+ + G Q +R + +FK
Sbjct: 256 --YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKA 313
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+L++TDV +RG D V+++VN+D P H K Y+HR+GR R GR G
Sbjct: 314 RSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD-------YIHRVGRTARAGRSGKAIT 365
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+ D + + ++IE K+ D++
Sbjct: 366 FVTQYD-VELFQRIEHLIGKKLPGFPTQDDE 395
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 113/393 (28%), Positives = 190/393 (48%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+DL ++ L + ++ + KP+KIQ ++P+ L R++I A GSGKT F L
Sbjct: 27 TFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALP 83
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT---DSTNY-VPI 216
+L+ + + AL + PTRELA Q E +G G+ +CAV DS + + +
Sbjct: 84 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV--QCAVIVGGIDSMSQSLAL 141
Query: 217 SKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHML--------DEVL--- 264
+K+P +VI TPG + + + K LK LV DEAD +L D++L
Sbjct: 142 AKKP----HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 197
Query: 265 -------LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317
LFSAT + V+ +K+ + V + ++E ++QY ++ P + ++
Sbjct: 198 PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLV 257
Query: 318 RDRIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ L E G + +IF T N+ L++ G+ + G Q +R + +FK
Sbjct: 258 ----YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKA 313
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+L++TDV +RG D V+++VN+D P H K Y+HR+GR R GR G
Sbjct: 314 KARSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD-------YIHRVGRTARAGRSGKA 365
Query: 437 FNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+ D + + ++IE K+ D++
Sbjct: 366 ITFVTQYD-VELFQRIEHLIGKKLPVFPTQDDE 397
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 112/391 (28%), Positives = 188/391 (48%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+DL ++ L + ++ + KP+KIQ ++P+ L R++I A GSGKT F L
Sbjct: 51 TFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALP 107
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNY-VPISK 218
+L+ + + AL + PTRELA Q E +G G+ S V DS + + ++K
Sbjct: 108 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 167
Query: 219 RPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHML--------DEVL----- 264
+P +VI TPG + + + K LK LV DEAD +L D++L
Sbjct: 168 KP----HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 223
Query: 265 -----LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319
LFSAT + V+ +K+ + V + ++E ++QY ++ P + ++
Sbjct: 224 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLV-- 281
Query: 320 RIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ L E G + +IF T N+ L++ G+ + G Q +R + +FK
Sbjct: 282 --YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKA 339
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+L++TDV +RG D V+++VN+D P H K Y+HR+GR R GR G
Sbjct: 340 RSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD-------YIHRVGRTARAGRSGKAIT 391
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+ D + + ++IE K+ D++
Sbjct: 392 FVTQYD-VELFQRIEHLIGKKLPVFPTQDDE 421
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 107/359 (29%), Positives = 173/359 (48%)
Query: 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156
T AT F L LSP +L L + + + + IQA SLP+IL +LIAQA+ GSGKT
Sbjct: 3 TIATAFNTLPLSPAMLANLD-SLGYAQMTPIQAQSLPVILKG--MDLIAQAKTGSGKTAA 59
Query: 157 FVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
F +G+L+ ++P QAL ICPTRELA Q + +R++ + + ++ P
Sbjct: 60 FGIGLLNPINPRYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTL-CGGVSFGPQ 118
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSATFNETVKN 276
A +++GTPG I++ + L L LV DEAD MLD + + A + K
Sbjct: 119 IASLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLD-MGFYDAIEDIIEKT 177
Query: 277 FVTRIVKDYNQLF-VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG--EKMGQT-- 331
R ++ + V ++L+ + ++ + + I R +E+ E+M
Sbjct: 178 PSRRQTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQRFYEISPEERMSAVTK 237
Query: 332 ----------IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381
+ F TK L G + G Q +RD+++ F + T V
Sbjct: 238 VLHHFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSV 297
Query: 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
L++TDV ARG D +++++N + L D E+++HR+GR GR G KG+ +L+
Sbjct: 298 LVATDVAARGLDIDALDMVINVE--------LARDSEIHIHRVGRTGRAGEKGIAVSLV 348
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 340 (124.7 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 108/377 (28%), Positives = 174/377 (46%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
+G P ++F +L+ + + ++ +P+ IQ +P+ ++ R++I A+ G
Sbjct: 246 SGAAPPRPGSSFAHFGFDEQLMHQIR-KSEYTQPTPIQCQGVPVAMSG--RDMIGIAKTG 302
Query: 151 SGKTTCFVLGMLSRV--DPNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205
SGKT F+ ML + L+ P A+ +CPTREL Q ++ GK + S A
Sbjct: 303 SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRS-VA 361
Query: 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---- 261
V + + +K A++V+ TPG + + K R+ LV+DEAD M D
Sbjct: 362 VYGGGSMWEQ-AKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFE 420
Query: 262 --------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 307
+ LLFSATF + ++ I+ D ++ + E V Q
Sbjct: 421 YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIF 480
Query: 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 367
P +K + R+ E G ++FV K +A L LK + + + G Q ER
Sbjct: 481 PSGPSKWNWLTRRLVEFTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSER 539
Query: 368 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427
+K++ EFK +L++TDV ARG D + ++NYD + D + + HRIGR
Sbjct: 540 NKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD--------VARDIDTHTHRIGRT 591
Query: 428 GRFGRKGVVFNLLMDGD 444
GR G KGV + LL D
Sbjct: 592 GRAGEKGVAYTLLTPKD 608
Score = 41 (19.5 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 21/92 (22%), Positives = 33/92 (35%)
Query: 1 MADATENPAAPATLEPLPST--EPKRSWG---DVAXXXXXXXXXXXXXXXXXXTANTSED 55
MA++ EN A ++ L E K + G D+ E+
Sbjct: 120 MAESVENDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEE 179
Query: 56 KSTAELDVEGLTIDESKKVNKFLDEAEDSSIK 87
+ E D +G I SKK+ L + S I+
Sbjct: 180 EDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIE 211
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 346 (126.9 bits), Expect = 3.1e-31, P = 3.1e-31
Identities = 122/392 (31%), Positives = 190/392 (48%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG-SGKTTCFVL 159
+F L LS L K + E + PS IQA ++P +LT AQ G + T +L
Sbjct: 2 SFSALGLSAPLQKAVS-EQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 160 GMLSRVDPNLKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+L++ K+ Q AL + PTRELA Q E + GK+ + S AV P
Sbjct: 61 ELLAK-GHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRS--AVVFGGVPINPQI 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261
+ V++ TPG + + + F++L+ILV DEAD MLD
Sbjct: 118 NKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177
Query: 262 --EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP-DELAKVMVIR 318
+ L+FSATF++ ++ +V ++ V + +VKQ+ CP D+ K ++
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQW--ICPVDKTQKSALLI 235
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
I + E Q ++F RTK+ A+ L K+L I G Q R K + +FK G
Sbjct: 236 QLIKQ--ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGE 293
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+VL++TD+ ARG D Q+ +VN+D P ++ D Y+HRIGR GR G G +
Sbjct: 294 VRVLVATDIAARGLDIDQLPQVVNFDLP-----NVPED---YVHRIGRTGRAGATGQAVS 345
Query: 439 LLMDGDDMIIMEKIERYFDIKVTEVRNSDEDF 470
L+ +++ +++ IER + +V E R E F
Sbjct: 346 LV-SSEEIKLLKDIERLIN-RVLE-RQEVEGF 374
>UNIPROTKB|E9PSX0 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00554119
Ensembl:ENSRNOT00000020984 ArrayExpress:E9PSX0 Uniprot:E9PSX0
Length = 826
Score = 214 (80.4 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 67/206 (32%), Positives = 106/206 (51%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRD 319
++L SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ +
Sbjct: 238 QMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKT 297
Query: 320 R-IFELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGA--TIQEERDKIVKEF 374
+ + EL K+ Q ++F + A L L G+ I G Q +R + +
Sbjct: 298 QHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNGNMNQNQRLDAMAKL 357
Query: 375 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434
K +VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G
Sbjct: 358 KQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLG 409
Query: 435 VVFNLLMDGDDMIIMEKIERYFDIKV 460
+ G++ +M KI + +I +
Sbjct: 410 LTVTYCCRGEEENMMMKIAQKCNINL 435
Score = 209 (78.6 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 69/218 (31%), Positives = 106/218 (48%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKF-LDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
+ TSE AEL+ + E + + L A D TGD FE L LS
Sbjct: 11 STTSESAMAAELEAAPVPAAEPTPASPWNLRTAHDIGGPRTRTGDVVLAEPADFESLLLS 70
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDP 167
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S +
Sbjct: 71 RPVLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILE 127
Query: 168 NLKAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTA 224
N Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K
Sbjct: 128 NYST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKC 181
Query: 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262
+ +G+PG IK+ + L +++ + DEAD +L+E
Sbjct: 182 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 219
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 343 (125.8 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 118/395 (29%), Positives = 188/395 (47%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
T++DL L+ L + E+K++ PSKIQ ++P+ L +++I A GSGKT F L
Sbjct: 62 TWKDLGLNEALCQACD-ELKWKAPSKIQREAIPVALQG--KDVIGLAETGSGKTGAFALP 118
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L + N + AL + PTRELA Q E +G GI +C V + V +
Sbjct: 119 ILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGI--KCCVVVGGMDMVAQGLQL 176
Query: 221 PVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHML--------DEVL------- 264
++I TPG + + + K +K LV DEAD +L D++L
Sbjct: 177 AKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRER 236
Query: 265 ---LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
LFSAT + VK +KD ++ V + ++E ++Q ++ P + V ++
Sbjct: 237 RTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHI-- 294
Query: 322 FELGEKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
L E G + +IF T N+ L+ G + G Q +R + +FK
Sbjct: 295 --LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRS 352
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+LISTDV +RG D V+++VN+D P H K Y+HR+GR R GR G L+
Sbjct: 353 ILISTDVASRGLDIPHVDVVVNFDIPT-HSKD-------YIHRVGRTARAGRSGKAITLV 404
Query: 441 MDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALK 475
D + + ++IE ++T + +ED AL+
Sbjct: 405 SQYD-IELYQRIEHLLGKQLT-LYKCEEDEVMALQ 437
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 119/398 (29%), Positives = 191/398 (47%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+ S F DL L PE+ + L E F+ + IQA+SLP++L +++ QA+ G+GKT
Sbjct: 5 HLSNQKFADLPLHPEVKQAL-AENGFEFCTPIQALSLPVLLQS--KDIAGQAQTGTGKTM 61
Query: 156 CFVLG----MLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
F++ +LS P L P+A+ + PTRELAIQ + + KHT + + +
Sbjct: 62 AFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRL--KVGIVY 119
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSA 268
+Y K ++IGT G I ++ + + ++ +V DEAD M D +
Sbjct: 120 GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDI 179
Query: 269 TFN-ETVKNFVTRIVKDYNQ-LFVKKEELSLESVKQ-YKVYCPDELAKVMVIRDRIF--E 323
F + N R+ ++ L +K +EL+ + + KV E I++ IF
Sbjct: 180 RFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPS 239
Query: 324 LGEKMG------------QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
+KM + I+F TK+S L L+ G+ V + G Q++R +I+
Sbjct: 240 QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
++F G +L++TDV ARG V+ + NYD P DCE Y+HRIGR GR G
Sbjct: 300 EQFTQGQLDILVATDVAARGLHISDVSHVYNYDLP--------DDCEDYVHRIGRTGRAG 351
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
KGV + + + + + IE Y + + V N D D
Sbjct: 352 NKGVSVSFACE-EYALNLPAIETYINHSIP-VSNYDRD 387
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 119/398 (29%), Positives = 191/398 (47%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+ S F DL L PE+ + L E F+ + IQA+SLP++L +++ QA+ G+GKT
Sbjct: 5 HLSNQKFADLPLHPEVKQAL-AENGFEFCTPIQALSLPVLLQS--KDIAGQAQTGTGKTM 61
Query: 156 CFVLG----MLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
F++ +LS P L P+A+ + PTRELAIQ + + KHT + + +
Sbjct: 62 AFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRL--KVGIVY 119
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSA 268
+Y K ++IGT G I ++ + + ++ +V DEAD M D +
Sbjct: 120 GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDI 179
Query: 269 TFN-ETVKNFVTRIVKDYNQ-LFVKKEELSLESVKQ-YKVYCPDELAKVMVIRDRIF--E 323
F + N R+ ++ L +K +EL+ + + KV E I++ IF
Sbjct: 180 RFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPS 239
Query: 324 LGEKMG------------QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371
+KM + I+F TK+S L L+ G+ V + G Q++R +I+
Sbjct: 240 QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299
Query: 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431
++F G +L++TDV ARG V+ + NYD P DCE Y+HRIGR GR G
Sbjct: 300 EQFTQGQLDILVATDVAARGLHISDVSHVYNYDLP--------DDCEDYVHRIGRTGRAG 351
Query: 432 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
KGV + + + + + IE Y + + V N D D
Sbjct: 352 NKGVSVSFACE-EYALNLPAIETYINHSIP-VSNYDRD 387
>MGI|MGI:1858415 [details] [associations]
symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IPI] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1858415 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0000122
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:CH466608 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11218 HOGENOM:HOG000112184 HOVERGEN:HBG051330
KO:K13131 OMA:VEDYEHY OrthoDB:EOG4SF95N EMBL:AJ250027 EMBL:AF220454
EMBL:BC125471 EMBL:BC137721 IPI:IPI00122400 RefSeq:NP_059093.3
UniGene:Mm.272826 ProteinModelPortal:Q9JJY4 SMR:Q9JJY4
IntAct:Q9JJY4 STRING:Q9JJY4 PhosphoSite:Q9JJY4 PaxDb:Q9JJY4
PRIDE:Q9JJY4 Ensembl:ENSMUST00000090680 GeneID:53975 KEGG:mmu:53975
GeneTree:ENSGT00530000062880 InParanoid:Q059Z6 NextBio:310865
Bgee:Q9JJY4 CleanEx:MM_DDX20 Genevestigator:Q9JJY4
GermOnline:ENSMUSG00000027905 Uniprot:Q9JJY4
Length = 825
Score = 226 (84.6 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 67/204 (32%), Positives = 106/204 (51%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRD 319
++L SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ +
Sbjct: 239 QMLAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKT 298
Query: 320 R-IFELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ + EL K+ Q ++F + A L L G+ I G Q +R + + K
Sbjct: 299 QHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQ 358
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G+
Sbjct: 359 FHCRVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLGLT 410
Query: 437 FNLLMDGDDMIIMEKIERYFDIKV 460
G++ +M KI + +I +
Sbjct: 411 VTYCCRGEEENMMMKIAQKCNINL 434
Score = 195 (73.7 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 67/216 (31%), Positives = 102/216 (47%)
Query: 52 TSEDKSTAELDVEGLTIDESKKVNKFLDE-AEDSSIKTVTTGDTPYTSATTFEDLNLSPE 110
TSE AE + E + + A D TGD FE L LS
Sbjct: 14 TSESTMAAERAAAPVQAVEPTPASPWTQRTAHDIGGPRTRTGDVVLAEPADFESLLLSRP 73
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNL 169
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S + N
Sbjct: 74 VLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENY 130
Query: 170 KAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTAQV 226
Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K +
Sbjct: 131 ST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKCHI 184
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262
+G+PG IK+ + L +++ + DEAD +L+E
Sbjct: 185 AVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 220
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 227 (85.0 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 66/223 (29%), Positives = 109/223 (48%)
Query: 243 LGFS-RLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESV 300
LGF+ +LK + + ADH + L+FSAT + + + ++K+ + + + +
Sbjct: 162 LGFAPQLKA-INEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDI 220
Query: 301 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360
Q ++Y D L + R+ E Q IIF T+ L L G+ + G
Sbjct: 221 SQ-RIYLCDHLDHKEALLSRLLS-DESHKQVIIFTATRADTERLAAKLSAQGFATAALSG 278
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 420
Q R++I+ +F G Q+L++TDV +RG D V+L++N+D P K E Y
Sbjct: 279 ELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMP-KFA-------EEY 330
Query: 421 LHRIGRAGRFGRKGVVFNLL--MDGDDMIIMEK-IERYFDIKV 460
+HRIGR GR G KG +L+ D D ++ + + F+I V
Sbjct: 331 VHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEISV 373
Score = 181 (68.8 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 55/166 (33%), Positives = 85/166 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F D +L LL+ L M P+ IQ +LP+ L ++L+A ++ GSGKT F+L
Sbjct: 3 FTDFSLDQRLLQSLK-HMGIATPTAIQEQALPIALAG--KDLMASSKTGSGKTLAFLLPA 59
Query: 162 LSRVDP----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN--YVP 215
L RV + + P+ L + PTRELA Q LR + +T + + ++ N
Sbjct: 60 LQRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
++K P ++ TPG I + K L + L++L+ DEAD MLD
Sbjct: 120 LAKEP----HFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLD 161
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 227 (85.0 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 66/223 (29%), Positives = 109/223 (48%)
Query: 243 LGFS-RLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESV 300
LGF+ +LK + + ADH + L+FSAT + + + ++K+ + + + +
Sbjct: 162 LGFAPQLKA-INEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDI 220
Query: 301 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360
Q ++Y D L + R+ E Q IIF T+ L L G+ + G
Sbjct: 221 SQ-RIYLCDHLDHKEALLSRLLS-DESHKQVIIFTATRADTERLAAKLSAQGFATAALSG 278
Query: 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 420
Q R++I+ +F G Q+L++TDV +RG D V+L++N+D P K E Y
Sbjct: 279 ELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMP-KFA-------EEY 330
Query: 421 LHRIGRAGRFGRKGVVFNLL--MDGDDMIIMEK-IERYFDIKV 460
+HRIGR GR G KG +L+ D D ++ + + F+I V
Sbjct: 331 VHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEISV 373
Score = 181 (68.8 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 55/166 (33%), Positives = 85/166 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F D +L LL+ L M P+ IQ +LP+ L ++L+A ++ GSGKT F+L
Sbjct: 3 FTDFSLDQRLLQSLK-HMGIATPTAIQEQALPIALAG--KDLMASSKTGSGKTLAFLLPA 59
Query: 162 LSRVDP----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN--YVP 215
L RV + + P+ L + PTRELA Q LR + +T + + ++ N
Sbjct: 60 LQRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
++K P ++ TPG I + K L + L++L+ DEAD MLD
Sbjct: 120 LAKEP----HFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLD 161
>UNIPROTKB|H3BN59 [details] [associations]
symbol:H3BN59 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC012184 Ensembl:ENST00000567706 Bgee:H3BN59 Uniprot:H3BN59
Length = 261
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 74/170 (43%), Positives = 111/170 (65%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 143
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 144 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 202
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHML 260
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+
Sbjct: 203 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 238 (88.8 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 332 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 441
Query: 439 LLMDGD 444
G+
Sbjct: 442 FFTPGN 447
Score = 175 (66.7 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 245 LDEADRMLD 253
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 238 (88.8 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 332 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 441
Query: 439 LLMDGD 444
G+
Sbjct: 442 FFTPGN 447
Score = 175 (66.7 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 245 LDEADRMLD 253
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 238 (88.8 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 332 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 441
Query: 439 LLMDGD 444
G+
Sbjct: 442 FFTPGN 447
Score = 175 (66.7 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 245 LDEADRMLD 253
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 232 (86.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 59/186 (31%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ + ELS ++ Q C + K++ +
Sbjct: 275 QTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLM 334
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 335 EEI--MAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGK 392
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 393 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 444
Query: 439 LLMDGD 444
G+
Sbjct: 445 FFTPGN 450
Score = 181 (68.8 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 62/220 (28%), Positives = 101/220 (45%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
T F P+ + + ++ F++P+ IQA P+ L+ R+++ A+ GSGKT ++L
Sbjct: 95 TNFHQAQF-PQYVMDVLLQQNFKEPTAIQAQGFPLALSG--RDMVGIAQTGSGKTLAYLL 151
Query: 160 GMLSRVD--PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV 214
+ ++ P L+ P L + PTRELA Q +V GK + I S C
Sbjct: 152 PAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKG-- 209
Query: 215 PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------- 261
P + ++ I TPG + ++ K R LV DEAD MLD
Sbjct: 210 PQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQ 269
Query: 262 -----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS 296
+ L++SAT+ + V+ ++DY Q+ + ELS
Sbjct: 270 IRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELS 309
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 238 (88.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 351 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 410
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 411 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 468
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 469 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 520
Query: 439 LLMDGD 444
G+
Sbjct: 521 FFTPGN 526
Score = 175 (66.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 149 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 207
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 208 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 265
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 266 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 323
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 324 LDEADRMLD 332
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 238 (88.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 351 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 410
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 411 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 468
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 469 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 520
Query: 439 LLMDGD 444
G+
Sbjct: 521 FFTPGN 526
Score = 175 (66.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 149 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 207
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 208 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 265
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 266 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 323
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 324 LDEADRMLD 332
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 216 (81.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 62/216 (28%), Positives = 104/216 (48%)
Query: 243 LGFSRLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESVK 301
+GFS + + EA +LFSAT + V F ++ D ++ V +
Sbjct: 162 MGFSAVVKAIALEAQGRKQN-MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIH 220
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361
Q+ ++ D+ + + + E + + I+FV+T++ S+L L G + G
Sbjct: 221 QW-IHLADDKDHKFALLCHLLKQ-EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGD 278
Query: 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421
Q++R + + F G VL++TDV ARG D ++ ++N+D P + Y+
Sbjct: 279 MEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMP--------RSADTYI 330
Query: 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 457
HRIGR GR G KG +L + DM I+ KIERY +
Sbjct: 331 HRIGRTGRAGAKGTAISLA-EAHDMRIVGKIERYIE 365
Score = 189 (71.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 58/171 (33%), Positives = 84/171 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
FED L P LL+ L M P+ IQ +LP L R+++A+A G+GKT F+L
Sbjct: 3 FEDFQLDPSLLESLKA-MGHLSPTTIQQETLPHALEQ--RDILARAPTGTGKTASFLLPA 59
Query: 162 LSR-VD-PNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +D P + QA L + PTRELA Q + G+ A+ T Y P
Sbjct: 60 LQHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLN--IAIITGGVPYAPQE 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSA 268
+ +++ TPG + +++ K + IL+ DEAD MLD + FSA
Sbjct: 118 EALKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLD--MGFSA 166
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 216 (81.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 62/216 (28%), Positives = 104/216 (48%)
Query: 243 LGFSRLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESVK 301
+GFS + + EA +LFSAT + V F ++ D ++ V +
Sbjct: 162 MGFSAVVKAIALEAQGRKQN-MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIH 220
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361
Q+ ++ D+ + + + E + + I+FV+T++ S+L L G + G
Sbjct: 221 QW-IHLADDKDHKFALLCHLLKQ-EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGD 278
Query: 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421
Q++R + + F G VL++TDV ARG D ++ ++N+D P + Y+
Sbjct: 279 MEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMP--------RSADTYI 330
Query: 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 457
HRIGR GR G KG +L + DM I+ KIERY +
Sbjct: 331 HRIGRTGRAGAKGTAISLA-EAHDMRIVGKIERYIE 365
Score = 189 (71.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 58/171 (33%), Positives = 84/171 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
FED L P LL+ L M P+ IQ +LP L R+++A+A G+GKT F+L
Sbjct: 3 FEDFQLDPSLLESLKA-MGHLSPTTIQQETLPHALEQ--RDILARAPTGTGKTASFLLPA 59
Query: 162 LSR-VD-PNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +D P + QA L + PTRELA Q + G+ A+ T Y P
Sbjct: 60 LQHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLN--IAIITGGVPYAPQE 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSA 268
+ +++ TPG + +++ K + IL+ DEAD MLD + FSA
Sbjct: 118 EALKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLD--MGFSA 166
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 238 (88.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 353 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 412
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 413 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 470
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 471 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 522
Query: 439 LLMDGD 444
G+
Sbjct: 523 FFTPGN 528
Score = 175 (66.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 151 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 209
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 210 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 267
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 268 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 325
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 326 LDEADRMLD 334
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 238 (88.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 353 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 412
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 413 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 470
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 471 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 522
Query: 439 LLMDGD 444
G+
Sbjct: 523 FFTPGN 528
Score = 175 (66.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 151 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 209
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 210 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 267
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 268 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 325
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 326 LDEADRMLD 334
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 222 (83.2 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 58/191 (30%), Positives = 95/191 (49%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 321
+ L++SAT+ + V+ + D Q+ + EL+ V DE +K RDR+
Sbjct: 307 QTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSK----RDRL 362
Query: 322 FE-----LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ L EK + ++F TK + + L+ G+ I G Q ERD ++ EF+
Sbjct: 363 VKHLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRK 422
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
G T ++++TDV ARG D + + ++NYD P G + E Y+HRIGR GR G G
Sbjct: 423 GKTSIMVATDVAARGIDVKGITHVINYDMP---G-----NIEDYVHRIGRTGRGGASGTA 474
Query: 437 FNLLMDGDDMI 447
+ +G+ +
Sbjct: 475 ISFFTEGNSKL 485
Score = 188 (71.2 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 59/198 (29%), Positives = 93/198 (46%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D + + ++ +++ + TV D P+ TTF++ +L+ + + F KP+ IQ
Sbjct: 97 DVAARSDRDIEQFRKENEMTVKGHDIPHP-ITTFDEAGFPDYVLQEVK-DQGFPKPTPIQ 154
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTREL 183
PM L+ R++I A GSGKT + L + ++ P L+ P L + PTREL
Sbjct: 155 CQGWPMALSG--RDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTREL 212
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A+Q K GK + I + C P + ++ I TPG + + A K
Sbjct: 213 AVQIQTECSKFGKSSRIRNTCVYGGAPKG--PQIRDLARGVEICIATPGRLIDMLEAGKT 270
Query: 244 GFSRLKILVYDEADHMLD 261
R+ LV DEAD MLD
Sbjct: 271 NLKRVTYLVLDEADRMLD 288
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 112/377 (29%), Positives = 182/377 (48%)
Query: 80 EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP 139
E DSS + T TF+DL ++ L + ++ + KP+KIQ ++P+ L
Sbjct: 4 EEHDSSAEAPQTA-VEEEETKTFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQG- 60
Query: 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199
R++I A GSGKT F L +L+ + + AL + PTRELA Q E +G G
Sbjct: 61 -RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 119
Query: 200 ITSECAVPT---DSTNY-VPISKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYD 254
+ +CAV DS + + ++K+P +VI TPG + + + K LK LV D
Sbjct: 120 V--QCAVIVGGIDSMSQSLALAKKP----HIVIATPGRLIDHLENTKGFNLRALKYLVMD 173
Query: 255 EADHML--------DEVL----------LFSATFNETVKNFVTRIVKDYNQLFVKKEELS 296
EAD +L D++L LFSAT + V+ +K+ + V + +
Sbjct: 174 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 233
Query: 297 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYEV 355
+E ++QY ++ P + ++ + L E G + +IF T N+ L++ G+
Sbjct: 234 VEKLQQYYLFIPSKFKDTYLV----YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 289
Query: 356 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP 415
+ G Q +R + +FK +L++TDV +RG D V+++VN+D P H K
Sbjct: 290 IPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPT-HSKD--- 345
Query: 416 DCEVYLHRIGRAGRFGR 432
Y+HR+GR R GR
Sbjct: 346 ----YIHRVGRTARAGR 358
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 339 (124.4 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 108/377 (28%), Positives = 174/377 (46%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
+G P ++F +L+ + + ++ +P+ IQ +P+ ++ R++I A+ G
Sbjct: 244 SGAAPPRPGSSFARFGFDEQLMHQIR-KSEYTQPTPIQCQGVPVAMSG--RDMIGIAKTG 300
Query: 151 SGKTTCFVLGMLSRV--DPNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205
SGKT F+ ML + L+ P A+ +CPTREL Q ++ GK + S A
Sbjct: 301 SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRS-VA 359
Query: 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---- 261
V + + +K A++V+ TPG + + K R+ LV+DEAD M D
Sbjct: 360 VYGGGSMWEQ-AKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFE 418
Query: 262 --------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 307
+ LLFSATF + ++ I+ D ++ + E V Q
Sbjct: 419 YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIF 478
Query: 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 367
P +K + R+ E G ++FV K +A L LK + + + G Q ER
Sbjct: 479 PSGPSKWNWLTRRLVEFTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSER 537
Query: 368 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427
+K++ EFK +L++TDV ARG D + ++NYD + D + + HRIGR
Sbjct: 538 NKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYD--------VARDIDTHTHRIGRT 589
Query: 428 GRFGRKGVVFNLLMDGD 444
GR G KGV + LL D
Sbjct: 590 GRAGEKGVAYTLLTPKD 606
Score = 40 (19.1 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 54 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIK 87
E++ E D +G I SKK+ L + S I+
Sbjct: 176 EEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIE 209
>UNIPROTKB|H3BMQ5 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC012184 HGNC:HGNC:2742 ChiTaRS:DDX19B
Ensembl:ENST00000566216 Bgee:H3BMQ5 Uniprot:H3BMQ5
Length = 233
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 73/167 (43%), Positives = 109/167 (65%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 72 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 130
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 131 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 189
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEAD 257
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD
Sbjct: 190 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 232
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 211 (79.3 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 58/219 (26%), Positives = 105/219 (47%)
Query: 243 LGFSRLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESVK 301
LGF++ +++ A H + L+FSAT + V + ++ + ++ + + +
Sbjct: 166 LGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDIT 225
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361
Q+ C D L + DRI E Q IIF T+ L + L + + G
Sbjct: 226 QHFYLC-DHLDHKEALLDRILADAEYR-QVIIFTATRADTDRLTEKLNQNNLKAVALSGN 283
Query: 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421
Q +R+ I+ +F+ + ++L++TDV +RG D V ++N+D P KH E Y+
Sbjct: 284 LNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMP----KHTEE----YV 335
Query: 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 460
HR+GR GR G KG +L+ D +++E + ++
Sbjct: 336 HRVGRTGRAGNKGDAMSLV-GPKDWESFKRVEAFLQQEI 373
Score = 194 (73.4 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 59/168 (35%), Positives = 85/168 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S F+DL L LLK L F++ ++IQ ++P LT R+L+A ++ GSGKT F
Sbjct: 3 STLQFKDLGLDNRLLKNL-AHYNFKQATEIQQQAIP--LTIAGRDLLASSKTGSGKTLAF 59
Query: 158 VLGMLSRVDP----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
VL ML + + K P+ L + PTRELA Q LR M G++ + T N+
Sbjct: 60 VLPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSM--LGGLSYTATLITGGENF 117
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
K + ++ TPG + + + L L+ LV DEAD MLD
Sbjct: 118 NDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLD 165
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 211 (79.3 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 58/219 (26%), Positives = 105/219 (47%)
Query: 243 LGFSRLKILVYDEADHMLDEVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEELSLESVK 301
LGF++ +++ A H + L+FSAT + V + ++ + ++ + + +
Sbjct: 166 LGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDIT 225
Query: 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361
Q+ C D L + DRI E Q IIF T+ L + L + + G
Sbjct: 226 QHFYLC-DHLDHKEALLDRILADAEYR-QVIIFTATRADTDRLTEKLNQNNLKAVALSGN 283
Query: 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421
Q +R+ I+ +F+ + ++L++TDV +RG D V ++N+D P KH E Y+
Sbjct: 284 LNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMP----KHTEE----YV 335
Query: 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 460
HR+GR GR G KG +L+ D +++E + ++
Sbjct: 336 HRVGRTGRAGNKGDAMSLV-GPKDWESFKRVEAFLQQEI 373
Score = 194 (73.4 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 59/168 (35%), Positives = 85/168 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S F+DL L LLK L F++ ++IQ ++P LT R+L+A ++ GSGKT F
Sbjct: 3 STLQFKDLGLDNRLLKNL-AHYNFKQATEIQQQAIP--LTIAGRDLLASSKTGSGKTLAF 59
Query: 158 VLGMLSRVDP----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
VL ML + + K P+ L + PTRELA Q LR M G++ + T N+
Sbjct: 60 VLPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSM--LGGLSYTATLITGGENF 117
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
K + ++ TPG + + + L L+ LV DEAD MLD
Sbjct: 118 NDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLD 165
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 227 (85.0 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
Identities = 58/180 (32%), Positives = 89/180 (49%)
Query: 265 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 324
LFSAT ++V+ I+ D ++ + ++ + E+VKQ V+ E K++ +R E
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAE- 377
Query: 325 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 384
+IFV++K A L+ LK I ER+ V +F+ G VLI+
Sbjct: 378 -SLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIA 436
Query: 385 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444
TDV+ARG D + +N ++NYD P Y+HRIGR+GR GR G + D
Sbjct: 437 TDVIARGMDFKGINCVINYDFP--------DSASAYIHRIGRSGRAGRSGEAITFYTEQD 488
Score = 168 (64.2 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
Identities = 50/157 (31%), Positives = 84/157 (53%)
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNL 169
+L+ L E+ F++P+ IQ ++P++L+ R A A GSGKT F+ ML ++ P+
Sbjct: 152 ILRNL-AELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKLKRPST 208
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV-PTDSTNYVPISKRPPVTAQVVI 228
+A+ + P RELA Q +K+ K + P T SK + V+I
Sbjct: 209 DGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKT--ADFSK---LWCDVLI 263
Query: 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLL 265
TP +K+ + AKK+ S+++ LV DE+D + ++ LL
Sbjct: 264 STPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLL 300
Score = 49 (22.3 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 69 DESKKVNKFLDEAEDS 84
D +KKVN F++E ED+
Sbjct: 34 DSNKKVNFFVEEEEDT 49
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 233 (87.1 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 61/188 (32%), Positives = 95/188 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 332 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 379 TQVLISTDVLARG--FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+LI+TDV +RG FD + V ++NYD P E Y+HRIGR R KG
Sbjct: 390 APILIATDVASRGLGFDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTA 441
Query: 437 FNLLMDGD 444
+ G+
Sbjct: 442 YTFFTPGN 449
Score = 175 (66.7 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 55/189 (29%), Positives = 86/189 (45%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLD 261
DEAD MLD
Sbjct: 245 LDEADRMLD 253
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 109/393 (27%), Positives = 188/393 (47%)
Query: 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158
A +F+DL ++ L + ++ ++ P+KIQ ++P+ L R++I A GSGKT F
Sbjct: 24 ARSFKDLGVTDVLCEACD-QLGWKVPTKIQVEAIPVALQG--RDIIGLAETGSGKTGAFA 80
Query: 159 LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNY-VPI 216
L +L + + AL + PTRELA Q E +G G+ S V DS + + +
Sbjct: 81 LPILQALLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLAL 140
Query: 217 SKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHML--------DEVL--- 264
+K+P ++I TPG + + + K LK LV DEAD +L D++L
Sbjct: 141 AKKP----HIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVI 196
Query: 265 -------LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317
LFSAT + V+ +K+ + V + ++E ++QY ++ P + ++
Sbjct: 197 PRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLV 256
Query: 318 RDRIFELGEKMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376
+ L E G + +IF T N+ L++ G+ + G Q +R + +FK
Sbjct: 257 ----YILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKA 312
Query: 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436
+L++TDV +RG D V++++N+D P H K Y+HR+GR R GR G
Sbjct: 313 KARSILLATDVASRGLDIPHVDVVINFDIPT-HSKD-------YIHRVGRTARAGRSGKS 364
Query: 437 FNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469
+ D + + ++IE K+ +E+
Sbjct: 365 ITFVTQYD-VELFQRIEHLIGKKLPAFPMQEEE 396
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 109/374 (29%), Positives = 182/374 (48%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG-SGKTTCFVLG 160
F L LS +LK + E + PS IQ ++P +L AQ G + T +L
Sbjct: 3 FTSLGLSAPILKAIE-EKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 161 MLSRVDPNLKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218
+L++ P ++A Q AL + PTRELA Q + + G+H + S AV P +
Sbjct: 62 LLAK-GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS--AVVFGGVKINPQMQ 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
R A +++ TPG + + + F +L+ILV DEAD MLD
Sbjct: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSATF+ ++ +V + ++ V + +V+Q +Y P ++ K + +
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IY-PADVKKKPDMLVK 236
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ + G Q ++F+RTK+ A+ L L + G I G Q R + + +FK G +
Sbjct: 237 LVKEGNWQ-QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++TD+ ARG D Q+ +VN++ P E Y+HRIGR GR G G +L+
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELP--------KIAEDYVHRIGRTGRAGEVGKAISLV 347
Query: 441 --MDGDDMIIMEKI 452
++ ++ +E++
Sbjct: 348 SAIEAPELFAIERL 361
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 109/374 (29%), Positives = 182/374 (48%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG-SGKTTCFVLG 160
F L LS +LK + E + PS IQ ++P +L AQ G + T +L
Sbjct: 3 FTSLGLSAPILKAIE-EKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 161 MLSRVDPNLKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218
+L++ P ++A Q AL + PTRELA Q + + G+H + S AV P +
Sbjct: 62 LLAK-GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS--AVVFGGVKINPQMQ 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261
R A +++ TPG + + + F +L+ILV DEAD MLD
Sbjct: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
Query: 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320
+ LLFSATF+ ++ +V + ++ V + +V+Q +Y P ++ K + +
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IY-PADVKKKPDMLVK 236
Query: 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380
+ + G Q ++F+RTK+ A+ L L + G I G Q R + + +FK G +
Sbjct: 237 LVKEGNWQ-QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 440
+L++TD+ ARG D Q+ +VN++ P E Y+HRIGR GR G G +L+
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELP--------KIAEDYVHRIGRTGRAGEVGKAISLV 347
Query: 441 --MDGDDMIIMEKI 452
++ ++ +E++
Sbjct: 348 SAIEAPELFAIERL 361
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 221 (82.9 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 57/176 (32%), Positives = 89/176 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--DELAKVMVIRD 319
+ +LFSATF ++ + +Y L V + S + + Q + D+ + +M +
Sbjct: 340 QTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLH 399
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379
E +K T++FV TK A L L + T+I G Q+ER+ ++ FK G T
Sbjct: 400 AQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRT 459
Query: 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 435
+L++TDV ARG D V +VN+D P D + Y+HRIGR GR G+ G+
Sbjct: 460 PILVATDVAARGLDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAGKSGI 507
Score = 186 (70.5 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 60/213 (28%), Positives = 103/213 (48%)
Query: 59 AELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVE 118
AEL+ T E+ +N D ED ++T + GD P TF D++L L +
Sbjct: 115 AELEPV-FTEQENTGIN--FDAYEDIPVET-SGGDVP-PPVNTFADIDLGDALNLNIR-R 168
Query: 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQ--- 173
K+ +P+ +Q ++P++L R+L+A A+ GSGKT F ++S + D +++ P+
Sbjct: 169 CKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSR 226
Query: 174 -----ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVI 228
A+ + PTRELA Q + +K TG+ + V T + +++
Sbjct: 227 AVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGTPIHQQLRELERGCDILV 284
Query: 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
TPG + + ++ ++ L DEAD MLD
Sbjct: 285 ATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 209 (78.6 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 59/186 (31%), Positives = 102/186 (54%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKK-EELSL-ESVKQYKVYCPDELAKVMVIRD 319
+ L+++AT+ + V+ + ++ + Q+ + + +EL+ +++ QY P ++ K + +
Sbjct: 614 QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVP-QMEKERRL-E 671
Query: 320 RIFELGEKMGQTIIFVRTKNSASALHKAL-KDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+I E+ + IIF TK L +++ + FG V I G Q ERD ++ +F+ G
Sbjct: 672 QILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVV--IHGDKTQGERDWVLNQFRSGK 729
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+ VLI+TDV ARG D + + +++NYD P G E Y+HRIGR GR G GV F
Sbjct: 730 SCVLIATDVAARGLDIKDIRVVINYDFPT--G------VEDYVHRIGRTGRAGATGVAFT 781
Query: 439 LLMDGD 444
+ D
Sbjct: 782 FFTEQD 787
Score = 206 (77.6 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 60/180 (33%), Positives = 87/180 (48%)
Query: 87 KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQ 146
+ TTG+ TFE L PE+L+ L + F P+ IQA + P+ L R+++A
Sbjct: 422 EVTTTGENIPAPYITFESSGLPPEILREL-LSAGFPSPTPIQAQTWPIALQS--RDIVAI 478
Query: 147 ARNGSGKTT-----CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
A+ GSGKT F+L R D P L + PTRELA Q + + G+ + I+
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
C P K A +V+ TPG + + K + F ++ +LV DEAD MLD
Sbjct: 538 CTCLYGGAPKG--PQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 229 (85.7 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
Identities = 63/187 (33%), Positives = 94/187 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC--PDELAKVMVIRD 319
+ LLFSATF ++ + +Y L V + S + + Q + D+ + +M +
Sbjct: 348 QTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLH 407
Query: 320 RIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377
E G K T++FV TK A +L L G+ T+I G Q+ER+ +K FK G
Sbjct: 408 AQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSG 467
Query: 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437
T +L++TDV ARG D V +VN+D P D + Y+HRIGR GR G+ G+
Sbjct: 468 RTPILVATDVAARGLDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAGKSGLAT 519
Query: 438 NLLMDGD 444
DG+
Sbjct: 520 AFFNDGN 526
Score = 176 (67.0 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
Identities = 56/203 (27%), Positives = 97/203 (47%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
++ V F D ED I+T +GD TF +++L L + K+ KP+ +Q
Sbjct: 131 EQDNTVINF-DAYEDIPIET--SGDNVPPPVNTFAEIDLGEALNLNIR-RCKYVKPTPVQ 186
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQ--------ALCIC 178
++P++L R+L+A A+ GSGKT F ++S + D +++ P+ A+ +
Sbjct: 187 RHAIPILLEG--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILS 244
Query: 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 238
PTRELA Q + +K TG+ + V T + +++ TPG + +
Sbjct: 245 PTRELASQIHDEAKKFSYQTGV--KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL 302
Query: 239 SAKKLGFSRLKILVYDEADHMLD 261
++ ++ L DEAD MLD
Sbjct: 303 ERARVSMQMIRFLALDEADRMLD 325
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 234 (87.4 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 318
+ L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 329
Query: 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 330 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 387
Query: 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 388 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 439
Query: 439 LLMDGD 444
G+
Sbjct: 440 FFTPGN 445
Score = 165 (63.1 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 48/158 (30%), Positives = 76/158 (48%)
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-- 166
P+ + ++ F +P+ IQ P+ L+ R+++ A+ GSGKT ++L + ++
Sbjct: 98 PQYVMDALMDQNFTEPTPIQCQGFPLALSG--RDMVGIAQTGSGKTLAYLLPAIVHINHQ 155
Query: 167 PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT 223
P L+ P L + PTRELA Q +V GK + + S C P +
Sbjct: 156 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKG--PQIRDLERG 213
Query: 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
++ I TPG + ++ A K R LV DEAD MLD
Sbjct: 214 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 251
Score = 37 (18.1 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 104 DLNLSPELLKGLYVE 118
DLN P+ K YVE
Sbjct: 42 DLNELPKFEKNFYVE 56
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 228 (85.3 bits), Expect = 9.8e-30, Sum P(2) = 9.8e-30
Identities = 63/203 (31%), Positives = 96/203 (47%)
Query: 249 KILV-YDEADHMLDEVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 307
K+L ++ H + ++F+AT V+ ++ +++ E V+Q KV+
Sbjct: 586 KMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ-KVFL 644
Query: 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 367
E K + I E G IIFV K L K+L+ GY T+ G QE+R
Sbjct: 645 MSESEKRKKLL-AILEQGFDP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 702
Query: 368 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427
+ + K G +L++TDV RG D Q V+++VNYD K++E Y+HRIGR
Sbjct: 703 EFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM----AKNIED----YIHRIGRT 754
Query: 428 GRFGRKGVVFNLLMDGDDMIIME 450
GR G+ GV L D + E
Sbjct: 755 GRAGKSGVAITFLTKEDSAVFYE 777
Score = 180 (68.4 bits), Expect = 9.8e-30, Sum P(2) = 9.8e-30
Identities = 59/189 (31%), Positives = 95/189 (50%)
Query: 82 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR 141
ED SI T G P +++D +L P +L+ + + +++P+ IQ ++P+ L R
Sbjct: 374 EDYSI-TTKGGKIP-NPIRSWKDSSLPPHILE-VIDKCGYKEPTPIQRQAIPIGLQN--R 428
Query: 142 NLIAQARNGSGKTTCFVLGML---------SRVDPNLKAPQALCICPTRELAIQNLEVLR 192
++I A GSGKT F++ +L R++ + + P A+ + PTRELA Q E
Sbjct: 429 DIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETI 488
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
K GK GI + + S R + ++VI TPG + + + L SR +V
Sbjct: 489 KFGKPLGIRTVAVIGGISREDQGFRLR--MGCEIVIATPGRLIDVLENRYLVLSRCTYVV 546
Query: 253 YDEADHMLD 261
DEAD M+D
Sbjct: 547 LDEADRMID 555
WARNING: HSPs involving 624 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 480 462 0.00096 118 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 874
No. of states in DFA: 611 (65 KB)
Total size of DFA: 252 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.08u 0.17s 43.25t Elapsed: 00:00:02
Total cpu time: 43.15u 0.18s 43.33t Elapsed: 00:00:02
Start: Sat May 11 05:30:53 2013 End: Sat May 11 05:30:55 2013
WARNINGS ISSUED: 2