Query 011667
Match_columns 480
No_of_seqs 294 out of 2596
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 6.8E-73 1.5E-77 509.9 25.3 351 97-464 58-427 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.6E-70 3.5E-75 527.2 30.7 357 100-471 91-475 (519)
3 KOG0338 ATP-dependent RNA heli 100.0 2.4E-70 5.3E-75 508.3 21.6 341 99-455 180-544 (691)
4 KOG0328 Predicted ATP-dependen 100.0 9.4E-69 2E-73 463.2 26.2 356 96-467 23-396 (400)
5 KOG0332 ATP-dependent RNA heli 100.0 2.2E-68 4.7E-73 478.0 27.7 381 84-475 75-476 (477)
6 COG0513 SrmB Superfamily II DN 100.0 1.2E-66 2.6E-71 522.8 33.4 347 100-461 29-398 (513)
7 KOG0333 U5 snRNP-like RNA heli 100.0 9E-66 2E-70 479.6 28.3 371 86-472 231-653 (673)
8 KOG0340 ATP-dependent RNA heli 100.0 7E-65 1.5E-69 452.8 23.9 356 98-468 5-385 (442)
9 KOG0326 ATP-dependent RNA heli 100.0 2.3E-64 5E-69 443.1 20.6 354 97-468 82-453 (459)
10 KOG0343 RNA Helicase [RNA proc 100.0 7.1E-64 1.5E-68 469.3 24.9 350 98-465 67-443 (758)
11 PRK04837 ATP-dependent RNA hel 100.0 2.1E-62 4.4E-67 487.4 35.0 357 98-471 6-389 (423)
12 PTZ00110 helicase; Provisional 100.0 6.1E-63 1.3E-67 500.9 31.6 367 91-472 121-512 (545)
13 KOG0342 ATP-dependent RNA heli 100.0 4.6E-63 9.9E-68 459.4 25.9 350 96-464 78-454 (543)
14 KOG0348 ATP-dependent RNA heli 100.0 1.1E-62 2.5E-67 459.7 27.6 347 96-456 132-566 (708)
15 KOG0347 RNA helicase [RNA proc 100.0 3.8E-63 8.3E-68 464.3 19.8 347 95-458 176-584 (731)
16 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-61 4.7E-66 488.4 34.1 365 90-469 111-500 (518)
17 PRK11776 ATP-dependent RNA hel 100.0 1.2E-60 2.7E-65 479.7 34.0 347 99-463 3-368 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 1.6E-60 3.4E-65 487.0 35.1 349 99-464 5-372 (629)
19 KOG0345 ATP-dependent RNA heli 100.0 5.3E-61 1.1E-65 442.7 28.4 336 99-450 3-370 (567)
20 PRK10590 ATP-dependent RNA hel 100.0 2.6E-60 5.7E-65 475.2 33.2 347 101-464 2-372 (456)
21 KOG0336 ATP-dependent RNA heli 100.0 3.9E-61 8.3E-66 435.8 23.3 356 98-470 217-598 (629)
22 PRK04537 ATP-dependent RNA hel 100.0 8.6E-60 1.9E-64 479.3 34.3 349 99-464 8-384 (572)
23 KOG0339 ATP-dependent RNA heli 100.0 2.2E-60 4.8E-65 441.5 26.7 366 90-470 213-601 (731)
24 KOG0341 DEAD-box protein abstr 100.0 3E-62 6.5E-67 440.2 12.0 366 86-468 156-553 (610)
25 KOG0335 ATP-dependent RNA heli 100.0 3.6E-60 7.8E-65 447.8 26.7 369 86-469 60-469 (482)
26 PRK11192 ATP-dependent RNA hel 100.0 2.5E-59 5.4E-64 467.6 33.9 348 100-463 1-371 (434)
27 PRK01297 ATP-dependent RNA hel 100.0 1.2E-57 2.7E-62 459.1 34.4 349 97-461 84-459 (475)
28 PTZ00424 helicase 45; Provisio 100.0 3E-57 6.5E-62 449.6 34.6 352 99-466 27-396 (401)
29 KOG0327 Translation initiation 100.0 6.7E-58 1.5E-62 414.1 24.0 352 99-468 25-394 (397)
30 KOG0346 RNA helicase [RNA proc 100.0 4.7E-58 1E-62 419.5 23.0 345 99-457 18-423 (569)
31 KOG0350 DEAD-box ATP-dependent 100.0 6.4E-57 1.4E-61 418.3 23.1 352 100-464 127-564 (620)
32 KOG0334 RNA helicase [RNA proc 100.0 2.8E-56 6.1E-61 449.8 26.7 359 91-464 356-740 (997)
33 KOG0344 ATP-dependent RNA heli 100.0 9.8E-55 2.1E-59 413.3 23.7 363 87-464 119-515 (593)
34 KOG4284 DEAD box protein [Tran 100.0 1.4E-53 3E-58 406.4 21.8 337 93-445 18-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 5.7E-52 1.2E-56 432.3 30.9 335 106-463 20-407 (742)
36 KOG0337 ATP-dependent RNA heli 100.0 1.2E-52 2.6E-57 382.3 18.6 349 99-463 20-387 (529)
37 PLN03137 ATP-dependent DNA hel 100.0 1.8E-49 3.9E-54 410.6 27.4 320 101-444 436-788 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 4.1E-49 8.9E-54 395.6 25.6 304 115-444 3-334 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.9E-47 4.2E-52 393.0 26.8 311 106-444 8-344 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 2.8E-46 6E-51 386.0 24.9 306 113-444 3-332 (591)
41 PRK02362 ski2-like helicase; P 100.0 7.4E-46 1.6E-50 390.9 27.1 339 101-463 2-415 (737)
42 KOG0329 ATP-dependent RNA heli 100.0 4.4E-47 9.5E-52 324.2 14.1 317 99-466 41-378 (387)
43 PRK13767 ATP-dependent helicas 100.0 1.5E-45 3.3E-50 391.7 27.4 342 107-463 18-419 (876)
44 TIGR00580 mfd transcription-re 100.0 1.6E-44 3.4E-49 379.7 29.3 316 105-443 434-770 (926)
45 PRK00254 ski2-like helicase; P 100.0 4.4E-44 9.5E-49 376.5 28.8 322 101-443 2-388 (720)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-43 2.4E-48 362.8 27.9 304 113-441 6-389 (844)
47 PRK10917 ATP-dependent DNA hel 100.0 4.7E-43 1E-47 364.3 29.2 314 108-443 247-589 (681)
48 PRK10689 transcription-repair 100.0 7.3E-43 1.6E-47 374.7 30.0 347 105-479 583-952 (1147)
49 PRK01172 ski2-like helicase; P 100.0 3.5E-43 7.7E-48 368.2 26.7 333 101-456 2-388 (674)
50 TIGR00643 recG ATP-dependent D 100.0 1.5E-42 3.3E-47 358.3 28.4 313 109-443 222-566 (630)
51 PRK09401 reverse gyrase; Revie 100.0 2.6E-42 5.6E-47 371.3 28.7 342 111-477 69-583 (1176)
52 COG1201 Lhr Lhr-like helicases 100.0 3.3E-42 7.1E-47 350.1 24.4 318 106-442 7-361 (814)
53 PHA02653 RNA helicase NPH-II; 100.0 2.1E-41 4.5E-46 344.6 28.7 309 125-453 166-523 (675)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-41 6E-46 351.8 29.7 313 141-478 18-365 (819)
55 COG0514 RecQ Superfamily II DN 100.0 5.5E-42 1.2E-46 336.4 22.4 310 112-446 6-340 (590)
56 PRK11664 ATP-dependent RNA hel 100.0 1.2E-40 2.5E-45 348.0 29.3 290 133-443 15-339 (812)
57 PRK12898 secA preprotein trans 100.0 5.6E-41 1.2E-45 335.9 25.5 307 114-445 95-588 (656)
58 KOG0349 Putative DEAD-box RNA 100.0 7.5E-41 1.6E-45 306.1 18.5 284 171-466 286-669 (725)
59 PRK09751 putative ATP-dependen 100.0 3.9E-40 8.4E-45 355.3 26.1 305 145-464 1-407 (1490)
60 COG1111 MPH1 ERCC4-like helica 100.0 4.9E-40 1.1E-44 308.5 22.6 306 120-443 12-481 (542)
61 PRK09200 preprotein translocas 100.0 7.1E-40 1.5E-44 334.9 25.3 308 113-445 69-543 (790)
62 PRK14701 reverse gyrase; Provi 100.0 1.9E-39 4.1E-44 356.1 28.3 346 109-477 66-559 (1638)
63 TIGR03714 secA2 accessory Sec 100.0 2E-39 4.4E-44 328.3 26.1 307 117-445 65-539 (762)
64 TIGR01054 rgy reverse gyrase. 100.0 5.3E-39 1.1E-43 346.3 28.4 343 109-477 65-580 (1171)
65 TIGR00963 secA preprotein tran 100.0 6.3E-39 1.4E-43 322.7 26.2 307 113-445 47-519 (745)
66 COG1202 Superfamily II helicas 100.0 6.1E-38 1.3E-42 296.5 25.4 361 99-478 193-597 (830)
67 PHA02558 uvsW UvsW helicase; P 100.0 2.3E-38 5E-43 319.4 23.7 288 122-434 113-443 (501)
68 TIGR01587 cas3_core CRISPR-ass 100.0 3.3E-38 7.1E-43 308.1 21.1 285 142-443 1-336 (358)
69 COG1204 Superfamily II helicas 100.0 3E-36 6.5E-41 311.0 26.3 325 106-445 15-410 (766)
70 KOG0352 ATP-dependent DNA heli 100.0 1.5E-36 3.2E-41 277.6 15.5 310 110-444 6-363 (641)
71 KOG0354 DEAD-box like helicase 100.0 1.4E-35 3E-40 294.6 23.3 304 120-441 59-527 (746)
72 PRK11131 ATP-dependent RNA hel 100.0 6.6E-35 1.4E-39 309.7 29.1 279 141-443 90-411 (1294)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 5.2E-35 1.1E-39 282.4 23.0 279 127-428 1-357 (357)
74 KOG0351 ATP-dependent DNA heli 100.0 2.4E-35 5.2E-40 306.2 21.6 314 108-444 249-593 (941)
75 PRK13766 Hef nuclease; Provisi 100.0 9.2E-35 2E-39 310.5 26.5 308 120-444 12-480 (773)
76 TIGR00603 rad25 DNA repair hel 100.0 1.7E-34 3.8E-39 292.7 23.9 308 123-456 255-621 (732)
77 COG1205 Distinct helicase fami 100.0 8.7E-34 1.9E-38 296.8 23.3 333 109-457 57-437 (851)
78 KOG0353 ATP-dependent DNA heli 100.0 2.9E-34 6.2E-39 259.1 16.6 319 103-443 74-467 (695)
79 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.7E-33 1.2E-37 296.1 25.5 283 141-443 83-404 (1283)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 1.9E-33 4.2E-38 282.6 20.1 315 119-444 106-491 (1230)
81 PRK13104 secA preprotein trans 100.0 1.1E-31 2.3E-36 274.2 25.6 302 119-445 79-589 (896)
82 PRK04914 ATP-dependent helicas 100.0 8.6E-31 1.9E-35 274.9 29.2 319 123-458 152-617 (956)
83 COG1200 RecG RecG-like helicas 100.0 4.3E-31 9.2E-36 259.0 23.0 319 104-444 244-592 (677)
84 PRK05580 primosome assembly pr 100.0 5.4E-31 1.2E-35 273.0 24.8 307 123-444 144-550 (679)
85 KOG0948 Nuclear exosomal RNA h 100.0 2.2E-30 4.8E-35 251.8 24.4 308 119-449 126-545 (1041)
86 PRK12906 secA preprotein trans 100.0 1.9E-30 4E-35 264.0 24.7 308 113-445 71-555 (796)
87 PRK12904 preprotein translocas 100.0 2.8E-30 6E-35 263.8 24.9 306 114-445 73-575 (830)
88 KOG0926 DEAH-box RNA helicase 100.0 3.8E-30 8.2E-35 251.7 22.0 328 130-479 263-735 (1172)
89 PRK12899 secA preprotein trans 100.0 1.1E-29 2.3E-34 259.0 24.7 151 102-261 64-229 (970)
90 COG1061 SSL2 DNA or RNA helica 100.0 4.2E-30 9E-35 254.3 21.1 279 123-429 36-375 (442)
91 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-30 7.6E-35 262.3 19.8 318 106-437 295-696 (1674)
92 PRK09694 helicase Cas3; Provis 100.0 1.7E-29 3.7E-34 263.6 24.5 299 119-432 282-664 (878)
93 TIGR00595 priA primosomal prot 100.0 2.9E-30 6.3E-35 258.3 17.8 287 144-445 1-383 (505)
94 KOG0922 DEAH-box RNA helicase 100.0 3E-29 6.6E-34 243.5 22.1 314 141-479 67-420 (674)
95 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-28 2.8E-33 245.4 26.3 305 118-443 293-723 (1248)
96 PRK13107 preprotein translocas 100.0 5.2E-29 1.1E-33 253.8 23.6 302 119-445 79-593 (908)
97 COG1197 Mfd Transcription-repa 100.0 1.8E-28 3.9E-33 253.5 25.9 348 104-479 576-946 (1139)
98 COG1643 HrpA HrpA-like helicas 100.0 1.1E-28 2.3E-33 253.7 23.5 314 141-479 66-417 (845)
99 KOG0923 mRNA splicing factor A 100.0 3.8E-28 8.2E-33 233.6 19.4 324 129-479 271-637 (902)
100 cd00268 DEADc DEAD-box helicas 100.0 3.4E-28 7.3E-33 218.2 15.7 182 102-288 1-202 (203)
101 PRK11448 hsdR type I restricti 99.9 7.2E-27 1.6E-31 250.9 20.9 290 123-431 413-801 (1123)
102 KOG0924 mRNA splicing factor A 99.9 2.8E-26 6.2E-31 221.3 18.1 315 141-479 372-728 (1042)
103 COG4581 Superfamily II RNA hel 99.9 8.6E-26 1.9E-30 233.8 23.0 307 118-441 115-535 (1041)
104 COG4098 comFA Superfamily II D 99.9 4.9E-25 1.1E-29 197.3 23.5 298 123-452 97-424 (441)
105 KOG0950 DNA polymerase theta/e 99.9 5.3E-26 1.1E-30 228.3 18.1 323 106-445 206-613 (1008)
106 PLN03142 Probable chromatin-re 99.9 1.7E-25 3.7E-30 235.9 20.8 317 123-453 169-610 (1033)
107 PRK12900 secA preprotein trans 99.9 6E-25 1.3E-29 225.1 18.5 127 309-445 579-713 (1025)
108 COG1110 Reverse gyrase [DNA re 99.9 8.8E-24 1.9E-28 213.5 22.4 274 111-407 71-417 (1187)
109 TIGR01407 dinG_rel DnaQ family 99.9 6.9E-23 1.5E-27 219.2 27.9 127 327-457 673-829 (850)
110 COG1203 CRISPR-associated heli 99.9 8.2E-24 1.8E-28 221.7 20.0 308 123-443 195-550 (733)
111 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-24 3.2E-29 188.8 10.0 148 125-276 1-168 (169)
112 TIGR00631 uvrb excinuclease AB 99.9 1.4E-22 3E-27 207.8 25.8 130 310-443 424-553 (655)
113 KOG0920 ATP-dependent RNA heli 99.9 1.9E-23 4.1E-28 214.2 19.2 304 125-443 175-544 (924)
114 COG0556 UvrB Helicase subunit 99.9 6E-23 1.3E-27 194.2 19.7 131 308-443 426-556 (663)
115 PRK12326 preprotein translocas 99.9 2E-22 4.2E-27 201.3 20.9 306 114-445 70-549 (764)
116 PRK05298 excinuclease ABC subu 99.9 1.4E-21 3E-26 202.1 26.6 150 311-464 429-586 (652)
117 KOG0385 Chromatin remodeling c 99.9 1.2E-22 2.6E-27 199.1 14.0 314 123-454 167-611 (971)
118 KOG0925 mRNA splicing factor A 99.9 3.2E-22 7E-27 186.8 15.9 321 96-443 21-387 (699)
119 KOG0387 Transcription-coupled 99.9 5.7E-21 1.2E-25 188.3 22.8 317 105-444 196-659 (923)
120 PRK13103 secA preprotein trans 99.9 3.2E-21 7E-26 197.3 20.7 301 119-445 79-593 (913)
121 COG1198 PriA Primosomal protei 99.9 3.3E-21 7.1E-26 195.9 18.9 307 123-444 198-604 (730)
122 COG4096 HsdR Type I site-speci 99.9 3.2E-21 6.9E-26 192.3 16.3 286 122-430 164-525 (875)
123 TIGR00348 hsdR type I site-spe 99.9 7.9E-21 1.7E-25 197.3 19.8 288 124-430 239-634 (667)
124 PRK12903 secA preprotein trans 99.9 5.2E-20 1.1E-24 186.6 21.6 306 114-445 70-541 (925)
125 PRK07246 bifunctional ATP-depe 99.8 3.1E-19 6.8E-24 188.5 26.2 157 316-475 635-816 (820)
126 CHL00122 secA preprotein trans 99.8 5.5E-19 1.2E-23 180.3 25.6 264 113-395 67-491 (870)
127 KOG1123 RNA polymerase II tran 99.8 7.1E-20 1.5E-24 171.8 16.8 327 99-456 281-667 (776)
128 KOG0384 Chromodomain-helicase 99.8 1.5E-20 3.3E-25 193.0 12.8 320 122-456 369-825 (1373)
129 KOG0949 Predicted helicase, DE 99.8 2.4E-19 5.3E-24 180.0 19.2 143 123-272 511-673 (1330)
130 PRK08074 bifunctional ATP-depe 99.8 9.9E-19 2.1E-23 188.1 20.3 158 316-474 739-924 (928)
131 TIGR03117 cas_csf4 CRISPR-asso 99.8 8.2E-18 1.8E-22 170.0 23.7 113 327-441 469-614 (636)
132 PRK12902 secA preprotein trans 99.8 1.1E-17 2.3E-22 170.6 24.4 261 118-395 81-506 (939)
133 cd00079 HELICc Helicase superf 99.8 1.4E-18 3E-23 144.1 14.8 120 312-439 12-131 (131)
134 KOG0390 DNA repair protein, SN 99.8 5.3E-18 1.1E-22 171.6 21.7 303 123-443 238-707 (776)
135 COG4889 Predicted helicase [Ge 99.8 1.6E-19 3.5E-24 179.2 10.0 326 99-440 139-585 (1518)
136 KOG1000 Chromatin remodeling p 99.8 5.6E-17 1.2E-21 152.4 23.0 312 124-457 199-618 (689)
137 KOG4150 Predicted ATP-dependen 99.8 1.3E-18 2.9E-23 165.5 11.8 340 110-464 273-662 (1034)
138 KOG0389 SNF2 family DNA-depend 99.8 1.6E-18 3.4E-23 171.1 12.4 133 312-452 761-897 (941)
139 KOG0392 SNF2 family DNA-depend 99.8 2E-17 4.4E-22 169.8 18.2 120 328-455 1340-1466(1549)
140 KOG0953 Mitochondrial RNA heli 99.8 2.7E-17 5.9E-22 156.6 17.7 281 141-464 192-493 (700)
141 PF00271 Helicase_C: Helicase 99.7 3.8E-18 8.3E-23 127.4 6.5 78 346-431 1-78 (78)
142 smart00487 DEXDc DEAD-like hel 99.7 5.7E-17 1.2E-21 144.6 13.6 169 119-290 4-190 (201)
143 PRK11747 dinG ATP-dependent DN 99.7 1.3E-15 2.8E-20 159.2 23.2 122 315-440 521-671 (697)
144 PRK12901 secA preprotein trans 99.7 3.3E-16 7.2E-21 161.4 16.9 126 309-445 609-743 (1112)
145 PF06862 DUF1253: Protein of u 99.7 9.7E-15 2.1E-19 140.7 25.0 271 166-444 32-416 (442)
146 COG1199 DinG Rad3-related DNA 99.7 9.5E-16 2.1E-20 161.4 19.4 133 327-462 478-637 (654)
147 KOG0391 SNF2 family DNA-depend 99.7 7.1E-16 1.5E-20 157.3 17.0 129 310-444 1258-1388(1958)
148 KOG0951 RNA helicase BRR2, DEA 99.7 2.2E-15 4.7E-20 155.5 18.8 299 124-446 1144-1497(1674)
149 KOG0386 Chromatin remodeling c 99.6 9.7E-16 2.1E-20 155.2 8.7 305 123-441 394-834 (1157)
150 cd00046 DEXDc DEAD-like helica 99.6 5.5E-15 1.2E-19 124.0 11.2 117 141-261 1-117 (144)
151 TIGR00604 rad3 DNA repair heli 99.6 7.3E-14 1.6E-18 147.3 21.0 76 119-194 6-83 (705)
152 smart00490 HELICc helicase sup 99.6 3.2E-15 6.9E-20 112.8 7.5 81 343-431 2-82 (82)
153 PF04851 ResIII: Type III rest 99.6 3.5E-15 7.7E-20 131.4 8.9 143 123-271 3-183 (184)
154 KOG2340 Uncharacterized conser 99.6 1.7E-13 3.7E-18 130.2 18.2 316 122-444 215-669 (698)
155 KOG1002 Nucleotide excision re 99.6 1.2E-12 2.5E-17 123.6 22.6 126 311-444 619-750 (791)
156 KOG0388 SNF2 family DNA-depend 99.6 5.4E-14 1.2E-18 137.5 14.0 126 310-443 1026-1154(1185)
157 PRK14873 primosome assembly pr 99.5 6E-14 1.3E-18 144.1 10.5 277 144-444 164-539 (665)
158 KOG4439 RNA polymerase II tran 99.5 2E-13 4.4E-18 133.7 13.4 126 311-444 728-859 (901)
159 TIGR02562 cas3_yersinia CRISPR 99.5 2.4E-12 5.1E-17 134.1 19.8 298 123-432 408-881 (1110)
160 PF02399 Herpes_ori_bp: Origin 99.4 1.3E-11 2.7E-16 125.5 19.5 274 141-441 50-386 (824)
161 COG0653 SecA Preprotein transl 99.4 2E-12 4.3E-17 132.1 13.0 307 119-443 77-545 (822)
162 KOG1015 Transcription regulato 99.3 3.3E-11 7.2E-16 121.7 15.2 120 314-441 1128-1275(1567)
163 PF07652 Flavi_DEAD: Flaviviru 99.3 3.9E-12 8.5E-17 102.5 6.6 117 141-274 5-140 (148)
164 COG0553 HepA Superfamily II DN 99.2 3.3E-11 7.2E-16 132.1 12.2 125 312-444 692-823 (866)
165 COG0610 Type I site-specific r 99.2 3.3E-10 7.2E-15 122.0 18.7 126 139-271 272-414 (962)
166 PF00176 SNF2_N: SNF2 family N 99.2 1.5E-10 3.4E-15 110.2 10.5 125 141-271 26-173 (299)
167 KOG0921 Dosage compensation co 99.1 1.8E-10 4E-15 116.1 9.2 288 140-441 393-772 (1282)
168 smart00489 DEXDc3 DEAD-like he 99.1 4.5E-10 9.7E-15 105.3 10.4 73 119-194 5-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.1 4.5E-10 9.7E-15 105.3 10.4 73 119-194 5-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 3.5E-09 7.6E-14 96.5 7.3 136 114-261 69-211 (266)
171 KOG1133 Helicase of the DEAD s 98.7 5.4E-06 1.2E-10 82.6 24.4 130 328-460 629-797 (821)
172 KOG0952 DNA/RNA helicase MER3/ 98.6 4.4E-08 9.5E-13 101.2 5.2 133 123-262 927-1061(1230)
173 KOG1016 Predicted DNA helicase 98.5 1.8E-07 3.8E-12 93.6 5.4 103 328-438 719-842 (1387)
174 TIGR00596 rad1 DNA repair prot 98.5 1.5E-06 3.2E-11 91.6 12.3 38 224-261 8-45 (814)
175 PF13086 AAA_11: AAA domain; P 98.4 3E-07 6.5E-12 84.1 5.7 67 124-193 2-75 (236)
176 PRK15483 type III restriction- 98.4 2.9E-07 6.4E-12 97.0 6.2 71 378-456 501-580 (986)
177 PF13307 Helicase_C_2: Helicas 98.4 4.6E-07 1E-11 77.9 5.5 112 327-440 8-147 (167)
178 KOG1001 Helicase-like transcri 98.3 2.2E-06 4.7E-11 88.4 9.5 101 329-437 540-642 (674)
179 PF12340 DUF3638: Protein of u 98.2 6.6E-06 1.4E-10 72.7 7.7 156 100-261 3-186 (229)
180 PF13604 AAA_30: AAA domain; P 98.1 1.9E-06 4.2E-11 76.1 3.1 64 124-190 2-65 (196)
181 KOG1802 RNA helicase nonsense 98.1 1.2E-05 2.5E-10 79.8 8.4 72 119-194 406-477 (935)
182 PF09848 DUF2075: Uncharacteri 98.0 9.3E-06 2E-10 79.0 6.6 96 141-261 2-97 (352)
183 KOG1131 RNA polymerase II tran 98.0 0.00014 3E-09 70.5 13.3 115 328-443 530-680 (755)
184 PF13872 AAA_34: P-loop contai 98.0 5.6E-05 1.2E-09 69.5 9.9 142 104-261 25-186 (303)
185 PF13245 AAA_19: Part of AAA d 98.0 1.6E-05 3.6E-10 58.0 5.2 51 141-191 11-62 (76)
186 KOG1803 DNA helicase [Replicat 97.8 2.9E-05 6.3E-10 76.7 5.5 65 123-191 185-249 (649)
187 PF02562 PhoH: PhoH-like prote 97.8 8.9E-06 1.9E-10 71.4 1.7 59 122-183 3-61 (205)
188 COG3421 Uncharacterized protei 97.7 0.00034 7.4E-09 69.1 10.4 115 145-261 2-126 (812)
189 COG3587 Restriction endonuclea 97.6 0.0001 2.2E-09 75.6 6.8 71 377-455 482-564 (985)
190 KOG1132 Helicase of the DEAD s 97.6 9.4E-05 2E-09 76.1 5.9 112 329-441 562-720 (945)
191 smart00492 HELICc3 helicase su 97.5 0.00041 8.8E-09 57.5 7.3 85 356-440 25-135 (141)
192 PF00580 UvrD-helicase: UvrD/R 97.5 0.00019 4.2E-09 68.7 5.9 70 124-197 1-71 (315)
193 PRK10875 recD exonuclease V su 97.4 0.00034 7.3E-09 72.2 7.7 68 125-195 154-223 (615)
194 TIGR01447 recD exodeoxyribonuc 97.4 0.00024 5.2E-09 73.1 6.4 67 125-194 147-216 (586)
195 smart00491 HELICc2 helicase su 97.4 0.00045 9.8E-09 57.3 6.3 100 341-440 4-136 (142)
196 KOG0383 Predicted helicase [Ge 97.3 2.2E-05 4.7E-10 80.3 -2.4 79 312-391 615-696 (696)
197 TIGR01448 recD_rel helicase, p 97.3 0.00067 1.5E-08 72.0 8.1 66 119-188 320-385 (720)
198 PRK12723 flagellar biosynthesi 97.2 0.004 8.6E-08 60.7 11.5 57 141-200 175-234 (388)
199 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0025 5.4E-08 68.0 9.4 75 107-187 338-412 (744)
200 PF14617 CMS1: U3-containing 9 97.0 0.00082 1.8E-08 60.9 4.3 87 169-257 124-211 (252)
201 COG1875 NYN ribonuclease and A 96.8 0.00068 1.5E-08 63.4 2.6 66 119-184 224-289 (436)
202 PRK05580 primosome assembly pr 96.8 0.025 5.3E-07 60.0 14.5 101 304-405 166-267 (679)
203 TIGR00376 DNA helicase, putati 96.8 0.0024 5.2E-08 66.8 6.1 67 123-193 157-223 (637)
204 PF13401 AAA_22: AAA domain; P 96.7 0.00073 1.6E-08 55.4 1.6 17 141-157 5-21 (131)
205 KOG1805 DNA replication helica 96.7 0.0042 9.2E-08 65.0 7.1 141 104-262 655-811 (1100)
206 smart00382 AAA ATPases associa 96.6 0.002 4.2E-08 53.2 3.7 40 141-183 3-42 (148)
207 PRK13889 conjugal transfer rel 96.6 0.0042 9.2E-08 67.4 6.9 60 123-186 346-405 (988)
208 PRK13826 Dtr system oriT relax 96.6 0.0095 2.1E-07 65.2 9.3 76 106-187 366-441 (1102)
209 TIGR02760 TraI_TIGR conjugativ 96.5 0.045 9.7E-07 64.5 15.0 65 123-190 429-493 (1960)
210 PRK04296 thymidine kinase; Pro 96.5 0.0018 3.9E-08 56.9 3.0 37 141-180 3-39 (190)
211 KOG0989 Replication factor C, 96.5 0.0033 7.2E-08 57.6 4.6 49 99-163 32-80 (346)
212 PRK10919 ATP-dependent DNA hel 96.5 0.0075 1.6E-07 63.9 8.0 70 123-196 2-72 (672)
213 PRK10917 ATP-dependent DNA hel 96.5 0.022 4.8E-07 60.5 11.5 100 303-402 285-389 (681)
214 KOG0298 DEAD box-containing he 96.5 0.0054 1.2E-07 66.0 6.7 96 141-240 375-485 (1394)
215 COG1419 FlhF Flagellar GTP-bin 96.5 0.037 8E-07 53.3 11.7 111 141-281 204-335 (407)
216 PRK14722 flhF flagellar biosyn 96.4 0.011 2.4E-07 57.1 7.5 19 141-159 138-156 (374)
217 PF05127 Helicase_RecD: Helica 96.3 0.0029 6.4E-08 54.1 2.9 114 144-271 1-124 (177)
218 TIGR00595 priA primosomal prot 96.3 0.027 5.8E-07 57.4 10.2 94 310-404 7-101 (505)
219 cd00009 AAA The AAA+ (ATPases 96.3 0.016 3.5E-07 48.0 7.3 16 141-156 20-35 (151)
220 PF13871 Helicase_C_4: Helicas 96.3 0.013 2.8E-07 54.0 6.8 67 368-442 51-126 (278)
221 PF05970 PIF1: PIF1-like helic 96.2 0.0085 1.8E-07 58.5 6.1 59 124-187 2-66 (364)
222 TIGR01074 rep ATP-dependent DN 96.2 0.016 3.4E-07 61.8 8.3 68 124-195 2-70 (664)
223 TIGR00643 recG ATP-dependent D 96.1 0.046 9.9E-07 57.6 10.9 99 304-402 260-363 (630)
224 COG2805 PilT Tfp pilus assembl 96.0 0.013 2.8E-07 53.7 5.3 52 96-169 102-153 (353)
225 TIGR00580 mfd transcription-re 95.9 0.06 1.3E-06 58.7 11.1 100 303-402 475-579 (926)
226 PRK05703 flhF flagellar biosyn 95.9 0.048 1E-06 54.2 9.6 18 141-158 222-239 (424)
227 COG3973 Superfamily I DNA and 95.9 0.032 6.9E-07 55.9 8.0 93 104-196 186-285 (747)
228 TIGR03499 FlhF flagellar biosy 95.9 0.027 5.8E-07 52.9 7.3 85 141-256 195-281 (282)
229 PF00448 SRP54: SRP54-type pro 95.8 0.04 8.6E-07 48.6 7.8 56 141-202 2-59 (196)
230 PRK11054 helD DNA helicase IV; 95.8 0.027 5.8E-07 59.4 7.6 72 121-196 194-266 (684)
231 TIGR01075 uvrD DNA helicase II 95.8 0.015 3.3E-07 62.2 5.9 71 122-196 3-74 (715)
232 PRK14873 primosome assembly pr 95.7 0.052 1.1E-06 56.9 9.4 93 311-404 171-265 (665)
233 PRK11889 flhF flagellar biosyn 95.7 0.074 1.6E-06 51.5 9.6 38 141-181 242-281 (436)
234 COG1444 Predicted P-loop ATPas 95.6 0.087 1.9E-06 55.1 10.2 138 119-271 210-357 (758)
235 PRK11773 uvrD DNA-dependent he 95.6 0.02 4.3E-07 61.4 5.7 70 123-196 9-79 (721)
236 PRK06526 transposase; Provisio 95.5 0.019 4.1E-07 52.8 4.8 18 141-158 99-116 (254)
237 PRK10536 hypothetical protein; 95.5 0.019 4.1E-07 52.2 4.5 61 119-182 55-115 (262)
238 COG1198 PriA Primosomal protei 95.5 0.049 1.1E-06 57.2 8.1 98 304-402 221-319 (730)
239 PF05876 Terminase_GpA: Phage 95.5 0.025 5.4E-07 58.3 5.9 128 123-260 16-147 (557)
240 COG1484 DnaC DNA replication p 95.4 0.023 5E-07 52.3 5.0 47 141-191 106-152 (254)
241 COG3972 Superfamily I DNA and 95.3 0.069 1.5E-06 52.3 7.8 80 110-195 151-230 (660)
242 PRK14712 conjugal transfer nic 95.3 0.026 5.7E-07 64.0 5.7 64 123-187 835-900 (1623)
243 COG4962 CpaF Flp pilus assembl 95.2 0.041 9E-07 51.7 6.0 77 97-184 137-213 (355)
244 TIGR02525 plasmid_TraJ plasmid 95.2 0.036 7.8E-07 53.8 5.8 37 141-178 150-186 (372)
245 PRK14087 dnaA chromosomal repl 95.2 0.083 1.8E-06 53.0 8.6 49 141-191 142-190 (450)
246 PRK13709 conjugal transfer nic 95.2 0.038 8.3E-07 63.6 6.6 64 123-187 967-1032(1747)
247 PRK13833 conjugal transfer pro 95.1 0.022 4.8E-07 54.1 3.9 58 124-183 129-186 (323)
248 PRK10689 transcription-repair 95.1 0.16 3.5E-06 56.8 11.2 100 303-402 624-728 (1147)
249 TIGR02782 TrbB_P P-type conjug 95.1 0.028 6.1E-07 53.1 4.6 58 124-183 117-174 (299)
250 TIGR02785 addA_Gpos recombinat 95.1 0.039 8.5E-07 62.6 6.4 68 124-195 2-69 (1232)
251 PRK13894 conjugal transfer ATP 95.1 0.021 4.5E-07 54.4 3.6 58 124-183 133-190 (319)
252 cd01120 RecA-like_NTPases RecA 95.0 0.07 1.5E-06 45.2 6.6 37 143-182 2-38 (165)
253 KOG0991 Replication factor C, 95.0 0.035 7.7E-07 48.9 4.4 21 137-157 45-65 (333)
254 TIGR02881 spore_V_K stage V sp 95.0 0.051 1.1E-06 50.5 5.9 17 141-157 43-59 (261)
255 COG1110 Reverse gyrase [DNA re 94.9 0.13 2.8E-06 54.9 9.1 85 304-388 101-191 (1187)
256 PRK08181 transposase; Validate 94.9 0.079 1.7E-06 49.1 6.7 43 141-187 107-149 (269)
257 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.05 1.1E-06 52.7 5.7 25 141-166 135-159 (358)
258 COG2804 PulE Type II secretory 94.8 0.026 5.7E-07 55.8 3.5 43 125-168 243-285 (500)
259 PHA02533 17 large terminase pr 94.8 0.14 3E-06 52.5 8.8 71 123-196 59-129 (534)
260 TIGR01073 pcrA ATP-dependent D 94.7 0.051 1.1E-06 58.4 5.9 70 123-196 4-74 (726)
261 PLN03025 replication factor C 94.7 0.13 2.9E-06 49.3 8.1 17 141-157 35-51 (319)
262 PRK14956 DNA polymerase III su 94.7 0.13 2.9E-06 51.3 8.2 19 141-159 41-59 (484)
263 KOG0738 AAA+-type ATPase [Post 94.6 0.099 2.1E-06 49.8 6.7 18 139-156 244-261 (491)
264 PRK00149 dnaA chromosomal repl 94.6 0.14 3E-06 51.7 8.3 45 141-187 149-193 (450)
265 PF02456 Adeno_IVa2: Adenoviru 94.4 0.12 2.5E-06 47.8 6.5 41 142-184 89-130 (369)
266 PRK00411 cdc6 cell division co 94.4 0.093 2E-06 52.0 6.5 36 141-177 56-91 (394)
267 KOG0739 AAA+-type ATPase [Post 94.3 0.43 9.4E-06 43.9 9.8 83 98-194 128-213 (439)
268 TIGR02760 TraI_TIGR conjugativ 94.3 0.062 1.3E-06 63.4 5.7 64 122-187 1018-1084(1960)
269 PF03354 Terminase_1: Phage Te 94.2 0.16 3.4E-06 51.7 7.8 112 141-261 23-137 (477)
270 COG2256 MGS1 ATPase related to 94.2 0.062 1.3E-06 51.4 4.4 17 141-157 49-65 (436)
271 PF00308 Bac_DnaA: Bacterial d 94.2 0.08 1.7E-06 47.6 5.1 39 141-180 35-73 (219)
272 PRK06893 DNA replication initi 94.2 0.11 2.4E-06 47.2 6.0 16 141-156 40-55 (229)
273 PRK07764 DNA polymerase III su 94.2 0.2 4.3E-06 54.0 8.7 47 99-161 11-58 (824)
274 COG1474 CDC6 Cdc6-related prot 94.2 0.11 2.4E-06 50.4 6.3 34 133-167 35-68 (366)
275 PRK14723 flhF flagellar biosyn 94.1 0.18 3.8E-06 53.4 8.1 19 141-159 186-204 (767)
276 COG1435 Tdk Thymidine kinase [ 94.1 0.2 4.3E-06 43.3 6.9 90 141-259 5-94 (201)
277 PRK07952 DNA replication prote 94.1 0.36 7.9E-06 44.0 9.2 34 141-177 100-133 (244)
278 PRK11331 5-methylcytosine-spec 94.0 0.12 2.7E-06 51.0 6.2 33 124-158 180-212 (459)
279 PTZ00112 origin recognition co 94.0 0.22 4.9E-06 52.9 8.3 22 143-165 784-805 (1164)
280 CHL00181 cbbX CbbX; Provisiona 94.0 0.15 3.2E-06 47.9 6.6 19 141-159 60-78 (287)
281 PRK14088 dnaA chromosomal repl 93.9 0.23 5E-06 49.8 8.2 38 141-179 131-168 (440)
282 PHA03333 putative ATPase subun 93.9 0.31 6.7E-06 50.4 9.0 77 120-198 166-243 (752)
283 PRK05642 DNA replication initi 93.9 0.13 2.8E-06 46.9 5.9 36 141-179 46-81 (234)
284 PRK12726 flagellar biosynthesi 93.9 0.19 4E-06 48.6 7.1 39 141-182 207-247 (407)
285 PF05496 RuvB_N: Holliday junc 93.9 0.1 2.3E-06 46.3 5.0 16 141-156 51-66 (233)
286 TIGR02880 cbbX_cfxQ probable R 93.9 0.19 4.1E-06 47.3 7.0 17 141-157 59-75 (284)
287 PRK14974 cell division protein 93.8 0.23 5E-06 47.6 7.6 35 141-178 141-175 (336)
288 TIGR01547 phage_term_2 phage t 93.8 0.21 4.6E-06 49.5 7.7 111 141-260 2-114 (396)
289 KOG2028 ATPase related to the 93.8 1.3 2.7E-05 42.2 11.9 18 140-157 162-179 (554)
290 TIGR00362 DnaA chromosomal rep 93.7 0.14 3.1E-06 50.9 6.4 38 141-179 137-174 (405)
291 PRK14949 DNA polymerase III su 93.7 0.32 7E-06 52.1 9.1 18 142-159 40-57 (944)
292 PRK14721 flhF flagellar biosyn 93.7 0.46 9.9E-06 47.0 9.6 18 141-158 192-209 (420)
293 TIGR03015 pepcterm_ATPase puta 93.6 0.13 2.8E-06 48.0 5.5 17 141-157 44-60 (269)
294 PRK08727 hypothetical protein; 93.6 0.11 2.3E-06 47.4 4.7 16 141-156 42-57 (233)
295 TIGR02533 type_II_gspE general 93.5 0.12 2.6E-06 52.3 5.5 41 126-167 228-268 (486)
296 PRK14964 DNA polymerase III su 93.5 0.45 9.7E-06 48.0 9.3 46 99-160 9-55 (491)
297 PRK07003 DNA polymerase III su 93.5 0.29 6.3E-06 51.4 8.1 45 99-159 12-57 (830)
298 cd01129 PulE-GspE PulE/GspE Th 93.4 0.11 2.3E-06 48.3 4.4 40 126-166 66-105 (264)
299 PRK14959 DNA polymerase III su 93.2 0.47 1E-05 49.1 9.1 21 141-161 39-59 (624)
300 PRK14701 reverse gyrase; Provi 93.2 0.53 1.1E-05 54.6 10.4 83 305-387 99-187 (1638)
301 COG0513 SrmB Superfamily II DN 93.2 1.4 3.1E-05 45.2 12.7 68 331-402 102-180 (513)
302 cd01126 TraG_VirD4 The TraG/Tr 93.2 0.087 1.9E-06 52.0 3.7 48 142-194 1-48 (384)
303 PRK13342 recombination factor 93.1 0.38 8.2E-06 48.0 8.3 17 141-157 37-53 (413)
304 PRK04328 hypothetical protein; 93.1 0.26 5.7E-06 45.3 6.6 51 141-195 24-74 (249)
305 PRK12727 flagellar biosynthesi 93.1 0.29 6.3E-06 49.4 7.2 17 141-157 351-367 (559)
306 PRK10436 hypothetical protein; 93.0 0.098 2.1E-06 52.5 3.9 26 141-167 219-244 (462)
307 PRK08084 DNA replication initi 93.0 0.15 3.2E-06 46.5 4.7 16 141-156 46-61 (235)
308 PRK06995 flhF flagellar biosyn 93.0 0.38 8.3E-06 48.3 7.9 89 141-235 257-347 (484)
309 KOG0701 dsRNA-specific nucleas 93.0 0.052 1.1E-06 61.2 2.0 94 330-431 294-399 (1606)
310 PRK14965 DNA polymerase III su 93.0 0.64 1.4E-05 48.4 9.8 45 99-159 12-57 (576)
311 PRK14962 DNA polymerase III su 92.9 0.32 7E-06 49.1 7.3 19 141-159 37-55 (472)
312 COG5008 PilU Tfp pilus assembl 92.8 0.21 4.5E-06 45.2 5.1 52 98-171 106-157 (375)
313 PRK06645 DNA polymerase III su 92.7 0.44 9.6E-06 48.4 8.1 46 98-159 16-62 (507)
314 PRK14952 DNA polymerase III su 92.7 0.57 1.2E-05 48.5 9.0 46 99-160 9-55 (584)
315 PRK13851 type IV secretion sys 92.7 0.11 2.3E-06 50.1 3.5 40 141-184 163-202 (344)
316 TIGR01425 SRP54_euk signal rec 92.7 0.63 1.4E-05 46.0 8.8 56 141-202 101-158 (429)
317 TIGR02928 orc1/cdc6 family rep 92.6 0.25 5.4E-06 48.4 6.2 24 141-165 41-64 (365)
318 PRK05563 DNA polymerase III su 92.6 0.57 1.2E-05 48.5 8.9 46 99-160 12-58 (559)
319 PRK14963 DNA polymerase III su 92.5 0.29 6.2E-06 49.9 6.4 19 141-159 37-55 (504)
320 TIGR01054 rgy reverse gyrase. 92.5 0.66 1.4E-05 52.3 9.7 98 305-402 98-205 (1171)
321 PF05621 TniB: Bacterial TniB 92.5 0.5 1.1E-05 44.1 7.4 16 141-156 62-77 (302)
322 PTZ00293 thymidine kinase; Pro 92.4 0.33 7.2E-06 42.9 5.9 38 141-181 5-42 (211)
323 TIGR00064 ftsY signal recognit 92.4 0.32 7E-06 45.3 6.2 54 141-200 73-128 (272)
324 PRK14960 DNA polymerase III su 92.4 0.66 1.4E-05 48.2 8.8 19 141-159 38-56 (702)
325 TIGR01420 pilT_fam pilus retra 92.4 0.29 6.4E-06 47.4 6.1 41 141-183 123-163 (343)
326 PRK13897 type IV secretion sys 92.3 0.16 3.5E-06 52.7 4.5 49 141-194 159-207 (606)
327 PF01443 Viral_helicase1: Vira 92.3 0.06 1.3E-06 49.0 1.2 14 143-156 1-14 (234)
328 PRK11823 DNA repair protein Ra 92.3 0.38 8.2E-06 48.3 7.0 50 141-194 81-130 (446)
329 COG0470 HolB ATPase involved i 92.2 0.48 1E-05 45.5 7.5 19 141-159 24-43 (325)
330 PRK12323 DNA polymerase III su 92.2 0.66 1.4E-05 48.1 8.5 19 141-159 39-57 (700)
331 TIGR03420 DnaA_homol_Hda DnaA 92.2 0.3 6.5E-06 44.1 5.6 17 141-157 39-55 (226)
332 PF02534 T4SS-DNA_transf: Type 92.2 0.15 3.2E-06 51.9 4.0 50 141-195 45-94 (469)
333 PRK12402 replication factor C 92.1 0.4 8.7E-06 46.3 6.8 16 142-157 38-53 (337)
334 PRK09111 DNA polymerase III su 92.1 0.66 1.4E-05 48.3 8.6 46 99-160 20-66 (598)
335 TIGR02538 type_IV_pilB type IV 92.1 0.15 3.2E-06 52.9 3.9 40 126-166 302-341 (564)
336 KOG2227 Pre-initiation complex 92.1 7.1 0.00015 38.7 14.7 49 141-190 176-225 (529)
337 PRK05896 DNA polymerase III su 92.1 0.9 2E-05 46.9 9.3 45 99-159 12-57 (605)
338 PRK14086 dnaA chromosomal repl 92.0 0.56 1.2E-05 48.4 7.8 45 141-187 315-359 (617)
339 PHA03368 DNA packaging termina 92.0 1.4 3E-05 45.7 10.4 110 141-261 255-366 (738)
340 PRK12422 chromosomal replicati 91.9 0.56 1.2E-05 47.0 7.6 36 141-179 142-177 (445)
341 TIGR03877 thermo_KaiC_1 KaiC d 91.9 0.24 5.2E-06 45.2 4.7 51 141-195 22-72 (237)
342 TIGR00767 rho transcription te 91.9 0.3 6.4E-06 47.6 5.4 28 140-168 168-195 (415)
343 PRK13341 recombination factor 91.9 0.59 1.3E-05 49.8 8.1 17 141-157 53-69 (725)
344 COG1702 PhoH Phosphate starvat 91.9 0.078 1.7E-06 49.7 1.4 45 121-167 126-170 (348)
345 PRK14955 DNA polymerase III su 91.9 0.76 1.6E-05 45.5 8.5 19 141-159 39-57 (397)
346 COG1219 ClpX ATP-dependent pro 91.8 0.11 2.4E-06 48.2 2.3 17 141-157 98-114 (408)
347 PRK07994 DNA polymerase III su 91.8 0.6 1.3E-05 48.8 7.9 18 142-159 40-57 (647)
348 PRK14958 DNA polymerase III su 91.8 0.83 1.8E-05 46.7 8.8 45 99-159 12-57 (509)
349 PRK04195 replication factor C 91.8 0.56 1.2E-05 47.8 7.7 47 98-157 9-56 (482)
350 PRK06731 flhF flagellar biosyn 91.8 1.7 3.6E-05 40.4 10.1 20 141-160 76-95 (270)
351 PHA02544 44 clamp loader, smal 91.8 0.61 1.3E-05 44.6 7.6 43 98-156 16-59 (316)
352 PRK14951 DNA polymerase III su 91.7 0.84 1.8E-05 47.5 8.8 20 141-160 39-58 (618)
353 PRK00440 rfc replication facto 91.7 0.83 1.8E-05 43.7 8.5 17 141-157 39-55 (319)
354 cd01122 GP4d_helicase GP4d_hel 91.7 0.34 7.3E-06 45.2 5.6 49 141-192 31-79 (271)
355 PRK14961 DNA polymerase III su 91.7 0.51 1.1E-05 46.1 7.0 19 141-159 39-57 (363)
356 PRK06921 hypothetical protein; 91.6 0.56 1.2E-05 43.5 6.9 43 141-186 118-160 (266)
357 PRK13850 type IV secretion sys 91.5 0.24 5.2E-06 52.0 4.7 49 141-194 140-188 (670)
358 PRK05707 DNA polymerase III su 91.5 0.23 5E-06 47.6 4.2 36 124-159 4-41 (328)
359 COG1200 RecG RecG-like helicas 91.5 1.3 2.7E-05 45.8 9.5 82 322-403 305-391 (677)
360 PRK06835 DNA replication prote 91.5 0.3 6.6E-06 46.7 5.0 43 141-187 184-226 (329)
361 PRK08769 DNA polymerase III su 91.4 0.67 1.5E-05 44.1 7.2 38 122-159 3-45 (319)
362 COG1197 Mfd Transcription-repa 91.4 1.4 3E-05 48.5 10.2 92 311-402 626-722 (1139)
363 cd01124 KaiC KaiC is a circadi 91.4 0.27 5.9E-06 42.8 4.3 48 143-194 2-49 (187)
364 PRK12724 flagellar biosynthesi 91.3 0.87 1.9E-05 44.8 7.9 44 141-186 224-269 (432)
365 PF06733 DEAD_2: DEAD_2; Inte 91.3 0.14 2.9E-06 44.3 2.3 49 223-271 119-170 (174)
366 PRK00771 signal recognition pa 91.1 0.73 1.6E-05 45.9 7.4 54 141-200 96-151 (437)
367 PF00437 T2SE: Type II/IV secr 91.0 0.18 3.8E-06 47.1 2.9 40 141-183 128-167 (270)
368 TIGR02012 tigrfam_recA protein 91.0 0.45 9.8E-06 45.2 5.6 42 141-185 56-97 (321)
369 PRK13900 type IV secretion sys 91.0 0.22 4.7E-06 47.9 3.5 40 141-184 161-200 (332)
370 COG1222 RPT1 ATP-dependent 26S 91.0 1.6 3.4E-05 41.6 8.9 54 98-156 146-201 (406)
371 cd01121 Sms Sms (bacterial rad 90.9 0.75 1.6E-05 44.9 7.1 50 141-194 83-132 (372)
372 PRK13764 ATPase; Provisional 90.8 0.4 8.7E-06 49.5 5.4 25 141-166 258-282 (602)
373 KOG0331 ATP-dependent RNA heli 90.8 3.9 8.5E-05 41.3 12.0 98 328-429 165-272 (519)
374 PRK09354 recA recombinase A; P 90.7 0.48 1E-05 45.5 5.5 42 141-185 61-102 (349)
375 PRK14948 DNA polymerase III su 90.7 1.2 2.5E-05 46.8 8.7 46 99-159 12-57 (620)
376 KOG0347 RNA helicase [RNA proc 90.6 0.57 1.2E-05 46.7 5.9 52 331-386 266-321 (731)
377 PF12846 AAA_10: AAA-like doma 90.5 0.28 6.1E-06 46.4 3.8 42 141-185 2-43 (304)
378 PRK08451 DNA polymerase III su 90.4 1.3 2.8E-05 45.2 8.6 46 99-159 10-55 (535)
379 PRK11776 ATP-dependent RNA hel 90.4 2.7 5.9E-05 42.6 11.1 98 303-404 44-155 (460)
380 cd01131 PilT Pilus retraction 90.3 0.27 5.9E-06 43.4 3.3 36 142-179 3-38 (198)
381 PF13177 DNA_pol3_delta2: DNA 90.3 0.72 1.6E-05 39.3 5.8 21 141-161 20-40 (162)
382 cd01130 VirB11-like_ATPase Typ 90.1 0.35 7.6E-06 42.3 3.8 32 124-156 10-41 (186)
383 TIGR03878 thermo_KaiC_2 KaiC d 90.0 0.67 1.4E-05 42.9 5.7 35 141-178 37-71 (259)
384 COG1074 RecB ATP-dependent exo 90.0 0.42 9.2E-06 53.9 5.2 54 141-194 17-72 (1139)
385 PRK07940 DNA polymerase III su 89.8 3.2 6.8E-05 41.0 10.5 19 141-159 37-55 (394)
386 cd00268 DEADc DEAD-box helicas 89.8 3.6 7.8E-05 36.2 10.2 97 303-403 39-150 (203)
387 KOG0742 AAA+-type ATPase [Post 89.7 0.52 1.1E-05 45.3 4.7 17 140-156 384-400 (630)
388 PRK08116 hypothetical protein; 89.5 0.65 1.4E-05 43.2 5.3 42 141-186 115-156 (268)
389 PF01695 IstB_IS21: IstB-like 89.4 0.45 9.8E-06 41.2 3.9 42 141-186 48-89 (178)
390 PRK13876 conjugal transfer cou 89.4 0.44 9.4E-06 50.1 4.4 49 141-194 145-193 (663)
391 PRK13822 conjugal transfer cou 89.2 0.53 1.2E-05 49.4 4.9 49 141-194 225-273 (641)
392 COG0466 Lon ATP-dependent Lon 89.1 0.77 1.7E-05 47.5 5.8 30 229-261 402-431 (782)
393 PRK05973 replicative DNA helic 89.1 0.79 1.7E-05 41.5 5.3 65 123-194 50-114 (237)
394 KOG0740 AAA+-type ATPase [Post 89.0 5.9 0.00013 39.0 11.5 16 141-156 187-202 (428)
395 TIGR02784 addA_alphas double-s 89.0 0.73 1.6E-05 52.4 6.2 55 141-195 11-65 (1141)
396 TIGR00614 recQ_fam ATP-depende 89.0 2.8 6E-05 42.7 9.8 96 303-402 29-133 (470)
397 TIGR02767 TraG-Ti Ti-type conj 88.9 0.58 1.3E-05 48.8 4.9 50 141-195 212-261 (623)
398 PRK07133 DNA polymerase III su 88.9 0.92 2E-05 47.9 6.3 19 141-159 41-59 (725)
399 PRK11192 ATP-dependent RNA hel 88.9 8 0.00017 38.8 13.1 98 303-404 41-155 (434)
400 COG1136 SalX ABC-type antimicr 88.9 0.53 1.1E-05 42.1 4.0 27 141-169 32-58 (226)
401 PRK09401 reverse gyrase; Revie 88.8 2.5 5.4E-05 47.8 10.0 99 304-402 99-207 (1176)
402 KOG0298 DEAD box-containing he 88.7 0.47 1E-05 51.9 4.1 110 323-444 1216-1327(1394)
403 COG3267 ExeA Type II secretory 88.7 1.3 2.8E-05 40.0 6.2 25 141-166 52-76 (269)
404 cd01393 recA_like RecA is a b 88.7 0.97 2.1E-05 40.8 5.8 41 141-181 20-63 (226)
405 PRK07471 DNA polymerase III su 88.6 2.7 5.8E-05 41.0 9.0 18 141-158 42-59 (365)
406 PF04665 Pox_A32: Poxvirus A32 88.6 0.53 1.2E-05 42.6 3.9 37 141-180 14-50 (241)
407 PHA03372 DNA packaging termina 88.6 3.3 7.3E-05 42.4 9.7 102 141-261 203-313 (668)
408 PRK10867 signal recognition pa 88.6 0.64 1.4E-05 46.2 4.8 56 141-201 101-158 (433)
409 PRK13880 conjugal transfer cou 88.6 0.51 1.1E-05 49.6 4.3 46 141-191 176-221 (636)
410 COG0210 UvrD Superfamily I DNA 88.5 0.88 1.9E-05 48.5 6.1 70 123-196 2-72 (655)
411 PF03237 Terminase_6: Terminas 88.5 1.9 4E-05 42.1 8.1 42 144-186 1-42 (384)
412 PF06745 KaiC: KaiC; InterPro 88.4 0.43 9.4E-06 43.1 3.3 53 140-195 19-71 (226)
413 TIGR02238 recomb_DMC1 meiotic 88.4 0.94 2E-05 43.1 5.6 42 140-181 96-140 (313)
414 TIGR00635 ruvB Holliday juncti 88.4 0.37 8E-06 45.9 2.9 16 141-156 31-46 (305)
415 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.3 0.56 1.2E-05 41.7 3.8 38 141-178 39-76 (205)
416 TIGR03743 SXT_TraD conjugative 88.3 0.74 1.6E-05 48.3 5.2 54 140-196 176-231 (634)
417 TIGR00678 holB DNA polymerase 88.3 1.8 4E-05 37.7 7.1 18 141-158 15-32 (188)
418 PRK08691 DNA polymerase III su 88.2 1.4 3E-05 46.3 6.9 45 99-159 12-57 (709)
419 cd01125 repA Hexameric Replica 88.2 3.3 7.1E-05 37.8 8.9 56 141-197 2-66 (239)
420 PRK12377 putative replication 88.2 1.7 3.7E-05 39.8 6.9 44 141-188 102-145 (248)
421 PRK14954 DNA polymerase III su 88.1 1 2.2E-05 47.1 6.0 19 141-159 39-57 (620)
422 PF13481 AAA_25: AAA domain; P 87.9 1.1 2.4E-05 39.2 5.5 64 130-196 23-94 (193)
423 PRK14957 DNA polymerase III su 87.9 1.7 3.7E-05 44.7 7.3 19 141-159 39-57 (546)
424 TIGR02397 dnaX_nterm DNA polym 87.9 1.6 3.4E-05 42.5 7.1 17 141-157 37-53 (355)
425 COG2255 RuvB Holliday junction 87.9 0.87 1.9E-05 41.8 4.7 29 229-261 89-117 (332)
426 PRK14970 DNA polymerase III su 87.9 1.8 3.9E-05 42.4 7.4 44 99-157 13-56 (367)
427 PRK10865 protein disaggregatio 87.6 1.7 3.7E-05 47.6 7.7 21 137-157 196-216 (857)
428 COG0630 VirB11 Type IV secreto 87.6 0.63 1.4E-05 44.3 3.9 73 100-183 110-182 (312)
429 PRK14969 DNA polymerase III su 87.5 1.8 3.8E-05 44.6 7.3 19 141-159 39-57 (527)
430 PRK06647 DNA polymerase III su 87.3 3.3 7.2E-05 42.9 9.1 19 141-159 39-57 (563)
431 PRK09376 rho transcription ter 87.2 1 2.2E-05 43.8 5.0 42 125-167 153-195 (416)
432 PF08423 Rad51: Rad51; InterP 87.2 0.62 1.3E-05 43.0 3.5 51 131-181 26-82 (256)
433 PF13555 AAA_29: P-loop contai 87.2 0.32 6.9E-06 33.6 1.2 16 141-156 24-39 (62)
434 PRK11634 ATP-dependent RNA hel 87.2 4.1 8.9E-05 43.0 9.9 96 303-402 46-155 (629)
435 PF10412 TrwB_AAD_bind: Type I 87.2 0.55 1.2E-05 46.3 3.3 45 141-188 16-60 (386)
436 KOG1806 DEAD box containing he 87.0 1 2.2E-05 48.3 5.2 72 120-194 735-806 (1320)
437 cd01128 rho_factor Transcripti 86.8 0.86 1.9E-05 41.8 4.2 26 141-167 17-42 (249)
438 TIGR03754 conj_TOL_TraD conjug 86.8 1.4 3E-05 46.0 6.0 53 141-196 181-235 (643)
439 TIGR01389 recQ ATP-dependent D 86.8 4.3 9.4E-05 42.6 10.0 81 303-386 31-111 (591)
440 PRK08533 flagellar accessory p 86.7 1.2 2.5E-05 40.5 5.0 51 141-195 25-75 (230)
441 KOG0733 Nuclear AAA ATPase (VC 86.5 0.74 1.6E-05 46.7 3.7 54 98-156 506-561 (802)
442 PRK14950 DNA polymerase III su 86.4 2.6 5.7E-05 44.1 8.0 19 141-159 39-57 (585)
443 COG4185 Uncharacterized protei 86.4 0.48 1E-05 39.4 2.0 38 142-186 4-41 (187)
444 PF10593 Z1: Z1 domain; Inter 86.4 2.1 4.5E-05 39.0 6.4 77 352-441 110-191 (239)
445 TIGR02868 CydC thiol reductant 86.4 1.1 2.4E-05 46.4 5.2 29 141-171 362-390 (529)
446 TIGR02639 ClpA ATP-dependent C 86.3 1.7 3.7E-05 46.9 6.7 21 137-157 200-220 (731)
447 cd01127 TrwB Bacterial conjuga 86.3 0.78 1.7E-05 45.7 3.9 43 141-186 43-85 (410)
448 PLN03187 meiotic recombination 86.2 1.2 2.5E-05 42.9 4.9 41 140-180 126-169 (344)
449 PRK09112 DNA polymerase III su 86.2 1.7 3.6E-05 42.2 6.0 17 141-157 46-62 (351)
450 TIGR02788 VirB11 P-type DNA tr 86.1 0.76 1.6E-05 43.8 3.6 16 141-156 145-160 (308)
451 PRK10590 ATP-dependent RNA hel 86.1 6.4 0.00014 39.8 10.5 69 330-402 77-155 (456)
452 TIGR03819 heli_sec_ATPase heli 86.0 0.85 1.8E-05 44.0 3.9 54 125-183 164-217 (340)
453 PRK04537 ATP-dependent RNA hel 85.9 4 8.6E-05 42.6 9.0 70 329-402 85-165 (572)
454 COG1111 MPH1 ERCC4-like helica 85.9 10 0.00022 37.9 11.0 161 303-474 32-205 (542)
455 KOG1513 Nuclear helicase MOP-3 85.9 1.1 2.5E-05 46.7 4.7 140 124-269 265-453 (1300)
456 PRK14971 DNA polymerase III su 85.8 2.9 6.3E-05 43.9 7.9 45 99-159 13-58 (614)
457 COG0552 FtsY Signal recognitio 85.7 0.77 1.7E-05 43.2 3.3 58 141-204 140-199 (340)
458 KOG0338 ATP-dependent RNA heli 85.7 3.5 7.7E-05 41.0 7.7 72 327-402 251-333 (691)
459 cd03221 ABCF_EF-3 ABCF_EF-3 E 85.6 2 4.3E-05 35.7 5.5 24 141-166 27-50 (144)
460 PF00270 DEAD: DEAD/DEAH box h 85.6 8.4 0.00018 32.5 9.7 97 302-402 16-125 (169)
461 PLN00020 ribulose bisphosphate 85.6 0.84 1.8E-05 43.9 3.5 16 141-156 149-164 (413)
462 KOG2170 ATPase of the AAA+ sup 85.5 1.4 3.1E-05 40.8 4.8 19 143-161 113-131 (344)
463 TIGR03881 KaiC_arch_4 KaiC dom 85.5 1.4 3.1E-05 39.8 5.0 50 141-194 21-70 (229)
464 PRK14953 DNA polymerase III su 85.4 7.4 0.00016 39.6 10.4 17 245-261 117-133 (486)
465 COG1126 GlnQ ABC-type polar am 85.1 1.1 2.4E-05 39.4 3.8 29 141-171 29-57 (240)
466 PRK09183 transposase/IS protei 85.1 1 2.2E-05 41.7 3.8 46 135-186 99-144 (259)
467 COG4626 Phage terminase-like p 84.8 2.2 4.8E-05 43.1 6.1 73 124-196 62-143 (546)
468 PF01935 DUF87: Domain of unkn 84.8 1 2.3E-05 40.7 3.7 42 141-184 24-65 (229)
469 PRK07993 DNA polymerase III su 84.8 1.9 4.2E-05 41.4 5.7 36 124-159 3-43 (334)
470 KOG0339 ATP-dependent RNA heli 84.7 8.4 0.00018 38.4 9.7 72 327-402 294-376 (731)
471 COG0467 RAD55 RecA-superfamily 84.5 1.6 3.4E-05 40.4 4.9 52 141-196 24-75 (260)
472 cd00984 DnaB_C DnaB helicase C 84.4 1.6 3.4E-05 39.9 4.8 44 141-186 14-60 (242)
473 KOG0744 AAA+-type ATPase [Post 84.3 1.8 4E-05 40.5 4.9 25 140-165 177-201 (423)
474 PRK04837 ATP-dependent RNA hel 84.1 10 0.00022 38.0 10.8 70 329-402 84-163 (423)
475 COG1125 OpuBA ABC-type proline 84.0 1.4 3E-05 39.9 3.9 29 141-171 28-56 (309)
476 KOG0745 Putative ATP-dependent 83.7 0.8 1.7E-05 44.5 2.5 17 141-157 227-243 (564)
477 PRK06871 DNA polymerase III su 83.4 1.7 3.6E-05 41.5 4.5 35 125-159 4-43 (325)
478 PRK06090 DNA polymerase III su 83.3 2.1 4.6E-05 40.7 5.2 36 124-159 4-44 (319)
479 PF13207 AAA_17: AAA domain; P 83.2 0.64 1.4E-05 37.1 1.4 14 143-156 2-15 (121)
480 KOG2228 Origin recognition com 83.0 5 0.00011 38.0 7.2 22 135-156 44-65 (408)
481 TIGR02237 recomb_radB DNA repa 82.7 1.5 3.2E-05 39.0 3.7 38 140-180 12-49 (209)
482 COG0606 Predicted ATPase with 82.5 0.68 1.5E-05 45.7 1.5 26 130-156 189-214 (490)
483 TIGR02640 gas_vesic_GvpN gas v 82.5 0.71 1.5E-05 42.8 1.7 25 131-157 14-38 (262)
484 PRK05800 cobU adenosylcobinami 82.5 11 0.00025 32.2 8.9 93 141-265 2-94 (170)
485 PF09439 SRPRB: Signal recogni 82.4 0.9 1.9E-05 39.2 2.1 21 141-161 4-24 (181)
486 PRK06067 flagellar accessory p 82.3 2.6 5.6E-05 38.3 5.2 51 141-195 26-76 (234)
487 TIGR00763 lon ATP-dependent pr 82.2 3.2 7E-05 45.1 6.7 16 141-156 348-363 (775)
488 TIGR03880 KaiC_arch_3 KaiC dom 81.9 2.6 5.7E-05 38.0 5.1 50 141-194 17-66 (224)
489 TIGR02655 circ_KaiC circadian 81.8 1.9 4.1E-05 44.0 4.5 61 131-195 251-314 (484)
490 PHA00012 I assembly protein 81.7 3.5 7.7E-05 38.9 5.8 25 143-167 4-28 (361)
491 PLN02165 adenylate isopentenyl 81.7 1.1 2.4E-05 42.7 2.5 23 136-158 39-61 (334)
492 PF01078 Mg_chelatase: Magnesi 81.6 0.65 1.4E-05 40.9 1.0 26 130-156 13-38 (206)
493 TIGR00416 sms DNA repair prote 81.5 3.6 7.8E-05 41.5 6.3 50 141-194 95-144 (454)
494 PF03969 AFG1_ATPase: AFG1-lik 81.5 3.5 7.7E-05 40.1 6.1 49 141-195 63-111 (362)
495 PRK13700 conjugal transfer pro 81.5 1.4 3E-05 46.3 3.4 73 109-187 157-229 (732)
496 PF13238 AAA_18: AAA domain; P 81.3 0.82 1.8E-05 36.8 1.4 14 143-156 1-14 (129)
497 KOG1132 Helicase of the DEAD s 81.3 23 0.00049 38.1 11.9 25 248-272 461-492 (945)
498 KOG3089 Predicted DEAD-box-con 81.1 1.9 4.1E-05 37.7 3.5 35 223-257 196-230 (271)
499 KOG2373 Predicted mitochondria 81.1 1.8 3.8E-05 40.9 3.5 55 133-190 264-323 (514)
500 cd00544 CobU Adenosylcobinamid 81.0 2.5 5.4E-05 36.2 4.3 45 143-193 2-46 (169)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-73 Score=509.87 Aligned_cols=351 Identities=31% Similarity=0.500 Sum_probs=321.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
....+|.++++.|+++++... .|++.||+||+++||.++.| +|+|+.|.||||||.+|++||++++....+.+.+||
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g--~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lV 134 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGG--RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALV 134 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCC--CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEE
Confidence 346789999999999999987 89999999999999999999 999999999999999999999999988888899999
Q ss_pred EecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEEEEEcC
Q 011667 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDE 255 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDE 255 (480)
++||||||.|+.+.+..++...|+++.+++||..... ....+...++|+|+|||+|++++.+ +.+.+..++++|+||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 9999999999999999999999999999988875543 3344556799999999999999995 678899999999999
Q ss_pred chhhhhh------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHH
Q 011667 256 ADHMLDE------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317 (480)
Q Consensus 256 ah~l~~~------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 317 (480)
||+++++ +++||||++..+..+....+.+|..+.+.....+.+.+.|.|..++.. .|..+|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k-~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK-DKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccc-ccchhH
Confidence 9999983 899999999999999999999999999999999999999999988755 344455
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 397 (480)
+.++.+. .+..+||||++...+..++-.|+..|+.+..+||.|++..|.-.++.|++|.++||||||+++||+|+|+|
T Consensus 292 V~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 292 VYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 5544444 45889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
++|||||.| .+..+|+||+||+||+|++|.+|+|++. .|...+.+|+..++....+.+
T Consensus 370 d~VVNyDiP--------~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 370 DVVVNYDIP--------THSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred eEEEecCCC--------CcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCccC
Confidence 999999999 8899999999999999999999999997 677788999999999887755
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-70 Score=527.20 Aligned_cols=357 Identities=33% Similarity=0.539 Sum_probs=320.3
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC------CCCCCe
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP------NLKAPQ 173 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~------~~~~~~ 173 (480)
..|+++++++++.+.++. .||..|||||.++||.++.| +|++..|.|||||||+|++|++.++.. ...+++
T Consensus 91 ~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~G--rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSG--RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccC--CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 399999999999999987 89999999999999999999 999999999999999999999999875 456889
Q ss_pred EEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEE
Q 011667 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (480)
Q Consensus 174 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 253 (480)
+|||+||||||.|+.+.+..++..+.++..|++|+..... ....+..+.+|+|+|||||.++++.+.+.++++.++|+
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~--Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP--QLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH--HHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 9999999999999999999999999998999998886654 44555668999999999999999999999999999999
Q ss_pred cCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeecccc--ccccccEEEEEEcCchhH
Q 011667 254 DEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE--LSLESVKQYKVYCPDELA 312 (480)
Q Consensus 254 DEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 312 (480)
||||+|++ |++++|||+|.++..++..++.+|..+.+.... ....++.|....++ ...
T Consensus 246 DEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~ 324 (519)
T KOG0331|consen 246 DEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETA 324 (519)
T ss_pred ccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHH
Confidence 99999987 489999999999999999999999988887553 44557777777776 777
Q ss_pred HHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 313 KVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 313 k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
|...+..+|.... +..+++||||++++.|+.++..|...++++..|||+.+|.+|..+++.|++|++.||||||+++||
T Consensus 325 K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 325 KLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 8888777666654 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHHHH
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFK 471 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 471 (480)
||+|+|++|||||+| .++++|+||+|||||+|+.|.+++|++.. +......+.+.++-....+++....+.
T Consensus 405 LDi~dV~lVInydfP--------~~vEdYVHRiGRTGRa~~~G~A~tfft~~-~~~~a~~l~~~l~e~~q~v~~~l~~~~ 475 (519)
T KOG0331|consen 405 LDVPDVDLVINYDFP--------NNVEDYVHRIGRTGRAGKKGTAITFFTSD-NAKLARELIKVLREAGQTVPPDLLEYA 475 (519)
T ss_pred CCCccccEEEeCCCC--------CCHHHHHhhcCccccCCCCceEEEEEeHH-HHHHHHHHHHHHHHccCCCChHHHHHH
Confidence 999999999999999 89999999999999999999999999964 566667777777766666765555443
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-70 Score=508.29 Aligned_cols=341 Identities=32% Similarity=0.475 Sum_probs=301.6
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQAL 175 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~l 175 (480)
..+|.+++|+.++++++.. +||..|||||..+||..|-| +|++.+|.||||||.+|++|+|.++.-. ....++|
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallg--kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLG--KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhc--chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEE
Confidence 5689999999999999986 99999999999999999999 9999999999999999999999997532 3456899
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEEEEEc
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYD 254 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViD 254 (480)
||||||+|+.|++...++++..+.+.+..++||-+...+. ..+...++|+|+|||||.+|+.+ ..+.++++.++|+|
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE--~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQE--AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHH--HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 9999999999999999999999999988888887655443 33444699999999999999987 46889999999999
Q ss_pred Cchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc-h-hHHH
Q 011667 255 EADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD-E-LAKV 314 (480)
Q Consensus 255 Eah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~k~ 314 (480)
|||+|++ |+++||||++..+..++...+.+|..+++.........+.|.|+.+.. . ..+-
T Consensus 335 EADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccH
Confidence 9999997 599999999999999999999999999999998888888888775542 1 1122
Q ss_pred HHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 011667 315 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 394 (480)
Q Consensus 315 ~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 394 (480)
.++..++... -..++|||+.+++.|+++.-.|.-+|+++.-+||.++|.+|...++.|++++++||||||+++|||||
T Consensus 415 a~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 415 AMLASLITRT--FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHHHh--cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 2222222222 26789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHH
Q 011667 395 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERY 455 (480)
Q Consensus 395 ~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~ 455 (480)
++|.+||||.+| .+...|+||+|||+|+|+.|.+++|+-+. ++.+++.|-+.
T Consensus 493 ~gV~tVINy~mP--------~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 493 EGVQTVINYAMP--------KTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred cceeEEEeccCc--------hhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhh
Confidence 999999999999 89999999999999999999999999865 67777777655
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-69 Score=463.24 Aligned_cols=356 Identities=37% Similarity=0.638 Sum_probs=331.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEE
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~l 175 (480)
.....+|++++|.++++++++. +||++|+.+|++||+.|+.| +|++++|..|+|||.+|.+.+++.+.-..+..++|
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkG--rdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKG--RDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcc--cceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 3457899999999999999997 99999999999999999999 99999999999999999999999998877778999
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcC
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 255 (480)
|++|||+||.|+.+.+..++...++.++.++|+.+... ..+.+..+.+++.+|||++++++..+.+....++++|+||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge--dikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE--DIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccch--hhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999888887775433 2333446899999999999999999999999999999999
Q ss_pred chhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHH
Q 011667 256 ADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317 (480)
Q Consensus 256 ah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 317 (480)
||.|++ |++++|||+|.++.+....|+.+|..+.+.+.+.+.++++++++.+..++-|...|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 999987 48999999999999999999999999999999999999999999999999899998
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 397 (480)
.+ ++..+ ...+++||||++..++.+.+.|...++.+..+||+|++++|.+++.+|++|+.+|||+||+-+||+|+|.|
T Consensus 258 cd-LYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CD-LYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HH-Hhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 88 56655 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCH
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 467 (480)
++|||||+| ...+.|+||+||.||.|++|.++.|+.+ ++...++.|+++|...+.++|.+.
T Consensus 336 slviNYDLP--------~nre~YIHRIGRSGRFGRkGvainFVk~-~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 336 SLVINYDLP--------NNRELYIHRIGRSGRFGRKGVAINFVKS-DDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred EEEEecCCC--------ccHHHHhhhhccccccCCcceEEEEecH-HHHHHHHHHHHHHhhhcccccchh
Confidence 999999999 7889999999999999999999999975 578889999999999999998653
No 5
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-68 Score=477.97 Aligned_cols=381 Identities=46% Similarity=0.747 Sum_probs=349.7
Q ss_pred ccccccccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhh
Q 011667 84 SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLS 163 (480)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~ 163 (480)
..+... +++.|..+..+|++|+|.|+++++++. ++|.+|+.||..|+|.+|....+++|.++..|+|||.||.+.+|.
T Consensus 75 ~~vk~~-dpnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLs 152 (477)
T KOG0332|consen 75 SNVKLA-DPNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLS 152 (477)
T ss_pred hceeec-CCCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHH
Confidence 334444 588899999999999999999999997 999999999999999999998899999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-Cc
Q 011667 164 RVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KK 242 (480)
Q Consensus 164 ~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 242 (480)
++......|++++|+|||+||.|+.+.+.+.++..++...+.+.+..... ...-..+|+|+|||.+.+++.. ..
T Consensus 153 rvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-----G~~i~eqIviGTPGtv~Dlm~klk~ 227 (477)
T KOG0332|consen 153 RVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-----GNKLTEQIVIGTPGTVLDLMLKLKC 227 (477)
T ss_pred hcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-----CCcchhheeeCCCccHHHHHHHHHh
Confidence 99998889999999999999999999999999999888887776652221 1112358999999999999988 77
Q ss_pred cccCceEEEEEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEE
Q 011667 243 LGFSRLKILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 303 (480)
Q Consensus 243 ~~~~~~~~lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (480)
+.++.++++|+||||.|++ |+++||||+...+..++..+..+++.+.+..++..+.++.|+
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQl 307 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQL 307 (477)
T ss_pred hChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhh
Confidence 8899999999999999987 389999999999999999999999999999999999999999
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv 383 (480)
++.|.....|+..+.+ ++... ..+..||||.+++.|..++..|...|..+..+||+|...+|..++++|+.|..+|||
T Consensus 308 yv~C~~~~~K~~~l~~-lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLi 385 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVN-LYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLI 385 (477)
T ss_pred eeeccchhhHHHHHHH-HHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEE
Confidence 9999999999999988 66665 678999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceec
Q 011667 384 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463 (480)
Q Consensus 384 ~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~ 463 (480)
+|++++||||++.|++|||||+|...... .+++.|+||+|||||.|+.|.++.|+.+++++.++..|+++++..+.++
T Consensus 386 tTnV~ARGiDv~qVs~VvNydlP~~~~~~--pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 386 TTNVCARGIDVAQVSVVVNYDLPVKYTGE--PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred EechhhcccccceEEEEEecCCccccCCC--CCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 99999999999999999999999655443 6899999999999999999999999999999999999999999888888
Q ss_pred C-CCHHHHHHHHH
Q 011667 464 R-NSDEDFKAALK 475 (480)
Q Consensus 464 ~-~~~~~~~~~~~ 475 (480)
. ++++++++.++
T Consensus 464 ~~~d~~E~eki~~ 476 (477)
T KOG0332|consen 464 DPDDLDELEKIVK 476 (477)
T ss_pred CCccHHHHHHHhc
Confidence 7 88999988765
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-66 Score=522.83 Aligned_cols=347 Identities=37% Similarity=0.605 Sum_probs=313.4
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC--CCCCCeEEEE
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--NLKAPQALCI 177 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~--~~~~~~~lil 177 (480)
..|.++++++.+++++.+ .||..|||||.++||.++.| +|+++.|+||||||++|++|+++.+.. ......+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g--~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAG--RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEE
Confidence 689999999999999997 99999999999999999999 999999999999999999999999874 2222229999
Q ss_pred ecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCc
Q 011667 178 CPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 256 (480)
+||||||.|+++.+..++... ++.+.+++|+.+...+. ..+..+++|+|+|||||++++.++.+.++.+.++|+|||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~--~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI--EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH--HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999999988 78888888887655443 333336999999999999999999999999999999999
Q ss_pred hhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccc--cccccEEEEEEcCchhHHHHH
Q 011667 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL--SLESVKQYKVYCPDELAKVMV 316 (480)
Q Consensus 257 h~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~ 316 (480)
|+|++ |+++||||++..+..+...++.+|..+.+..... ....+.|.++.+.....|...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 99998 4999999999999999999999999888875555 788999999999877678888
Q ss_pred HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 011667 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 317 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
|..++ ... ...++||||+++..++.++..|...|+++..+||+|+|.+|.++++.|++|+.+||||||+++||||||+
T Consensus 264 L~~ll-~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 264 LLKLL-KDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHH-hcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 87744 333 3447999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcce
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 461 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~ 461 (480)
+++|||||+| .+++.|+||+|||||+|+.|.+++|+.+..+...+..+++.++..+.
T Consensus 342 v~~VinyD~p--------~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 342 VSHVINYDLP--------LDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred cceeEEccCC--------CCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999 89999999999999999999999999975578899999999877755
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9e-66 Score=479.61 Aligned_cols=371 Identities=28% Similarity=0.418 Sum_probs=326.0
Q ss_pred ccccccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhcc
Q 011667 86 IKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 86 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
......|...+.+..+|++.++|.++++.+.. .||..|+|||.++||..++. +|+|+.|.||||||++|++|++..+
T Consensus 231 ynis~kg~~lpnplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~--rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 231 YNISIKGGRLPNPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQN--RDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred eeeeecCCCCCccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhcc--CCeeeEEeccCCccccchhhHHHHH
Confidence 33445677778889999999999999998876 99999999999999999998 9999999999999999999998766
Q ss_pred CC---------CCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHH
Q 011667 166 DP---------NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKK 236 (480)
Q Consensus 166 ~~---------~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 236 (480)
.. ...++.++|+.|||+|++|+.++-.+++..+++++..++|+-+...+. -.+..+|+|+|+||++|.+
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~--fqls~gceiviatPgrLid 385 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG--FQLSMGCEIVIATPGRLID 385 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh--hhhhccceeeecCchHHHH
Confidence 32 234789999999999999999999999999999998888888765543 3455589999999999999
Q ss_pred HHhcCccccCceEEEEEcCchhhhh-------------------------------------------hheeeeccccHH
Q 011667 237 WMSAKKLGFSRLKILVYDEADHMLD-------------------------------------------EVLLFSATFNET 273 (480)
Q Consensus 237 ~l~~~~~~~~~~~~lViDEah~l~~-------------------------------------------~~~~~SAT~~~~ 273 (480)
.|.+..+.++.+.+||+||||+|++ |++.||||+|+.
T Consensus 386 ~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ 465 (673)
T KOG0333|consen 386 SLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPA 465 (673)
T ss_pred HHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChH
Confidence 9999888999999999999999987 389999999999
Q ss_pred HHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC
Q 011667 274 VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 353 (480)
+..++..++.+|..+.+.....+.+.+.|.++.+.... +...|...+... ...++|||+|+++.|+.+++.|.+.|+
T Consensus 466 verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~ 542 (673)
T KOG0333|consen 466 VERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGY 542 (673)
T ss_pred HHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccc
Confidence 99999999999999999999888889999888876654 477777744443 467999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc
Q 011667 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 433 (480)
Q Consensus 354 ~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~ 433 (480)
++..|||+-+|++|..+++.|++|..+||||||+++||||||+|++|||||++ +++++|.||||||||+|+.
T Consensus 543 ~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma--------ksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 543 KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA--------KSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchh--------hhHHHHHHHhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred eeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHHHHH
Q 011667 434 GVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKA 472 (480)
Q Consensus 434 g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 472 (480)
|.+++|+++.+...+++..+......-.-.|++.-.+.+
T Consensus 615 GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 615 GTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred ceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 999999999887766665555554554445544444333
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-65 Score=452.79 Aligned_cols=356 Identities=32% Similarity=0.466 Sum_probs=312.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
...+|+.|||++++.+.+.. +|+++|||+|..+||.||.| +|+|.+|.||||||++|.+|+++++.....+..++|+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeG--rdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEG--RDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcc--cccccccccCCCcchhhhHHHHHhhccCCCcceEEEe
Confidence 46789999999999999987 99999999999999999999 9999999999999999999999999999889999999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC----ccccCceEEEEE
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK----KLGFSRLKILVY 253 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~----~~~~~~~~~lVi 253 (480)
+|||+||.|+.+.|..++...++++..++|+...-. ....+...++++|+||||+.+++..+ ...+.+++++|+
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~--qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM--QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh--hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 999999999999999999999999999988876544 33455567999999999999999875 245789999999
Q ss_pred cCchhhhh------------------hheeeeccccHHHHHHHHHHhcc--cceeeeccccccccccEEEEEEcCchhHH
Q 011667 254 DEADHMLD------------------EVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDELAK 313 (480)
Q Consensus 254 DEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 313 (480)
||||+++. |.++||||+++.+..+...-... .............+.+.+.|+.++.. .+
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~-vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID-VK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh-hh
Confidence 99999986 58999999998887765544443 22333344556677888889988765 44
Q ss_pred HHHHHHHHHHhcc-cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 011667 314 VMVIRDRIFELGE-KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 392 (480)
Q Consensus 314 ~~~l~~~l~~~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gl 392 (480)
-.+++..+....+ ..+.++||+++..+|+.++..|..+++.+..+|+.|+|.+|...+.+|+++..+||||||+++||+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 4555555555544 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHH
Q 011667 393 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468 (480)
Q Consensus 393 di~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 468 (480)
|||.|++|||||.| +++.+|+||+||++|+|+.|.+++|++. .|...+..|++..|..+++.+-..+
T Consensus 319 DIP~V~LVvN~diP--------r~P~~yiHRvGRtARAGR~G~aiSivt~-rDv~l~~aiE~~igkKl~e~~~~~~ 385 (442)
T KOG0340|consen 319 DIPTVELVVNHDIP--------RDPKDYIHRVGRTARAGRKGMAISIVTQ-RDVELLQAIEEEIGKKLTEYNKVQR 385 (442)
T ss_pred CCCceeEEEecCCC--------CCHHHHHHhhcchhcccCCcceEEEech-hhHHHHHHHHHHHhcccccccccch
Confidence 99999999999999 8999999999999999999999999995 5677889999999999999874433
No 9
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-64 Score=443.11 Aligned_cols=354 Identities=37% Similarity=0.609 Sum_probs=322.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
..-..|+++.|.++++.++.+ .||.+|+|+|.++||.+|.| +|+++.|..|+|||.+|++|+++.+......-+++|
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtG--rdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~i 158 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTG--RDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAII 158 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecc--hhhhhhccCCCCCccceechhhhhcCccccceeEEE
Confidence 345689999999999999997 89999999999999999999 999999999999999999999999998888889999
Q ss_pred EecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCc
Q 011667 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 256 (480)
++|||+||.|+.+.+.+++.++++.+....|+++.. ....+.....+++|+||||++++...+.-.++++.++|+|||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 999999999999999999999998887777766543 344566678999999999999999998889999999999999
Q ss_pred hhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHH
Q 011667 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 318 (480)
Q Consensus 257 h~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 318 (480)
|.+++ |++++|||+|-.+..+..+++.+|..+..- ++.++.++.|+|.++. +..|+..|-
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~-e~qKvhCLn 314 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVE-ERQKVHCLN 314 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeec-hhhhhhhHH
Confidence 99987 489999999999999999999999887754 5678889999998875 457777766
Q ss_pred HHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 011667 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 398 (480)
Q Consensus 319 ~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 398 (480)
.++.++ ...+.||||||...++.+++.+.++|+.|..+|+.|.|+.|.+++..|++|.++.|||||.+.||+|++.++
T Consensus 315 tLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 315 TLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 644333 556889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHH
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 468 (480)
+|||||.| +++++|+||+||+||.|.-|.+|.|++- +++..+.+|+..||.+|..+|+..+
T Consensus 393 vVINFDfp--------k~aEtYLHRIGRsGRFGhlGlAInLity-edrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 393 VVINFDFP--------KNAETYLHRIGRSGRFGHLGLAINLITY-EDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred EEEecCCC--------CCHHHHHHHccCCccCCCcceEEEEEeh-hhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999 8999999999999999999999999985 5678889999999999999996544
No 10
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-64 Score=469.26 Aligned_cols=350 Identities=31% Similarity=0.474 Sum_probs=310.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC----CCCCCe
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAPQ 173 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~----~~~~~~ 173 (480)
.+..|.+++|+...+++|.. .+|..||.+|+.+||..|.| +|++..|.||||||++|++|+|+++.. ...|.-
T Consensus 67 ~~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G--~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlG 143 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQG--HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLG 143 (758)
T ss_pred hhhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccC--cccccccccCCCceeeehHHHHHHHHHcCCCCCCCce
Confidence 36789999999999999997 89999999999999999999 999999999999999999999998742 234667
Q ss_pred EEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEEEE
Q 011667 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILV 252 (480)
Q Consensus 174 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lV 252 (480)
+|||+|||+||.|+++.+.+.+.++.+....++||...... .....+.+|+|||||||+.|+..+ .+..+++.++|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E---~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFE---LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHH---HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 99999999999999999999999999998888888753321 122235789999999999999875 56778999999
Q ss_pred EcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccc--cccccccEEEEEEcCchhH
Q 011667 253 YDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE--ELSLESVKQYKVYCPDELA 312 (480)
Q Consensus 253 iDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 312 (480)
+||||+|++ |+++||||.+..+.++++..+.+|..+.+... ..++..+.|+|+.++. ..
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~ 299 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-ED 299 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hh
Confidence 999999987 59999999999999999999999988877643 4677889999988875 46
Q ss_pred HHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 313 k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
|+.+|...+... ...++|||+.|++++..++..++++ |+.+..+||.|+|..|..++..|......||+|||+++|
T Consensus 300 Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aR 377 (758)
T KOG0343|consen 300 KIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAAR 377 (758)
T ss_pred HHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhc
Confidence 888877744433 5678999999999999999999876 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCC
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 465 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~ 465 (480)
|+|+|.|+|||++|+| .++.+|+||+||++|.+..|.+++++++.++..++..+++.. +++.++..
T Consensus 378 GLDFpaVdwViQ~DCP--------edv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i 443 (758)
T KOG0343|consen 378 GLDFPAVDWVIQVDCP--------EDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKI 443 (758)
T ss_pred cCCCcccceEEEecCc--------hhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhcc
Confidence 9999999999999999 899999999999999999999999999988788888888765 77777663
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-62 Score=487.43 Aligned_cols=357 Identities=29% Similarity=0.456 Sum_probs=306.3
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-------CC
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-------LK 170 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-------~~ 170 (480)
...+|++++|++.+++++.. +||..|+|+|.++||.++.| +|++++||||||||++|++|+++.+... ..
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g--~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAG--RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 35789999999999999986 99999999999999999999 9999999999999999999999877432 23
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEE
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 250 (480)
++++|||+||++||.|+++.+..+....++.+...+++.+... .......+++|+|+||++|.+++..+.+.+.++++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~--~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~ 160 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK--QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQV 160 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH--HHHHhcCCCCEEEECHHHHHHHHHcCCcccccccE
Confidence 5789999999999999999999999888988888777654332 12223346899999999999999988888999999
Q ss_pred EEEcCchhhhhh--------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch
Q 011667 251 LVYDEADHMLDE--------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310 (480)
Q Consensus 251 lViDEah~l~~~--------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
||+||||++++. .++||||++..+..+....+.+|..+.+.........+.+.+... ..
T Consensus 161 lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~ 239 (423)
T PRK04837 161 VVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SN 239 (423)
T ss_pred EEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CH
Confidence 999999998752 589999999999988888888888777766555555666655544 34
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..+...+...+... ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++|
T Consensus 240 ~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 240 EEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred HHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 55666666544332 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHHH
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDF 470 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 470 (480)
|||+|++++|||||+| .++..|+||+||+||+|+.|.+++|+.+. +...+..++++++..++..+...+++
T Consensus 318 GiDip~v~~VI~~d~P--------~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 388 (423)
T PRK04837 318 GLHIPAVTHVFNYDLP--------DDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIETYIGHSIPVSKYDSDAL 388 (423)
T ss_pred CCCccccCEEEEeCCC--------CchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHHHhCCCCCCccCChhhh
Confidence 9999999999999999 88999999999999999999999999864 56678889999999987776555444
Q ss_pred H
Q 011667 471 K 471 (480)
Q Consensus 471 ~ 471 (480)
.
T Consensus 389 ~ 389 (423)
T PRK04837 389 L 389 (423)
T ss_pred h
Confidence 4
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.1e-63 Score=500.90 Aligned_cols=367 Identities=29% Similarity=0.431 Sum_probs=312.0
Q ss_pred cCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC--
Q 011667 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-- 168 (480)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-- 168 (480)
.+...+.+..+|+++++++.++++|.+ +||..|||+|.++||.+++| +|+|++||||||||++|++|++.++...
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G--~dvI~~ApTGSGKTlaylLP~l~~i~~~~~ 197 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSG--RDMIGIAETGSGKTLAFLLPAIVHINAQPL 197 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEEeCCCChHHHHHHHHHHHHHHhccc
Confidence 456677889999999999999999986 99999999999999999999 9999999999999999999999876432
Q ss_pred ---CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcccc
Q 011667 169 ---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (480)
Q Consensus 169 ---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 245 (480)
..++.+|||+||++||.|+.+.+.+++...++.+.+++++.....+ ......+++|+|+||++|.+++......+
T Consensus 198 ~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q--~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 198 LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ--IYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH--HHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 2467899999999999999999999998888888787777643322 22233468999999999999999888889
Q ss_pred CceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhc-ccceeeecccc-ccccccEEEEE
Q 011667 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVK-DYNQLFVKKEE-LSLESVKQYKV 305 (480)
Q Consensus 246 ~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 305 (480)
.++++|||||||+|++ |+++||||++..+..+...++. .+..+.+.... .....+.+.+.
T Consensus 276 ~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~ 355 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVF 355 (545)
T ss_pred hhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEE
Confidence 9999999999999886 3789999999999988888775 45555554333 22345666655
Q ss_pred EcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011667 306 YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 385 (480)
Q Consensus 306 ~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T 385 (480)
.+. ...+...+...+........++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 356 ~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT 434 (545)
T PTZ00110 356 VVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434 (545)
T ss_pred EEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc
Confidence 544 3455666666555554467899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCC
Q 011667 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 465 (480)
Q Consensus 386 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~ 465 (480)
++++||||+|++++||+||+| .++++|+||+||+||+|+.|.|++|+++. +......+.+.+.....++|+
T Consensus 435 dv~~rGIDi~~v~~VI~~d~P--------~s~~~yvqRiGRtGR~G~~G~ai~~~~~~-~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 435 DVASRGLDVKDVKYVINFDFP--------NQIEDYVHRIGRTGRAGAKGASYTFLTPD-KYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred chhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccccCCCCceEEEEECcc-hHHHHHHHHHHHHHccCCCCH
Confidence 999999999999999999999 89999999999999999999999999864 667788888888888888887
Q ss_pred CHHHHHH
Q 011667 466 SDEDFKA 472 (480)
Q Consensus 466 ~~~~~~~ 472 (480)
.+..+..
T Consensus 506 ~l~~~~~ 512 (545)
T PTZ00110 506 ELEKLSN 512 (545)
T ss_pred HHHHHHH
Confidence 6666643
No 13
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.6e-63 Score=459.40 Aligned_cols=350 Identities=30% Similarity=0.418 Sum_probs=300.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC----CCC
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKA 171 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~----~~~ 171 (480)
......|+++.|++..++++.. +||..+|++|..+|+.++.| +|+++.|.||+|||++|++|+++.+... ..+
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~g--kDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~ 154 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEG--KDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNG 154 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCC--ccceeeeccCCCceeeehhHHHHHHHhcccCCCCC
Confidence 3456789999999999999997 99999999999999999999 9999999999999999999999987532 245
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceE
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLK 249 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~ 249 (480)
..++|+||||+||.|++.+++++..++ ++.+..++|+..... ...++..+++|+|+|||||.+|+++. .+.+.+++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~--e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV--EADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH--HHHHhhccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 569999999999999999999998888 788888888775543 33344448999999999999999984 45677889
Q ss_pred EEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcc-cceeee--ccccccccccEEEEEEcC
Q 011667 250 ILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKD-YNQLFV--KKEELSLESVKQYKVYCP 308 (480)
Q Consensus 250 ~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~ 308 (480)
++|+||||++++ |+++||||.+..+++++...+.. +..+.+ .....+...+.|.++.++
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999999999987 48999999999999999888765 444433 234567778999888887
Q ss_pred chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 309 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
.... +..+...+.+.. ...++||||+|...+..++..|+...++|..+||+++|..|..++.+|+..+..||||||++
T Consensus 313 ~~~~-f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVa 390 (543)
T KOG0342|consen 313 SDSR-FSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVA 390 (543)
T ss_pred ccch-HHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchh
Confidence 6655 555555444443 44899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 389 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
+||+|+|+|++||+||+| .++++|+||+|||||.|..|.+++|+.+ ++..+++.+. ..++++.+
T Consensus 391 ARGlD~P~V~~VvQ~~~P--------~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK---~lpl~~~e 454 (543)
T KOG0342|consen 391 ARGLDIPDVDWVVQYDPP--------SDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLK---KLPLEEFE 454 (543)
T ss_pred hccCCCCCceEEEEeCCC--------CCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHh---hCCCcccC
Confidence 999999999999999999 8999999999999999999999988885 5677777777 45555554
No 14
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-62 Score=459.68 Aligned_cols=347 Identities=29% Similarity=0.463 Sum_probs=290.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC------CCC
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD------PNL 169 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~------~~~ 169 (480)
+..-..|.++||++.+++.|...+++..||.+|+++||.+|.| +|++|.++||||||++|++|+++.+. ...
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~g--rD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs 209 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEG--RDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRS 209 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcC--cceEEEcCCCCcccHHHHHHHHHHHHhcCcccccc
Confidence 3445689999999999999999999999999999999999999 99999999999999999999998874 234
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeE-eecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCc
Q 011667 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSEC-AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSR 247 (480)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~ 247 (480)
.|+-+|||+||||||.|+++.+.++...+...+.+ ++||. .......++..+++|+|+|||||++++.+ ..+.+++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE--kkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE--KKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc--ccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 67889999999999999999999998776654444 34443 34456778888999999999999999998 5678999
Q ss_pred eEEEEEcCchhhhh-------------------------------hheeeeccccHHHHHHHHHHhcccceeeeccc---
Q 011667 248 LKILVYDEADHMLD-------------------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE--- 293 (480)
Q Consensus 248 ~~~lViDEah~l~~-------------------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--- 293 (480)
+++||+||||++++ |.+++|||++..+..+....+.+|..|.....
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 99999999999987 37899999999999999999999887762110
Q ss_pred ----------------------cccccccEEEEEEcCchhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHH
Q 011667 294 ----------------------ELSLESVKQYKVYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALK 349 (480)
Q Consensus 294 ----------------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~ 349 (480)
...++.+.|.|..++....- ..|...+.... +...++|||+.+.+.++.-+.+|.
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRL-V~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRL-VALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhH-HHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHH
Confidence 12334566777777765433 23333333322 244589999999999999998886
Q ss_pred h----------------------CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC
Q 011667 350 D----------------------FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 407 (480)
Q Consensus 350 ~----------------------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~ 407 (480)
. .+.++..+||+|.|++|..+++.|......||+|||+++||||+|+|++||+||+|
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P- 525 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP- 525 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC-
Confidence 4 24568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHh
Q 011667 408 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF 456 (480)
Q Consensus 408 ~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l 456 (480)
.++.+|+||+|||+|+|.+|.+++|+.+.+.. +++.++..-
T Consensus 526 -------~s~adylHRvGRTARaG~kG~alLfL~P~Eae-y~~~l~~~~ 566 (708)
T KOG0348|consen 526 -------FSTADYLHRVGRTARAGEKGEALLFLLPSEAE-YVNYLKKHH 566 (708)
T ss_pred -------CCHHHHHHHhhhhhhccCCCceEEEecccHHH-HHHHHHhhc
Confidence 89999999999999999999999999987544 777666543
No 15
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-63 Score=464.26 Aligned_cols=347 Identities=25% Similarity=0.416 Sum_probs=288.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC------
Q 011667 95 PYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------ 168 (480)
Q Consensus 95 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~------ 168 (480)
.......|..+.++.+++.+|.. +||..||+||..+||.+..|. .|++..|.||||||+||.+||+..+...
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk-~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGK-VDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccc-hhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 34457789999999999999987 999999999999999999984 7999999999999999999999965321
Q ss_pred -----CCCCe--EEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC
Q 011667 169 -----LKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK 241 (480)
Q Consensus 169 -----~~~~~--~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 241 (480)
...++ +||++|||+||.|+.+.+..++...++++..++||-....+. ..+...++|+|+||||||.++..+
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQq--RlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQ--RLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHH--HHHhcCCCEEEecchHHHHHHHhh
Confidence 12344 999999999999999999999999999999988887654432 334447999999999999999886
Q ss_pred cc---ccCceEEEEEcCchhhhh-----------------------hheeeeccccHH---------------------H
Q 011667 242 KL---GFSRLKILVYDEADHMLD-----------------------EVLLFSATFNET---------------------V 274 (480)
Q Consensus 242 ~~---~~~~~~~lViDEah~l~~-----------------------~~~~~SAT~~~~---------------------~ 274 (480)
.. .|.+++++|+||||+|+. |+++||||++-. +
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 54 577899999999999976 599999998621 1
Q ss_pred HHHHHH--HhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC
Q 011667 275 KNFVTR--IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG 352 (480)
Q Consensus 275 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~ 352 (480)
+.++.. +...|..+...+...+...+....+.|+..+..+.. . +-+....|++|||||+++.+.+|+-+|+..+
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~yl-y---Yfl~ryPGrTlVF~NsId~vKRLt~~L~~L~ 487 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYL-Y---YFLTRYPGRTLVFCNSIDCVKRLTVLLNNLD 487 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeE-E---EEEeecCCceEEEechHHHHHHHHHHHhhcC
Confidence 222221 234556666666666666666666666543332221 1 1122357999999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC
Q 011667 353 YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432 (480)
Q Consensus 353 ~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~ 432 (480)
+....+|+.|.|.+|.+.+++|++....||||||+++||||||+|+|||||..| ++.+.|+||.|||+|++.
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVP--------rtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVP--------RTSEIYVHRSGRTARANS 559 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecC--------CccceeEecccccccccC
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred ceeEEEEeeCCccHHHHHHHHHHhCC
Q 011667 433 KGVVFNLLMDGDDMIIMEKIERYFDI 458 (480)
Q Consensus 433 ~g~~~~l~~~~~~~~~~~~i~~~l~~ 458 (480)
.|..++|+.+. +...+..+++.|..
T Consensus 560 ~Gvsvml~~P~-e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 560 EGVSVMLCGPQ-EVGPLKKLCKTLKK 584 (731)
T ss_pred CCeEEEEeChH-HhHHHHHHHHHHhh
Confidence 99999999876 47777888888853
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-61 Score=488.42 Aligned_cols=365 Identities=27% Similarity=0.439 Sum_probs=309.7
Q ss_pred ccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC--
Q 011667 90 TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-- 167 (480)
Q Consensus 90 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-- 167 (480)
..|...+.+..+|+++++++.+++.+.. .||..|||+|.++||.++.| +|++++||||||||++|++|++.++..
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g--~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSG--RSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 3466677889999999999999999986 99999999999999999999 999999999999999999999987632
Q ss_pred -----CCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc
Q 011667 168 -----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK 242 (480)
Q Consensus 168 -----~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 242 (480)
...++++|||+||++||.|+.+.++.+....++...+.+++.....+ ......+++|+|+||++|.+++....
T Consensus 188 ~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q--~~~l~~~~~IiV~TPgrL~~~l~~~~ 265 (518)
T PLN00206 188 SGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ--LYRIQQGVELIVGTPGRLIDLLSKHD 265 (518)
T ss_pred cccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH--HHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 22567899999999999999999999988888877777776644322 12234468999999999999999888
Q ss_pred cccCceEEEEEcCchhhhh-----------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEE
Q 011667 243 LGFSRLKILVYDEADHMLD-----------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV 305 (480)
Q Consensus 243 ~~~~~~~~lViDEah~l~~-----------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
+.++++++|||||||+|++ |+++||||++..+..+...++.++..+.+.........+.+.+.
T Consensus 266 ~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~ 345 (518)
T PLN00206 266 IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAI 345 (518)
T ss_pred ccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEE
Confidence 8899999999999999876 48899999999999988888888877777665555556677766
Q ss_pred EcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011667 306 YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 384 (480)
Q Consensus 306 ~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~ 384 (480)
.+... .+...+.+.+........++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 346 ~~~~~-~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVa 424 (518)
T PLN00206 346 WVETK-QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVA 424 (518)
T ss_pred eccch-hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 66543 344455554444333456899999999999999999975 5899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 385 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 385 T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|++++||||+|++++||+||+| .++.+|+||+|||||.|..|.+++|+++. +...+..+.+.+......+|
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P--------~s~~~yihRiGRaGR~g~~G~ai~f~~~~-~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMP--------NTIKEYIHQIGRASRMGEKGTAIVFVNEE-DRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCC--------CCHHHHHHhccccccCCCCeEEEEEEchh-HHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999 89999999999999999999999999864 56677788888877777777
Q ss_pred CCHHH
Q 011667 465 NSDED 469 (480)
Q Consensus 465 ~~~~~ 469 (480)
..+..
T Consensus 496 ~~l~~ 500 (518)
T PLN00206 496 RELAN 500 (518)
T ss_pred HHHHh
Confidence 55444
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-60 Score=479.75 Aligned_cols=347 Identities=33% Similarity=0.503 Sum_probs=301.0
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.. +||..|+|+|.++||.++.| +|++++||||||||++|++|+++.+......+++||++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g--~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAG--KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEe
Confidence 4689999999999999986 99999999999999999999 99999999999999999999999987655567899999
Q ss_pred cCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
||++||.|+.+.++.++... ++.+..++|+.+...+ ......+++|+|+||++|.+++..+.+.+.++++||+||||
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~--~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ--IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH--HHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 99999999999999987654 5677677666543321 22233468999999999999999888889999999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
+|++ |+++||||+++.+..+...++.+|..+.+.... ....+.+.++.+.... +...+..
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ 235 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQR 235 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHH
Confidence 9875 379999999999999999999888877765543 3445777777766544 6666666
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++
T Consensus 236 ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 236 LLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 44332 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceec
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~ 463 (480)
||+||+| .++..|+||+||+||+|+.|.|++|+.+. +...+..++++++..+...
T Consensus 314 VI~~d~p--------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~~~~~~~~ 368 (460)
T PRK11776 314 VINYELA--------RDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYLGRKLNWE 368 (460)
T ss_pred EEEecCC--------CCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHhCCCCcee
Confidence 9999999 88999999999999999999999999864 5667788999998876654
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-60 Score=487.04 Aligned_cols=349 Identities=35% Similarity=0.557 Sum_probs=304.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|.+++|++.+++++.+ +||..|+|+|.++||.++.| +|+|++||||||||++|++|+++.+......+++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g--~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 5579999999999999986 99999999999999999999 99999999999999999999999987666678999999
Q ss_pred cCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
||++||.|+++.+..+.... ++.+..++++..... .......+++|+|+||++|.+++....+.++++++|||||||
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~--q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV--QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH--HHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 99999999999999987664 577767776654322 222233468999999999999999888889999999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
+|++ |+++||||+|..+..+...++.++..+.+.........+.+.++.+. ...+...+..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 9875 38999999999999999999998888877766666667777766654 3355566655
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+. .. ...++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 239 ~L~-~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 239 FLE-AE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHH-hc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 332 22 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|||||+| .+++.|+||+|||||+|+.|.+++|+.+. +...++.|++.++..+++++
T Consensus 317 VI~~d~P--------~~~e~yvqRiGRtGRaGr~G~ai~~v~~~-e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 317 VVNYDIP--------MDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred EEEeCCC--------CCHHHHHHHhccccCCCCcceEEEEechH-HHHHHHHHHHHhCCCcceec
Confidence 9999999 89999999999999999999999999864 56788999999999998875
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-61 Score=442.67 Aligned_cols=336 Identities=31% Similarity=0.445 Sum_probs=287.0
Q ss_pred CCCcccCCC--CHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC---CCCC--
Q 011667 99 ATTFEDLNL--SPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKA-- 171 (480)
Q Consensus 99 ~~~f~~~~l--~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~---~~~~-- 171 (480)
...|++++. +++++.++.. +||...||+|..+||.++.+ +||++.|+||||||+||++|++..+.. ..+.
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~--KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~ 79 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKN--KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQ 79 (567)
T ss_pred CcchhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcC--CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccc
Confidence 346777754 4999999987 99999999999999999999 999999999999999999999998821 1122
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhcc-cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc--cccCce
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRL 248 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~ 248 (480)
..+|||+|||||+.|+...+..|..+ .++++.+++||... ..........+++|+|||||||.+++++.. +.+.++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v-~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSV-EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccH-HHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 35899999999999999999998877 55777778877433 223333444578999999999999999843 456699
Q ss_pred EEEEEcCchhhhhh------------------heeeeccccHHHHHHHHHHhcccceeeeccccc--cccccEEEEEEcC
Q 011667 249 KILVYDEADHMLDE------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL--SLESVKQYKVYCP 308 (480)
Q Consensus 249 ~~lViDEah~l~~~------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 308 (480)
.++|+||||++++. +-+||||.+..+.++....+.+|..+.+..... ++..+..+|..|.
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 99999999999883 789999999999999999999999999887765 7777888888776
Q ss_pred chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 011667 309 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 386 (480)
. ..|+..++..+.. ...+++|||++|+..++.++..|... ...+..+||.|.+..|..++..|......+|+|||
T Consensus 239 a-~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 239 A-DEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred H-HHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 4 4677777764544 26689999999999999999999775 77899999999999999999999998889999999
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHH
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 450 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~ 450 (480)
+++||||||++++||+||+| .++..|+||+|||||+|+.|.+++|+.+.+ ..+..
T Consensus 316 VaARGlDip~iD~VvQ~DpP--------~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E-~aYve 370 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPP--------KDPSSFVHRCGRTARAGREGNAIVFLNPRE-EAYVE 370 (567)
T ss_pred hhhccCCCCCceEEEecCCC--------CChhHHHhhcchhhhccCccceEEEecccH-HHHHH
Confidence 99999999999999999999 889999999999999999999999999854 33433
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.6e-60 Score=475.16 Aligned_cols=347 Identities=31% Similarity=0.494 Sum_probs=299.2
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC------CCCeE
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL------KAPQA 174 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~------~~~~~ 174 (480)
+|++++|++.+++++.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++.+.... ...++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEG--RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceE
Confidence 79999999999999987 99999999999999999999 99999999999999999999999875421 23579
Q ss_pred EEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEc
Q 011667 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (480)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 254 (480)
|||+||++||.|+.+.+..+....++.+..++++.....+ .......++|+|+||++|++++....+.++++++||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHH--HHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 9999999999999999999988888887777776654332 12223468999999999999998888889999999999
Q ss_pred Cchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHH
Q 011667 255 EADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 316 (480)
Q Consensus 255 Eah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (480)
|||+|++ |+++||||++..+..+...++.++..+.+.........+.+.+..+.. ..+...
T Consensus 157 Eah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 235 (456)
T PRK10590 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKREL 235 (456)
T ss_pred cHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHH
Confidence 9999875 378999999999999898998888877776665556667777666543 344444
Q ss_pred HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 011667 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 317 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
+.. +.... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 236 l~~-l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~ 313 (456)
T PRK10590 236 LSQ-MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (456)
T ss_pred HHH-HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCccc
Confidence 444 33222 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
+++||||++| .++.+|+||+||+||+|..|.+++|+... +...++.+++.++..++...
T Consensus 314 v~~VI~~~~P--------~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~~~~~~~~ 372 (456)
T PRK10590 314 LPHVVNYELP--------NVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLKKEIPRIA 372 (456)
T ss_pred CCEEEEeCCC--------CCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhcCCCcccc
Confidence 9999999999 88999999999999999999999999864 67788999999998886543
No 21
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-61 Score=435.83 Aligned_cols=356 Identities=29% Similarity=0.470 Sum_probs=310.6
Q ss_pred CCCCccc-CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC------CCC
Q 011667 98 SATTFED-LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP------NLK 170 (480)
Q Consensus 98 ~~~~f~~-~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~------~~~ 170 (480)
+.-+|++ +.-.+++++.+.+ .||.+|||+|.+|||.+|+| .|++++|.||+|||++|++|.+-++.. +..
T Consensus 217 P~ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG--~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQG--IDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecC--cceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 4455654 5677999999987 99999999999999999999 999999999999999999999887743 345
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEE
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 250 (480)
++.+|+++|||+|+.|+.-.+.++. ..+....|++++++.+.+ ...+..+.+|+++||++|.++...+.+++.++.+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eq--ie~lkrgveiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQ--IEDLKRGVEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhH--HHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 7789999999999999988887765 347778899988877653 3344557899999999999999999999999999
Q ss_pred EEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeecccccc-ccccEEEEEEcCchh
Q 011667 251 LVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS-LESVKQYKVYCPDEL 311 (480)
Q Consensus 251 lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 311 (480)
||+||||+|++ |+++.|||+|+.+..+...++++|..+.+...... ...++|.+ .+..+.
T Consensus 371 lVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~ 449 (629)
T KOG0336|consen 371 LVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDS 449 (629)
T ss_pred EEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccH
Confidence 99999999998 48999999999999999999999999888776554 45666666 666677
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
.++..+.. +........++||||.++..|+.|..-|.-.|+....+||+-.|.+|+..++.|++|+++||||||+++||
T Consensus 450 ~k~~~~~~-f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRG 528 (629)
T KOG0336|consen 450 EKLEIVQF-FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRG 528 (629)
T ss_pred HHHHHHHH-HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcC
Confidence 77766555 45555688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHHH
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDF 470 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 470 (480)
||+++++||+|||+| .+++.|+||+||+||+|+.|.+++|++- .++.+...+.+.|...-+++|+.+..+
T Consensus 529 lDv~DiTHV~NyDFP--------~nIeeYVHRvGrtGRaGr~G~sis~lt~-~D~~~a~eLI~ILe~aeQevPdeL~~m 598 (629)
T KOG0336|consen 529 LDVPDITHVYNYDFP--------RNIEEYVHRVGRTGRAGRTGTSISFLTR-NDWSMAEELIQILERAEQEVPDELVRM 598 (629)
T ss_pred CCchhcceeeccCCC--------ccHHHHHHHhcccccCCCCcceEEEEeh-hhHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 999999999999999 8999999999999999999999999985 467788888888887777787555443
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.6e-60 Score=479.30 Aligned_cols=349 Identities=30% Similarity=0.489 Sum_probs=299.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-------CCC
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-------LKA 171 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-------~~~ 171 (480)
..+|.+++|++.++++|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++++... ...
T Consensus 8 ~~~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G--~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~ 84 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPG--GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPED 84 (572)
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCC
Confidence 3579999999999999986 99999999999999999999 9999999999999999999999887431 124
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEE
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKI 250 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~ 250 (480)
+++|||+||++|+.|+++.+.+++...++.+..++++.....+ .......++|+|+||++|++++... .+.+..+++
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q--~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~ 162 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ--RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEI 162 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHHhCCCCEEEECHHHHHHHHHhccccchhheee
Confidence 7899999999999999999999999888888888877654322 1222335899999999999999774 467889999
Q ss_pred EEEcCchhhhh--------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch
Q 011667 251 LVYDEADHMLD--------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310 (480)
Q Consensus 251 lViDEah~l~~--------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
|||||||+|++ |+++||||++..+..+...++..+..+.+.........+.+.++... .
T Consensus 163 lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~ 241 (572)
T PRK04537 163 CVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA-D 241 (572)
T ss_pred eEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-H
Confidence 99999998765 37899999999999988888888877766665555566677666554 4
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..+...+..++.. ....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 4566665553332 25678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|||+|++++|||||+| .++..|+||+||+||.|+.|.|++|+++. +...+..++++++..+...+
T Consensus 320 GIDip~V~~VInyd~P--------~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 320 GLHIDGVKYVYNYDLP--------FDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred CCCccCCCEEEEcCCC--------CCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999 78999999999999999999999999864 56678899999988876554
No 23
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=441.49 Aligned_cols=366 Identities=31% Similarity=0.493 Sum_probs=337.0
Q ss_pred ccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC--
Q 011667 90 TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-- 167 (480)
Q Consensus 90 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-- 167 (480)
..+..++.+.++|+.++....|..++.+ .-|.+|||+|.+++|..+.| ++++..|.||||||.+|++|++-++..
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsg--rdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSG--RDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhh-hhcccCCccccccccccccc--ccchheeeccCcchhHHHHHHHHHhcchh
Confidence 4578889999999999999999999987 89999999999999999999 999999999999999999999988853
Q ss_pred ---CCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccc
Q 011667 168 ---NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244 (480)
Q Consensus 168 ---~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 244 (480)
...+|..||+||||+||.|++.++++|++..++++.+++++++...+. +.+..++.|+||||+||.+++..+...
T Consensus 290 eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~--k~Lk~g~EivVaTPgRlid~VkmKatn 367 (731)
T KOG0339|consen 290 ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQS--KELKEGAEIVVATPGRLIDMVKMKATN 367 (731)
T ss_pred hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHH--HhhhcCCeEEEechHHHHHHHHhhccc
Confidence 245788999999999999999999999999999999999999776533 334478999999999999999999999
Q ss_pred cCceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEE
Q 011667 245 FSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 306 (480)
Q Consensus 245 ~~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (480)
+.++.+|||||||+|++ |+++||||++..+..+++.++.+|..+....-......|.|.+..
T Consensus 368 ~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 368 LSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSV 447 (731)
T ss_pred ceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeee
Confidence 99999999999999987 599999999999999999999999998888777777889999999
Q ss_pred cCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 011667 307 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386 (480)
Q Consensus 307 ~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 386 (480)
+++...|+.+|...|-... ..+++|||+.-+..++.++..|.-.+++|..+||+|.|.+|.+++..|+.+...|||+||
T Consensus 448 ~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatD 526 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD 526 (731)
T ss_pred ccCcHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEee
Confidence 9999999999988777665 678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCC
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 466 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~ 466 (480)
+++||+||+++..||+||.- ++++.|.||+||+||+|.+|.+++|++++|. .+...+-+.|.-.-+.+|+.
T Consensus 527 vaargldI~~ikTVvnyD~a--------rdIdththrigrtgRag~kGvayTlvTeKDa-~fAG~LVnnLe~agQnVP~~ 597 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFA--------RDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA-EFAGHLVNNLEGAGQNVPDE 597 (731)
T ss_pred HhhcCCCccccceeeccccc--------chhHHHHHHhhhcccccccceeeEEechhhH-HHhhHHHHHHhhccccCChH
Confidence 99999999999999999999 8999999999999999999999999998754 47788888888888888876
Q ss_pred HHHH
Q 011667 467 DEDF 470 (480)
Q Consensus 467 ~~~~ 470 (480)
+.++
T Consensus 598 l~dl 601 (731)
T KOG0339|consen 598 LMDL 601 (731)
T ss_pred HHHH
Confidence 6654
No 24
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3e-62 Score=440.22 Aligned_cols=366 Identities=27% Similarity=0.436 Sum_probs=312.7
Q ss_pred ccccccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhcc
Q 011667 86 IKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 86 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
......|+..++++.+|.++..+..+++.+.+ .|+..|||+|.+.+|.+|+| +|.|..|-||||||++|.+|++...
T Consensus 156 ~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsG--RDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 156 LHILVEGDDIPPPIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred heEEeeCCCCCCchhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeec--CceeeEEeecCCceEEEeHHHHHHH
Confidence 34456788889999999999999999999997 89999999999999999999 9999999999999999999986543
Q ss_pred C--------CCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC------ceeeEeecCCCCCcccccCCCCCCCeEEEeCh
Q 011667 166 D--------PNLKAPQALCICPTRELAIQNLEVLRKMGKHTG------ITSECAVPTDSTNYVPISKRPPVTAQVVIGTP 231 (480)
Q Consensus 166 ~--------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp 231 (480)
. ....++..||+||+|+||.|.++.+..+...+. ++...++|+.... +.......+.+|+|+||
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~--eql~~v~~GvHivVATP 310 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR--EQLDVVRRGVHIVVATP 310 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH--HHHHHHhcCeeEEEcCc
Confidence 1 234578899999999999999999888755433 3444444444332 23333445789999999
Q ss_pred HHHHHHHhcCccccCceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccc
Q 011667 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293 (480)
Q Consensus 232 ~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
|||.+++..+.+.+.-++++++||||+|++ |+++||||+|..++.+++..+..|..+.+.+.
T Consensus 311 GRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 311 GRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 390 (610)
T ss_pred chHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccc
Confidence 999999999899999999999999999987 59999999999999999999999999999988
Q ss_pred cccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 011667 294 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
....-++.|.+-++. .+.|+.++++.+. ....++||||..+..++.+.++|--.|+.+..+||+.+|++|...++.
T Consensus 391 GAAsldViQevEyVk-qEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~a 466 (610)
T KOG0341|consen 391 GAASLDVIQEVEYVK-QEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEA 466 (610)
T ss_pred cccchhHHHHHHHHH-hhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHH
Confidence 776666655544443 3455555544333 356899999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHH
Q 011667 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 453 (480)
Q Consensus 374 f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~ 453 (480)
|+.|+-+||||||+++.|+|+|++.||||||+| ..++.|+||+|||||.|+.|.+.+|++.+.+...+-.+.
T Consensus 467 fr~gkKDVLVATDVASKGLDFp~iqHVINyDMP--------~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK 538 (610)
T KOG0341|consen 467 FRAGKKDVLVATDVASKGLDFPDIQHVINYDMP--------EEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLK 538 (610)
T ss_pred HhcCCCceEEEecchhccCCCccchhhccCCCh--------HHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHH
Confidence 999999999999999999999999999999999 899999999999999999999999999999998888888
Q ss_pred HHhCCcceecCCCHH
Q 011667 454 RYFDIKVTEVRNSDE 468 (480)
Q Consensus 454 ~~l~~~~~~~~~~~~ 468 (480)
..|.-.-.++|+-+.
T Consensus 539 ~LL~EakQ~vP~~L~ 553 (610)
T KOG0341|consen 539 HLLQEAKQEVPPVLA 553 (610)
T ss_pred HHHHHhhccCCHHHH
Confidence 888666666654433
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-60 Score=447.82 Aligned_cols=369 Identities=30% Similarity=0.459 Sum_probs=317.5
Q ss_pred ccccccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhcc
Q 011667 86 IKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 86 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
+....+|...+....+|.+-.+.+.+..++.. .++..|||+|+.+||.+..| ++++++|+||||||.+|++|++.++
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~G--rdl~acAqTGsGKT~aFLiPii~~~ 136 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGG--RDLMACAQTGSGKTAAFLIPIISYL 136 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhcccc-ccccCCCcceeeccceeecC--CceEEEccCCCcchHHHHHHHHHHH
Confidence 34445566666677799998999999999875 89999999999999999999 9999999999999999999999987
Q ss_pred CCCC----------CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHH
Q 011667 166 DPNL----------KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 235 (480)
Q Consensus 166 ~~~~----------~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~ 235 (480)
.... ..+++||++|||+||.|++.+.+++....++.....+++.... ........+++|+|+|||+|.
T Consensus 137 ~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~--~q~~~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 137 LDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG--AQLRFIKRGCDILVATPGRLK 214 (482)
T ss_pred HhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh--hhhhhhccCccEEEecCchhh
Confidence 4322 2478999999999999999999999988888888888775433 334455568999999999999
Q ss_pred HHHhcCccccCceEEEEEcCchhhhh-----------------------hheeeeccccHHHHHHHHHHhcc-cceeeec
Q 011667 236 KWMSAKKLGFSRLKILVYDEADHMLD-----------------------EVLLFSATFNETVKNFVTRIVKD-YNQLFVK 291 (480)
Q Consensus 236 ~~l~~~~~~~~~~~~lViDEah~l~~-----------------------~~~~~SAT~~~~~~~~~~~~~~~-~~~~~~~ 291 (480)
++++.+.+.+.+++++||||||+|++ |+++||||+|..+..++..++.+ +..+.+.
T Consensus 215 d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~ 294 (482)
T KOG0335|consen 215 DLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG 294 (482)
T ss_pred hhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe
Confidence 99999999999999999999999998 38999999999999988888876 7788888
Q ss_pred cccccccccEEEEEEcCchhHHHHHHHHHHHHhcc--cCC-----cEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 292 KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE--KMG-----QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~-----~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
.-.....++.|...++... .+...|.+++..... ..+ .++|||.+++.+..++.+|...++++..+||..++
T Consensus 295 rvg~~~~ni~q~i~~V~~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq 373 (482)
T KOG0335|consen 295 RVGSTSENITQKILFVNEM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQ 373 (482)
T ss_pred eeccccccceeEeeeecch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhh
Confidence 8888888999999988755 444555554443321 223 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 365 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 365 ~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
.+|.+.++.|++|...+||||++++||||+|+|+|||+||+| .+..+|+||||||||.|+.|.++.|+.. .
T Consensus 374 ~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP--------~d~d~YvHRIGRTGR~Gn~G~atsf~n~-~ 444 (482)
T KOG0335|consen 374 IEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMP--------ADIDDYVHRIGRTGRVGNGGRATSFFNE-K 444 (482)
T ss_pred hHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecC--------cchhhHHHhccccccCCCCceeEEEecc-c
Confidence 999999999999999999999999999999999999999999 8899999999999999999999999984 4
Q ss_pred cHHHHHHHHHHhCCcceecCCCHHH
Q 011667 445 DMIIMEKIERYFDIKVTEVRNSDED 469 (480)
Q Consensus 445 ~~~~~~~i~~~l~~~~~~~~~~~~~ 469 (480)
.....+.+-+.+.-.-.++|.-+.+
T Consensus 445 ~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 445 NQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred cchhHHHHHHHHHHhcccCcHHHHh
Confidence 5566777877777666666644443
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-59 Score=467.62 Aligned_cols=348 Identities=31% Similarity=0.524 Sum_probs=300.6
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC----CCCCCeEE
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAPQAL 175 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~----~~~~~~~l 175 (480)
++|+++++++.+++.+.. +||..|+++|.++|+.++.| +|++++||||+|||++|++|+++++.. ....+++|
T Consensus 1 ~~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~l 77 (434)
T PRK11192 1 TTFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDG--RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRIL 77 (434)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEE
Confidence 369999999999999987 99999999999999999999 999999999999999999999988743 22346899
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcC
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 255 (480)
|++||++||.|+++.+..++...++.+..++|+...... .......++|+|+||++|++++....+.+.++++|||||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNH--AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999999999999999999999888888877776543322 222234579999999999999998888899999999999
Q ss_pred chhhhh------------------hheeeeccccH-HHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHH
Q 011667 256 ADHMLD------------------EVLLFSATFNE-TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 316 (480)
Q Consensus 256 ah~l~~------------------~~~~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (480)
||+|++ |+++||||++. .+..+...++.++..+...........+.+.+..++....+...
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 235 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTAL 235 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHH
Confidence 999876 36999999984 57777777787877777666555566777888777766777777
Q ss_pred HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 011667 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 317 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
+...+ .. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 236 l~~l~-~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 236 LCHLL-KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred HHHHH-hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 66633 32 24679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceec
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~ 463 (480)
+++|||||+| .+...|+||+||+||+|..|.+++|+.. .+...+..+++++...+...
T Consensus 314 v~~VI~~d~p--------~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~~~~~~ 371 (434)
T PRK11192 314 VSHVINFDMP--------RSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEEPLKAR 371 (434)
T ss_pred CCEEEEECCC--------CCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhcccccc
Confidence 9999999999 8899999999999999999999999975 56778888999888776443
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-57 Score=459.10 Aligned_cols=349 Identities=27% Similarity=0.449 Sum_probs=299.4
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC-------
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL------- 169 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~------- 169 (480)
.....|.++++++.++++|.+ +||..|+++|.++|+.+++| +|+++++|||||||++|++|+++.+....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G--~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~ 160 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAG--HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYM 160 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhcCccccccc
Confidence 346689999999999999987 99999999999999999999 99999999999999999999999875432
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceE
Q 011667 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK 249 (480)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 249 (480)
..+++|||+||++||.|+++.+..+....++.+...+++....... .......++|+|+||++|+.++......+++++
T Consensus 161 ~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~-~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 161 GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL-KQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH-HHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 1468999999999999999999999888888887777765433211 111223579999999999999988888899999
Q ss_pred EEEEcCchhhhh--------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc
Q 011667 250 ILVYDEADHMLD--------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 309 (480)
Q Consensus 250 ~lViDEah~l~~--------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
+|||||||++++ |++++|||++..+..++..++.++..+.+.........+.+.+..+..
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 999999999864 378999999999999899888888777666655555566666655543
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~ 389 (480)
..+...+...+.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||++++
T Consensus 320 -~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~ 396 (475)
T PRK01297 320 -SDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 396 (475)
T ss_pred -hhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 3455555553332 2456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcce
Q 011667 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 461 (480)
Q Consensus 390 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~ 461 (480)
+|||+|++++||+|++| .|..+|+||+||+||.|++|.+++|+.+. +..++..++++++..+.
T Consensus 397 ~GIDi~~v~~VI~~~~P--------~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 397 RGIHIDGISHVINFTLP--------EDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLGRKIS 459 (475)
T ss_pred cCCcccCCCEEEEeCCC--------CCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhCCCCc
Confidence 99999999999999999 89999999999999999999999999864 67789999999998874
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-57 Score=449.61 Aligned_cols=352 Identities=38% Similarity=0.609 Sum_probs=304.0
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.+ +||..|+|+|.++|+.+++| +|++++||||||||++|++|++..+.....+.++|||+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~--~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDG--YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 5789999999999999986 99999999999999999999 99999999999999999999999887665677899999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
||++|+.|+.+.+..++...++.+....++.... ........+++|+|+||++|.+++......++++++||+||||+
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVR--DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHH--HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 9999999999999998877666655555554321 11122233578999999999999988788899999999999998
Q ss_pred hhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHH
Q 011667 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320 (480)
Q Consensus 259 l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 320 (480)
+.+ +++++|||++..+..+...++..+..+.+.........+.+++........+...+...
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 764 38999999999988888888888877777666666777888877776655555555553
Q ss_pred HHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 011667 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 400 (480)
Q Consensus 321 l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 400 (480)
+ ... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 262 ~-~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 262 Y-ETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred H-Hhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 2 222 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCC
Q 011667 401 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 466 (480)
Q Consensus 401 i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~ 466 (480)
|+|++| .+...|+||+||+||.|+.|.|++|+++ ++...+..+++.+...+++++..
T Consensus 340 I~~~~p--------~s~~~y~qr~GRagR~g~~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 340 INYDLP--------ASPENYIHRIGRSGRFGRKGVAINFVTP-DDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEECCC--------CCHHHEeecccccccCCCCceEEEEEcH-HHHHHHHHHHHHHCCcccccCcc
Confidence 999999 8899999999999999999999999975 46778889999999999888744
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-58 Score=414.15 Aligned_cols=352 Identities=37% Similarity=0.648 Sum_probs=321.7
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|++++|++.|+++++. +||.+|+.+|++||..+..| .|+++++++|+|||.+|.+++++.+.......++|++.
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G--~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKG--HDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccC--CceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 4589999999999999997 99999999999999999999 99999999999999999999999998877788999999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
|||+||.|.......++...++.+..++++....... .......++|+++|||++.++++.+.+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~-~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRED-QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhh-hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 9999999999999999999998888777776554322 233334589999999999999999888888899999999999
Q ss_pred hhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHH
Q 011667 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320 (480)
Q Consensus 259 l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 320 (480)
|+. |++++|||+|.++......++.+|..+.+...+.+...++|+++.+..+. |+..+.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d- 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD- 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH-
Confidence 986 58999999999999999999999999999999999999999999987766 7777766
Q ss_pred HHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 011667 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 400 (480)
Q Consensus 321 l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 400 (480)
+++ .....+||||++..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||+|+.++||+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 344 55788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHH
Q 011667 401 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 468 (480)
Q Consensus 401 i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 468 (480)
|||++| ...+.|+||+||+||.|++|.++.|+++. +...++.++++|+.+|+++|.+..
T Consensus 336 inydlP--------~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 336 VNYDLP--------ARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred eeeccc--------cchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcceecccchh
Confidence 999999 78999999999999999999999999864 567889999999999999996543
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-58 Score=419.52 Aligned_cols=345 Identities=28% Similarity=0.461 Sum_probs=292.2
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC------CCCCC
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP------NLKAP 172 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~------~~~~~ 172 (480)
..+|++++|.+.+++++.+ +||++||-+|..+||.+|.| +|+++.|.||||||.+|++|+++.+.. ...++
T Consensus 18 ~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEg--KDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~ 94 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEG--KDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGP 94 (569)
T ss_pred hccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcC--cceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccc
Confidence 4689999999999999997 99999999999999999999 999999999999999999999998732 34578
Q ss_pred eEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc-cccCceEEE
Q 011667 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKIL 251 (480)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~l 251 (480)
.++|++||+|||+|++..+.++...+...+..+....+.+.......+...++|+|+||++++.++..+. ..+..+.++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 8999999999999999999998776653222221111112112223344568999999999999999877 567899999
Q ss_pred EEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeecccccc-ccccEEEEEEcCchhH
Q 011667 252 VYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS-LESVKQYKVYCPDELA 312 (480)
Q Consensus 252 ViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 312 (480)
|+||||.++. |.++||||++.++..+-..++.+|..+.....+.. ...+.|+.+.|. +..
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~D 253 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EED 253 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cch
Confidence 9999999886 58999999999999999999999998877766654 456788888887 566
Q ss_pred HHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----
Q 011667 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV----- 387 (480)
Q Consensus 313 k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~----- 387 (480)
|...+.. ++.+.--.+++|||+|+++.|.++.-.|...|++.++++|.|+...|..++++|+.|-++|+||||.
T Consensus 254 Kflllya-llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~ 332 (569)
T KOG0346|consen 254 KFLLLYA-LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGD 332 (569)
T ss_pred hHHHHHH-HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchh
Confidence 7666655 4555446799999999999999999999999999999999999999999999999999999999992
Q ss_pred ------------------------------cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEE
Q 011667 388 ------------------------------LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437 (480)
Q Consensus 388 ------------------------------~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~ 437 (480)
.+||||+.+|.+|+|||+| .+...|+||+|||+|++++|.++
T Consensus 333 ~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P--------~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 333 KLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP--------ETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred hhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCC--------CchHHHHHhccccccCCCCCceE
Confidence 4799999999999999999 89999999999999999999999
Q ss_pred EEeeCCccHHHHHHHHHHhC
Q 011667 438 NLLMDGDDMIIMEKIERYFD 457 (480)
Q Consensus 438 ~l~~~~~~~~~~~~i~~~l~ 457 (480)
+|+++.+. .....++..+.
T Consensus 405 Sfv~P~e~-~g~~~le~~~~ 423 (569)
T KOG0346|consen 405 SFVSPKEE-FGKESLESILK 423 (569)
T ss_pred EEecchHH-hhhhHHHHHHh
Confidence 99997653 33355555553
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-57 Score=418.29 Aligned_cols=352 Identities=26% Similarity=0.413 Sum_probs=272.9
Q ss_pred CCcccCCCCHHHHH----------HHHhhcCCCCChHHHHhhcccccCC-------CCccEEEEccCCCccchHhHHHHh
Q 011667 100 TTFEDLNLSPELLK----------GLYVEMKFQKPSKIQAISLPMILTP-------PYRNLIAQARNGSGKTTCFVLGML 162 (480)
Q Consensus 100 ~~f~~~~l~~~l~~----------~l~~~~~~~~p~~~Q~~~i~~il~~-------~~~~~lv~a~TGsGKTl~~~l~il 162 (480)
..|+.++++..... .+.+ +++....|+|..++|.+|.. ..+|++|.||||||||++|.+||+
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 34556665555443 3665 89999999999999988642 248999999999999999999999
Q ss_pred hccCCC-CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCC----CCCeEEEeChHHHHHH
Q 011667 163 SRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP----VTAQVVIGTPGTIKKW 237 (480)
Q Consensus 163 ~~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~ 237 (480)
+.+... .+.-+++||+||++|+.|+++.|..++...++.+....+..+... +..+... ...+|+|+|||||.+|
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~-E~~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLED-EARQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHH-HHHHHhcCCCccccceEEcCchHHHHh
Confidence 998765 566799999999999999999999999999988665554443221 1111111 2359999999999999
Q ss_pred Hhc-CccccCceEEEEEcCchhhhhh----------------------------------------------------he
Q 011667 238 MSA-KKLGFSRLKILVYDEADHMLDE----------------------------------------------------VL 264 (480)
Q Consensus 238 l~~-~~~~~~~~~~lViDEah~l~~~----------------------------------------------------~~ 264 (480)
+.+ ..+.+.+++++||||||+|+++ .+
T Consensus 285 l~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL 364 (620)
T KOG0350|consen 285 LNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKL 364 (620)
T ss_pred ccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhh
Confidence 996 6789999999999999999874 56
Q ss_pred eeeccccHHHHHHHHHHhcccceeeec----cccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhh
Q 011667 265 LFSATFNETVKNFVTRIVKDYNQLFVK----KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS 340 (480)
Q Consensus 265 ~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~ 340 (480)
+||||+..+-..+...-+..|....+. .....+..+.+..+.+... -+-..+.. +.... ...++|+|+++...
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~-~kpl~~~~-lI~~~-k~~r~lcf~~S~~s 441 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK-FKPLAVYA-LITSN-KLNRTLCFVNSVSS 441 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc-cchHhHHH-HHHHh-hcceEEEEecchHH
Confidence 788888766555555555555444433 2233344455555554432 22222223 22222 56799999999999
Q ss_pred HHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCC
Q 011667 341 ASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 416 (480)
Q Consensus 341 ~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s 416 (480)
+.+++..|. ..+.++-.+.|+++.+.|.+.+..|..|.+++|||||+++||+|+.+++.|||||+| .+
T Consensus 442 a~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P--------~~ 513 (620)
T KOG0350|consen 442 ANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPP--------AS 513 (620)
T ss_pred HHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCC--------ch
Confidence 999999987 336677789999999999999999999999999999999999999999999999999 89
Q ss_pred cccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHh---CCcceecC
Q 011667 417 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF---DIKVTEVR 464 (480)
Q Consensus 417 ~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l---~~~~~~~~ 464 (480)
..+|+||+|||+|+|+.|.|++++...+.+.+.+.+.+.. +.++..++
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e 564 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIE 564 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeecC
Confidence 9999999999999999999999999887777766665543 45555554
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-56 Score=449.76 Aligned_cols=359 Identities=32% Similarity=0.521 Sum_probs=320.3
Q ss_pred cCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC--
Q 011667 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-- 168 (480)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-- 168 (480)
.+..-+.++++|...+++..++..+.+ +||.+|+|||.+|||+|+.| +|||++|.||||||++|++|++.++..+
T Consensus 356 ~g~~~pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsG--rdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 356 KGKECPKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSG--RDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred ccCCCCcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccC--cceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 345567789999999999999999965 99999999999999999999 9999999999999999999999877432
Q ss_pred ---CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc--
Q 011667 169 ---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-- 243 (480)
Q Consensus 169 ---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-- 243 (480)
..||.+||++|||+|+.|+.+++++|...+++++.|++++.+... ....+..++.|+|||||++.+++-.+.-
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~--qiaelkRg~eIvV~tpGRmiD~l~~n~grv 510 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ--QIAELKRGAEIVVCTPGRMIDILCANSGRV 510 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH--HHHHHhcCCceEEeccchhhhhHhhcCCcc
Confidence 358899999999999999999999999999999999998886554 2333444689999999999999876544
Q ss_pred -ccCceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEE
Q 011667 244 -GFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYK 304 (480)
Q Consensus 244 -~~~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
++.++.++|+||||+|++ |+++||||++..+..++...+..|..+.+.........+.+.+
T Consensus 511 tnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v 590 (997)
T KOG0334|consen 511 TNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVV 590 (997)
T ss_pred ccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEE
Confidence 455666999999999987 5899999999999999999999999999988888888999999
Q ss_pred EEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011667 305 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 384 (480)
Q Consensus 305 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~ 384 (480)
..+..+..|+..|..+|.... ..+++||||.+...|..+.+.|.+.|+.|..+||+.++.+|..++++|+++.+.+|||
T Consensus 591 ~V~~~e~eKf~kL~eLl~e~~-e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 591 RVCAIENEKFLKLLELLGERY-EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred EEecCchHHHHHHHHHHHHHh-hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEe
Confidence 999988899999988776666 4889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 385 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 385 T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|++++||+|++.+.+|||||+| ...++|+||+|||||+|++|.|++|+.+ ++..+...|.+.+...-..+|
T Consensus 670 TsvvarGLdv~~l~Lvvnyd~p--------nh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 670 TSVVARGLDVKELILVVNYDFP--------NHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred hhhhhcccccccceEEEEcccc--------hhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999 8899999999999999999999999997 667777888888843333333
No 33
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-55 Score=413.31 Aligned_cols=363 Identities=32% Similarity=0.441 Sum_probs=312.3
Q ss_pred cccccCCCCCCCCCCccc----CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHh
Q 011667 87 KTVTTGDTPYTSATTFED----LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML 162 (480)
Q Consensus 87 ~~~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il 162 (480)
...+.|...+++..+|.+ +..++.++..+.. .+|..|+|+|.+++|.++.+ ++++.|||||||||++|.+|++
T Consensus 119 k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~--r~~lAcapTGsgKtlaf~~Pil 195 (593)
T KOG0344|consen 119 KINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEK--RDVLACAPTGSGKTLAFNLPIL 195 (593)
T ss_pred eeeccCCCCCCccccccccchhhhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcc--cceEEeccCCCcchhhhhhHHH
Confidence 445677887888999987 6799999999986 99999999999999999999 9999999999999999999999
Q ss_pred hccCCC-----CCCCeEEEEecCHHHHHHHHHHHHHHh--cccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHH
Q 011667 163 SRVDPN-----LKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 235 (480)
Q Consensus 163 ~~l~~~-----~~~~~~lil~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~ 235 (480)
.++... ..+-+++|+.|||+|+.|+++++.++. ...+..+...... ....+.........++|+|+||-++.
T Consensus 196 ~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~-~~~~qk~a~~~~~k~dili~TP~ri~ 274 (593)
T KOG0344|consen 196 QHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKP-AYPSQKPAFLSDEKYDILISTPMRIV 274 (593)
T ss_pred HHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccc-cchhhccchhHHHHHHHHhcCHHHHH
Confidence 988532 456789999999999999999999998 4333332221111 11111111222335789999999999
Q ss_pred HHHhcCc--cccCceEEEEEcCchhhhhh--------------------heeeeccccHHHHHHHHHHhcccceeeeccc
Q 011667 236 KWMSAKK--LGFSRLKILVYDEADHMLDE--------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293 (480)
Q Consensus 236 ~~l~~~~--~~~~~~~~lViDEah~l~~~--------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
.++..+. +.++.+.++|+||||+++.. +-+||||++..+++++.....++..+.+...
T Consensus 275 ~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 275 GLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred HHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 9998865 67899999999999998874 5689999999999999999999999999999
Q ss_pred cccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHH
Q 011667 294 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKAL-KDFGYEVTTIMGATIQEERDKIVK 372 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L-~~~~~~~~~l~~~~~~~~r~~~~~ 372 (480)
......+.|..+.+..+..|+..+.+.+... -..++|||+.+.+.|..|+..| .-.++++..+||..++.+|..+++
T Consensus 355 ~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 355 NSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHH
Confidence 8889999999999999999999998866554 4679999999999999999999 666899999999999999999999
Q ss_pred HHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHH
Q 011667 373 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 452 (480)
Q Consensus 373 ~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i 452 (480)
+|+.|+++|||||++++||+|+.+++.|||||.| .+..+|+||+||+||+|+.|.+|+||++ +++..++.+
T Consensus 433 ~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p--------~s~~syihrIGRtgRag~~g~Aitfytd-~d~~~ir~i 503 (593)
T KOG0344|consen 433 RFRIGKIWVLICTDLLARGIDFKGVNLVINYDFP--------QSDLSYIHRIGRTGRAGRSGKAITFYTD-QDMPRIRSI 503 (593)
T ss_pred HHhccCeeEEEehhhhhccccccCcceEEecCCC--------chhHHHHHHhhccCCCCCCcceEEEecc-ccchhhhhH
Confidence 9999999999999999999999999999999999 8899999999999999999999999997 567788888
Q ss_pred HHHhCCcceecC
Q 011667 453 ERYFDIKVTEVR 464 (480)
Q Consensus 453 ~~~l~~~~~~~~ 464 (480)
........-++|
T Consensus 504 ae~~~~sG~evp 515 (593)
T KOG0344|consen 504 AEVMEQSGCEVP 515 (593)
T ss_pred HHHHHHcCCcch
Confidence 777755555555
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-53 Score=406.37 Aligned_cols=337 Identities=34% Similarity=0.514 Sum_probs=300.4
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCC
Q 011667 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172 (480)
Q Consensus 93 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~ 172 (480)
+..+.....|+++.+..+++.+|.. .+|..||++|..|||.++.+ -|+||+|..|+|||++|.+.+++.+......+
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~k--mDliVQaKSGTGKTlVfsv~av~sl~~~~~~~ 94 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSK--MDLIVQAKSGTGKTLVFSVLAVESLDSRSSHI 94 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcc--cceEEEecCCCCceEEEEeeeehhcCcccCcc
Confidence 3344456789999999999999987 89999999999999999999 99999999999999999999999998888888
Q ss_pred eEEEEecCHHHHHHHHHHHHHHhcc-cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEE
Q 011667 173 QALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251 (480)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 251 (480)
+++||+|||++|.|+.+.+..++.. .|.++...+||+..... ......++|+|+||||+..++..+.++.++++++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d---~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLD---LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhh---hhhhhhceEEecCchHHHHHHHhcCCCccceeEE
Confidence 9999999999999999999998863 56787778877754322 2222357899999999999999999999999999
Q ss_pred EEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchh-
Q 011667 252 VYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL- 311 (480)
Q Consensus 252 ViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (480)
|+||||.|.+ |++.||||+|..+.+.+..++.+|..+........+-+++|+++..+...
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc
Confidence 9999999987 48999999999999999999999999999999999999999998776542
Q ss_pred ------HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011667 312 ------AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 385 (480)
Q Consensus 312 ------~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T 385 (480)
.|+..|.. ++... +..++||||+....|+.++..|...|+.|.++.|.|+|.+|..+++.++.-.++|||+|
T Consensus 252 sveemrlklq~L~~-vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTH-VFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred hHHHHHHHHHHHHH-HHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 23444444 33333 56688999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 386 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
|+.+||||-+++++|||.|+| .+.++|.||||||||.|..|.+++|+.+..+
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p--------~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAP--------ADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCC--------cchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999 8999999999999999999999999987665
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.7e-52 Score=432.27 Aligned_cols=335 Identities=20% Similarity=0.291 Sum_probs=261.7
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
.+++.+.++|.+ .||.+|+++|.++||.+++| +|+++++|||||||++|++|+++.+... .+.++|||+||++|+.
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G--~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAG--RHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCC--CCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHH
Confidence 488999999986 99999999999999999999 9999999999999999999999998653 4579999999999999
Q ss_pred HHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC----ccccCceEEEEEcCchhhhh
Q 011667 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK----KLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 186 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~----~~~~~~~~~lViDEah~l~~ 261 (480)
|+...++.++ ..++++....|...... .......++|+|+||++|...+... ...++++++|||||||.+.+
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~~---r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTEE---RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHHH---HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 9999999987 34566655544443221 1222335799999999987533221 12378999999999998743
Q ss_pred ------------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc--------
Q 011667 262 ------------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD-------- 309 (480)
Q Consensus 262 ------------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 309 (480)
|+++||||+++... .+..++..+..+ +.... ......+.....+.
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~-~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG-SPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC-CCcCceEEEEecCCcccccccc
Confidence 47899999998765 466666655433 22222 12222232222221
Q ss_pred --------hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHH
Q 011667 310 --------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 310 --------~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
...+...+ ........++||||+|++.++.++..|... +..+..+||++.+.+|..+++.
T Consensus 249 ~~~~r~~~~~~~~~~l----~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 249 GAPVRRSASAEAADLL----ADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccchHHHHHHHH----HHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 11222233 333334679999999999999999988653 5678999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeC-CccHHHHHHH
Q 011667 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD-GDDMIIMEKI 452 (480)
Q Consensus 374 f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~~i 452 (480)
|++|++++||||+++++|||++++++||+|+.| .+..+|+||+|||||.|+.|.++++..+ ..+..++..+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P--------~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFP--------GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCC--------CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCH
Confidence 999999999999999999999999999999999 8999999999999999999999988863 3456677778
Q ss_pred HHHhCCcceec
Q 011667 453 ERYFDIKVTEV 463 (480)
Q Consensus 453 ~~~l~~~~~~~ 463 (480)
+++++..++..
T Consensus 397 ~~~~~~~~e~~ 407 (742)
T TIGR03817 397 EALFDRPVEAT 407 (742)
T ss_pred HHHhcCCCccc
Confidence 88888877664
No 36
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=382.29 Aligned_cols=349 Identities=29% Similarity=0.439 Sum_probs=306.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-CCCCeEEEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCI 177 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-~~~~~~lil 177 (480)
...|+.++|+..+++++.+ -||..|||+|++.||.+|.| ++++..+-||||||.||++|+++++... ..+.+++++
T Consensus 20 ~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~--~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEG--RDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred CCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeec--cccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 5689999999999999997 79999999999999999999 9999999999999999999999998643 356799999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+||++|+.|+.+.++.++..++.+..+.+++.+... .+..+...+||+++||+++.++.-.-.+.++.+.+||+||||
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~ee--qf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEE--QFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred cCcHHHHHHHHHHHHHhccccchhhhhhcccchHHH--HHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999999999999888888775443 444555578999999999988776656889999999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
+++. |+++||||+|..+.++.+..+.+|..+.+..+......+...+..+... .|...|..
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a-~K~aaLl~ 253 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA-EKEAALLS 253 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH-HHHHHHHH
Confidence 9876 4899999999999999999999999988776666666666666666554 45555555
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
++.... ..++++|||.+..+++.+...|...|+.+..++|.|++..|..-+.+|+.++..+||.||+++||+|||..+.
T Consensus 254 il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 254 ILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 444444 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceec
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~ 463 (480)
|||||.| .+...|+||+||+.|+|+.|.+|.|+.+. +..++-.+..+++.++.-.
T Consensus 333 vinyd~p--------~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 333 VINYDFP--------PDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cccccCC--------CCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhhhcCCceeec
Confidence 9999999 78889999999999999999999999975 5556677999999877544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-49 Score=410.56 Aligned_cols=320 Identities=17% Similarity=0.183 Sum_probs=242.9
Q ss_pred Ccc--cCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 101 TFE--DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 101 ~f~--~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.|. .++....+...+...||+..++|+|.++|+.++.| +|+++++|||+|||++|++|++.. ++.+|||+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~G--rDVLVimPTGSGKSLcYQLPAL~~------~GiTLVIS 507 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSG--YDVFVLMPTGGGKSLTYQLPALIC------PGITLVIS 507 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEe
Confidence 355 46777788888888899999999999999999999 999999999999999999999864 35799999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--cc--CCCCCCCeEEEeChHHHHH---HHhc-Ccc-ccCceE
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--IS--KRPPVTAQVVIGTPGTIKK---WMSA-KKL-GFSRLK 249 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~I~v~Tp~~l~~---~l~~-~~~-~~~~~~ 249 (480)
|+++|+.++...+.. .++....+.++....... .. ......++|+|+||++|.. ++.. ..+ ....+.
T Consensus 508 PLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Ls 583 (1195)
T PLN03137 508 PLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLA 583 (1195)
T ss_pred CHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccc
Confidence 999999865555544 356665555544322111 00 1112457999999999852 1221 111 134588
Q ss_pred EEEEcCchhhhhh----------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEc
Q 011667 250 ILVYDEADHMLDE----------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 307 (480)
Q Consensus 250 ~lViDEah~l~~~----------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (480)
+|||||||+++++ +++||||++..+...+...+.....+... ......++. +...
T Consensus 584 lIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL~--y~Vv 660 (1195)
T PLN03137 584 RFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNLW--YSVV 660 (1195)
T ss_pred eeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccceE--EEEe
Confidence 9999999998763 68999999998887666655433222221 112222222 2222
Q ss_pred CchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 011667 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387 (480)
Q Consensus 308 ~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 387 (480)
+........+...+... ......||||.+++.++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||++
T Consensus 661 ~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA 739 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA 739 (1195)
T ss_pred ccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech
Confidence 22222233343323222 23467899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 388 ~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
+++|||+|+|++||||++| .|++.|+||+|||||.|.+|.|++||+..|
T Consensus 740 FGMGIDkPDVR~VIHydlP--------kSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 740 FGMGINKPDVRFVIHHSLP--------KSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred hhcCCCccCCcEEEEcCCC--------CCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 9999999999999999999 899999999999999999999999997654
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-49 Score=395.57 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=231.5
Q ss_pred HHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 115 l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
|.+.+||..|+|+|.++|+.+++| +|+++++|||||||++|++|++.. +..+|||+|+++|+.|+...+..+
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g--~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLG--RDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 445589999999999999999999 899999999999999999999853 457999999999999998888764
Q ss_pred hcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeChHHHHHHHh-cCcc-ccCceEEEEEcCchhhhh---------
Q 011667 195 GKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMS-AKKL-GFSRLKILVYDEADHMLD--------- 261 (480)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~-~~~~-~~~~~~~lViDEah~l~~--------- 261 (480)
++....+.+....... .........++|+++||+++..... ...+ ...++++|||||||++.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 4544444433322100 0111123347899999999753221 0112 467899999999998764
Q ss_pred -------------hheeeeccccHHHHHHHHHHhc--ccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcc
Q 011667 262 -------------EVLLFSATFNETVKNFVTRIVK--DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326 (480)
Q Consensus 262 -------------~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 326 (480)
+++++|||+++.+...+...+. .+..+... ....++....... .......+...+... .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~~--~~~~~~~l~~~l~~~-~ 224 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEVRRK--TPKILEDLLRFIRKE-F 224 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEEEeC--CccHHHHHHHHHHHh-c
Confidence 2789999999887766655543 23222211 1122222222211 112333444433322 2
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p 406 (480)
....+||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||||++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 407 ~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
.|++.|+||+||+||.|.+|.|++|++..|
T Consensus 305 --------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 305 --------KSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred --------CCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 899999999999999999999999998664
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-47 Score=393.05 Aligned_cols=311 Identities=17% Similarity=0.248 Sum_probs=235.0
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
++.....+.+.+.+||..|+|+|.++|+.+++| +|+++.+|||+|||++|++|++.. ...+|||+|+++|+.
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g--~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSG--RDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMK 79 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHH
Confidence 334444555666689999999999999999999 999999999999999999999854 347999999999999
Q ss_pred HHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-
Q 011667 186 QNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE- 262 (480)
Q Consensus 186 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~- 262 (480)
|+.+.+..+ ++...+..+....... ..........+|+++||+++........+...++++|||||||++.++
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccccc
Confidence 999888765 4444444333322111 011122234789999999986322222334457899999999987652
Q ss_pred ---------------------heeeeccccHHHHHHHHHHhc--ccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 263 ---------------------VLLFSATFNETVKNFVTRIVK--DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 263 ---------------------~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
++++|||++......+...+. +|.... . .....++...... .......+..
T Consensus 156 ~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~--~~~r~nl~~~v~~---~~~~~~~l~~ 229 (607)
T PRK11057 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIRYTLVE---KFKPLDQLMR 229 (607)
T ss_pred CcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-C--CCCCCcceeeeee---ccchHHHHHH
Confidence 689999999877655544432 222221 1 1111222221111 1122333333
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+.. ....++||||+++++++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++
T Consensus 230 ~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 230 YVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 2222 25678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
||||++| .|.+.|+||+||+||.|.+|.|++|++..|
T Consensus 308 VI~~d~P--------~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 308 VVHFDIP--------RNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EEEeCCC--------CCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 9999999 899999999999999999999999998654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.8e-46 Score=385.96 Aligned_cols=306 Identities=17% Similarity=0.217 Sum_probs=235.9
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
+.|.+.+||..++|+|.++|+.+++| +|+++++|||+|||++|++|++.. +..++||+|+++|+.|+...++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g--~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDG--RDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHH
Confidence 34555689999999999999999999 999999999999999999999853 3478999999999999998888
Q ss_pred HHhcccCceeeEeecCCCCCcc-c-ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh--------
Q 011667 193 KMGKHTGITSECAVPTDSTNYV-P-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------- 262 (480)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-------- 262 (480)
.+ ++.+....++...... . .........+|+++||++|........+...++++|||||||++..+
T Consensus 75 ~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 AA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 75 4554444443322211 0 11122345789999999986433333445668999999999998642
Q ss_pred --------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccC
Q 011667 263 --------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 328 (480)
Q Consensus 263 --------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 328 (480)
++++|||.+..+...+...+.......... .....++....... ..+...+.+.+... ..
T Consensus 151 ~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~---~~~~~~l~~~l~~~--~~ 224 (591)
T TIGR01389 151 QRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKK---NNKQKFLLDYLKKH--RG 224 (591)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeC---CCHHHHHHHHHHhc--CC
Confidence 689999999888776666654322111111 11122222222221 23344444433332 35
Q ss_pred CcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK 408 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~ 408 (480)
.++||||++++.++.++..|...++.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++++||||++|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p-- 302 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP-- 302 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 409 HGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 409 ~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
.|.+.|+||+||+||.|..|.|++||+..|
T Consensus 303 ------~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 303 ------GNLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred ------CCHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 899999999999999999999998887554
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.4e-46 Score=390.91 Aligned_cols=339 Identities=21% Similarity=0.265 Sum_probs=247.9
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhccc-ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.|+++++++.+++.+.+ .||.+|+|+|.++++. ++.| +|++++||||||||++|.+|++..+.. +.++||++|
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeC
Confidence 68899999999999986 8999999999999998 6677 899999999999999999999998853 568999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
+++||.|+++.+..+.. .++++....|+..... .....++|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~-----~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRD-----EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc-----cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999998753 4777766665543222 11234799999999999998876666789999999999987
Q ss_pred hh---------------------hheeeeccccHHHHHHHHHHhcc--------cceeeec---cccccccccEEEEEEc
Q 011667 260 LD---------------------EVLLFSATFNETVKNFVTRIVKD--------YNQLFVK---KEELSLESVKQYKVYC 307 (480)
Q Consensus 260 ~~---------------------~~~~~SAT~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~ 307 (480)
.+ |++++|||+++.. . +..++.. |..+... ........ .+.....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~-~-la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~ 226 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNAD-E-LADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEV 226 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHH-H-HHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCC
Confidence 64 4899999997521 1 2222221 1111000 00000000 0011111
Q ss_pred CchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC------------------------------------
Q 011667 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------------------------------------ 351 (480)
Q Consensus 308 ~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~------------------------------------ 351 (480)
......... +.+.....+++||||++++.|+.++..|...
T Consensus 227 ~~~~~~~~~----~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 227 PSKDDTLNL----VLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred ccchHHHHH----HHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 111122222 3333346789999999999999998887542
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----ccCCCCCCCCCCCCccccccccccc
Q 011667 352 GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRA 427 (480)
Q Consensus 352 ~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr~GR~ 427 (480)
...+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ||... +. .+.+..+|.||+|||
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~--~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GM--QPIPVLEYHQMAGRA 379 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-Cc--eeCCHHHHHHHhhcC
Confidence 136889999999999999999999999999999999999999999999997 66321 10 116889999999999
Q ss_pred ccCCCc--eeEEEEeeCCccHHHHHHHHHHhCCcceec
Q 011667 428 GRFGRK--GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 463 (480)
Q Consensus 428 gR~g~~--g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~ 463 (480)
||.|.+ |.++++..+.++ ..+.+++++......+
T Consensus 380 GR~g~d~~G~~ii~~~~~~~--~~~~~~~~l~~~~~~i 415 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYDE--LDELFERYIWADPEDV 415 (737)
T ss_pred CCCCCCCCceEEEEecCchh--HHHHHHHHHhCCCCce
Confidence 999865 999988864332 2333456664444333
No 42
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-47 Score=324.23 Aligned_cols=317 Identities=31% Similarity=0.569 Sum_probs=270.1
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.+.|.++-|.|++++++.. .||..|+.+|..+||...-| .|++++|..|.|||..|.+..|+.+.+-.....+|++|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailg--mdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmc 117 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMC 117 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhc--chhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEe
Confidence 4578999999999999997 99999999999999999999 99999999999999999999999998876677899999
Q ss_pred cCHHHHHHHHHHHHHHhcccC-ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 179 PTRELAIQNLEVLRKMGKHTG-ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
.||+||.|+..+..++..... +++...+|+........ .+...++|+|+||||++.+.+++.+.+++++.+|+||||
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee--~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE--LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH--HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 999999999998888877655 67777777776554322 222368999999999999999999999999999999999
Q ss_pred hhhhh-------------------heeeeccccHHHHHHHHHHhcccceeeeccc-cccccccEEEEEEcCchhHHHHHH
Q 011667 258 HMLDE-------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVI 317 (480)
Q Consensus 258 ~l~~~-------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l 317 (480)
.|+.+ .+.||||++++++..+..++.+|..+++..+ ..++.++.|+|+...+. .|...+
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~-eKNrkl 274 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN-EKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh-hhhhhh
Confidence 99874 7899999999999999999999999988765 45677888888876543 333333
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 397 (480)
.+ ++... ...+++||+.|... | + | +.+ ||||++++||+||..+
T Consensus 275 ~d-LLd~L-eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdierv 317 (387)
T KOG0329|consen 275 ND-LLDVL-EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERV 317 (387)
T ss_pred hh-hhhhh-hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccc
Confidence 33 22222 34689999987655 0 0 2 123 8999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCC
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 466 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~ 466 (480)
+.|||||+| .++.+|+||+|||||.|.+|.+|+|+++..+...+..+...+...|.++|..
T Consensus 318 Ni~~NYdmp--------~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 318 NIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeeccCCC--------CCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999 8999999999999999999999999999999999999999999999999866
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-45 Score=391.68 Aligned_cols=342 Identities=20% Similarity=0.250 Sum_probs=237.0
Q ss_pred CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC------CCCCeEEEEecC
Q 011667 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPT 180 (480)
Q Consensus 107 l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~------~~~~~~lil~Pt 180 (480)
+++.+.+.+. .+|..|+|+|.++||.+++| +|++++||||||||++|.+|+++.+... ..+.++|||+|+
T Consensus 18 l~~~v~~~~~--~~~~~~tpiQ~~Ai~~il~g--~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFK--EKFGTFTPPQRYAIPLIHEG--KNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHH--HccCCCCHHHHHHHHHHHcC--CCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 5666666654 37999999999999999999 9999999999999999999999887431 235689999999
Q ss_pred HHHHHHHHHHHHH-------Hh----ccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc--ccC
Q 011667 181 RELAIQNLEVLRK-------MG----KHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL--GFS 246 (480)
Q Consensus 181 ~~La~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~--~~~ 246 (480)
++|+.|+++.+.. ++ ... ++.+...+|+..... ........++|+|+||++|..++....+ .+.
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~--r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~ 171 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYE--KQKMLKKPPHILITTPESLAILLNSPKFREKLR 171 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH--HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHh
Confidence 9999999886653 22 122 445555555543322 1122233589999999999888765433 478
Q ss_pred ceEEEEEcCchhhhh----------------------hheeeeccccHH--HHHHHHHHhc--ccceee-eccccccccc
Q 011667 247 RLKILVYDEADHMLD----------------------EVLLFSATFNET--VKNFVTRIVK--DYNQLF-VKKEELSLES 299 (480)
Q Consensus 247 ~~~~lViDEah~l~~----------------------~~~~~SAT~~~~--~~~~~~~~~~--~~~~~~-~~~~~~~~~~ 299 (480)
++++||+||||.+.+ |.+++|||+++. +..++..... .+..+. +.........
T Consensus 172 ~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~ 251 (876)
T PRK13767 172 TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFD 251 (876)
T ss_pred cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccce
Confidence 999999999999863 368999999752 2222211100 011111 1111000000
Q ss_pred cEEE-----EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC------CCcEEEecCCCCHHHHH
Q 011667 300 VKQY-----KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERD 368 (480)
Q Consensus 300 ~~~~-----~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~ 368 (480)
+... .... ........+...+.......+++||||+|+..|+.++..|... +..+..+||+|++.+|.
T Consensus 252 i~v~~p~~~l~~~-~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 252 IKVISPVDDLIHT-PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred EEEeccCcccccc-ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 0000 0000 1111222333334444445789999999999999999999763 46799999999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccC-CCceeEEEEeeCCccHH
Q 011667 369 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLMDGDDMI 447 (480)
Q Consensus 369 ~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~-g~~g~~~~l~~~~~~~~ 447 (480)
.+++.|++|.++|||||+++++|||+|++++||+|+.| .+...|+||+||+||. |..+.++++..+.++..
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P--------~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSP--------KSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLV 402 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCC--------CCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHH
Confidence 99999999999999999999999999999999999999 8999999999999986 33444554555444422
Q ss_pred H-HHHHHHHhCCcceec
Q 011667 448 I-MEKIERYFDIKVTEV 463 (480)
Q Consensus 448 ~-~~~i~~~l~~~~~~~ 463 (480)
. ...++......++.+
T Consensus 403 e~~~~~~~~~~~~ie~~ 419 (876)
T PRK13767 403 ECAVLLKKAREGKIDRV 419 (876)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 1 112334444445443
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-44 Score=379.72 Aligned_cols=316 Identities=20% Similarity=0.208 Sum_probs=243.5
Q ss_pred CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC----CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 105 ~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
+..+..+.+.+...++|. |||+|.++|+.++++ ..+|.+++|+||||||.+|++|++..+.. +.+++|++||
T Consensus 434 ~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT 509 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPT 509 (926)
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCc
Confidence 455667788887778996 999999999999885 23689999999999999999999988754 4689999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCc-cccc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPIS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
++||.|+++.+.+++...++.+..+.+..+... .... ......++|+|+||..+ ...+.+.++++|||||+|+
T Consensus 510 ~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 510 TLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc
Confidence 999999999999988877877766665543221 1111 11223589999999432 2356789999999999999
Q ss_pred hhh-------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhc
Q 011667 259 MLD-------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325 (480)
Q Consensus 259 l~~-------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 325 (480)
+.. ++++||||+.+...........++..+...... ...+..++..... . .+...+....
T Consensus 585 fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~--~---~i~~~i~~el 657 (926)
T TIGR00580 585 FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP--E---LVREAIRREL 657 (926)
T ss_pred cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH--H---HHHHHHHHHH
Confidence 743 489999998766554444444444444432221 1234444433221 1 1112222333
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
..+++++|||++++.++.+++.|... +.++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe
Confidence 36789999999999999999999875 7899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+.|. .+..+|.||+||+||.|+.|.|++|+.+.
T Consensus 738 ~a~~-------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 RADK-------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCC-------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9984 35668999999999999999999998654
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-44 Score=376.54 Aligned_cols=322 Identities=17% Similarity=0.201 Sum_probs=239.3
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhccc-ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+|+++++++.+.+.+.+ .||..|+|+|.++++. ++.| +|+++++|||||||++|.+|++..+.. .+.++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 67899999999999987 8999999999999986 6777 999999999999999999999988754 2568999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
+++|+.|+++.+..+. ..++.+....|...... .....++|+|+||+++..++......++++++||+||+|.+
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~-----~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTD-----EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCch-----hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 9999999999998864 35777766666543321 11235799999999999988876667889999999999988
Q ss_pred hh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccc--cccEEEEEEcCch-hHH-HHHH
Q 011667 260 LD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL--ESVKQYKVYCPDE-LAK-VMVI 317 (480)
Q Consensus 260 ~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~k-~~~l 317 (480)
.+ |++++|||+++. ..+. .++.... +......... ....+.+....+. ..+ ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la-~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELA-EWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHH-HHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 64 489999999753 2323 3443221 1111111111 0011111111111 000 1112
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh---------------------------------CCCcEEEecCCCCH
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKD---------------------------------FGYEVTTIMGATIQ 364 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---------------------------------~~~~~~~l~~~~~~ 364 (480)
...+.+.....+++||||++++.|+.++..|.. ....+..+|++|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 222334344578999999999999887766632 12358999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-------ccCCCCCCCCCCCCcccccccccccccCC--Ccee
Q 011667 365 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-------YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGV 435 (480)
Q Consensus 365 ~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~-------~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~ 435 (480)
.+|..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. .+..+|.||+|||||.| ..|.
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~-------~~~~~~~Qm~GRAGR~~~d~~G~ 380 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWED-------IPVLEIQQMMGRAGRPKYDEVGE 380 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCcee-------CCHHHHHHhhhccCCCCcCCCce
Confidence 99999999999999999999999999999999999995 33331 34678999999999975 5799
Q ss_pred EEEEeeCC
Q 011667 436 VFNLLMDG 443 (480)
Q Consensus 436 ~~~l~~~~ 443 (480)
++++....
T Consensus 381 ~ii~~~~~ 388 (720)
T PRK00254 381 AIIVATTE 388 (720)
T ss_pred EEEEecCc
Confidence 99888653
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-43 Score=362.81 Aligned_cols=304 Identities=20% Similarity=0.209 Sum_probs=227.9
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCc-cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE-EecCHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYR-NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC-ICPTRELAIQNLEV 190 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~-~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li-l~Pt~~La~q~~~~ 190 (480)
+.+....||. |+|||.++||.++.| + ++++++|||||||.++.++.+.. ......++.|| ++|||+||.|+++.
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G--~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAG--QPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcC--CCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHH
Confidence 3444446898 999999999999999 6 68888999999999776555533 23333455565 66999999999999
Q ss_pred HHHHhccc-----------------------CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc----
Q 011667 191 LRKMGKHT-----------------------GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL---- 243 (480)
Q Consensus 191 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~---- 243 (480)
+.+++..+ ++++.+++|+...+. .+.....+++|+|+|+ +++.++.+
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~--q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND--EWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH--HHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 99998755 366777777765443 4455566899999995 44444443
Q ss_pred ------------ccCceEEEEEcCchhh----------hh-----------hheeeeccccHHHHHHHHHHhcccceeee
Q 011667 244 ------------GFSRLKILVYDEADHM----------LD-----------EVLLFSATFNETVKNFVTRIVKDYNQLFV 290 (480)
Q Consensus 244 ------------~~~~~~~lViDEah~l----------~~-----------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 290 (480)
.+.++++||+||||.. .. |+++||||++..+......++.++..+.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V 235 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPV 235 (844)
T ss_pred ccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeec
Confidence 2678999999999941 11 47899999998888777777766665555
Q ss_pred ccccccccccEEEEEEcCchhHHHHHHHHHHHHh-cccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHH-
Q 011667 291 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD- 368 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~- 368 (480)
.........+.++ +.... ..+...+...+... ....+++|||||+++.++.+++.|...++ ..+||+|++.+|.
T Consensus 236 ~~~~l~a~ki~q~-v~v~~-e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 236 LKKRLAAKKIVKL-VPPSD-EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDD 311 (844)
T ss_pred ccccccccceEEE-EecCh-HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhh
Confidence 5555555555654 33332 33433333322222 23567899999999999999999998876 8999999999999
Q ss_pred ----HHHHHHhc----CC-------CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc
Q 011667 369 ----KIVKEFKD----GL-------TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 433 (480)
Q Consensus 369 ----~~~~~f~~----g~-------~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~ 433 (480)
.+++.|++ |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP----------~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP----------FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC----------HHHHHHHhcccCCCCCC
Confidence 88999987 44 679999999999999986 899998877 68899999999999985
Q ss_pred e-eEEEEee
Q 011667 434 G-VVFNLLM 441 (480)
Q Consensus 434 g-~~~~l~~ 441 (480)
| ..++++.
T Consensus 381 ~~~~i~vv~ 389 (844)
T TIGR02621 381 QACQIAVVH 389 (844)
T ss_pred CCceEEEEe
Confidence 4 4455664
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.7e-43 Score=364.29 Aligned_cols=314 Identities=23% Similarity=0.236 Sum_probs=236.9
Q ss_pred CHHHHHHHHhhcCCCCChHHHHhhcccccCCC----CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 108 SPELLKGLYVEMKFQKPSKIQAISLPMILTPP----YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 108 ~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~----~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
...+.+.+...++|. ||++|.++++.++++. ..+.+++|+||||||++|++|++..+.. +.+++|++||++|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~L 322 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEIL 322 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHH
Confidence 356677777778995 9999999999998862 2479999999999999999999988753 6789999999999
Q ss_pred HHHHHHHHHHHhcccCceeeEeecCCCCCcc-c-ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYV-P-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
|.|+++.+++++...++.+..++|+...... . ........++|+|+||+.+.+ .+.+.+++++|+||+|++..
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH
Confidence 9999999999998888888888777653211 1 112222358999999988743 44578899999999998632
Q ss_pred -------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccC
Q 011667 262 -------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 328 (480)
Q Consensus 262 -------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 328 (480)
++++||||+.+....+. ...+.....+.........+........... .+.+.+.......
T Consensus 398 ~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~----~~~~~i~~~~~~g 471 (681)
T PRK10917 398 EQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPDSRRD----EVYERIREEIAKG 471 (681)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCcccHH----HHHHHHHHHHHcC
Confidence 48999999765543322 2222222222211111223444433322221 2223333444567
Q ss_pred CcEEEEeCch--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 011667 329 GQTIIFVRTK--------NSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 398 (480)
Q Consensus 329 ~~~lVf~~s~--------~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 398 (480)
.+++|||+.+ ..+..+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|+++
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~ 551 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNAT 551 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCc
Confidence 8999999964 3456677777765 57899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+||++++|. .+...|.||+||+||.|.+|.|++++.+.
T Consensus 552 ~VIi~~~~r-------~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 552 VMVIENAER-------FGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred EEEEeCCCC-------CCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 999999994 24677889999999999999999998644
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.3e-43 Score=374.75 Aligned_cols=347 Identities=16% Similarity=0.175 Sum_probs=255.2
Q ss_pred CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC----CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 105 ~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
+..+..+.+.+...++| .||++|.++|+.++++ ..+|++++|+||+|||.+|+.+++..+. .+.+++||+||
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT 658 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPT 658 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCc
Confidence 34455667777677899 5999999999999986 2368999999999999999888876654 36789999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc-cc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP-IS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
++||.|+++.+.+++...++.+.++.++.+..... .. ......++|+|+||+.+ . ..+.+.++++|||||+|+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhh
Confidence 99999999999987776677776766665433221 11 11123579999999744 2 345678999999999999
Q ss_pred hhh-------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhc
Q 011667 259 MLD-------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325 (480)
Q Consensus 259 l~~-------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 325 (480)
+.. ++++||||+.+....+....+.++..+...... ...+.+..........+.. +....
T Consensus 734 fG~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~-----il~el 806 (1147)
T PRK10689 734 FGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREA-----ILREI 806 (1147)
T ss_pred cchhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHH-----HHHHH
Confidence 743 489999998877777666667777666543322 1234444443322211211 22222
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
..+++++|||++++.++.+++.|.+. +..+..+||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||..
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 25689999999999999999999887 7899999999999999999999999999999999999999999999999965
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc--cHHHHHHHHHHhCCcceecCCCHHHHHHHHHHcCC
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD--DMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 479 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
+... .+..+|+||+||+||.|+.|.|++++.+.. .....++++. +.+..+-...|+-+.+++.|
T Consensus 887 ~ad~-------fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~-----~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 887 RADH-------FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA-----IASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred cCCC-------CCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHH-----HHHhcCCcchHHHHHHHHHh
Confidence 5442 235569999999999999999998875432 1112222222 12222333467777766543
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-43 Score=368.25 Aligned_cols=333 Identities=19% Similarity=0.193 Sum_probs=242.4
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
.|+++++++.+++.+.. .+|. ++++|.++++.++.| ++++++||||||||+++.++++..+.. +.+++|++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~--~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKG--ENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcC--CcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEech
Confidence 57889999999999976 7887 999999999999888 999999999999999999999988754 4589999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh
Q 011667 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 260 (480)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 260 (480)
++||.|+++.+.++. ..+..+...+|+...... ....++|+|+||+++..++.+....+.++++||+||||++.
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~-----~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD-----FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh-----hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 999999999998864 356666666654432211 11247999999999999888766668899999999999985
Q ss_pred h---------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEE-----EEcCchhHHH
Q 011667 261 D---------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYK-----VYCPDELAKV 314 (480)
Q Consensus 261 ~---------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~k~ 314 (480)
+ +++++|||+++. ..+ ..++.... +..... +..+.... ..........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~l-a~wl~~~~-~~~~~r---~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NEL-AQWLNASL-IKSNFR---PVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHH-HHHhCCCc-cCCCCC---CCCeEEEEEecCeeeeccccccc
Confidence 3 379999999753 222 23332211 111111 11111100 0111111111
Q ss_pred HHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-------------------------CCcEEEecCCCCHHHHHH
Q 011667 315 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-------------------------GYEVTTIMGATIQEERDK 369 (480)
Q Consensus 315 ~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-------------------------~~~~~~l~~~~~~~~r~~ 369 (480)
..+...+.+.....+++||||++++.++.++..|... ...+..+||+|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1122223343446789999999999999999888653 124788999999999999
Q ss_pred HHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCC-CCCCCCcccccccccccccCCC--ceeEEEEeeCCccH
Q 011667 370 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG-KHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDM 446 (480)
Q Consensus 370 ~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~-~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~~~~~~ 446 (480)
+++.|++|.++|||||+++++|+|+|+. .||+++.+.... ...+.+..+|.||+|||||.|. .|.+++++...++.
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 9999999999999999999999999985 566666654332 1223578889999999999984 67788777654332
Q ss_pred HHHHHHHHHh
Q 011667 447 IIMEKIERYF 456 (480)
Q Consensus 447 ~~~~~i~~~l 456 (480)
..+.+++
T Consensus 382 ---~~~~~~l 388 (674)
T PRK01172 382 ---DAAKKYL 388 (674)
T ss_pred ---HHHHHHH
Confidence 3345555
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.5e-42 Score=358.33 Aligned_cols=313 Identities=23% Similarity=0.276 Sum_probs=232.7
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCC----CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPP----YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~----~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
..++..+.+.++| +||++|.++|+.++++. ..+.+++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA 297 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILA 297 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHH
Confidence 3555555566899 59999999999998762 1368999999999999999999988764 56899999999999
Q ss_pred HHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh--
Q 011667 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-- 260 (480)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~-- 260 (480)
.|+++.+.+++...++.+..++++...... .........++|+|+||+.+.+ .+.+.++++||+||+|++.
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~ 372 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE 372 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH
Confidence 999999999998888888888777643321 1112223357999999998754 4567889999999999842
Q ss_pred --------------hhheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcc
Q 011667 261 --------------DEVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326 (480)
Q Consensus 261 --------------~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 326 (480)
.++++||||+.+....+. ...+.....+.........+.......... ..+...+.+...
T Consensus 373 qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~----~~~~~~i~~~l~ 446 (630)
T TIGR00643 373 QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKHDEK----DIVYEFIEEEIA 446 (630)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCcchH----HHHHHHHHHHHH
Confidence 248999999765432221 112111111111111112233333322211 223333444444
Q ss_pred cCCcEEEEeCch--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 011667 327 KMGQTIIFVRTK--------NSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 327 ~~~~~lVf~~s~--------~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
...+++|||+.. ..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 678999999976 4566777777653 788999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+++||+++.|. .+...|.||+||+||.|.+|.|++++.+.
T Consensus 527 v~~VIi~~~~r-------~gls~lhQ~~GRvGR~g~~g~~il~~~~~ 566 (630)
T TIGR00643 527 ATVMVIEDAER-------FGLSQLHQLRGRVGRGDHQSYCLLVYKNP 566 (630)
T ss_pred CcEEEEeCCCc-------CCHHHHHHHhhhcccCCCCcEEEEEECCC
Confidence 99999999994 25677899999999999999999988433
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.6e-42 Score=371.31 Aligned_cols=342 Identities=22% Similarity=0.282 Sum_probs=255.8
Q ss_pred HHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 111 l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
+.+.+.+.+|+ .|+++|..++|.++.| +|++++||||||||. |.++++..+.. .+.+++||+||++|+.|+++.
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g--~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLG--ESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCC--CcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHH
Confidence 33445454687 7999999999999999 999999999999996 55555555443 367899999999999999999
Q ss_pred HHHHhcccCceeeEeecCCCCC---ccccc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----
Q 011667 191 LRKMGKHTGITSECAVPTDSTN---YVPIS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----- 261 (480)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----- 261 (480)
++.++...++.+....++.+.. ..... ......++|+|+||++|.+++. .+...++++||+||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 9999988887766666655421 11111 1122358999999999999876 34556799999999999873
Q ss_pred -------------------------------------------------hheeeeccccHH-HHHHHHHHhcccceeeec
Q 011667 262 -------------------------------------------------EVLLFSATFNET-VKNFVTRIVKDYNQLFVK 291 (480)
Q Consensus 262 -------------------------------------------------~~~~~SAT~~~~-~~~~~~~~~~~~~~~~~~ 291 (480)
|+++||||+++. +.. .++..+..+.+.
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 368999999864 432 223344445555
Q ss_pred cccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhh---HHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 011667 292 KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS---ASALHKALKDFGYEVTTIMGATIQEERD 368 (480)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~ 368 (480)
.......++.+.++.+. .+...+..++... ..++||||+++.. ++.++..|...|+++..+||+| .
T Consensus 298 ~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE---DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred CcccccCCceEEEEEcc---cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 55556677888887665 3444455533332 3589999999887 9999999999999999999999 2
Q ss_pred HHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEccCCCCCC---------------------------------
Q 011667 369 KIVKEFKDGLTQVLIS----TDVLARGFDQQQ-VNLIVNYDPPVKHG--------------------------------- 410 (480)
Q Consensus 369 ~~~~~f~~g~~~iLv~----T~~~~~Gldi~~-v~~Vi~~~~p~~~~--------------------------------- 410 (480)
+.+++|++|+++|||| ||+++||||+|+ +++|||||.|....
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 446 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLLPLIKNDKEIRELVS 446 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhccchhhhhHHHHHHH
Confidence 3459999999999999 699999999999 89999999997100
Q ss_pred ------------------------------------------------------------------CCCCCCcccccccc
Q 011667 411 ------------------------------------------------------------------KHLEPDCEVYLHRI 424 (480)
Q Consensus 411 ------------------------------------------------------------------~~~~~s~~~y~qr~ 424 (480)
..+..++.+|+|..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~tYiqas 526 (1176)
T PRK09401 447 YLRRRLRNLSPYELQMLAFAIREGELLEGVLEELRSLVKEYLKDEEFLEKISESGDLVLRKEEGKYYIVIPDVTTYIQAS 526 (1176)
T ss_pred HHHHHHHhcChHHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHHHHHHhhcCCceEEEeeCCeEEEEEcCcchheecc
Confidence 00135778999999
Q ss_pred ccccc--CC--CceeEEEEeeCCccHHHHHHHHHHhCCccee---cCCCHHHHHHHHHHc
Q 011667 425 GRAGR--FG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTE---VRNSDEDFKAALKAA 477 (480)
Q Consensus 425 GR~gR--~g--~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~ 477 (480)
|||.| +| .+|.+++|+ |+...+..+.+.+...+.+ .+.+..+++.++++.
T Consensus 527 GRtSrl~~gg~t~glsv~l~---dd~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 583 (1176)
T PRK09401 527 GRTSRLYAGGLTKGLSVLLV---DDEKLFESLKKKLRWLLPEIEFKPLSEVDLEELLREI 583 (1176)
T ss_pred cchhcccCCCccceeEEEEe---cCHHHHHHHHHHHHHhcCCceeeEcCccCHHHHHHHH
Confidence 99999 33 489999888 4566778887777654333 335566666666653
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.3e-42 Score=350.10 Aligned_cols=318 Identities=21% Similarity=0.280 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-----CCCCeEEEEecC
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-----LKAPQALCICPT 180 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-----~~~~~~lil~Pt 180 (480)
-+++.+.+.+.. .|..|||.|.+|||.+.+| +|+++.||||||||+++.+|+++.+... ..+..+|+|+|.
T Consensus 7 ~l~~~v~~~~~~--~~~~~t~~Q~~a~~~i~~G--~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPL 82 (814)
T COG1201 7 ILDPRVREWFKR--KFTSLTPPQRYAIPEIHSG--ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPL 82 (814)
T ss_pred hcCHHHHHHHHH--hcCCCCHHHHHHHHHHhCC--CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcH
Confidence 367888888876 4999999999999999999 9999999999999999999999998654 234679999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc--cccCceEEEEEcCchh
Q 011667 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADH 258 (480)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~ 258 (480)
|+|...+.+.+..++..+|+.+..-+|.+.... ........+||+|+||+.|.-++.... -.|.+++++|+||.|.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~e--r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSE--KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHH--hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 999999999999999999999866666665443 334444569999999999988887643 2588999999999999
Q ss_pred hhh---------------------hheeeeccccHHHHHHHHHHhccc---ceeeeccccccccccEEEEEEcCch----
Q 011667 259 MLD---------------------EVLLFSATFNETVKNFVTRIVKDY---NQLFVKKEELSLESVKQYKVYCPDE---- 310 (480)
Q Consensus 259 l~~---------------------~~~~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---- 310 (480)
+.+ |.+++|||..+... +.+|+... ..+.... .... ...........
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~--varfL~g~~~~~~Iv~~~-~~k~--~~i~v~~p~~~~~~~ 235 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEE--VAKFLVGFGDPCEIVDVS-AAKK--LEIKVISPVEDLIYD 235 (814)
T ss_pred hhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHH--HHHHhcCCCCceEEEEcc-cCCc--ceEEEEecCCccccc
Confidence 865 48999999984432 33343322 1222111 1111 11111111111
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG-YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~ 389 (480)
..........+.+..+....+|||+||+..++.++..|.+.+ ..+..+||+++.+.|..+.++|++|+.+++|||..++
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh
Confidence 123333444466666677799999999999999999999886 8999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccC-CCceeEEEEeeC
Q 011667 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLMD 442 (480)
Q Consensus 390 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~-g~~g~~~~l~~~ 442 (480)
-|||+.+++.||+|+.| ++...++||+||+|+. |..-+.+.+..+
T Consensus 316 LGIDiG~vdlVIq~~SP--------~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 316 LGIDIGDIDLVIQLGSP--------KSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hccccCCceEEEEeCCc--------HHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999 8999999999999883 444555555543
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.1e-41 Score=344.64 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=224.5
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchH---------hHHHHhhccC---CCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTC---------FVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~---------~~l~il~~l~---~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
..+|.++++.++.| ++++++|+||||||.+ |++|.+..+. ......+++|++|||+||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~g--kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISR--KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhC--CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHH
Confidence 46899999999999 9999999999999997 4444444432 23345689999999999999999887
Q ss_pred HHhcc---cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------
Q 011667 193 KMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------- 261 (480)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------- 261 (480)
+.... .+..+...+|+... ..........+|+|+|++.. ...++++++||+||||++..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~---~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD---ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIGDIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch---HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccchhHHHHH
Confidence 75543 23445555665542 11111222578999997631 12478899999999998643
Q ss_pred ---------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc---------hhHHHHHHHHHHHH
Q 011667 262 ---------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD---------ELAKVMVIRDRIFE 323 (480)
Q Consensus 262 ---------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~ 323 (480)
|+++||||++.++..+ ..++.++..+.+.. .....+.+.++.... ...+ ..+...+..
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~ 389 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKK 389 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHH
Confidence 5899999999887765 57888887776643 233556666654321 1111 112222333
Q ss_pred hc-ccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHH-hcCCCcEEEEccccccCCCCCCCCE
Q 011667 324 LG-EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEF-KDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 324 ~~-~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f-~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.. ...+++||||+++.+++.+++.|... ++.+..+||+|++. .++++.| ++|+.+|||||++++||||||+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 23568999999999999999999877 79999999999985 4666777 6899999999999999999999999
Q ss_pred EEEccCCCCC----CCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHH
Q 011667 400 IVNYDPPVKH----GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 453 (480)
Q Consensus 400 Vi~~~~p~~~----~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~ 453 (480)
||++|..+.+ ..+.+-|.++|.||+|||||. ++|.|+.|+++.+... +.++.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p-I~ri~ 523 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP-IKRID 523 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH-HHHHh
Confidence 9999933222 112234788999999999998 7999999998665332 44443
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-41 Score=351.77 Aligned_cols=313 Identities=15% Similarity=0.233 Sum_probs=228.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
++++++|+||||||++|.+++++... .+++++|+.|||++|.|+++.+.+ ++...+..+.+.+.+...
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~-------- 86 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK-------- 86 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc--------
Confidence 89999999999999999999998763 345899999999999999998864 444455555554443321
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh-hhh-------------------hheeeeccccHHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLD-------------------EVLLFSATFNETVKNFVT 279 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~-------------------~~~~~SAT~~~~~~~~~~ 279 (480)
....++|+|+|||+|++++.. ...++++++|||||+|. +++ ++++||||++... +.
T Consensus 87 ~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~ 162 (819)
T TIGR01970 87 VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LS 162 (819)
T ss_pred cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HH
Confidence 122478999999999999987 45789999999999995 332 3799999999764 45
Q ss_pred HHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHh---CCCcE
Q 011667 280 RIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKD---FGYEV 355 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~ 355 (480)
.++.++..+.+.... ..+.++|............+...+.... ...+.+||||+++.+++.++..|.. .++.+
T Consensus 163 ~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v 239 (819)
T TIGR01970 163 SLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLI 239 (819)
T ss_pred HHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEE
Confidence 666655555544332 2355555554332221111111122221 2458899999999999999999987 47899
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCC----------CCCccccccccc
Q 011667 356 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL----------EPDCEVYLHRIG 425 (480)
Q Consensus 356 ~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~----------~~s~~~y~qr~G 425 (480)
..+||+|++.+|.++++.|++|..+|||||+++++|||||+|++||+++.|+...++. +.|..+|.||+|
T Consensus 240 ~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~G 319 (819)
T TIGR01970 240 CPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAG 319 (819)
T ss_pred EEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999996543321 124556899999
Q ss_pred ccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHHHHHHHHHcC
Q 011667 426 RAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAG 478 (480)
Q Consensus 426 R~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
|+||. ++|.||.|+++.+ +..+..+...+|.. .++..+--.++..|
T Consensus 320 RAGR~-~~G~cyrL~t~~~----~~~l~~~~~PEI~r--~~L~~~~L~l~~~g 365 (819)
T TIGR01970 320 RAGRL-EPGVCYRLWSEEQ----HQRLPAQDEPEILQ--ADLSGLALELAQWG 365 (819)
T ss_pred hcCCC-CCCEEEEeCCHHH----HHhhhcCCCcceec--cCcHHHHHHHHHcC
Confidence 99998 7999999998532 22333333333322 34444444444444
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-42 Score=336.45 Aligned_cols=310 Identities=18% Similarity=0.239 Sum_probs=240.3
Q ss_pred HHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 112 LKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 112 ~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
...|...+|+..+++-|.++|..+++| +|+++..|||+||++||.+|++-. .+.+|||+|..+|...+.+.+
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g--~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSG--KDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcC--CcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHH
Confidence 345666789999999999999999999 999999999999999999999855 337999999999999999988
Q ss_pred HHHhcccCceeeEeecCCCCC-cc-cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-------
Q 011667 192 RKMGKHTGITSECAVPTDSTN-YV-PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------- 262 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~------- 262 (480)
+..+ +.+.++...-+.. .. ..........++++-+|++|..---.+.+.--.+.++||||||++..|
T Consensus 78 ~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 78 EAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred HHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHh
Confidence 8864 4444443332221 11 122233334789999999985332222223456889999999999885
Q ss_pred ---------------heeeeccccHHHHHHHHHHhcccc-eeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcc
Q 011667 263 ---------------VLLFSATFNETVKNFVTRIVKDYN-QLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326 (480)
Q Consensus 263 ---------------~~~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 326 (480)
++.++||.++.+...+...+..-. .++.. ....+++........+...++..+.+ ....
T Consensus 154 Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~---~~~~ 228 (590)
T COG0514 154 YRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLAT---VLPQ 228 (590)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHh---hccc
Confidence 789999999988887776654322 12221 12222333222222223333333322 1233
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 406 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p 406 (480)
..+..||||.|++.++.++++|...|+++..||++|...+|..+.++|.+++..|+|||.++++|||.|+|++||||++|
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP 308 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP 308 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccH
Q 011667 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 446 (480)
Q Consensus 407 ~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~ 446 (480)
.|++.|+|-+|||||.|.+..|++||++.|..
T Consensus 309 --------~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 309 --------GSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred --------CCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 99999999999999999999999999977644
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-40 Score=347.98 Aligned_cols=290 Identities=18% Similarity=0.248 Sum_probs=220.2
Q ss_pred ccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCC
Q 011667 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDST 211 (480)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~ 211 (480)
..+.++ ++++++|+||||||++|.+++++.... ..+++|++|||++|.|+++.+.. ++...+..+.+.+++...
T Consensus 15 ~~l~~~--~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~ 89 (812)
T PRK11664 15 TALKTA--PQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK 89 (812)
T ss_pred HHHHhC--CCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc
Confidence 334445 899999999999999999999976432 34899999999999999998864 455556666555544422
Q ss_pred CcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh-hh-------------------hheeeecccc
Q 011667 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM-LD-------------------EVLLFSATFN 271 (480)
Q Consensus 212 ~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~-------------------~~~~~SAT~~ 271 (480)
. ...++|+|+|||+|.+++.. ...++++++|||||+|.. ++ ++++||||++
T Consensus 90 ~--------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 90 V--------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred c--------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 1 12367999999999999886 457899999999999972 11 3899999998
Q ss_pred HHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHh
Q 011667 272 ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKD 350 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~ 350 (480)
... +..++.++..+..... ...+.++|...+........+...+.... ...+.+||||+++.+++.+++.|..
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred HHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 653 3556665555544332 22456666655433222222222222222 2468999999999999999999986
Q ss_pred ---CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCC----------CCCc
Q 011667 351 ---FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL----------EPDC 417 (480)
Q Consensus 351 ---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~----------~~s~ 417 (480)
.++.+..+||+|++.+|..++..|++|+.+|||||+++++|||||+|++||+++.++...++. ..|.
T Consensus 235 ~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 314 (812)
T PRK11664 235 RVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQ 314 (812)
T ss_pred hccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeech
Confidence 578899999999999999999999999999999999999999999999999999886543321 1245
Q ss_pred ccccccccccccCCCceeEEEEeeCC
Q 011667 418 EVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 418 ~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
.+|.||+||+||. ++|.||.|+++.
T Consensus 315 asa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 315 ASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred hhhhhhccccCCC-CCcEEEEecCHH
Confidence 6899999999998 699999999854
No 57
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.6e-41 Score=335.95 Aligned_cols=307 Identities=18% Similarity=0.202 Sum_probs=243.9
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+....+|+. |+|+|..+++.++.| + |+.+.||+|||++|++|++..... ++.++||+||++||.|.++++..
T Consensus 95 a~~R~lg~~-p~~VQ~~~~~~ll~G--~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 95 ASGRVLGQR-HFDVQLMGGLALLSG--R--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HHHHHhCCC-CChHHHHHHHHHhCC--C--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHH
Confidence 333446766 999999999999999 5 999999999999999999987543 56899999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcCc-------------------------cccCc
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK-------------------------LGFSR 247 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~-------------------------~~~~~ 247 (480)
+...+++.+.+++++.... ......+++|+|+|...| .++|..+- .....
T Consensus 167 l~~~lGlsv~~i~gg~~~~----~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPD----ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHhhcCCEEEEEeCCCCHH----HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 9999999999888875322 223334689999999887 45543321 12356
Q ss_pred eEEEEEcCchhhhhh-----------------------------------------------------------------
Q 011667 248 LKILVYDEADHMLDE----------------------------------------------------------------- 262 (480)
Q Consensus 248 ~~~lViDEah~l~~~----------------------------------------------------------------- 262 (480)
+.+.||||||.++-.
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 789999999987520
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence
Q ss_pred --------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEE
Q 011667 263 --------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIF 334 (480)
Q Consensus 263 --------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf 334 (480)
+.+||||.+.....+...+..++..+...... .....+.++.+ +...|...+.+.+........++|||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIf 479 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVG 479 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999988777777777666555444333 22233334444 35567788887666655456789999
Q ss_pred eCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEccCC
Q 011667 335 VRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---QVN-----LIVNYDPP 406 (480)
Q Consensus 335 ~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---~v~-----~Vi~~~~p 406 (480)
|+|++.++.++..|...|+++..+||.+. +|+..+..|..+...|+||||+++||+||+ +|. |||+|++|
T Consensus 480 t~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P 557 (656)
T PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERH 557 (656)
T ss_pred eCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCC
Confidence 99999999999999999999999999865 455555666666668999999999999999 666 99999999
Q ss_pred CCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 407 ~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
.|...|.||+|||||.|.+|.++.|++..|+
T Consensus 558 --------~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 558 --------DSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred --------CCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 8899999999999999999999999987543
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-41 Score=306.06 Aligned_cols=284 Identities=27% Similarity=0.386 Sum_probs=215.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccC---ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCc
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTG---ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 247 (480)
.+.++|+-|+|+|++|++..+++|-.++. ++....+++... ......+..+++|+|+||+|+.+.++.+.+.+..
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~--r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLK--RTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHh--HHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 45789999999999999998887755442 332234443322 2234445567999999999999999999999999
Q ss_pred eEEEEEcCchhhhhh------------------------heeeecccc-HHHHHHHHHHhcccceeeeccccccccccEE
Q 011667 248 LKILVYDEADHMLDE------------------------VLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQ 302 (480)
Q Consensus 248 ~~~lViDEah~l~~~------------------------~~~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (480)
++++|+||||.++.| .++.|||+. -++..+..+.+.-|..+........+..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999998874 788999976 2344445566666666666666655555555
Q ss_pred EEEEcCchh-HHHHHH-------------------------------------HHHHHHhcccCCcEEEEeCchhhHHHH
Q 011667 303 YKVYCPDEL-AKVMVI-------------------------------------RDRIFELGEKMGQTIIFVRTKNSASAL 344 (480)
Q Consensus 303 ~~~~~~~~~-~k~~~l-------------------------------------~~~l~~~~~~~~~~lVf~~s~~~~~~l 344 (480)
....+.... .....+ +..+.+ -...++||||.++..|+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~--h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR--HAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh--hccCceEEEEeccccchHH
Confidence 444332110 000000 000111 1357999999999999999
Q ss_pred HHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCccccc
Q 011667 345 HKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 421 (480)
Q Consensus 345 ~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~ 421 (480)
.++|.+. .+.|.++||+..+.+|...++.|+.+.+++|||||+++||+||.++.++||..+| .+...|+
T Consensus 522 er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlp--------d~k~nyv 593 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLP--------DDKTNYV 593 (725)
T ss_pred HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecC--------cccchhh
Confidence 9999876 4689999999999999999999999999999999999999999999999999999 7788899
Q ss_pred ccccccccCCCceeEEEEeeCC-------------------------------ccHHHHHHHHHHhCCcceecCCC
Q 011667 422 HRIGRAGRFGRKGVVFNLLMDG-------------------------------DDMIIMEKIERYFDIKVTEVRNS 466 (480)
Q Consensus 422 qr~GR~gR~g~~g~~~~l~~~~-------------------------------~~~~~~~~i~~~l~~~~~~~~~~ 466 (480)
|||||+||+.+-|.+|.++... .++..+..++..|++.|..+..+
T Consensus 594 hrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~ 669 (725)
T KOG0349|consen 594 HRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKT 669 (725)
T ss_pred hhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCC
Confidence 9999999999999988887621 14556777888888888776543
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.9e-40 Score=355.30 Aligned_cols=305 Identities=19% Similarity=0.248 Sum_probs=213.9
Q ss_pred EEccCCCccchHhHHHHhhccCCC----------CCCCeEEEEecCHHHHHHHHHHHHHHhc------------ccCcee
Q 011667 145 AQARNGSGKTTCFVLGMLSRVDPN----------LKAPQALCICPTRELAIQNLEVLRKMGK------------HTGITS 202 (480)
Q Consensus 145 v~a~TGsGKTl~~~l~il~~l~~~----------~~~~~~lil~Pt~~La~q~~~~~~~~~~------------~~~~~~ 202 (480)
|+||||||||++|.+|++..+... ..+.++|||+|+++|+.|+.+.++.... ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999887532 2357899999999999999998875211 235666
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEEEEEcCchhhhh--------------------
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEADHMLD-------------------- 261 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~-------------------- 261 (480)
...+|+...... .+.....++|+|+||++|..++.++ ...++++++|||||+|.|.+
T Consensus 81 ~vrtGDt~~~eR--~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQER--SKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHH--HHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 666666544321 1222235899999999999887653 34689999999999999864
Q ss_pred --hheeeeccccHHHHHHHHHHhcc--cceeeeccccccccccEEEEEEcCchh-------------------HHHHHHH
Q 011667 262 --EVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDEL-------------------AKVMVIR 318 (480)
Q Consensus 262 --~~~~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~k~~~l~ 318 (480)
|++++|||+++. ..+. .++.. +..+.. ........+. .++...+.. .....+.
T Consensus 159 ~~QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 159 SAQRIGLSATVRSA-SDVA-AFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCeEEEEEeeCCCH-HHHH-HHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHH
Confidence 489999999873 3333 44432 333322 1111111222 122211100 0001111
Q ss_pred HHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC---------------------------------CcEEEecCCCCHH
Q 011667 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFG---------------------------------YEVTTIMGATIQE 365 (480)
Q Consensus 319 ~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~---------------------------------~~~~~l~~~~~~~ 365 (480)
..+........++||||||+..|+.++..|++.. ..+..+||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 1233333356789999999999999999997531 1257899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 366 ERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 366 ~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
+|..+++.|++|++++||||+.+++|||++++++||+|+.| .+..+|+||+||+||. ..|.+..++...+.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP--------~sVas~LQRiGRAGR~-~gg~s~gli~p~~r 385 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATP--------LSVASGLQRIGRAGHQ-VGGVSKGLFFPRTR 385 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCC--------CCHHHHHHHhCCCCCC-CCCccEEEEEeCcH
Confidence 99999999999999999999999999999999999999999 8999999999999995 23333333333332
Q ss_pred HHHHH---HHHHHhCCcceecC
Q 011667 446 MIIME---KIERYFDIKVTEVR 464 (480)
Q Consensus 446 ~~~~~---~i~~~l~~~~~~~~ 464 (480)
...++ .++.++...++.+.
T Consensus 386 ~dlle~~~~ve~~l~g~iE~~~ 407 (1490)
T PRK09751 386 RDLVDSAVIVECMFAGRLENLT 407 (1490)
T ss_pred HHHHhhHHHHHHHhcCCCCccC
Confidence 22222 36777777777765
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-40 Score=308.51 Aligned_cols=306 Identities=22% Similarity=0.303 Sum_probs=224.9
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
+.-+++.+|......++. +|++++.|||.|||+++++-+..++.... + ++|+++||+.|+.|.++.+.++..-..
T Consensus 12 ~~ie~R~YQ~~i~a~al~---~NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALF---KNTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhh---cCeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 445689999998888887 58999999999999999999998888754 3 899999999999999999999876544
Q ss_pred ceeeEeecCCCCC-cccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------
Q 011667 200 ITSECAVPTDSTN-YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261 (480)
Q Consensus 200 ~~~~~~~~~~~~~-~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------------- 261 (480)
-.+..+.|....+ ....|. ..+|+|+||+.+.+-+..+.+++.++.++|+||||+-..
T Consensus 87 ~~i~~ltGev~p~~R~~~w~----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 87 DEIAALTGEVRPEEREELWA----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred hheeeecCCCChHHHHHHHh----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 4444454444333 222333 468999999999999999999999999999999999654
Q ss_pred -hheeeeccccHHHHH---HH---------------------------------------------HHHhc-------cc
Q 011667 262 -EVLLFSATFNETVKN---FV---------------------------------------------TRIVK-------DY 285 (480)
Q Consensus 262 -~~~~~SAT~~~~~~~---~~---------------------------------------------~~~~~-------~~ 285 (480)
.++++|||+..+... .+ ...+. +.
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 289999995322111 11 00000 00
Q ss_pred ceeeecc----c---------------------------------------------------------ccccccc----
Q 011667 286 NQLFVKK----E---------------------------------------------------------ELSLESV---- 300 (480)
Q Consensus 286 ~~~~~~~----~---------------------------------------------------------~~~~~~~---- 300 (480)
..+.... . .......
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 0000000 0 0000000
Q ss_pred --------------EEEEEEcCchhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhCCCcEE-Eec----
Q 011667 301 --------------KQYKVYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIM---- 359 (480)
Q Consensus 301 --------------~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~-~l~---- 359 (480)
......+.-...|+..+.+.+.+.. ....++|||++.+++|+.+..+|...+..+. .+-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000000011233333444444433 3456999999999999999999999887774 333
Q ss_pred ----CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcee
Q 011667 360 ----GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 435 (480)
Q Consensus 360 ----~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~ 435 (480)
.||+|.++..+++.|++|+++|||||+++++|||||.++.||+|++- .|+..++||.|||||. ++|.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpv--------pSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPV--------PSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCC--------cHHHHHHHhhCccccC-CCCe
Confidence 37999999999999999999999999999999999999999999999 8999999999999995 8999
Q ss_pred EEEEeeCC
Q 011667 436 VFNLLMDG 443 (480)
Q Consensus 436 ~~~l~~~~ 443 (480)
+++|++.+
T Consensus 474 v~vLvt~g 481 (542)
T COG1111 474 VVVLVTEG 481 (542)
T ss_pred EEEEEecC
Confidence 99999987
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.1e-40 Score=334.92 Aligned_cols=308 Identities=18% Similarity=0.186 Sum_probs=238.6
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
++....+|+ .|+++|..+++.++.| + |+.+.||+|||++|++|++.... .+..++|++||++||.|.++++.
T Consensus 69 ea~~R~~g~-~p~~vQl~~~~~l~~G--~--Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 69 EAAKRVLGM-RPYDVQLIGALVLHEG--N--IAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred HHHHHHhCC-CCchHHHHhHHHHcCC--c--eeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHH
Confidence 344444677 5999999999988887 4 99999999999999999985433 36689999999999999999999
Q ss_pred HHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh---
Q 011667 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE--- 262 (480)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~--- 262 (480)
.+...+|+.+.++.++...... .+....++|+|+||++| .+++..+ ...++.+.++|+||||.|+-.
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~---r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASE---KKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHH---HHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 9999999999988877652111 11223589999999999 5555432 134678999999999997630
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------heeeeccccHHH
Q 011667 263 --------------------------------------------------------------------VLLFSATFNETV 274 (480)
Q Consensus 263 --------------------------------------------------------------------~~~~SAT~~~~~ 274 (480)
+.+||.|....-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 667888876554
Q ss_pred HHHHHHHhcccceeeeccccccccccEE-EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC
Q 011667 275 KNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 353 (480)
..+...+-. ..+.++..... ..... ..+. .....|...+...+........++||||+|++.++.++..|...|+
T Consensus 378 ~e~~~~Y~l--~v~~IPt~kp~-~r~d~~~~i~-~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi 453 (790)
T PRK09200 378 KEFFEVYNM--EVVQIPTNRPI-IRIDYPDKVF-VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGI 453 (790)
T ss_pred HHHHHHhCC--cEEECCCCCCc-ccccCCCeEE-cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 444333322 22222222111 11111 1222 2445688888776666555788999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC---CCCC-----EEEEccCCCCCCCCCCCCccccccccc
Q 011667 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ---QQVN-----LIVNYDPPVKHGKHLEPDCEVYLHRIG 425 (480)
Q Consensus 354 ~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi---~~v~-----~Vi~~~~p~~~~~~~~~s~~~y~qr~G 425 (480)
++..+||.+.+.++..+...++.| .|+|||++++||+|| |+|. |||+|++| .+...|.||+|
T Consensus 454 ~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p--------~s~r~y~qr~G 523 (790)
T PRK09200 454 PHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERM--------ESRRVDLQLRG 523 (790)
T ss_pred CEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCC--------CCHHHHHHhhc
Confidence 999999999998888887777766 799999999999999 6998 99999999 89999999999
Q ss_pred ccccCCCceeEEEEeeCCcc
Q 011667 426 RAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 426 R~gR~g~~g~~~~l~~~~~~ 445 (480)
||||.|.+|.++.|++..|+
T Consensus 524 RtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 524 RSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cccCCCCCeeEEEEEcchHH
Confidence 99999999999999986543
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.9e-39 Score=356.07 Aligned_cols=346 Identities=19% Similarity=0.209 Sum_probs=255.0
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
.++.+.+.+.+|| .|+++|..++|.+++| +|++++||||||||++++++++.... ++.++|||+||++|+.|++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G--~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRG--KSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcC--CCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHH
Confidence 3445555555899 5999999999999999 99999999999999976666554422 3568999999999999999
Q ss_pred HHHHHHhcccC--ceeeEeecCCCCCccc-cc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh---
Q 011667 189 EVLRKMGKHTG--ITSECAVPTDSTNYVP-IS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--- 261 (480)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--- 261 (480)
+.+..++...+ +.+...+++.+...+. .. ......++|+|+||++|.+++... ...++++||+||||+|+.
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccccc
Confidence 99999887654 4444455544332211 11 122335899999999998876642 226789999999998853
Q ss_pred ----------------------------------------------------h-heeeeccccHHHHHHHHHHhccccee
Q 011667 262 ----------------------------------------------------E-VLLFSATFNETVKNFVTRIVKDYNQL 288 (480)
Q Consensus 262 ----------------------------------------------------~-~~~~SAT~~~~~~~~~~~~~~~~~~~ 288 (480)
+ .+++|||+++... ...++..+..+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f 295 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGF 295 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEE
Confidence 1 3568999985311 22344566666
Q ss_pred eeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhh---HHHHHHHHHhCCCcEEEecCCCCHH
Q 011667 289 FVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS---ASALHKALKDFGYEVTTIMGATIQE 365 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~ 365 (480)
.+........++.+.++...... + ..+..++... +.++||||++++. |+.++..|...|+++..+||+
T Consensus 296 ~v~~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 296 EVGSGRSALRNIVDVYLNPEKII-K-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EecCCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 66666666778888887664332 2 3444433332 3689999999876 589999999999999999995
Q ss_pred HHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEccCCCCCC------------------------------
Q 011667 366 ERDKIVKEFKDGLTQVLIST----DVLARGFDQQQ-VNLIVNYDPPVKHG------------------------------ 410 (480)
Q Consensus 366 ~r~~~~~~f~~g~~~iLv~T----~~~~~Gldi~~-v~~Vi~~~~p~~~~------------------------------ 410 (480)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|+...
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 8899999999999999999 58999999999 99999999998110
Q ss_pred --------------------------------------------CCCCCCccccccccccccc--CC--CceeEEEEeeC
Q 011667 411 --------------------------------------------KHLEPDCEVYLHRIGRAGR--FG--RKGVVFNLLMD 442 (480)
Q Consensus 411 --------------------------------------------~~~~~s~~~y~qr~GR~gR--~g--~~g~~~~l~~~ 442 (480)
..+..++.+|+|..|||-| +| .+|.+++|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~tyiqasgrtsrl~~gg~tkgls~~~~-- 523 (1638)
T PRK14701 446 PIEGVLDVFPEDVEFLRSILKDEEVIKKVAERPFVSLKKEEGKYYIEIPDVRTYIQASGRTSRLFAGGITKGASVLIV-- 523 (1638)
T ss_pred cchhHHHhHHHHHHHHHHHhccHHHHHHhhcccceEEEEeCCeEEEEecCcccceeccchhhhccCCCcCCceEEEEe--
Confidence 0123578899999999999 34 589999888
Q ss_pred CccHHHHHHHHHHhCC--cceecCCCHHHHHHHHHHc
Q 011667 443 GDDMIIMEKIERYFDI--KVTEVRNSDEDFKAALKAA 477 (480)
Q Consensus 443 ~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~~~ 477 (480)
|+...+..+.+.+.. .++-.+.+..+++.++++.
T Consensus 524 -d~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~i 559 (1638)
T PRK14701 524 -DDPEIFNALIRQMRFRFEFEFKSFEEVDLEELIKEI 559 (1638)
T ss_pred -cCHHHHHHHHHHHhhhcccceeeccccCHHHHHHHH
Confidence 456677888777764 3333334555667776653
No 63
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2e-39 Score=328.34 Aligned_cols=307 Identities=17% Similarity=0.181 Sum_probs=228.1
Q ss_pred hhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 117 ~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
..+|. .|+++|..+...+..| .++.++||+|||++|++|++..... +..++|++|+++||.|+++++..+..
T Consensus 65 R~lgl-rpydVQlig~l~l~~G----~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 65 RVLGM-FPYDVQVLGAIVLHQG----NIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred hhcCC-CccHHHHHHHHHhcCC----ceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 33565 4666666555554443 6999999999999999998765543 44699999999999999999999999
Q ss_pred ccCceeeEeecCCCC-CcccccCCCCCCCeEEEeChHHH-HHHHhc------CccccCceEEEEEcCchhhhhh------
Q 011667 197 HTGITSECAVPTDST-NYVPISKRPPVTAQVVIGTPGTI-KKWMSA------KKLGFSRLKILVYDEADHMLDE------ 262 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~------~~~~~~~~~~lViDEah~l~~~------ 262 (480)
.+|+.+.+.+++... .......+...+++|+|+||++| .+++.. ....++.+.++|+||||.|+-.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 999988877655221 12222223334699999999999 555532 2345778999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------------------------------------------heeeeccccHHHHHH
Q 011667 263 -----------------------------------------------------------------VLLFSATFNETVKNF 277 (480)
Q Consensus 263 -----------------------------------------------------------------~~~~SAT~~~~~~~~ 277 (480)
+.+||.|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 567788866555554
Q ss_pred HHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEE
Q 011667 278 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~ 357 (480)
..-+-. ..+.++...... .....-........|...+...+.+......++||||++++.++.++..|...|+++..
T Consensus 377 ~~iY~l--~v~~IPt~kp~~-r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~ 453 (762)
T TIGR03714 377 IETYSL--SVVKIPTNKPII-RIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNL 453 (762)
T ss_pred HHHhCC--CEEEcCCCCCee-eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE
Confidence 432222 222222221111 11111112223456788887777666667889999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---------CCCEEEEccCCCCCCCCCCCCcccccccccccc
Q 011667 358 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 428 (480)
Q Consensus 358 l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~g 428 (480)
+||.+.+.++..+...++.| .|+|||++++||+||+ ++.+|++|++| ....+ .||+||||
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~p--------s~rid-~qr~GRtG 522 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERME--------NSRVD-LQLRGRSG 522 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCC--------CcHHH-HHhhhccc
Confidence 99999999988887777666 6999999999999999 99999999999 44444 99999999
Q ss_pred cCCCceeEEEEeeCCcc
Q 011667 429 RFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 429 R~g~~g~~~~l~~~~~~ 445 (480)
|.|.+|.++.|++..|+
T Consensus 523 RqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 523 RQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCCceeEEEEEccchh
Confidence 99999999999986543
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.3e-39 Score=346.31 Aligned_cols=343 Identities=22% Similarity=0.271 Sum_probs=250.9
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
.++.+.+.+..| ..|+++|..++|.++.| ++++++||||||||+ |.+|++..+.. .++++|||+||++||.|++
T Consensus 65 ~~f~~~f~~~~g-~~p~~iQ~~~i~~il~G--~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 65 KEFEEFFKKAVG-SEPWSIQKMWAKRVLRG--DSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHhCC--CeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHH
Confidence 344445544344 46999999999999999 999999999999997 66676655543 3678999999999999999
Q ss_pred HHHHHHhcccCceeeE---eecCCCCCcc-ccc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-
Q 011667 189 EVLRKMGKHTGITSEC---AVPTDSTNYV-PIS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE- 262 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~- 262 (480)
+.+..++...++.... .+++.+.... ... .....+++|+|+||++|.+++.. +.. +++++|+||||+|++.
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 9999998877755432 3344332211 111 11223589999999999988765 112 7999999999998741
Q ss_pred -----------------------------------------------------heeeecc-ccHHHHHHHHHHhccccee
Q 011667 263 -----------------------------------------------------VLLFSAT-FNETVKNFVTRIVKDYNQL 288 (480)
Q Consensus 263 -----------------------------------------------------~~~~SAT-~~~~~~~~~~~~~~~~~~~ 288 (480)
+++|||| .|..+.. .++..+..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 2458999 5655432 234444455
Q ss_pred eeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCch---hhHHHHHHHHHhCCCcEEEecCCCCHH
Q 011667 289 FVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTK---NSASALHKALKDFGYEVTTIMGATIQE 365 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~---~~~~~l~~~L~~~~~~~~~l~~~~~~~ 365 (480)
.+........++.+.+...... ...+..++... ..++||||+++ +.|+.++..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~~---~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDEDL---KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEecccH---HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 5555555667788877755431 23344433332 36799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEccCCCCCCC-----------------------------
Q 011667 366 ERDKIVKEFKDGLTQVLIS----TDVLARGFDQQQ-VNLIVNYDPPVKHGK----------------------------- 411 (480)
Q Consensus 366 ~r~~~~~~f~~g~~~iLv~----T~~~~~Gldi~~-v~~Vi~~~~p~~~~~----------------------------- 411 (480)
.+++.|++|+++|||| ||+++||||+|+ |++|||||+|.....
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKVPLKEALSSPRRLLLLLSILQEERIESLSEK 442 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEEecccccccHHHHHHHHHhhhhhHHHHHHHH
Confidence 6899999999999999 599999999999 899999999964210
Q ss_pred ---------------------------------------------------------------------CCCCCcccccc
Q 011667 412 ---------------------------------------------------------------------HLEPDCEVYLH 422 (480)
Q Consensus 412 ---------------------------------------------------------------------~~~~s~~~y~q 422 (480)
.+..++.+|+|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~tyiq 522 (1171)
T TIGR01054 443 ARKLLGYLKRYIDLIERALEEVERHRGEVREIIEEVMKFLREQLKREDVVEKILESEDLVLVARGGIPYLVVPDARTYIQ 522 (1171)
T ss_pred hhHHHHHHHHHhhhhhhhhhhhccccchhHHHHHHHHHHHHHHhccHHHHHHhhcccceeEEeeCCeEEEEecCccceeE
Confidence 01256788999
Q ss_pred ccccccc--CC--CceeEEEEeeCCccHHHHHHHHHHhCCcceec---CCCHHHHHHHHHHc
Q 011667 423 RIGRAGR--FG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV---RNSDEDFKAALKAA 477 (480)
Q Consensus 423 r~GR~gR--~g--~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~~ 477 (480)
..|||-| +| .+|.+++|+ |+...+..+.+.+.. +.+. +.+..+++.++++.
T Consensus 523 asgrtsr~~~g~~t~gls~~~~---~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i 580 (1171)
T TIGR01054 523 ASGRTSRLYAGGLTKGLSIVLV---DDPEAFEALKKRLKW-TYEIEFKRIDEVDLEKLIREI 580 (1171)
T ss_pred ccChhhhcccCCcCCceEEEEe---cCHHHHHHHHHHHhc-ccccceeechhcCHHHHHHHH
Confidence 9999999 34 589999888 456688888888875 4333 24555566666653
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=6.3e-39 Score=322.67 Aligned_cols=307 Identities=16% Similarity=0.163 Sum_probs=242.6
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHh-hccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
++....+|+. |+++|..+.+.++.| + |+.++||+|||++|++|++ +.+. +.+++|++||++||.|.++++
T Consensus 47 Ea~~R~lg~~-p~~vQlig~~~l~~G--~--Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 47 EASKRVLGMR-PFDVQLIGGIALHKG--K--IAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred HHHHHHhCCC-ccchHHhhhhhhcCC--c--eeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHHHHHHH
Confidence 3444446766 999999999988877 3 9999999999999999995 5543 446999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh--
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE-- 262 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~-- 262 (480)
..+...+++.+.+++++...... .....++|+|+||++| ++++..+ .+.++.+.++|+||+|+|+-.
T Consensus 118 ~~l~~~LGLsv~~i~g~~~~~~r----~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 118 GQVYRFLGLSVGLILSGMSPEER----REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred HHHhccCCCeEEEEeCCCCHHHH----HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 99999999999988876553221 1222479999999999 8888765 346788999999999998640
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------------heeeeccccHH
Q 011667 263 ---------------------------------------------------------------------VLLFSATFNET 273 (480)
Q Consensus 263 ---------------------------------------------------------------------~~~~SAT~~~~ 273 (480)
+.+||.|....
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 56778887655
Q ss_pred HHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC
Q 011667 274 VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 353 (480)
...+..-+-.+...+......... ...-....+...|+..+.+.+.+....+.|+||||+++..++.++..|.+.|+
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~R~---d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi 430 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVIRK---DLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGI 430 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCeeee---eCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 544333333222222211111111 11111223455677777777766677889999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC-------CCEEEEccCCCCCCCCCCCCcccccccccc
Q 011667 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ-------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 426 (480)
Q Consensus 354 ~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~-------v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR 426 (480)
++..+|+. +.+|+..+..|..+...|+|||++++||+||+. ..|||+++.| .|...|.||+||
T Consensus 431 ~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p--------~s~ri~~q~~GR 500 (745)
T TIGR00963 431 PHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERH--------ESRRIDNQLRGR 500 (745)
T ss_pred CeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCC--------CcHHHHHHHhcc
Confidence 99999999 889999999999999999999999999999998 5699999999 899999999999
Q ss_pred cccCCCceeEEEEeeCCcc
Q 011667 427 AGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 427 ~gR~g~~g~~~~l~~~~~~ 445 (480)
|||.|.+|.+..|++..|+
T Consensus 501 tGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 501 SGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred ccCCCCCcceEEEEeccHH
Confidence 9999999999999987654
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.1e-38 Score=296.52 Aligned_cols=361 Identities=18% Similarity=0.253 Sum_probs=275.3
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhccc-ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
....+++.+++.+..-+.. .|++.+.|+|..++.. ++.| .|.++.++|+||||++.-++-+..+.. .+.+.|++
T Consensus 193 r~~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfL 267 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFL 267 (830)
T ss_pred cccccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEE
Confidence 4567899999999999876 8999999999999987 5677 999999999999999888887777654 36689999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcC
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 255 (480)
+|..+||+|-++.|+.-...+++.+..-+|........ ........+||+|+|++.+-.++..+ ..+.+++.|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999987788888776666655433221 33344456899999999999999886 5688999999999
Q ss_pred chhhhh---------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHH
Q 011667 256 ADHMLD---------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 314 (480)
Q Consensus 256 ah~l~~---------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 314 (480)
+|.+-+ |.+.+|||..+... +++.+-... +... ..+..+..+.+.+.++..|.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~l--V~y~---~RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKL--VLYD---ERPVPLERHLVFARNESEKW 420 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCee--Eeec---CCCCChhHeeeeecCchHHH
Confidence 998865 58999999876543 233332221 2222 23345566677777777887
Q ss_pred HHHHHHHHHh------cccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 315 MVIRDRIFEL------GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 315 ~~l~~~l~~~------~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
..+..+.... ....+++|||++|+..|+.++..|...|+++.++|++|+..+|..+...|.++++.++|+|-++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 7766644322 1246799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE---ccCCCCCCCCCCCCcccccccccccccCC--CceeEEEEeeCCccHHH-----HHH-HHHHhC
Q 011667 389 ARGFDQQQVNLIVN---YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMII-----MEK-IERYFD 457 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~---~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~~~~~~-----~~~-i~~~l~ 457 (480)
+.|+|+|.-.+|+. ++.-| -|+.+|.||.|||||.+ ..|++++++-+....+- -+. --+.|+
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~W-------Ls~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~ 573 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEW-------LSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLE 573 (830)
T ss_pred hcCCCCchHHHHHHHHHccccc-------CCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhc
Confidence 99999997666543 44444 67999999999999977 47999988865432110 011 134445
Q ss_pred CcceecC---CCHHHHHHHHHHcC
Q 011667 458 IKVTEVR---NSDEDFKAALKAAG 478 (480)
Q Consensus 458 ~~~~~~~---~~~~~~~~~~~~~~ 478 (480)
..++.+. ++.++.+..|..+|
T Consensus 574 s~~e~V~vey~ee~e~e~vLA~~~ 597 (830)
T COG1202 574 SEPEPVIVEYDEEDEEENVLASAG 597 (830)
T ss_pred CCCCcceeccCcHHHHHHHHHHhh
Confidence 5554443 45555555555443
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.3e-38 Score=319.39 Aligned_cols=288 Identities=15% Similarity=0.143 Sum_probs=204.9
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (480)
..|+++|.++++.++.+ ++.++++|||+|||+++...+...+.. ...++||||||++|+.||.+.+.+++......
T Consensus 113 ~~~r~~Q~~av~~~l~~--~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKN--NRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 47999999999999988 889999999999999765432222222 23489999999999999999999987543333
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------------hheeee
Q 011667 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------EVLLFS 267 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------~~~~~S 267 (480)
+..+.++.... ...+|+|+||+++.+... ..+.++++||+||||++.. ++++||
T Consensus 189 ~~~i~~g~~~~---------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 189 MHKIYSGTAKD---------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLT 256 (501)
T ss_pred eeEEecCcccC---------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEe
Confidence 33333333211 236899999999976432 2467899999999999764 279999
Q ss_pred ccccHHHHHH--HHHHhcccceeeeccccc------cccccEEEEEE--------------------cCchhHHHHHHHH
Q 011667 268 ATFNETVKNF--VTRIVKDYNQLFVKKEEL------SLESVKQYKVY--------------------CPDELAKVMVIRD 319 (480)
Q Consensus 268 AT~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------------~~~~~~k~~~l~~ 319 (480)
||+....... ....+.. ....+..... ....+...... ......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9987432211 1112221 1111000000 00000000000 0011122333333
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCC
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-DVLARGFDQQQVN 398 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~Gldi~~v~ 398 (480)
.+......+.++||||++.++++.+++.|...+.++..+||++++.+|..+++.|++|...||||| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 333344456789999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCce
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g 434 (480)
+||++.++ .|...|+||+||++|.+..+
T Consensus 416 ~vIl~~p~--------~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHPS--------KSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecCC--------cchhhhhhhhhccccCCCCC
Confidence 99999888 78889999999999987544
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.3e-38 Score=308.13 Aligned_cols=285 Identities=20% Similarity=0.273 Sum_probs=195.8
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCC-------C--
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST-------N-- 212 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 212 (480)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+...++.... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 58999999999999999999987654 34568999999999999999999987432 11111111100 0
Q ss_pred -cccc------cCCCCCCCeEEEeChHHHHHHHhcCc----cccC--ceEEEEEcCchhhhh------------------
Q 011667 213 -YVPI------SKRPPVTAQVVIGTPGTIKKWMSAKK----LGFS--RLKILVYDEADHMLD------------------ 261 (480)
Q Consensus 213 -~~~~------~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~--~~~~lViDEah~l~~------------------ 261 (480)
.... ........+|+|+||+.++..+..+. ..+. ..++||+||||.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 0000 00011236799999999988776521 1111 237899999999865
Q ss_pred hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEE-cCchhHHHHHHHHHHHHhcccCCcEEEEeCchhh
Q 011667 262 EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS 340 (480)
Q Consensus 262 ~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~ 340 (480)
++++||||+++.+..++......+........... ....+.+.. ......+...+.. +.......+++||||++++.
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLER-LLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHH-HHHHhhCCCeEEEEECCHHH
Confidence 37999999997776665554332111111111000 011122211 1111223333433 23333356899999999999
Q ss_pred HHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCC
Q 011667 341 ASALHKALKDFGY--EVTTIMGATIQEERDK----IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 414 (480)
Q Consensus 341 ~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~----~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~ 414 (480)
++.++..|.+.+. .+..+||++++.+|.+ +++.|++|+..|||||+++++|+|++ +++||++..|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-------- 305 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-------- 305 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--------
Confidence 9999999987765 5999999999999976 48899999999999999999999995 8999998777
Q ss_pred CCcccccccccccccCCCc----eeEEEEeeCC
Q 011667 415 PDCEVYLHRIGRAGRFGRK----GVVFNLLMDG 443 (480)
Q Consensus 415 ~s~~~y~qr~GR~gR~g~~----g~~~~l~~~~ 443 (480)
+.+|+||+||+||.|+. |.+++|....
T Consensus 306 --~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 --IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred --HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 67899999999998854 3566666543
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3e-36 Score=310.99 Aligned_cols=325 Identities=21% Similarity=0.200 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
.+.+.+.+-+.. .++.+..+-|+.++...+-+ ++|+++++|||||||+.+++.+++.+... +.++++|||+++||.
T Consensus 15 ~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~ 90 (766)
T COG1204 15 KLDDRVLEILKG-DGIDELFNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAE 90 (766)
T ss_pred cccHHHHHHhcc-CChHHhhHHHHHHhhccccC-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHH
Confidence 366666766654 78878888888888776665 49999999999999999999999998764 568999999999999
Q ss_pred HHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----
Q 011667 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---- 261 (480)
Q Consensus 186 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~---- 261 (480)
+.++.+. ....+|+++...+|....... ...+++|+|+||+++..++.+....+..+++||+||+|.+.+
T Consensus 91 Ek~~~~~-~~~~~GirV~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 91 EKYEEFS-RLEELGIRVGISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHhh-hHHhcCCEEEEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 9999999 445678888877766543321 122589999999999999988776788999999999999876
Q ss_pred -----------------hheeeeccccHHHHHHHHHHhccc-c-eeeeccccccccccEEEEEEcCchh-----HHHHHH
Q 011667 262 -----------------EVLLFSATFNETVKNFVTRIVKDY-N-QLFVKKEELSLESVKQYKVYCPDEL-----AKVMVI 317 (480)
Q Consensus 262 -----------------~~~~~SAT~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~k~~~l 317 (480)
+++++|||+|+... +..++.-. . ..+....-.......+.+....... ......
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~e--vA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEE--VADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHH--HHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 38999999996443 22233211 1 1111111112222223333322111 233444
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-------------------------------------CCcEEEecC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-------------------------------------GYEVTTIMG 360 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~~ 360 (480)
...+......++++||||+|++.+...++.|... ...+..+|+
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 4556667778899999999999999999888730 123678999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----ccCCCCCCCCCCCCcccccccccccccCC--Cce
Q 011667 361 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKG 434 (480)
Q Consensus 361 ~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g 434 (480)
+++.++|..+.+.|+.|.++||+||..++.|+|+|.-++||- |++ ..+ ....+.-+|+|++|||||.| ..|
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~-~~g--~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDP-KGG--IVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcC-CCC--eEECchhhHhhccCcCCCCCcCCCC
Confidence 999999999999999999999999999999999998777773 553 222 23367889999999999988 456
Q ss_pred eEEEEeeCCcc
Q 011667 435 VVFNLLMDGDD 445 (480)
Q Consensus 435 ~~~~l~~~~~~ 445 (480)
.++++....++
T Consensus 400 ~~~i~~~~~~~ 410 (766)
T COG1204 400 EAIILATSHDE 410 (766)
T ss_pred cEEEEecCccc
Confidence 77766644443
No 70
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-36 Score=277.57 Aligned_cols=310 Identities=18% Similarity=0.216 Sum_probs=226.3
Q ss_pred HHHHHHHhhcCCCCC-hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 110 ELLKGLYVEMKFQKP-SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 110 ~l~~~l~~~~~~~~p-~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
.+..+|++-||+.++ ++.|.+|+..+..+. +||.|++|||+||++||.+|.|-+ +...||+.|..+|+..+.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k-~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRK-CDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhcc-CcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHH
Confidence 455677777888764 899999999999884 899999999999999999999855 448899999999999998
Q ss_pred HHHHHHhcccCceeeEeecCCCCCcc----cccCCCCCCCeEEEeChHHH-----HHHHhcCccccCceEEEEEcCchhh
Q 011667 189 EVLRKMGKHTGITSECAVPTDSTNYV----PISKRPPVTAQVVIGTPGTI-----KKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~I~v~Tp~~l-----~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
+.+.++-. .+..+....+.... ...........+++.||+.- ..+|+. -..-..+.++|+||||++
T Consensus 79 DHL~~LKV----p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 79 DHLKRLKV----PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHhcCC----chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhhhH
Confidence 88887632 11111111111100 01112223467999999863 333332 122345889999999999
Q ss_pred hhh----------------------heeeeccccHHHHHHHHHH--hcccceeeeccccccccccEEEEEEcC---chhH
Q 011667 260 LDE----------------------VLLFSATFNETVKNFVTRI--VKDYNQLFVKKEELSLESVKQYKVYCP---DELA 312 (480)
Q Consensus 260 ~~~----------------------~~~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 312 (480)
..| .+.++||.+..+++.+... +.+|..++..+.- ..+ .++... .-..
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~N---LFYD~~~K~~I~D 228 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDN---LFYDNHMKSFITD 228 (641)
T ss_pred hhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhh---hhHHHHHHHHhhh
Confidence 875 6889999999888766544 4455544432211 001 111000 0001
Q ss_pred HHHHHHHHHHHhcc-----------cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 313 KVMVIRDRIFELGE-----------KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 313 k~~~l~~~l~~~~~-----------~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
-+..|.+.-...+. ..+-.||||.++++|+.++-.|...|+++..+|.++...+|..+.+.|.++++.|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 11112221111110 1245699999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 382 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
++||..+++|+|-|+|++|||+++| .++..|.|-.||+||.|....|-++|+..|
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~--------qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPS--------QNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred EEEEeccccccCCcceeEEEecCch--------hhhHHHHHhccccccCCCccceeeeecccc
Confidence 9999999999999999999999999 899999999999999999999998887654
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=294.61 Aligned_cols=304 Identities=23% Similarity=0.268 Sum_probs=213.6
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
..-.++.+|.+.+..+| | +|+|+++|||+|||+++...+++++.+..+ .++++++|++-|+.|+...+..++....
T Consensus 59 ~~~~lR~YQ~eivq~AL-g--kNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-G--KNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-c--CCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 44568999999999999 8 999999999999999999999999988765 5999999999999998877777665422
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhhhh-----------------
Q 011667 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD----------------- 261 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~----------------- 261 (480)
+....++..... -........+|+|+||+.|...|..... .++.+.++||||||+-..
T Consensus 135 --~T~~l~~~~~~~--~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 135 --VTGQLGDTVPRS--NRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ceeeccCccCCC--chhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 222333321111 1112233478999999999998887543 368999999999998432
Q ss_pred --hheeeeccccHHHHHHHHHHhcccc---------------------eeee----------------------------
Q 011667 262 --EVLLFSATFNETVKNFVTRIVKDYN---------------------QLFV---------------------------- 290 (480)
Q Consensus 262 --~~~~~SAT~~~~~~~~~~~~~~~~~---------------------~~~~---------------------------- 290 (480)
|++++|||+.............-.. .+.+
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 6899999975332221110000000 0000
Q ss_pred ----------------ccccccccccE---------------------EEEEE---------------------------
Q 011667 291 ----------------KKEELSLESVK---------------------QYKVY--------------------------- 306 (480)
Q Consensus 291 ----------------~~~~~~~~~~~---------------------~~~~~--------------------------- 306 (480)
........+.. ...+.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 00000000000 00000
Q ss_pred -------------------cCchhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHh---CCCcEEEecC--
Q 011667 307 -------------------CPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMG-- 360 (480)
Q Consensus 307 -------------------~~~~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~-- 360 (480)
.+....|+..+.+.+.+.. .+..++||||.++..|..|..+|.. .+++...+-|
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 0001223333333332222 2456999999999999999999973 2445444444
Q ss_pred ------CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCce
Q 011667 361 ------ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 434 (480)
Q Consensus 361 ------~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g 434 (480)
+|++.++..+++.|++|.++|||||.++++||||+.|+.||.||.- .++...+||.|| ||+ +.|
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~--------snpIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYS--------SNPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCC--------ccHHHHHHHhcc-ccc-cCC
Confidence 8999999999999999999999999999999999999999999999 889999999999 997 689
Q ss_pred eEEEEee
Q 011667 435 VVFNLLM 441 (480)
Q Consensus 435 ~~~~l~~ 441 (480)
.|+.+++
T Consensus 521 ~~vll~t 527 (746)
T KOG0354|consen 521 KCVLLTT 527 (746)
T ss_pred eEEEEEc
Confidence 9998888
No 72
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.6e-35 Score=309.69 Aligned_cols=279 Identities=19% Similarity=0.237 Sum_probs=193.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC----HHHHHHHHHHHHH-HhcccCceeeEeecCCCCCccc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT----RELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVP 215 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt----~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 215 (480)
+.++++|+||||||+ .+|.+...........+++.-|. ++||.++++++.. ++...|+. +...
T Consensus 90 ~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~----vrf~------ 157 (1294)
T PRK11131 90 QVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK----VRFN------ 157 (1294)
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee----ecCc------
Confidence 788999999999999 57744332222222234444585 4677777766654 33333322 1111
Q ss_pred ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh-hhh------------------hheeeeccccHHHHH
Q 011667 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLD------------------EVLLFSATFNETVKN 276 (480)
Q Consensus 216 ~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~------------------~~~~~SAT~~~~~~~ 276 (480)
......++|+|+|||+|++++..+. .++++++|||||||. +++ ++++||||++.. .
T Consensus 158 --~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e--~ 232 (1294)
T PRK11131 158 --DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPE--R 232 (1294)
T ss_pred --cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHH--H
Confidence 1112358999999999999998754 489999999999994 433 489999999753 3
Q ss_pred HHHHHhcccceeeeccccccccccEEEEEEcCch-----hHHHHHHHHHHHHh-cccCCcEEEEeCchhhHHHHHHHHHh
Q 011667 277 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE-----LAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKD 350 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~~l~~~-~~~~~~~lVf~~s~~~~~~l~~~L~~ 350 (480)
+. .++.+...+.+.... ..+...+...... ...+..+...+... ....+.+||||++..+++.+++.|..
T Consensus 233 fs-~~F~~apvI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 233 FS-RHFNNAPIIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HH-HHcCCCCEEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 33 344433345444332 2345555544321 12233333322222 23568899999999999999999988
Q ss_pred CCCc---EEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCC-------CCCCC---CCc
Q 011667 351 FGYE---VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH-------GKHLE---PDC 417 (480)
Q Consensus 351 ~~~~---~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~-------~~~~~---~s~ 417 (480)
.++. +..+||+|++.+|..+++. .|..+|||||+++++|||||+|++||+++..+.. ...++ .|.
T Consensus 309 ~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSk 386 (1294)
T PRK11131 309 LNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQ 386 (1294)
T ss_pred cCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCH
Confidence 7654 7899999999999999986 5788999999999999999999999998753222 11222 355
Q ss_pred ccccccccccccCCCceeEEEEeeCC
Q 011667 418 EVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 418 ~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
.+|.||+||+||. ++|.||.||++.
T Consensus 387 asa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 387 ASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred hhHhhhccccCCC-CCcEEEEeCCHH
Confidence 7899999999998 699999999854
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.2e-35 Score=282.37 Aligned_cols=279 Identities=14% Similarity=0.203 Sum_probs=192.0
Q ss_pred HHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc----Ccee
Q 011667 127 IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT----GITS 202 (480)
Q Consensus 127 ~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~----~~~~ 202 (480)
+|.++++.+.+++..+++++||||||||.+|++|++.. ..++++++|+++|+.|+++.+..+.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999999843458999999999999999999852 3468999999999999999999886432 3333
Q ss_pred eEeecCCCCCccccc------------------CCCCCCCeEEEeChHHHHHHHhcC----c----cccCceEEEEEcCc
Q 011667 203 ECAVPTDSTNYVPIS------------------KRPPVTAQVVIGTPGTIKKWMSAK----K----LGFSRLKILVYDEA 256 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~------------------~~~~~~~~I~v~Tp~~l~~~l~~~----~----~~~~~~~~lViDEa 256 (480)
....+....+..... ......+.|+++||+.|..++... . ..+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 333332111100000 001235789999999997665431 1 12578999999999
Q ss_pred hhhhh-----------------------hheeeeccccHHHHHHHHHH--hcccceeeecc--------------c----
Q 011667 257 DHMLD-----------------------EVLLFSATFNETVKNFVTRI--VKDYNQLFVKK--------------E---- 293 (480)
Q Consensus 257 h~l~~-----------------------~~~~~SAT~~~~~~~~~~~~--~~~~~~~~~~~--------------~---- 293 (480)
|.+.. +++++|||+++.+...+... +..+....... .
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 98653 38899999998877766654 33322111111 0
Q ss_pred cccccccEEEEEEcCc-hhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhCC--CcEEEecCCCCHHHHH
Q 011667 294 ELSLESVKQYKVYCPD-ELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFG--YEVTTIMGATIQEERD 368 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~--~~~~~l~~~~~~~~r~ 368 (480)
......+.+.+..... ....+..+.+.+.+.. ...+++||||+++..++.++..|...+ +.+..+||.+++.+|.
T Consensus 235 ~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~ 314 (357)
T TIGR03158 235 RPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE 314 (357)
T ss_pred ceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHH
Confidence 0011244444443221 1111222333233222 245789999999999999999998764 5788999999999987
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccc
Q 011667 369 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 428 (480)
Q Consensus 369 ~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~g 428 (480)
+. ++..|||||++++||||++.+ +|| ++ | .+...|+||+||+|
T Consensus 315 ~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p--------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 315 RA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-A--------RDAAAFWQRLGRLG 357 (357)
T ss_pred Hh------ccCCEEEEecHHhcccCCCCc-eEE-EC-C--------CCHHHHhhhcccCC
Confidence 54 478999999999999999987 666 44 7 67999999999997
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-35 Score=306.16 Aligned_cols=314 Identities=19% Similarity=0.228 Sum_probs=241.4
Q ss_pred CHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 108 SPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 108 ~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
++++...+...+|...++|-|.++|..++.| +|+++.+|||.||++||.+|++-. ++..|||.|..+|++.+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~G--kd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSG--KDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcC--CceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHH
Confidence 3456667777799999999999999999999 999999999999999999999843 45899999999999886
Q ss_pred HHHHHHHhcccCceeeEeecCCCCCc----ccccCCCCCCCeEEEeChHHHHHHHhc--CccccCc---eEEEEEcCchh
Q 011667 188 LEVLRKMGKHTGITSECAVPTDSTNY----VPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSR---LKILVYDEADH 258 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~---~~~lViDEah~ 258 (480)
...+.. .++...++.++..... ...........+|++.||+.+...-.- ....+.. +.++|+||||+
T Consensus 321 v~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 666533 3555555554443321 111112223579999999987532211 1112333 88999999999
Q ss_pred hhhh----------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHH
Q 011667 259 MLDE----------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 316 (480)
Q Consensus 259 l~~~----------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (480)
+..| ++.++||.+..+...+-..+.-...... .......++...+..-... .....
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~sfnR~NL~yeV~~k~~~-~~~~~ 474 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF-KSSFNRPNLKYEVSPKTDK-DALLD 474 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee-cccCCCCCceEEEEeccCc-cchHH
Confidence 9875 8899999999888877776654443322 2233333444333332221 22222
Q ss_pred HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 011667 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 317 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
+.. ..........+||||.++.+|+.++..|...++.+..||++|+..+|..+...|..++++|+|||=++++|||.|+
T Consensus 475 ~~~-~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 475 ILE-ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHH-HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 222 2233347789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
|+.||||++| +|.+.|.|-+|||||.|....|++|+...|
T Consensus 554 VR~ViH~~lP--------ks~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 554 VRFVIHYSLP--------KSFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred eeEEEECCCc--------hhHHHHHHhccccCcCCCcceeEEecchhH
Confidence 9999999999 899999999999999999999999998664
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.2e-35 Score=310.51 Aligned_cols=308 Identities=23% Similarity=0.310 Sum_probs=222.6
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
+.-+|+++|..++..++.+ ++++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~---n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK---NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC---CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4457999999999888874 8999999999999999998888773 2456899999999999999999998765433
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-----------------
Q 011667 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE----------------- 262 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~----------------- 262 (480)
..+....+...... ........+|+|+||+.+...+..+.+.+.++++|||||||++...
T Consensus 87 ~~v~~~~g~~~~~~---r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 87 EKIVVFTGEVSPEK---RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred ceEEEEeCCCCHHH---HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 34444444433221 1111224689999999998888777788899999999999987542
Q ss_pred -heeeeccccHH---HHHHHHHHhcc------------------cceeeecc--------------------------cc
Q 011667 263 -VLLFSATFNET---VKNFVTRIVKD------------------YNQLFVKK--------------------------EE 294 (480)
Q Consensus 263 -~~~~SAT~~~~---~~~~~~~~~~~------------------~~~~~~~~--------------------------~~ 294 (480)
+++||||+... +...+...... +...++.. ..
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78999997322 11111111000 00000000 00
Q ss_pred cc--cc-------------ccEEEE-------------------------------------------------------
Q 011667 295 LS--LE-------------SVKQYK------------------------------------------------------- 304 (480)
Q Consensus 295 ~~--~~-------------~~~~~~------------------------------------------------------- 304 (480)
.. .. .+....
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 000000
Q ss_pred ----------------EEcCchhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCC-----
Q 011667 305 ----------------VYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA----- 361 (480)
Q Consensus 305 ----------------~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~----- 361 (480)
..+.....|+..+.+.+.+.. ....++||||+++..+..+++.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 000111233444444443332 366899999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEE
Q 011667 362 ---TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438 (480)
Q Consensus 362 ---~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~ 438 (480)
|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+| .++..|+||+||+||.| .|.++.
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~--------~s~~r~iQR~GR~gR~~-~~~v~~ 474 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPV--------PSEIRSIQRKGRTGRQE-EGRVVV 474 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccCcCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 67888999999999976 588998
Q ss_pred EeeCCc
Q 011667 439 LLMDGD 444 (480)
Q Consensus 439 l~~~~~ 444 (480)
|+..+.
T Consensus 475 l~~~~t 480 (773)
T PRK13766 475 LIAKGT 480 (773)
T ss_pred EEeCCC
Confidence 887654
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-34 Score=292.65 Aligned_cols=308 Identities=17% Similarity=0.148 Sum_probs=206.5
Q ss_pred CChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce
Q 011667 123 KPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (480)
.++|+|.+++..++.. ..+..++++|||+|||++.+..+. .+ ..++|||||+..|+.||.+.+.+|.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 5899999999988843 225789999999999998665443 33 2469999999999999999999986433333
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC--------ccccCceEEEEEcCchhhhh------------
Q 011667 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--------KLGFSRLKILVYDEADHMLD------------ 261 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~l~~------------ 261 (480)
+....++.... ......|+|+|+..+.....+. .+.-..+++||+||||++..
T Consensus 329 I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a 401 (732)
T TIGR00603 329 ICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQA 401 (732)
T ss_pred EEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCc
Confidence 33333322111 1113679999999875432211 12234688999999998754
Q ss_pred -hheeeeccccHHHH--HHHHHHhcccceeeeccccc----cccccEEEEEEcCc----------------------hhH
Q 011667 262 -EVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEEL----SLESVKQYKVYCPD----------------------ELA 312 (480)
Q Consensus 262 -~~~~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------------------~~~ 312 (480)
..+++|||+...-. ..+..++ .|........+. -+.......+.++. ...
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 27999999853211 1121122 122211111100 00111111112211 112
Q ss_pred HHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC-CCcEEEEccccccC
Q 011667 313 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG-LTQVLISTDVLARG 391 (480)
Q Consensus 313 k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~iLv~T~~~~~G 391 (480)
|+..+..++........++||||.+...+..++..|. +..+||.+++.+|..+++.|+.| .+++||+|+++.+|
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 3333333232222366799999999999999988872 46799999999999999999865 78999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeE-------EEEeeCCc-cHHHHHHHHHHh
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV-------FNLLMDGD-DMIIMEKIERYF 456 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~-------~~l~~~~~-~~~~~~~i~~~l 456 (480)
+|+|++++||+++.|. .|..+|+||+||++|.+..|.+ |.|++... ++.+..+=.+||
T Consensus 556 IDlP~a~vvI~~s~~~-------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 556 IDLPEANVLIQISSHY-------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred cCCCCCCEEEEeCCCC-------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 9999999999999883 5899999999999999876665 88888654 344434444444
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=296.83 Aligned_cols=333 Identities=23% Similarity=0.278 Sum_probs=245.9
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
..+..++.+ .|+..++++|.+|+..+.+| +|++|+.+||||||.+|++||++++.....+ ++|+|.||++||+.+.
T Consensus 57 ~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G--~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~ 132 (851)
T COG1205 57 ESLKSALVK-AGIERLYSHQVDALRLIREG--RNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQA 132 (851)
T ss_pred hHHHHHHHH-hccccccHHHHHHHHHHHCC--CCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHH
Confidence 334666765 78888999999999999999 9999999999999999999999999876655 8999999999999999
Q ss_pred HHHHHHhcccC--ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc----cccCceEEEEEcCchhhhh-
Q 011667 189 EVLRKMGKHTG--ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK----LGFSRLKILVYDEADHMLD- 261 (480)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~~~~~lViDEah~l~~- 261 (480)
+.++++....+ +.+....|...... ........++|+++||.+|..++.... ..++++++||+||+|..-.
T Consensus 133 ~rl~~~~~~~~~~v~~~~y~Gdt~~~~--r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 133 ERLRELISDLPGKVTFGRYTGDTPPEE--RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHhCCCcceeeeecCCCChHH--HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 99999988887 44433333332222 212234468999999999988665432 3467899999999997432
Q ss_pred -----------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc-----h---
Q 011667 262 -----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD-----E--- 310 (480)
Q Consensus 262 -----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--- 310 (480)
|+++.|||+.+.-.. +..++.......+. ..........+....+. .
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~-~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF-AEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH-HHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcc
Confidence 489999998865543 44444433333222 22333344444444440 0
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH----KALKDFG----YEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~----~~L~~~~----~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
......+...+.......-++|+|+.++..++.++ ..+...+ ..+..+++++...+|.++...|++|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 01122222222333346679999999999999997 4444445 678999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCCCCCCCCCC-CcccccccccccccCCCceeEEEEeeCC-ccHHHHHHHHHHhC
Q 011667 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP-DCEVYLHRIGRAGRFGRKGVVFNLLMDG-DDMIIMEKIERYFD 457 (480)
Q Consensus 383 v~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~-s~~~y~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~~i~~~l~ 457 (480)
++|+++.-|+|+.+++.||.++.| . +..++.||.||+||.++.+..+..+... -+..++..-+.++.
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P--------~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYP--------GVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCC--------CchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 6 7899999999999998766666555422 13444444455554
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=259.06 Aligned_cols=319 Identities=20% Similarity=0.221 Sum_probs=245.6
Q ss_pred ccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 103 EDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 103 ~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
++++++.+..+.|...+...+++|.|..+|+..+.| .++++..|||.||++||.+|+|.. ...+||+||..+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~--ed~~lil~tgggkslcyqlpal~a------dg~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAG--EDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhcc--CceEEEEeCCCccchhhhhhHHhc------CCceEeechhHH
Confidence 467888999999988889999999999999999999 999999999999999999999965 557999999999
Q ss_pred HHHHHHHHHHHHhcccCceeeEeecCCCCCc----ccccCCCCCCCeEEEeChHHHHHH---Hhc--CccccCceEEEEE
Q 011667 183 LAIQNLEVLRKMGKHTGITSECAVPTDSTNY----VPISKRPPVTAQVVIGTPGTIKKW---MSA--KKLGFSRLKILVY 253 (480)
Q Consensus 183 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~---l~~--~~~~~~~~~~lVi 253 (480)
|+..+.-+++.++.. ...+....+... ............+++.||+.+... ++. ..+....+.+|-+
T Consensus 146 lmedqil~lkqlgi~----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 146 LMEDQILQLKQLGID----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHHHhCcc----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 999988888887532 222222221110 001112223467999999987432 221 2445667899999
Q ss_pred cCchhhhhh----------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc-h
Q 011667 254 DEADHMLDE----------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD-E 310 (480)
Q Consensus 254 DEah~l~~~----------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 310 (480)
||+|+...+ +++++||.+..+...+..++--... +..+.....+++...+...+. +
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~-~tf~a~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA-FTFRAGFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-heeecccCCCCceeEeeeCCCCh
Confidence 999997764 8899999998877766665532222 222233344445444444443 3
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..-.+.+..++.... .+...||||-+++.++.++..|...|+++..+|..|.+.++.-+-+.|..|++.|+|+|-.+++
T Consensus 301 dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred HHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 333444444332222 5667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccc-------------------------------------------ccccc
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH-------------------------------------------RIGRA 427 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~q-------------------------------------------r~GR~ 427 (480)
|||-|+|++|||..+| .|++.|.| ..||+
T Consensus 380 gidkpdvrfvihhsl~--------ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLP--------KSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred cCCCCCeeEEEecccc--------hhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 9999999999999999 89999999 67999
Q ss_pred ccCCCceeEEEEeeCC
Q 011667 428 GRFGRKGVVFNLLMDG 443 (480)
Q Consensus 428 gR~g~~g~~~~l~~~~ 443 (480)
||.+.+..||++|--.
T Consensus 452 grd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFA 467 (695)
T ss_pred ccCCCcccEEEEechH
Confidence 9999999999888543
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.7e-33 Score=296.09 Aligned_cols=283 Identities=18% Similarity=0.203 Sum_probs=196.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH-hcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM-GKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+.++++|+||||||. .+|.+..-.......++++.-|.|-.|..++..+.+. +...|..+.+.+...+ .
T Consensus 83 ~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~--------~ 152 (1283)
T TIGR01967 83 QVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD--------Q 152 (1283)
T ss_pred ceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc--------c
Confidence 789999999999999 4565443222222335566669998888877766653 3333333333222221 1
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh-hhh------------------hheeeeccccHHHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLD------------------EVLLFSATFNETVKNFVTR 280 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~------------------~~~~~SAT~~~~~~~~~~~ 280 (480)
....+.|.|+|+|.|++.+..+. .++++++|||||||. +++ ++++||||+... . +..
T Consensus 153 ~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~--~-fa~ 228 (1283)
T TIGR01967 153 VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPE--R-FSR 228 (1283)
T ss_pred cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHH--H-HHH
Confidence 12357899999999999988754 489999999999994 332 389999999742 3 334
Q ss_pred HhcccceeeeccccccccccEEEEEEcCc-----hhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHhCC--
Q 011667 281 IVKDYNQLFVKKEELSLESVKQYKVYCPD-----ELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFG-- 352 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~-- 352 (480)
++.+...+.+..... .+...|..... .......+...+.... ...+.+|||+++..+++.+++.|...+
T Consensus 229 ~F~~apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~ 305 (1283)
T TIGR01967 229 HFNNAPIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLR 305 (1283)
T ss_pred HhcCCCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 444434444443332 23334433221 1122333333333222 245899999999999999999998764
Q ss_pred -CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCC-------C---CCCccccc
Q 011667 353 -YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH-------L---EPDCEVYL 421 (480)
Q Consensus 353 -~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~-------~---~~s~~~y~ 421 (480)
+.+..+||+|++.+|.++++.+ +..+|||||+++++|||||+|++||+++.++...++ + +.|.++|.
T Consensus 306 ~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~ 383 (1283)
T TIGR01967 306 HTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASAN 383 (1283)
T ss_pred CcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHH
Confidence 5689999999999999997654 346899999999999999999999999977543321 1 23567999
Q ss_pred ccccccccCCCceeEEEEeeCC
Q 011667 422 HRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 422 qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
||+||+||.| +|.||.||++.
T Consensus 384 QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 384 QRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred HHhhhhCCCC-CceEEEecCHH
Confidence 9999999997 99999999854
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=282.57 Aligned_cols=315 Identities=22% Similarity=0.277 Sum_probs=237.6
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-------CCCCCeEEEEecCHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-------NLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-------~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
++|..+..+|..++|.+...+ .|+|||||||||||..|++.||..+.. ...+.++++|+|+++||..+++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~Sn-eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSN-ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCC-CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 689999999999999999874 799999999999999999999988864 234678999999999999999988
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC---ccccCceEEEEEcCchhhhhh------
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK---KLGFSRLKILVYDEADHMLDE------ 262 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~~~~lViDEah~l~~~------ 262 (480)
.+-....|+.+.-+.|........ ...++|+|+||+.+--.-+.. ...++.+++||+||+|.+-+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te-----i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE-----IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH-----HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 887777888887777766443322 225899999999973322221 224678999999999998762
Q ss_pred ------------------heeeeccccHHHHHHHHHHhcc--cceeeeccccccccccEEEEEEcCch------hHHHHH
Q 011667 263 ------------------VLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDE------LAKVMV 316 (480)
Q Consensus 263 ------------------~~~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~ 316 (480)
++++|||+|+-.. +..|++- +..++.......+..+.+.++-.... ...-..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eD--vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYED--VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHH--HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 8999999996543 3445543 45666666677777777776655432 111222
Q ss_pred HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-----------------------CCcEEEecCCCCHHHHHHHHHH
Q 011667 317 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-----------------------GYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 317 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-----------------------~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
..+.+.+....+.+++|||.++..+.+.++.|.+. ......+|++|..++|..+.+.
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 33345566668899999999999999999988652 1235788999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEE----ccCCCCCCCCCCCCcccccccccccccCC--CceeEEEEeeCCc
Q 011667 374 FKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGD 444 (480)
Q Consensus 374 f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~~ 444 (480)
|..|.++||+||..++.|+++|+--++|- ||.-..+.-+ .++.+.+|..|||||.. ..|.++.+- ..|
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~d--lgilDVlQifGRAGRPqFd~~G~giIiT-t~d 491 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVD--LGILDVLQIFGRAGRPQFDSSGEGIIIT-TRD 491 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceee--ehHHHHHHHHhccCCCCCCCCceEEEEe-ccc
Confidence 99999999999999999999987555552 4433211111 34566799999999954 678888544 444
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-31 Score=274.25 Aligned_cols=302 Identities=18% Similarity=0.173 Sum_probs=223.7
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+|.. |+++|.-.--.+..| -|+.++||+|||++|++|++..... +..++||+||++||.|.++++..+...+
T Consensus 79 lg~~-~ydvQliGg~~Lh~G----~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG----NIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCCC-cchHHHhhhhhhccC----ccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 4554 888887665555555 5899999999999999999976543 3469999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC-cccc-----CceEEEEEcCchhhhhh---------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK-KLGF-----SRLKILVYDEADHMLDE--------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~-~~~~-----~~~~~lViDEah~l~~~--------- 262 (480)
|+.+.+++++....... ....++|+|+||++| ++++..+ .+.+ ..+.++||||||.|+-.
T Consensus 151 GLtv~~i~gg~~~~~r~----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQ----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred CceEEEEeCCCCHHHHH----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 99999888775433221 122589999999999 9998875 3333 58999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------------------heeee
Q 011667 263 ---------------------------------------------------------------------------VLLFS 267 (480)
Q Consensus 263 ---------------------------------------------------------------------------~~~~S 267 (480)
+.+||
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 23344
Q ss_pred ccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHH
Q 011667 268 ATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 347 (480)
Q Consensus 268 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~ 347 (480)
.|......++..-+-.+...|....... .....-........|+..+.+.+.+....+.|+||||+|++.++.++.+
T Consensus 387 GTa~te~~Ef~~iY~l~Vv~IPtnkp~~---R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~ 463 (896)
T PRK13104 387 GTADTEAYEFQQIYNLEVVVIPTNRSMI---RKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred CCChhHHHHHHHHhCCCEEECCCCCCcc---eecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 4443333222222211111111111100 1111111223456788888887877777899999999999999999999
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC-------------------------------
Q 011667 348 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ------------------------------- 396 (480)
Q Consensus 348 L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~------------------------------- 396 (480)
|.+.|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 464 L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (896)
T PRK13104 464 LKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred HHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999994 9999999999999862
Q ss_pred -------CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 397 -------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 397 -------v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
-=|||--..+ .|..-=-|-.||+||.|.+|.+..|++-.|+
T Consensus 542 ~~V~~~GGL~VIgTerh--------esrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 542 DEVIAAGGLRIIGSERH--------ESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hHHHHcCCCEEEeeccC--------chHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1245544444 5666668999999999999999988886554
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.6e-31 Score=274.88 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=205.9
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.|.|+|..++..++......+|+..++|.|||..+.+.+-..+.. ....++|||||. .|..||..++.+.+. +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~-sL~~QW~~El~~kF~---l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPE-TLQHQWLVEMLRRFN---LRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCH-HHHHHHHHHHHHHhC---CCe
Confidence 489999999887776544689999999999999865544443333 345589999998 799999999876532 222
Q ss_pred eEeecCCC-CCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEEEEEcCchhhhh-------------------
Q 011667 203 ECAVPTDS-TNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEADHMLD------------------- 261 (480)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~------------------- 261 (480)
... .... ..............+++|+|.+.+...-.. ..+.-..+++|||||||++..
T Consensus 227 ~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 222 2111 000000112222468999999987642111 122234689999999999852
Q ss_pred -hheeeeccccH-HH------------------HHHH-------------HHHhcc-c----------------c-----
Q 011667 262 -EVLLFSATFNE-TV------------------KNFV-------------TRIVKD-Y----------------N----- 286 (480)
Q Consensus 262 -~~~~~SAT~~~-~~------------------~~~~-------------~~~~~~-~----------------~----- 286 (480)
.++++|||+-. .. ..+. ..++.. + .
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 16899999521 00 0000 000000 0 0
Q ss_pred ----------------------------eeeeccc-----cccccccEEEEEEcCch-----------------------
Q 011667 287 ----------------------------QLFVKKE-----ELSLESVKQYKVYCPDE----------------------- 310 (480)
Q Consensus 287 ----------------------------~~~~~~~-----~~~~~~~~~~~~~~~~~----------------------- 310 (480)
.+..... ..+........+..+..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 0000000 00000001111111100
Q ss_pred ------------hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 011667 311 ------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK-DFGYEVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 311 ------------~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
..|+..+.+.+... ...++||||+++..+..++..|. ..|+.+..+||+|++.+|.++++.|+++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE 543 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC
Confidence 12233344322221 36799999999999999999994 6699999999999999999999999974
Q ss_pred --CCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHH
Q 011667 378 --LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERY 455 (480)
Q Consensus 378 --~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~ 455 (480)
...|||||+++++|+|++.+++||+||+| .++..|.||+||++|.|++|.+.+++....+ ..-..+.+.
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP--------~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~-t~~e~i~~~ 614 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLP--------FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG-TAQERLFRW 614 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCC--------CCHHHHHHHhcccccCCCCceEEEEEccCCC-CHHHHHHHH
Confidence 58999999999999999999999999999 5788899999999999999887655543332 234555555
Q ss_pred hCC
Q 011667 456 FDI 458 (480)
Q Consensus 456 l~~ 458 (480)
+..
T Consensus 615 ~~~ 617 (956)
T PRK04914 615 YHE 617 (956)
T ss_pred Hhh
Confidence 544
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=4.3e-31 Score=258.98 Aligned_cols=319 Identities=23% Similarity=0.242 Sum_probs=245.3
Q ss_pred cCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC----CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP----YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 104 ~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~----~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.+.....+++.+...+.|+ +|..|++++..|...- ..+=+++|.-|||||++++++++..+.. |.++..++|
T Consensus 244 ~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAP 319 (677)
T COG1200 244 PLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAP 319 (677)
T ss_pred CCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEecc
Confidence 4456677788887778998 9999999999988651 2356899999999999999999988765 669999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCc--ccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
|.-||.|-+..+.+|....++.+....|...... ...........+|+|+|.--+.+ .+.|.++.++|+||=|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccc
Confidence 9999999999999999999999888877654332 12233344458999999976644 6779999999999999
Q ss_pred hhhh--------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHH
Q 011667 258 HMLD--------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 323 (480)
Q Consensus 258 ~l~~--------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 323 (480)
++.- ..+.||||+=+... +-..+.+...-.+.....-...+....+........+ +.+..
T Consensus 395 RFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~----e~i~~ 468 (677)
T COG1200 395 RFGVHQRLALREKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVY----ERIRE 468 (677)
T ss_pred cccHHHHHHHHHhCCCCCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEEEEeccccHHHHH----HHHHH
Confidence 9753 38999999654432 3333444333333333333334444444433322222 33445
Q ss_pred hcccCCcEEEEeCchhhH--------HHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 011667 324 LGEKMGQTIIFVRTKNSA--------SALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 393 (480)
Q Consensus 324 ~~~~~~~~lVf~~s~~~~--------~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld 393 (480)
....+.++.|.|+-+++. ..++..|+.. ++++..+||.|+..++++++.+|++|+++|||||.+++-|+|
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 555788999999977654 4556666643 667999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 394 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 394 i~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
+|+++++|.++.-..| .++.-|-.||+||.+.+..|+.++.++.
T Consensus 549 VPnATvMVIe~AERFG-------LaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 549 VPNATVMVIENAERFG-------LAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCCCeEEEEechhhhh-------HHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999988754 6778899999999999999998887665
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=5.4e-31 Score=273.01 Aligned_cols=307 Identities=21% Similarity=0.227 Sum_probs=209.0
Q ss_pred CChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce
Q 011667 123 KPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (480)
.+++.|.++++.++.+ ..+++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++.+ +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 23789999999999999999888776654 5689999999999999999998754 445
Q ss_pred eeEeecCCCCCc-cccc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh------------------
Q 011667 202 SECAVPTDSTNY-VPIS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------ 261 (480)
Q Consensus 202 ~~~~~~~~~~~~-~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------ 261 (480)
+...+++.+... ...+ ......++|+|+|++.+. ..+.++++||+||+|...-
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 555665543321 1111 223335799999998874 3578899999999996531
Q ss_pred -----hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchh------HHHHHHHHHHHHhcccCCc
Q 011667 262 -----EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL------AKVMVIRDRIFELGEKMGQ 330 (480)
Q Consensus 262 -----~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~~~~~~~ 330 (480)
+++++|||++......+. ......+................+...... .....+.+.+.+..+.+.+
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~q 368 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQ 368 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCe
Confidence 388999997754433222 122222222221110111111112111100 0112344445556656778
Q ss_pred EEEEeCchh------------------------------------------------------------hHHHHHHHHHh
Q 011667 331 TIIFVRTKN------------------------------------------------------------SASALHKALKD 350 (480)
Q Consensus 331 ~lVf~~s~~------------------------------------------------------------~~~~l~~~L~~ 350 (480)
+|||+|.+. .++.+++.|.+
T Consensus 369 vll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~ 448 (679)
T PRK05580 369 VLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE 448 (679)
T ss_pred EEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH
Confidence 999987531 45677777877
Q ss_pred C--CCcEEEecCCCCH--HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC--CCCCCCC--CCCcccccc
Q 011667 351 F--GYEVTTIMGATIQ--EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP--VKHGKHL--EPDCEVYLH 422 (480)
Q Consensus 351 ~--~~~~~~l~~~~~~--~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p--~~~~~~~--~~s~~~y~q 422 (480)
. +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|++++|+.++.. .+..+.. .+....|.|
T Consensus 449 ~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 449 LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 5 7889999999874 678999999999999999999999999999999999665443 2110000 012356899
Q ss_pred cccccccCCCceeEEEEeeCCc
Q 011667 423 RIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 423 r~GR~gR~g~~g~~~~l~~~~~ 444 (480)
++||+||.+..|.++......+
T Consensus 529 ~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHhhccCCCCCCEEEEEeCCCC
Confidence 9999999999999996655443
No 85
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.2e-30 Score=251.84 Aligned_cols=308 Identities=17% Similarity=0.252 Sum_probs=234.2
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+.|. +-|+|..+|..+-++ ..|+|.|.|.+|||.++..+|...+.. ..++++.+|-++|-.|-++++..-++..
T Consensus 126 YPF~-LDpFQ~~aI~Cidr~--eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCIDRG--ESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred CCcc-cCchHhhhhhhhcCC--ceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc
Confidence 4554 789999999999888 999999999999999999988888765 3489999999999999999998877666
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh----------------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---------------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~---------------- 262 (480)
|+- .|.-..+. .+.-+|+|.+.|..++.++.--+..+.+||+||+|.|-+.
T Consensus 200 GLM----TGDVTInP---------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 200 GLM----TGDVTINP---------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred cee----ecceeeCC---------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 642 22222221 2468999999999999998877899999999999999873
Q ss_pred --heeeeccccHHHH--HHHHHHhcccceeeeccccccccccEEEEEEcC--------ch-----hHH------------
Q 011667 263 --VLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--------DE-----LAK------------ 313 (480)
Q Consensus 263 --~~~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----~~k------------ 313 (480)
.+++|||+|+..+ +++..+.+.|.++.. ...++..+.|+.+... ++ ...
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 7899999997543 444445455544432 3444455555533321 00 001
Q ss_pred --------------------------HHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC--------------
Q 011667 314 --------------------------VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY-------------- 353 (480)
Q Consensus 314 --------------------------~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------- 353 (480)
+..++..+.. ....|+|||+-|+++|+.++-.|.++.+
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~--~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME--RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHh--hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 1111111111 1346999999999999999988876322
Q ss_pred -------------------------cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCC
Q 011667 354 -------------------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK 408 (480)
Q Consensus 354 -------------------------~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~ 408 (480)
.+.++|+++-+--++-+.-.|.+|-+++|+||..++.|+|.|.-++|+.--.-+.
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 2678999999999998888999999999999999999999999999987666677
Q ss_pred CCCCCCCCcccccccccccccCCC--ceeEEEEeeCCccHHHH
Q 011667 409 HGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIM 449 (480)
Q Consensus 409 ~~~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~~~~~~~~~ 449 (480)
|...++-|.-+|+|+.|||||.|. .|.||+++.++-+....
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~a 545 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVA 545 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHH
Confidence 777777788899999999999985 68888888765544333
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.9e-30 Score=263.99 Aligned_cols=308 Identities=17% Similarity=0.187 Sum_probs=231.2
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
++....+|.. |+++|.-+--.+..| -|....||+|||+++.+|++..... |..+-|++||.-||.|-++++.
T Consensus 71 Ea~~R~~g~~-~~dvQlig~l~l~~G----~iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 71 EGAKRVLGLR-PFDVQIIGGIVLHEG----NIAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHhcC----CcccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHH
Confidence 3444445665 999998776666666 3999999999999999888766544 5679999999999999999999
Q ss_pred HHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh---
Q 011667 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE--- 262 (480)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~--- 262 (480)
.+...+|+.+.+..+...... ++....++|+++|...| .++|..+ ....+.+.+.||||+|.++-.
T Consensus 143 ~~~~~LGl~vg~i~~~~~~~~----r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 143 ELYRWLGLTVGLNLNSMSPDE----KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHhcCCeEEEeCCCCCHHH----HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 999999999888765432221 22233589999999876 3344321 122456889999999987520
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence
Q ss_pred -------------------------------------------------------------------------------h
Q 011667 263 -------------------------------------------------------------------------------V 263 (480)
Q Consensus 263 -------------------------------------------------------------------------------~ 263 (480)
+
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 5
Q ss_pred eeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHH
Q 011667 264 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 343 (480)
Q Consensus 264 ~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~ 343 (480)
.+||.|.......+..-+-.+ .+.++..... ......-........|...+.+.+......+.|+||||+|+..++.
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~--vv~IPtnkp~-~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNME--VITIPTNRPV-IRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCC--EEEcCCCCCe-eeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 667777765544433323222 2222221111 1111111122345667888888776666688999999999999999
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEccCCCCCCCCCCC
Q 011667 344 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---QVN-----LIVNYDPPVKHGKHLEP 415 (480)
Q Consensus 344 l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~---~v~-----~Vi~~~~p~~~~~~~~~ 415 (480)
++..|.+.++++..+|+.+.+.++..+...++.|. |+|||++++||+||+ +|. |||+++.| .
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~p--------e 525 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERH--------E 525 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecC--------C
Confidence 99999999999999999999888888888777776 999999999999995 889 99999999 8
Q ss_pred CcccccccccccccCCCceeEEEEeeCCcc
Q 011667 416 DCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 416 s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
|...|.|++|||||.|.+|.+..|++..|+
T Consensus 526 s~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 526 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred cHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999999999987654
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.8e-30 Score=263.77 Aligned_cols=306 Identities=17% Similarity=0.152 Sum_probs=233.0
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHh-hccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
+....+|.. |+++|.-.--.+..| -|+.+.||+|||+++.+|++ +.+. +..+-|++||..||.|.++++.
T Consensus 73 a~~R~lg~~-~~dvQlig~l~L~~G----~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 73 ASKRVLGMR-HFDVQLIGGMVLHEG----KIAEMKTGEGKTLVATLPAYLNALT----GKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred HHHHHhCCC-CCccHHHhhHHhcCC----chhhhhcCCCcHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHH
Confidence 333335665 889998777666665 49999999999999999995 5553 3357799999999999999999
Q ss_pred HHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcCc------cccCceEEEEEcCchhhhhh---
Q 011667 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDE--- 262 (480)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~~~--- 262 (480)
.+...+|+.+.++.++......... ..++|+|+||++| .+++..+. ...+.+.++||||||.|+-.
T Consensus 144 ~l~~~LGlsv~~i~~~~~~~er~~~----y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 144 PLYEFLGLSVGVILSGMSPEERREA----YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred HHHhhcCCeEEEEcCCCCHHHHHHh----cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 9999999999888876544322211 2489999999999 88887643 23678999999999998630
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------heeeeccccHHH
Q 011667 263 --------------------------------------------------------------------VLLFSATFNETV 274 (480)
Q Consensus 263 --------------------------------------------------------------------~~~~SAT~~~~~ 274 (480)
+.+||.|.....
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 379 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA 379 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH
Confidence 567888876655
Q ss_pred HHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc
Q 011667 275 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 354 (480)
..+..-+-.+...+....... .....-........|...+...+.+....+.|+||||+|+..++.++..|...+++
T Consensus 380 ~E~~~iY~l~vv~IPtnkp~~---r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 380 EEFREIYNLDVVVIPTNRPMI---RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHHHHHhCCCEEEcCCCCCee---eeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 444333333222222211111 11111122234567888888877666667889999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC-------------------------------------
Q 011667 355 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV------------------------------------- 397 (480)
Q Consensus 355 ~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v------------------------------------- 397 (480)
+..+|+. +.+|...+..|..+...|+|||++++||+||+--
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 7899999999999999999999999999998742
Q ss_pred -CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 398 -NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 398 -~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
=|||-...| .|..---|-.||+||.|.+|.+..|++-.|+
T Consensus 535 GLhVigTerh--------esrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 535 GLHVIGTERH--------ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCEEEecccC--------chHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 366666666 6777778999999999999999988886554
No 88
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-30 Score=251.73 Aligned_cols=328 Identities=16% Similarity=0.179 Sum_probs=224.7
Q ss_pred hhcccccCCCCccEEEEccCCCccchHhHHHHhhcc----CCC-CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeE
Q 011667 130 ISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV----DPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSEC 204 (480)
Q Consensus 130 ~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l----~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 204 (480)
+.+.+|..+ .-+||||.||||||.. +|-+-+- ..+ ..+..+-|.-|.|..|..++++...-...++-.+.+
T Consensus 263 ~IMEaIn~n--~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINEN--PVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHhhcC--CeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 444555555 7899999999999984 4543322 111 123355566699999888887665433335555555
Q ss_pred eecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh----------hh-------------
Q 011667 205 AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM----------LD------------- 261 (480)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l----------~~------------- 261 (480)
.+...+.-. ..+.|.++|.|.|++.+++ .+.+.++++||+||||.- +.
T Consensus 339 qIRfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 339 QIRFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 554443322 2368999999999999987 566999999999999972 11
Q ss_pred ------hheeeeccccHHH-HHHHHHHhcccceeeeccccccccccEEEEEEcC-chhHHHHHHHHHHHHhcccCCcEEE
Q 011667 262 ------EVLLFSATFNETV-KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP-DELAKVMVIRDRIFELGEKMGQTII 333 (480)
Q Consensus 262 ------~~~~~SAT~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~lV 333 (480)
.+++||||+.-.- ...-..|-..|..+.+..+.+++.. |+-...+ +.......-...+++.+ +.|.+||
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsI--HF~krT~~DYi~eAfrKtc~IH~kL-P~G~ILV 486 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSI--HFNKRTPDDYIAEAFRKTCKIHKKL-PPGGILV 486 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEE--EeccCCCchHHHHHHHHHHHHhhcC-CCCcEEE
Confidence 2899999987322 1112223333445555544443332 2222222 22222222223344444 8899999
Q ss_pred EeCchhhHHHHHHHHHhC--------------------------------------------------------------
Q 011667 334 FVRTKNSASALHKALKDF-------------------------------------------------------------- 351 (480)
Q Consensus 334 f~~s~~~~~~l~~~L~~~-------------------------------------------------------------- 351 (480)
|+....++..+++.|++.
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 999999999999999760
Q ss_pred -------------------------------------CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 011667 352 -------------------------------------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 394 (480)
Q Consensus 352 -------------------------------------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 394 (480)
.+-|.++++-++..++.++++.-..|..-++|+|+++++.|.|
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 2337888999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCCc----------ccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 395 QQVNLIVNYDPPVKHGKHLEPDC----------EVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 395 ~~v~~Vi~~~~p~~~~~~~~~s~----------~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|++.+||+.+.-+...++...++ .+--||+|||||.| +|+||.||+.. .+-..++++-...|...
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA---Vf~~~Fe~fS~PEIlk~- 721 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA---VFSNDFEEFSLPEILKK- 721 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH---HhhcchhhhccHHHhhC-
Confidence 99999999776655444332333 44469999999987 99999999854 33346777777777554
Q ss_pred CCHHHHHHHHHHcCC
Q 011667 465 NSDEDFKAALKAAGL 479 (480)
Q Consensus 465 ~~~~~~~~~~~~~~~ 479 (480)
..+.+.-.++.|||
T Consensus 722 -Pve~lvLqMKsMnI 735 (1172)
T KOG0926|consen 722 -PVESLVLQMKSMNI 735 (1172)
T ss_pred -cHHHHHHHHHhcCc
Confidence 56677777888876
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-29 Score=259.03 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=127.6
Q ss_pred cccCCCCHHHHHHHHh----hcCCCCC---hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeE
Q 011667 102 FEDLNLSPELLKGLYV----EMKFQKP---SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174 (480)
Q Consensus 102 f~~~~l~~~l~~~l~~----~~~~~~p---~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~ 174 (480)
-+.+++.+++.+.+.. ..||..| +|+|.++++.++.+ +++++.++||+|||++|++|++..+... ..+
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~--~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v 138 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMH--KGFITEMQTGEGKTLTAVMPLYLNALTG---KPV 138 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHhhc---CCe
Confidence 3567888999888873 3799999 99999999999999 9999999999999999999999776542 248
Q ss_pred EEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcCccccC-------
Q 011667 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKKLGFS------- 246 (480)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~~~~~------- 246 (480)
+||+||++||.|.++++..++..+++++.+++++.....+... ..++|+|+||++| +++++.+.+.++
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~----y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI----YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH----cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 9999999999999999999999999999888887765443211 1489999999999 999988755554
Q ss_pred ceEEEEEcCchhhhh
Q 011667 247 RLKILVYDEADHMLD 261 (480)
Q Consensus 247 ~~~~lViDEah~l~~ 261 (480)
.+.++||||||.|+-
T Consensus 215 ~~~~~IIDEADsmLi 229 (970)
T PRK12899 215 GFYFAIIDEVDSILI 229 (970)
T ss_pred cccEEEEechhhhhh
Confidence 568999999999875
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=4.2e-30 Score=254.28 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=193.4
Q ss_pred CChHHHHhhcccccC----CCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.|+++|.+++..+.. + +..++++|||+|||..++..+-.. . ..+|||||+++|+.||.+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~--~~gvivlpTGaGKT~va~~~~~~~-~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTE--RRGVIVLPTGAGKTVVAAEAIAEL-K-----RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccC--CceEEEeCCCCCHHHHHHHHHHHh-c-----CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 499999999999988 6 899999999999999866555433 2 239999999999999997777765432
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------h-he
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------E-VL 264 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------~-~~ 264 (480)
..+ -.++++..+... ..|.|+|.+.+........+..+.+++||+||||++.. . .+
T Consensus 108 -~~~-g~~~~~~~~~~~--------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~L 177 (442)
T COG1061 108 -DEI-GIYGGGEKELEP--------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRL 177 (442)
T ss_pred -ccc-ceecCceeccCC--------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccccee
Confidence 011 112222111100 36999999999775211233345799999999999875 2 69
Q ss_pred eeeccccHHHHHHHHHHhcc--cceeeeccccc----cccccEEEEEEcC------------------------------
Q 011667 265 LFSATFNETVKNFVTRIVKD--YNQLFVKKEEL----SLESVKQYKVYCP------------------------------ 308 (480)
Q Consensus 265 ~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~------------------------------ 308 (480)
++|||++.........++.. +........+. -+.......+...
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 99999763221111111111 11221111110 0111111111110
Q ss_pred -------chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 309 -------DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 309 -------~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
....+...+...+.... ...+++|||.+..++..++..|...+. +..+.+..+..+|..+++.|+.|.+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 00111222222222222 467999999999999999999988877 899999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCccccccccccccc
Q 011667 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 429 (480)
Q Consensus 382 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR 429 (480)
||++.++.+|+|+|+++++|...+. .|...|+||+||.-|
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t--------~S~~~~~Q~lGR~LR 375 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPT--------GSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCC--------CcHHHHHHHhhhhcc
Confidence 9999999999999999999999987 899999999999999
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=262.34 Aligned_cols=318 Identities=22% Similarity=0.266 Sum_probs=242.7
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC--------CCCeEEEE
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--------KAPQALCI 177 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~--------~~~~~lil 177 (480)
.+|..-..++ +|...+.++|....+..+.+. .++++|||||+|||..+++-||+.+.... ...++.++
T Consensus 295 elP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~-EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 295 ELPKWNQPAF---FGKQSLNRIQSKVYDAALRGD-ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred CCcchhhhhc---ccchhhhHHHHHHHHHHhcCc-CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 3444444444 478889999999999999985 79999999999999999999998875432 24579999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-cc-ccCceEEEEEcC
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KL-GFSRLKILVYDE 255 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~-~~~~~~~lViDE 255 (480)
+|.++|++.|...+.+....+|+.+.-..+....... ...+++|+||||+..--.-++. .. ..+-++++|+||
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~-----qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE-----QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhh-----hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhh
Confidence 9999999999999999989999998777666543322 2335799999999874433331 11 233578999999
Q ss_pred chhhhh------------------------hheeeeccccHHHHHHHHHHh-cccceeeeccccccccccEEEEEEcCch
Q 011667 256 ADHMLD------------------------EVLLFSATFNETVKNFVTRIV-KDYNQLFVKKEELSLESVKQYKVYCPDE 310 (480)
Q Consensus 256 ah~l~~------------------------~~~~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
.|.+.+ +.+++|||+|+-.. +..|+ .++..++......++..+.|.++-+...
T Consensus 446 IHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek 523 (1674)
T KOG0951|consen 446 IHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEK 523 (1674)
T ss_pred hhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh--hHHHhccCcccccccCcccCcCCccceEeccccC
Confidence 998855 28999999996542 23332 3445666777778888888888866532
Q ss_pred --hHH----HHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----------------------------------
Q 011667 311 --LAK----VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---------------------------------- 350 (480)
Q Consensus 311 --~~k----~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---------------------------------- 350 (480)
..+ .+...+.+.+... .+++|||+.+++++-..|+.++.
T Consensus 524 ~~~~~~qamNe~~yeKVm~~ag-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 524 KPLKRFQAMNEACYEKVLEHAG-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred CchHHHHHHHHHHHHHHHHhCC-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 222 2244455666653 48999999999998888877763
Q ss_pred ---CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----ccCCCCCCCCCCCCccccccc
Q 011667 351 ---FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHR 423 (480)
Q Consensus 351 ---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr 423 (480)
+.+.++++|+||+..+|..+.+.|.+|.+++||+|-.+++|+++|..+++|- |++-+. .|.+.++.+.+||
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg--~w~elsp~dv~qm 680 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKG--RWTELSPLDVMQM 680 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccC--ccccCCHHHHHHH
Confidence 2456889999999999999999999999999999999999999999888884 665543 3444789999999
Q ss_pred ccccccCC--CceeEE
Q 011667 424 IGRAGRFG--RKGVVF 437 (480)
Q Consensus 424 ~GR~gR~g--~~g~~~ 437 (480)
.||+||.+ +.|..+
T Consensus 681 lgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 681 LGRAGRPQYDTCGEGI 696 (1674)
T ss_pred HhhcCCCccCcCCcee
Confidence 99999976 345555
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.7e-29 Score=263.60 Aligned_cols=299 Identities=19% Similarity=0.228 Sum_probs=194.7
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
++...|+|+|..+......+ ..+++.||||+|||.+++.++...+. .....+++|..||+++++|+++++.++....
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~p--gl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQP--GLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred cCCCCChHHHHHHHhhccCC--CeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 34457999999875443334 68999999999999998776654333 3335689999999999999999988654322
Q ss_pred --CceeeEeecCCCCCcc--c-------------------ccC----CCCCCCeEEEeChHHHHHHHhc-CccccCce--
Q 011667 199 --GITSECAVPTDSTNYV--P-------------------ISK----RPPVTAQVVIGTPGTIKKWMSA-KKLGFSRL-- 248 (480)
Q Consensus 199 --~~~~~~~~~~~~~~~~--~-------------------~~~----~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~-- 248 (480)
...+...++....+.. . .+. ...--.+|+|||...++..+-. +...++.+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 2234444443321100 0 000 0001268999999887644332 22222323
Q ss_pred --EEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhccc---------ceeee-cc---ccc
Q 011667 249 --KILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDY---------NQLFV-KK---EEL 295 (480)
Q Consensus 249 --~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~---------~~~~~-~~---~~~ 295 (480)
++|||||+|.+-. .+++||||+|......+...+... ..+.. .. ...
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 4899999997532 389999999987765443322110 00000 00 000
Q ss_pred ccc------ccEEEE-E-Ec--CchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC---CcEEEecCCC
Q 011667 296 SLE------SVKQYK-V-YC--PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG---YEVTTIMGAT 362 (480)
Q Consensus 296 ~~~------~~~~~~-~-~~--~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~---~~~~~l~~~~ 362 (480)
... .....+ + .. ...... ..+.+.+.+....++++|||||+++.|..+++.|.+.+ .++..+||.+
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~-~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPD-LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCH-HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 000 001111 0 00 100111 22233344444467899999999999999999998764 6899999999
Q ss_pred CHHHH----HHHHHHH-hcCC---CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC
Q 011667 363 IQEER----DKIVKEF-KDGL---TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432 (480)
Q Consensus 363 ~~~~r----~~~~~~f-~~g~---~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~ 432 (480)
++.+| .++++.| ++|+ ..|||||+++++|+|| +++++|....| +..|+||+||++|.++
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP----------idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP----------VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC----------HHHHHHHHhccCCCCC
Confidence 99999 4677888 6666 4799999999999999 68999998888 6789999999999875
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.9e-30 Score=258.31 Aligned_cols=287 Identities=20% Similarity=0.218 Sum_probs=189.1
Q ss_pred EEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCC-cccccC-CCC
Q 011667 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN-YVPISK-RPP 221 (480)
Q Consensus 144 lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 221 (480)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +..+...+++.+.. ....+. ...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999987766555443 5589999999999999999998764 33444555544322 111222 223
Q ss_pred CCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------------hheeeeccccHHHHHHH
Q 011667 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-----------------------EVLLFSATFNETVKNFV 278 (480)
Q Consensus 222 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-----------------------~~~~~SAT~~~~~~~~~ 278 (480)
...+|+|+|+..+. ..+.++++|||||+|...- +++++|||+..+....+
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 35789999998773 3578899999999997541 28899999664432222
Q ss_pred HHHhcccceeeeccccccccccEEEEEEcCchh---HHHHHHHHHHHHhcccCCcEEEEeCchhh---------------
Q 011667 279 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL---AKVMVIRDRIFELGEKMGQTIIFVRTKNS--------------- 340 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~~~lVf~~s~~~--------------- 340 (480)
. ......+...............++...... .....+.+.+.+..+.++++|||+|++..
T Consensus 148 ~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C 225 (505)
T TIGR00595 148 K--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCC 225 (505)
T ss_pred h--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCC
Confidence 1 112222222111111111111122221111 11233445566666677899999776542
Q ss_pred ---------------------------------------------HHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHH
Q 011667 341 ---------------------------------------------ASALHKALKDF--GYEVTTIMGATIQEER--DKIV 371 (480)
Q Consensus 341 ---------------------------------------------~~~l~~~L~~~--~~~~~~l~~~~~~~~r--~~~~ 371 (480)
++++.+.|.+. +.++..+|+++++..+ ..++
T Consensus 226 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l 305 (505)
T TIGR00595 226 PNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALL 305 (505)
T ss_pred CCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHH
Confidence 57788888776 7789999999987665 8999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEE--ccCCCCCCCCC--CCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVN--YDPPVKHGKHL--EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~--~~~p~~~~~~~--~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
+.|++|+.+|||+|+++++|+|+|++++|+. +|...+..+.. ......|.|++||+||.+..|.++......+.
T Consensus 306 ~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 306 NQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 9999999999999999999999999999864 44332111100 01245689999999999999999855544443
No 94
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=243.50 Aligned_cols=314 Identities=18% Similarity=0.228 Sum_probs=223.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+.+++.|+||||||+. +|-+-.-.......++.+.-|.|..|..++.+... .+..+|-.+.+.+.....
T Consensus 67 qvlIviGeTGsGKSTQ--ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~-------- 136 (674)
T KOG0922|consen 67 QVLIVIGETGSGKSTQ--IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS-------- 136 (674)
T ss_pred CEEEEEcCCCCCcccc--HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc--------
Confidence 8999999999999994 44432212112233466777999998888866654 444455444444433322
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hheeeeccccHHHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTR 280 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~ 280 (480)
....+.|.++|.|.|++.+..+. .++++++||+||||.-.- .++++|||+.... ++.
T Consensus 137 ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~k---fS~ 212 (674)
T KOG0922|consen 137 TSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEK---FSE 212 (674)
T ss_pred CCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHH---HHH
Confidence 22247899999999999888744 489999999999997321 3899999998543 677
Q ss_pred HhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHH-HHHhcccCCcEEEEeCchhhHHHHHHHHHhC----C---
Q 011667 281 IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR-IFELGEKMGQTIIFVRTKNSASALHKALKDF----G--- 352 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~-l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~--- 352 (480)
|+.....+.+..+..+ +..++...+....--..+... -.+..++.+.+|||.+.+++++.+++.|.+. +
T Consensus 213 yF~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~ 289 (674)
T KOG0922|consen 213 YFNNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDC 289 (674)
T ss_pred HhcCCceEeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccC
Confidence 8877666666555443 334444433322222221110 1233468889999999999999999999765 1
Q ss_pred -CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCC-------CCC---CCCCccccc
Q 011667 353 -YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH-------GKH---LEPDCEVYL 421 (480)
Q Consensus 353 -~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~-------~~~---~~~s~~~y~ 421 (480)
.-+.++||.|+.+++.++++.-..|..+|+++|++++..+.|+++.+||+-+.-+.. .+. .+-|..+-.
T Consensus 290 ~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~ 369 (674)
T KOG0922|consen 290 PELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASAN 369 (674)
T ss_pred cceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHh
Confidence 135789999999999999999999999999999999999999999999986544322 221 134667779
Q ss_pred ccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHHcCC
Q 011667 422 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 479 (480)
Q Consensus 422 qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 479 (480)
||.|||||.| +|+|+.+|++.+ ++++...+++++. -++....-.|+.+|+
T Consensus 370 QRaGRAGRt~-pGkcyRLYte~~-------~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi 420 (674)
T KOG0922|consen 370 QRAGRAGRTG-PGKCYRLYTESA-------YDKMPLQTVPEIQRVNLSSAVLQLKALGI 420 (674)
T ss_pred hhcccCCCCC-CceEEEeeeHHH-------HhhcccCCCCceeeechHHHHHHHHhcCC
Confidence 9999999985 999999998542 4666677777776 666666666776664
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=245.35 Aligned_cols=305 Identities=17% Similarity=0.220 Sum_probs=219.3
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.++|. |-.+|++||-++.+| ..|+|.|+|.+|||+++..+|.... ..+.++++.+|-++|-.|-++.|+.-+..
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg--~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERG--DSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcC--CeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccc
Confidence 36676 889999999999999 8999999999999998777665332 23668999999999999999999987665
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---------------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE--------------- 262 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~--------------- 262 (480)
.| .+.|....+. .+.++|+|.+.|..++.++.-.++++.+||+||+|.+.+.
T Consensus 367 vg----LlTGDvqinP---------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 367 VG----LLTGDVQINP---------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred cc----eeecceeeCC---------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccc
Confidence 55 3333332222 3679999999999999998877899999999999998773
Q ss_pred ---heeeeccccHHHH--HHHHHHhcccceeeeccccccccccEEEEEEcCc----------------------------
Q 011667 263 ---VLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD---------------------------- 309 (480)
Q Consensus 263 ---~~~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 309 (480)
++++|||.|+..+ +++.+.-. ..+++.....++..+.|++..-.+
T Consensus 434 HV~~IlLSATVPN~~EFA~WIGRtK~--K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTLEFADWIGRTKQ--KTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cceEEEEeccCCChHHHHHHhhhccC--ceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 8999999996554 33333322 222222222222222222211100
Q ss_pred ------------------------------------hhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHhCC
Q 011667 310 ------------------------------------ELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFG 352 (480)
Q Consensus 310 ------------------------------------~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~ 352 (480)
...+.....+++..+. ...-|++|||-|++.|+..+++|...+
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 0000001111111111 134589999999999999999987622
Q ss_pred ---------------------------------------CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 011667 353 ---------------------------------------YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 393 (480)
Q Consensus 353 ---------------------------------------~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gld 393 (480)
..+..+||++-+--+.-+.--|..|-++||+||..+++|+|
T Consensus 592 L~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 592 LTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVN 671 (1248)
T ss_pred cccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcC
Confidence 23688999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC--ceeEEEEeeCC
Q 011667 394 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDG 443 (480)
Q Consensus 394 i~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~~~ 443 (480)
.|.-++||.-=.-..|...+.-.+-+|.|++|||||.|- .|.++++..+.
T Consensus 672 MPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 672 MPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 998887775433333333344578899999999999884 57777666543
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.2e-29 Score=253.76 Aligned_cols=302 Identities=18% Similarity=0.148 Sum_probs=221.4
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+|.. |+++|.-.--.+..| -|+.++||.|||++|.+|++..... +..+.||+|++.||.|.++++..+...+
T Consensus 79 lgm~-~ydVQliGgl~L~~G----~IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDSN----RIAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCCC-cCchHHhcchHhcCC----ccccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5654 888887655555555 6999999999999999999866544 4459999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC-ccc-----cCceEEEEEcCchhhhhh---------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK-KLG-----FSRLKILVYDEADHMLDE--------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~-~~~-----~~~~~~lViDEah~l~~~--------- 262 (480)
|+.+.++.++... ...+....++|+++||++| +++|..+ .+. ...+.++||||||.++..
T Consensus 151 Glsv~~i~~~~~~----~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 151 GLTVGINVAGLGQ----QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred CCeEEEecCCCCH----HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 9999888765543 2233344689999999999 8888765 222 267899999999998642
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence
Q ss_pred heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHH
Q 011667 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSAS 342 (480)
Q Consensus 263 ~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~ 342 (480)
+.+||.|.......+..-+-.+ .+.++... +.......-........|+..+.+.+......+.++||||+|+..++
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l~--Vv~IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGLD--TVVVPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred hhcccCCChHHHHHHHHHhCCC--EEECCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 1222222222111111111100 00000000 00001111111234567777888778777778999999999999999
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC--------------------------
Q 011667 343 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ-------------------------- 396 (480)
Q Consensus 343 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~-------------------------- 396 (480)
.++.+|...++.+..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999872
Q ss_pred -----------CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 397 -----------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 397 -----------v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
-=|||-...+ .|..-=-|-.||+||.|.+|.+..|++-.|+
T Consensus 542 ~~~~~~V~~~GGL~VIgTerh--------eSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERH--------ESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccC--------chHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2366655555 6666678999999999999999988886554
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.8e-28 Score=253.54 Aligned_cols=348 Identities=18% Similarity=0.205 Sum_probs=264.2
Q ss_pred cCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC----CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 104 ~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.++.+.+....+...|+|. -||-|..||..+.+. ...|=++||.-|.|||-+++=+++..+.. +.+|.||||
T Consensus 576 af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVP 651 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVP 651 (1139)
T ss_pred CCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcc
Confidence 3566777888888878887 789999999888753 34588999999999999888887777654 679999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
|.-||+|-++.|+.-+...++++..+....+...+ ..........||+|||.--| +..+.|.+++++||||=|
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 99999999999999998889888776555443322 22334455689999998655 347789999999999999
Q ss_pred hhhh-------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHh
Q 011667 258 HMLD-------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 324 (480)
Q Consensus 258 ~l~~-------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 324 (480)
++.- .++-+|||+=+....+....+++...|..++.. ...+..++...++. .+.+.+.+.
T Consensus 727 RFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~~-----~ireAI~RE 799 (1139)
T COG1197 727 RFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDDL-----LIREAILRE 799 (1139)
T ss_pred hcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCChH-----HHHHHHHHH
Confidence 9754 388999998776666565556665555443332 22333444333322 223334444
Q ss_pred cccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 011667 325 GEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 402 (480)
Q Consensus 325 ~~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~ 402 (480)
...+|++-...|.++..+.++..|+.+ ...+...||.|+..+-+.++..|.+|+++|||||-+++.|||||+++++|.
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 558899999999999999999999887 567999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc--HHHHHHHHHHhCCcceecCCCHHHHHHHHHHcCC
Q 011667 403 YDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD--MIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 479 (480)
Q Consensus 403 ~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
-+.... ..++..|..||+||.++.+.||.++.+... ..-.++++. |.+...-.-.|+-+++++.|
T Consensus 880 e~AD~f-------GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~a-----I~~~~~LGaGf~lA~~DLeI 946 (1139)
T COG1197 880 ERADKF-------GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEA-----IASFTELGAGFKLAMHDLEI 946 (1139)
T ss_pred eccccc-------cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHH-----HHhhhhcCchHHHHhcchhc
Confidence 888864 477889999999999999999988864332 112222222 23333445567777776654
No 98
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-28 Score=253.68 Aligned_cols=314 Identities=18% Similarity=0.228 Sum_probs=227.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+.+++.|+||||||+..-..+++... ..+.++.+.-|.|--|..++..+.+ ++...|-.+.+.+-..+.
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~-------- 135 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESK-------- 135 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeecc--------
Confidence 88999999999999964444444322 3344666667999888888877765 444444444443333322
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------------------hheeeeccccHHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------------EVLLFSATFNETVKNFVT 279 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------------~~~~~SAT~~~~~~~~~~ 279 (480)
....+.|-++|.|.|++.+..+.. ++.+++||+||||+-.- .+|+||||+...- +.
T Consensus 136 ~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~r---fs 211 (845)
T COG1643 136 VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAER---FS 211 (845)
T ss_pred CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHH---HH
Confidence 223478999999999999998554 89999999999997322 2899999998654 66
Q ss_pred HHhcccceeeeccccccccccEEEEEEcCchhH-HHHHHHHHHHH-hcccCCcEEEEeCchhhHHHHHHHHHh----CCC
Q 011667 280 RIVKDYNQLFVKKEELSLESVKQYKVYCPDELA-KVMVIRDRIFE-LGEKMGQTIIFVRTKNSASALHKALKD----FGY 353 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~ 353 (480)
.++.+...+.+....++ +..+|........ -...+...+.. ..+..|.+|||.+...+.+..++.|.. ...
T Consensus 212 ~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~ 288 (845)
T COG1643 212 AYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDL 288 (845)
T ss_pred HHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCc
Confidence 77777666766655443 3333433322222 22333332322 334688999999999999999999987 358
Q ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCC----------CCCccccccc
Q 011667 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL----------EPDCEVYLHR 423 (480)
Q Consensus 354 ~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~----------~~s~~~y~qr 423 (480)
.+.++||.|+..++.++++.-..|..+|++||++++++|.||+|.+||+-+.-+...++. +-|-.+..||
T Consensus 289 ~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QR 368 (845)
T COG1643 289 EILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQR 368 (845)
T ss_pred EEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhh
Confidence 899999999999999999988888888999999999999999999999977665544321 2356677899
Q ss_pred ccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHHcCC
Q 011667 424 IGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 479 (480)
Q Consensus 424 ~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 479 (480)
.||+||.+ +|.||.+|++.+ +..++....+|+- .++...-..++..|+
T Consensus 369 aGRAGR~~-pGicyRLyse~~-------~~~~~~~t~PEIlrtdLs~~vL~l~~~G~ 417 (845)
T COG1643 369 AGRAGRTG-PGICYRLYSEED-------FLAFPEFTLPEILRTDLSGLVLQLKSLGI 417 (845)
T ss_pred ccccccCC-CceEEEecCHHH-------HHhcccCCChhhhhcchHHHHHHHHhcCC
Confidence 99999985 999999998532 3456666666665 677777777776664
No 99
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.8e-28 Score=233.63 Aligned_cols=324 Identities=18% Similarity=0.237 Sum_probs=225.7
Q ss_pred HhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCe-EEEEecCHHHHHHHHHHHHH-HhcccCceeeEee
Q 011667 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ-ALCICPTRELAIQNLEVLRK-MGKHTGITSECAV 206 (480)
Q Consensus 129 ~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~-~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~ 206 (480)
.+.+.++-.. +.+||.|.||||||. .+|-+-+-...-++.+ +-+.-|.|..|..++.++.+ ++..+|-.+.+.+
T Consensus 271 dell~av~e~--QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsI 346 (902)
T KOG0923|consen 271 DELLKAVKEH--QVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSI 346 (902)
T ss_pred HHHHHHHHhC--cEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEE
Confidence 3444444444 899999999999999 4565443332223333 66666999999998866553 4433333332222
Q ss_pred cCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hheeee
Q 011667 207 PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVLLFS 267 (480)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~~~S 267 (480)
.... -....+-|-++|.|.|++.+.. ...+.++++|||||||.-.- .+++.|
T Consensus 347 RFEd--------cTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 347 RFED--------CTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred Eecc--------ccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 2221 1112467999999999988775 55689999999999997321 288999
Q ss_pred ccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHH--HhcccCCcEEEEeCchhhHHHHH
Q 011667 268 ATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF--ELGEKMGQTIIFVRTKNSASALH 345 (480)
Q Consensus 268 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~~~lVf~~s~~~~~~l~ 345 (480)
||+...- ++.|+.+...+.++.... .+.-+|...+.....-..+.. +. +..++.+.+|||....++.+...
T Consensus 418 AT~DAek---FS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~t-VlqIH~tqp~GDILVFltGQeEIEt~~ 490 (902)
T KOG0923|consen 418 ATMDAEK---FSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVT-VLQIHLTQPLGDILVFLTGQEEIETVK 490 (902)
T ss_pred cccCHHH---HHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhh-heeeEeccCCccEEEEeccHHHHHHHH
Confidence 9988543 667777766666655544 344555555544333333322 22 33457799999999999988887
Q ss_pred HHHHhC---------CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCC----
Q 011667 346 KALKDF---------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH---- 412 (480)
Q Consensus 346 ~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~---- 412 (480)
..|..+ .+-++++|+.+++..+.++++.-.+|..+|++||+++++.|.|+++.+||+-+.-+.-.++
T Consensus 491 e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtG 570 (902)
T KOG0923|consen 491 ENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTG 570 (902)
T ss_pred HHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcC
Confidence 777542 4557899999999999999999999999999999999999999999999986655422221
Q ss_pred ------CCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHHcCC
Q 011667 413 ------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 479 (480)
Q Consensus 413 ------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 479 (480)
.+.|-.+-.||+||+||.| +|+|+.||+. +.+...++. .+++++. .++..+.-.|++.||
T Consensus 571 mesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~---~aY~~eLE~---~t~PEIqRtnL~nvVL~LkSLGI 637 (902)
T KOG0923|consen 571 MESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA---WAYEHELEE---MTVPEIQRTNLGNVVLLLKSLGI 637 (902)
T ss_pred ceeEEEeeechhhhhhhccccCCCC-CCceEEeech---hhhhhhhcc---CCCcceeeccchhHHHHHHhcCc
Confidence 1235556689999999987 9999999973 334444443 3334443 578888888888886
No 100
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=3.4e-28 Score=218.20 Aligned_cols=182 Identities=42% Similarity=0.709 Sum_probs=156.0
Q ss_pred cccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC--CCCCeEEEEec
Q 011667 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--LKAPQALCICP 179 (480)
Q Consensus 102 f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~--~~~~~~lil~P 179 (480)
|+++++++.+.+.+.. +|+..|+++|.++++.+++| +++++.+|||+|||++|++|+++.+... ..+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~--~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSG--RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcC
Confidence 7889999999999987 89999999999999999998 9999999999999999999999998775 46779999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
+++|+.|+...+..+....++.+....++...... ......+++|+|+||++|..++.+....+.+++++|+||||.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999987777777766665543221 1112246899999999999999887788899999999999987
Q ss_pred hh------------------hheeeeccccHHHHHHHHHHhccccee
Q 011667 260 LD------------------EVLLFSATFNETVKNFVTRIVKDYNQL 288 (480)
Q Consensus 260 ~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~ 288 (480)
.+ +++++|||+++.+..++..++.++..+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 54 389999999999999888888876543
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=7.2e-27 Score=250.87 Aligned_cols=290 Identities=18% Similarity=0.209 Sum_probs=186.6
Q ss_pred CChHHHHhhcccccCC---CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 123 KPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
.++++|.+||..+... ..+.++++++||||||++++ .++.++.......++|||+|+++|+.|+...|..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 5899999999877631 23689999999999998743 3444444334456999999999999999999988743222
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-----ccccCceEEEEEcCchhhh--------------
Q 011667 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-----KLGFSRLKILVYDEADHML-------------- 260 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~~~~~~~lViDEah~l~-------------- 260 (480)
......++...... ........|+|+|.++|...+... .+.+..+++||+||||+-.
T Consensus 492 ~~~~~i~~i~~L~~----~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 492 QTFASIYDIKGLED----KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cchhhhhchhhhhh----hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 11111111100000 011224689999999997765321 2456789999999999952
Q ss_pred -----------------hhheeeeccccHHHHHHHHHHhcccceeeecc----ccccc--------------cccE----
Q 011667 261 -----------------DEVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EELSL--------------ESVK---- 301 (480)
Q Consensus 261 -----------------~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~---- 301 (480)
.-.++||||+...... ++..|...+.-. ..... .++.
T Consensus 568 ~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFDAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhhhHHHHHHHHHhhcCccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 1278999998643222 222221110000 00000 0000
Q ss_pred -------E---EE--EEcCchh--------------HHHHHHHHHHHHhcc--cCCcEEEEeCchhhHHHHHHHHHhC--
Q 011667 302 -------Q---YK--VYCPDEL--------------AKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDF-- 351 (480)
Q Consensus 302 -------~---~~--~~~~~~~--------------~k~~~l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~~-- 351 (480)
. .. ...++.. .....+...+.+... ..+++||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 0 00 0000000 000111111222211 2379999999999999999887653
Q ss_pred ----C---CcEEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCccccccc
Q 011667 352 ----G---YEVTTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHR 423 (480)
Q Consensus 352 ----~---~~~~~l~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr 423 (480)
+ ..+..++|+.+ ++..++++|+++.. .|+|+++++.+|+|+|.+.+||.+.++ .|...|.||
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv--------kS~~lf~Qm 793 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV--------RSRILYEQM 793 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC--------CCHHHHHHH
Confidence 2 24567888875 46789999999887 689999999999999999999999999 899999999
Q ss_pred ccccccCC
Q 011667 424 IGRAGRFG 431 (480)
Q Consensus 424 ~GR~gR~g 431 (480)
+||+.|..
T Consensus 794 IGRgtR~~ 801 (1123)
T PRK11448 794 LGRATRLC 801 (1123)
T ss_pred HhhhccCC
Confidence 99999964
No 102
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.8e-26 Score=221.26 Aligned_cols=315 Identities=17% Similarity=0.235 Sum_probs=216.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+-+++.+.||||||.. +|-+-+.........+-+.-|.|..|..++..+.. ++..+|-.+.+.+......
T Consensus 372 ~vvvivgETGSGKTTQ--l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT------- 442 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQ--LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT------- 442 (1042)
T ss_pred cEEEEEecCCCCchhh--hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC-------
Confidence 8899999999999994 44443334433444445555999999998877654 5444454443333222211
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hheeeeccccHHHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTR 280 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~ 280 (480)
...+.|-++|.|.|++..-... .+.++++||+||||.-.- .+++.|||+...- +..
T Consensus 443 -~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k---f~n 517 (1042)
T KOG0924|consen 443 -SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK---FSN 517 (1042)
T ss_pred -CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH---HHH
Confidence 1246799999999987655433 578999999999997321 2889999987432 556
Q ss_pred HhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHH-HHhcccCCcEEEEeCchhhHHHHHHHHHh---------
Q 011667 281 IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI-FELGEKMGQTIIFVRTKNSASALHKALKD--------- 350 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~~~~~~~~~lVf~~s~~~~~~l~~~L~~--------- 350 (480)
|+.+...+.+....+++ ...+...+-+..--..+.+.+ .+.....+.+|||.+..+.++..+..+..
T Consensus 518 fFgn~p~f~IpGRTyPV---~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 518 FFGNCPQFTIPGRTYPV---EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred HhCCCceeeecCCccce---EEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 77766666665554433 333333332222212222211 12233568899999999877766655543
Q ss_pred -CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCC----------CCCCccc
Q 011667 351 -FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH----------LEPDCEV 419 (480)
Q Consensus 351 -~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~----------~~~s~~~ 419 (480)
.++.+.++++.|++.-+.++++.-..|..+++|||++++..|.+|++.+||+.+.-+...++ .+.|-..
T Consensus 595 ~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~An 674 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQAN 674 (1042)
T ss_pred CCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhcc
Confidence 16789999999999999999999889999999999999999999999999986654333221 1235555
Q ss_pred ccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHHcCC
Q 011667 420 YLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 479 (480)
Q Consensus 420 y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 479 (480)
--||.|||||.| +|.||.+|++. .....++..+++++- -+.-.+.-+|+..|+
T Consensus 675 A~QRaGRAGRt~-pG~cYRlYTe~------ay~~eml~stvPEIqRTNl~nvVLlLkslgV 728 (1042)
T KOG0924|consen 675 ADQRAGRAGRTG-PGTCYRLYTED------AYKNEMLPSTVPEIQRTNLSNVVLLLKSLGV 728 (1042)
T ss_pred chhhccccCCCC-Ccceeeehhhh------HHHhhcccCCCchhhhcchhhHHHHHHhcCh
Confidence 679999999986 99999999842 235667777777776 666677777776654
No 103
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=8.6e-26 Score=233.75 Aligned_cols=307 Identities=16% Similarity=0.209 Sum_probs=219.0
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.++|. +-++|++++-.+-+| .+|+++||||||||++...++...+.. +.++++.+|.++|..|.++.+......
T Consensus 115 ~~~F~-LD~fQ~~a~~~Ler~--esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPFE-LDPFQQEAIAILERG--ESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCCC-cCHHHHHHHHHHhCC--CcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 47887 889999999999999 999999999999999988888776655 446999999999999999988876553
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----------------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~---------------- 261 (480)
..-.+....|....+. ++.++|+|.+.|..++..+...+..+.+||+||+|.|.+
T Consensus 189 v~~~vGL~TGDv~IN~---------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 189 VADMVGLMTGDVSINP---------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhccceecceeeCC---------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 3111223333333332 468999999999999999888899999999999999877
Q ss_pred --hheeeeccccHHHH--HHHHHHhcccceeeeccccccccccEEEEEEcC------chhHH---------HHHHH----
Q 011667 262 --EVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP------DELAK---------VMVIR---- 318 (480)
Q Consensus 262 --~~~~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~k---------~~~l~---- 318 (480)
+++++|||.++..+ .++...-..+..+.. ....+..+.+++..-. ++..+ ...+.
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 38999999986543 334433333333322 2223333333322210 11010 00000
Q ss_pred -------------------------------HHHHHh-cccCCcEEEEeCchhhHHHHHHHHHhC---------------
Q 011667 319 -------------------------------DRIFEL-GEKMGQTIIFVRTKNSASALHKALKDF--------------- 351 (480)
Q Consensus 319 -------------------------------~~l~~~-~~~~~~~lVf~~s~~~~~~l~~~L~~~--------------- 351 (480)
+.+... ....-++|+|+-+++.|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 000000 013458999999999999988777531
Q ss_pred -------------CC-------------cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC
Q 011667 352 -------------GY-------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 405 (480)
Q Consensus 352 -------------~~-------------~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~ 405 (480)
++ .+..+|++|-+..+..+...|..|-++|+++|.+++.|+|.|.-++|+--=.
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 11 1458899999999999999999999999999999999999998777764222
Q ss_pred CCCCCCCCCCCcccccccccccccCCC--ceeEEEEee
Q 011667 406 PVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLM 441 (480)
Q Consensus 406 p~~~~~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~ 441 (480)
-+.|..+..-++.+|.|+.||+||.|. .|.++++-.
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 333444555689999999999999985 577776643
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.9e-25 Score=197.32 Aligned_cols=298 Identities=16% Similarity=0.197 Sum_probs=204.8
Q ss_pred CChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCc
Q 011667 123 KPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
+++|.|+.+-..+++. ...+.+++|-||+|||-+ +.+.++.... .|.++.+.+|....+..++.+++..+...++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 5889998777666543 237999999999999987 4444444333 3668999999999999999999988765555
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh------------------h
Q 011667 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------E 262 (480)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------~ 262 (480)
.++++...... ..+++|+|...|++.-+ .++++|+||+|-.-- .
T Consensus 174 --~~Lyg~S~~~f---------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 174 --DLLYGDSDSYF---------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred --eeEecCCchhc---------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 35555553322 15799999998888654 388999999997521 2
Q ss_pred heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHH------HHHHHHHHhcccCCcEEEEeC
Q 011667 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM------VIRDRIFELGEKMGQTIIFVR 336 (480)
Q Consensus 263 ~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~l~~~l~~~~~~~~~~lVf~~ 336 (480)
++++|||.++.+..-+...-. ..+.+..+....+-..-.+++..+-..++. .+...+......+.+++||++
T Consensus 236 ~IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 899999999877654433222 122222221111111222333333323321 234444455557789999999
Q ss_pred chhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCC
Q 011667 337 TKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 414 (480)
Q Consensus 337 s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~ 414 (480)
++..++.++..|+.. ...+...|+.. ..|.+..++|++|+..+||+|.+++||+.+|++++.|. +.- +..
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gae-----h~v 385 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-GAE-----HRV 385 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-cCC-----ccc
Confidence 999999999999543 34557788764 56888999999999999999999999999999998773 222 111
Q ss_pred CCcccccccccccccCC-C-ceeEEEEeeCCccHHHHHHH
Q 011667 415 PDCEVYLHRIGRAGRFG-R-KGVVFNLLMDGDDMIIMEKI 452 (480)
Q Consensus 415 ~s~~~y~qr~GR~gR~g-~-~g~~~~l~~~~~~~~~~~~i 452 (480)
-+.+..+|.+||+||.- . .|.++ |+...-...+.+..
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~-FFH~G~skaM~~A~ 424 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVL-FFHYGKSKAMKQAR 424 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEE-EEeccchHHHHHHH
Confidence 46777899999999954 2 46655 66555555554433
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=228.32 Aligned_cols=323 Identities=20% Similarity=0.220 Sum_probs=226.9
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhc--ccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISL--PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i--~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
.+++.+.+...+..|+...+.||..++ |.++.+ +++|..+||+.|||++..+.++..+... ...++.+.|....
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~--~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsi 281 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLER--KNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSI 281 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcc--cceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeeh
Confidence 567777777777789999999999887 678866 9999999999999999999998876543 3368999999988
Q ss_pred HHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc--CccccCceEEEEEcCchhhhh
Q 011667 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~ 261 (480)
++.-...+..+....|+.+.+..|...... ......+.|||-++-..+++. ..-.+..+++||+||.|.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEK------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCC------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 888888888999889988877663332211 112357999999987665543 223456799999999999876
Q ss_pred -----------------------hheeeeccccH--HHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHH--
Q 011667 262 -----------------------EVLLFSATFNE--TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV-- 314 (480)
Q Consensus 262 -----------------------~~~~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-- 314 (480)
|+++||||+++ .+..++..+......-.+...+....+ . .++..+...-+
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G--~-~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPG--S-LIYESSRNKVLRE 432 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCC--c-ccccchhhHHHHH
Confidence 27999999984 333333322211000001101110000 0 00000000000
Q ss_pred --------------HHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh------------------------------
Q 011667 315 --------------MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD------------------------------ 350 (480)
Q Consensus 315 --------------~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~------------------------------ 350 (480)
+.+..+..+....+.++||||++++.|+.++..+..
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 111111222233455799999999999998866543
Q ss_pred --------CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccc
Q 011667 351 --------FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 422 (480)
Q Consensus 351 --------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~q 422 (480)
....+..+|++++..+|..+...|++|...|++||+.++.|++.|..+++|- .|..+... .+.-+|.|
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir--aP~~g~~~--l~~~~YkQ 588 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR--APYVGREF--LTRLEYKQ 588 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe--CCccccch--hhhhhHHh
Confidence 1345789999999999999999999999999999999999999999888874 45444433 46778999
Q ss_pred cccccccCC--CceeEEEEeeCCcc
Q 011667 423 RIGRAGRFG--RKGVVFNLLMDGDD 445 (480)
Q Consensus 423 r~GR~gR~g--~~g~~~~l~~~~~~ 445 (480)
|+|||||+| ..|.+++++.+.+.
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccch
Confidence 999999998 46999999987654
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=1.7e-25 Score=235.85 Aligned_cols=317 Identities=18% Similarity=0.174 Sum_probs=205.6
Q ss_pred CChHHHHhhcccccC--CCCccEEEEccCCCccchHhHHHHhhccC-CCCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~~l~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
.++|+|..++..++. ..+.++|++..+|.|||+..+. ++..+. .......+|||||. .+..||.+++.+|+...
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l- 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVL- 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCC-
Confidence 578999999988752 1127899999999999997443 344332 22234478999997 57789999999997643
Q ss_pred ceeeEeecCCCCCccc-ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---------------h
Q 011667 200 ITSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---------------V 263 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~---------------~ 263 (480)
.+...++........ .........+|+|+|++.+..... .+.--.+++|||||||++.+. .
T Consensus 246 -~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~R 322 (1033)
T PLN03142 246 -RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYR 322 (1033)
T ss_pred -ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcE
Confidence 333333332111000 011122357899999999866432 222235789999999998763 6
Q ss_pred eeeecccc-HHHHHHHHHH-hcccc--------------------------------eeeecc--cc--ccccccEEEEE
Q 011667 264 LLFSATFN-ETVKNFVTRI-VKDYN--------------------------------QLFVKK--EE--LSLESVKQYKV 305 (480)
Q Consensus 264 ~~~SAT~~-~~~~~~~~~~-~~~~~--------------------------------~~~~~~--~~--~~~~~~~~~~~ 305 (480)
+++|+|+- +.+.++...+ +..|. .+...+ .. ..++......+
T Consensus 323 LLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv 402 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETIL 402 (1033)
T ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEE
Confidence 88899952 1111110000 00000 000000 00 00000111111
Q ss_pred EcC--------------------------------------------------------------chhHHHHHHHHHHHH
Q 011667 306 YCP--------------------------------------------------------------DELAKVMVIRDRIFE 323 (480)
Q Consensus 306 ~~~--------------------------------------------------------------~~~~k~~~l~~~l~~ 323 (480)
.+. ....|+..+..++..
T Consensus 403 ~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~ 482 (1033)
T PLN03142 403 KVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPK 482 (1033)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHH
Confidence 111 112344444444444
Q ss_pred hcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC---CCcEEEEccccccCCCCCCCCEE
Q 011667 324 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG---LTQVLISTDVLARGFDQQQVNLI 400 (480)
Q Consensus 324 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g---~~~iLv~T~~~~~Gldi~~v~~V 400 (480)
+...+.++|||+........|..+|...++.+..++|+++..+|..+++.|+.. ...+|++|.+++.|||+..+++|
T Consensus 483 Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~V 562 (1033)
T PLN03142 483 LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIV 562 (1033)
T ss_pred HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEE
Confidence 555678999999999999999999999999999999999999999999999753 23578999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCcee--EEEEeeCCc-cHHHHHHHH
Q 011667 401 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDGD-DMIIMEKIE 453 (480)
Q Consensus 401 i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~--~~~l~~~~~-~~~~~~~i~ 453 (480)
|+||++|+ +..+.|++||+.|.|+... ++.|++... +..++....
T Consensus 563 IiyD~dWN--------P~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~ 610 (1033)
T PLN03142 563 ILYDSDWN--------PQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 610 (1033)
T ss_pred EEeCCCCC--------hHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHH
Confidence 99999975 5669999999999998654 456666543 334444333
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=6e-25 Score=225.08 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=112.7
Q ss_pred chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 309 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
....|...+.+.+......+.++||||+|+..++.++..|...++++..+|+ .+.+|+..+..|..+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456888888877666667899999999999999999999999999999997 68899999999999999999999999
Q ss_pred ccCCCCC---CCC-----EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 389 ARGFDQQ---QVN-----LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 389 ~~Gldi~---~v~-----~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
+||+||+ +|. +||++..| .|...|.||+|||||.|.+|.++.|++..|+
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterh--------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERH--------ESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCC--------chHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999 454 44888888 7889999999999999999999999986553
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.8e-24 Score=213.51 Aligned_cols=274 Identities=22% Similarity=0.282 Sum_probs=190.2
Q ss_pred HHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 111 l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
+.+.+.+..|+ .|...|+--...++.| ++.-+.||||.|||.--++..+. +. .++.++++|+||..|+.|+++.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg--~SFaiiAPTGvGKTTfg~~~sl~-~a--~kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRG--KSFAIIAPTGVGKTTFGLLMSLY-LA--KKGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcC--CceEEEcCCCCchhHHHHHHHHH-HH--hcCCeEEEEecCHHHHHHHHHH
Confidence 34444454566 6999999888899999 99999999999999643332222 22 2357999999999999999999
Q ss_pred HHHHhcccC-ceeeEe-ecCCCCC--cccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----
Q 011667 191 LRKMGKHTG-ITSECA-VPTDSTN--YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----- 261 (480)
Q Consensus 191 ~~~~~~~~~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----- 261 (480)
+.+++...+ ..+..+ ++.-+.. .....+....+.+|+|+|.+.|...+.. +.--++++|++|.+|.++.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccH
Confidence 999987655 333332 2221111 1122334455789999999988776654 1113688999999998764
Q ss_pred -------------------------------------------------------hheeeeccccHHH-HHHHHHHhccc
Q 011667 262 -------------------------------------------------------EVLLFSATFNETV-KNFVTRIVKDY 285 (480)
Q Consensus 262 -------------------------------------------------------~~~~~SAT~~~~~-~~~~~~~~~~~ 285 (480)
++++.|||..+.- +..+-+-+.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl-- 300 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL-- 300 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh--
Confidence 1677788865322 222222221
Q ss_pred ceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCc---hhhHHHHHHHHHhCCCcEEEecCCC
Q 011667 286 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRT---KNSASALHKALKDFGYEVTTIMGAT 362 (480)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s---~~~~~~l~~~L~~~~~~~~~l~~~~ 362 (480)
.+.+......+.++...++.. ....+.. .++..+ +...|||++. ++.++.++++|...|+++..+|+.
T Consensus 301 -gFevG~~~~~LRNIvD~y~~~-~~~e~~~---elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~- 371 (1187)
T COG1110 301 -GFEVGSGGEGLRNIVDIYVES-ESLEKVV---ELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE- 371 (1187)
T ss_pred -CCccCccchhhhheeeeeccC-ccHHHHH---HHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-
Confidence 122333344455666665554 2223332 223332 3578999999 899999999999999999999984
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEccCCC
Q 011667 363 IQEERDKIVKEFKDGLTQVLIST----DVLARGFDQQQ-VNLIVNYDPPV 407 (480)
Q Consensus 363 ~~~~r~~~~~~f~~g~~~iLv~T----~~~~~Gldi~~-v~~Vi~~~~p~ 407 (480)
....++.|..|++++||+. +++.||||+|. ++++|.|+.|+
T Consensus 372 ----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 ----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3678999999999999876 67899999996 88999999993
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=6.9e-23 Score=219.21 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC--EE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN--LI 400 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~--~V 400 (480)
..+++||||+|.+..+.++..|.. .++.+ +..+.. ..|..+++.|++++..||+||+.+++|+|+|+.. +|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 457899999999999999999975 23333 333333 5788999999999999999999999999999865 67
Q ss_pred EEccCCCCCCCC----------------------CCCCcccccccccccccCCCceeEEEEeeCCc--cHHHHHHHHHHh
Q 011667 401 VNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD--DMIIMEKIERYF 456 (480)
Q Consensus 401 i~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~--~~~~~~~i~~~l 456 (480)
|...+|.....+ ++.....+.|.+||.-|...+..+++++ +.. ...+-+.+-+.+
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il-D~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL-DRRLVGKRYGKRFEKSL 828 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE-ccccccchHHHHHHHhC
Confidence 778888643221 0112234579999999987654455455 222 233444444444
Q ss_pred C
Q 011667 457 D 457 (480)
Q Consensus 457 ~ 457 (480)
.
T Consensus 829 p 829 (850)
T TIGR01407 829 P 829 (850)
T ss_pred C
Confidence 3
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=8.2e-24 Score=221.72 Aligned_cols=308 Identities=18% Similarity=0.229 Sum_probs=207.6
Q ss_pred CChHHHHhhcccccCCC-Cc-cEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 123 KPSKIQAISLPMILTPP-YR-NLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~-~~-~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
.+.+.|..++..++... .. .+++.||||+|||.+.+.+++..+.. .....+++++.|++.++.++++.++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 34889999998887752 23 78999999999999999998887765 34567999999999999999999998766544
Q ss_pred ceeeEeecCCCCCccccc------------CCCCCCCeEEEeChHHHHHHHhc-Cccc-c--CceEEEEEcCchhhhhh-
Q 011667 200 ITSECAVPTDSTNYVPIS------------KRPPVTAQVVIGTPGTIKKWMSA-KKLG-F--SRLKILVYDEADHMLDE- 262 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~I~v~Tp~~l~~~l~~-~~~~-~--~~~~~lViDEah~l~~~- 262 (480)
+.....++.......... ........+.++||-........ .... + -..+.+|+||+|.+-..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 432211221111110000 00001133455555444332111 1111 1 13468999999987542
Q ss_pred ------------------heeeeccccHHHHHHHHHHhcccceeeeccccccc---cccEEE-EEEcCchhHHHHHHHHH
Q 011667 263 ------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL---ESVKQY-KVYCPDELAKVMVIRDR 320 (480)
Q Consensus 263 ------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~k~~~l~~~ 320 (480)
++++|||+|+.....+...+.....+......... ..+.+. ........ . ..+...
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~-~~~~~~ 432 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-Q-EELIEL 432 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-h-Hhhhhc
Confidence 89999999999988888777655444433221100 011110 00000000 0 122222
Q ss_pred HHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH----hcCCCcEEEEccccccCCCCCC
Q 011667 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF----KDGLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 321 l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f----~~g~~~iLv~T~~~~~Gldi~~ 396 (480)
.....+..++++|.|||+..|..++..|+..+.++..+||.+...+|.+.++.+ +.+...|+|||++++.|+|+ +
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-d 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-D 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-c
Confidence 344455788999999999999999999999877899999999999998888754 45677899999999999999 5
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCC--CceeEEEEeeCC
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDG 443 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~ 443 (480)
.+++|.=-.| +.+.+||+||++|-| ..|.++++....
T Consensus 512 fd~mITe~aP----------idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLITELAP----------IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeeeecCCC----------HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9999866555 788999999999999 567777665533
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=1.5e-24 Score=188.76 Aligned_cols=148 Identities=31% Similarity=0.454 Sum_probs=120.4
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeE
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSEC 204 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 204 (480)
||+|.++++.+++| +++++.||||+|||++|++|+++.+... ...+++|++|+++|+.|+.+.+..++...++.+..
T Consensus 1 t~~Q~~~~~~i~~~--~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISG--KNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcC--CCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccc
Confidence 69999999999987 8999999999999999999999988776 55699999999999999999999998876677766
Q ss_pred eecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------------------hhe
Q 011667 205 AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------------EVL 264 (480)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------------~~~ 264 (480)
.+++...... .......+++|+|+||++|.+++......+.++++||+||+|.+.. +++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISED-QREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHH-HHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred cccccccccc-ccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 6655542211 1111123589999999999999998655777799999999999876 278
Q ss_pred eeeccccHHHHH
Q 011667 265 LFSATFNETVKN 276 (480)
Q Consensus 265 ~~SAT~~~~~~~ 276 (480)
++|||++..++.
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999998865543
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=1.4e-22 Score=207.83 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~ 389 (480)
...++..+...+......+.++||||++++.++.++..|...|+.+..+||++++.+|..++..|+.|++.|||||++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 34556666666776666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 390 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+|+|+|++++||+++.-..+.. .+..+|+||+|||||. ..|.+++|+...
T Consensus 504 rGfDiP~v~lVvi~DadifG~p---~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFL---RSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCC---CCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 9999999999999983222111 7889999999999997 689999887643
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=1.9e-23 Score=214.23 Aligned_cols=304 Identities=18% Similarity=0.223 Sum_probs=212.1
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceee
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSE 203 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~ 203 (480)
...+...+..+.+. +.+++.|.||+|||....-.+|.........+++++--|+|--|..+++++.. .+...|-.+.
T Consensus 175 ~~~r~~Il~~i~~~--qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 175 YKMRDTILDAIEEN--QVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHHHHhC--ceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 34455666666666 89999999999999976666777654444566767777999888888877653 4444554444
Q ss_pred EeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hhe
Q 011667 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVL 264 (480)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~ 264 (480)
+.+...+.. ...+.+.+||.|.|++.+.. ...+..+.+||+||+|.-.. +++
T Consensus 253 Yqvrl~~~~--------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 253 YQVRLESKR--------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred EEEeeeccc--------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 444333222 22367999999999999988 44588999999999997321 389
Q ss_pred eeeccccHHHHHHHHHHhcccceeeeccccccccc----------------cEEEE-----------EEcCchhHHHHHH
Q 011667 265 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES----------------VKQYK-----------VYCPDELAKVMVI 317 (480)
Q Consensus 265 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-----------~~~~~~~~k~~~l 317 (480)
+||||+..+ .++.++.....+.+......... ..+.. ..+-...-....+
T Consensus 324 LMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 324 LMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred EeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 999998843 36666666665555432221110 00010 0000011122222
Q ss_pred HHHHHHh--cccCCcEEEEeCchhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 318 RDRIFEL--GEKMGQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 318 ~~~l~~~--~~~~~~~lVf~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
..++... ....+.+|||.++..++..+++.|... .+-+.++|+.|+..++..++.....|..+|+++|+++
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 2222221 235789999999999999999999642 3568899999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCC----------CCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 389 ARGFDQQQVNLIVNYDPPVKHGKH----------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~~p~~~~~~----------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+.+|.|++|-+||+.+.-+...++ .+-|...-.||.|||||. ++|.||.+|+..
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 999999999999985544332221 123455568999999997 699999999854
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=6e-23 Score=194.21 Aligned_cols=131 Identities=24% Similarity=0.300 Sum_probs=117.7
Q ss_pred CchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 011667 308 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 387 (480)
Q Consensus 308 ~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~ 387 (480)
......+..|...+......+.++||-+-|++.|+.|.++|.+.|+++..+|++...-+|..++..++.|.++|||.-+.
T Consensus 426 Rp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINL 505 (663)
T COG0556 426 RPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (663)
T ss_pred ecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehh
Confidence 33445666666667776678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 388 ~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+-+|||+|.|.+|..+|..+.|.. +|..+.+|-+|||+| +..|++| +|.+.
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFL---Rse~SLIQtIGRAAR-N~~GkvI-lYAD~ 556 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFL---RSERSLIQTIGRAAR-NVNGKVI-LYADK 556 (663)
T ss_pred hhccCCCcceeEEEEeecCccccc---cccchHHHHHHHHhh-ccCCeEE-EEchh
Confidence 999999999999999999998888 899999999999999 4689999 55443
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2e-22 Score=201.28 Aligned_cols=306 Identities=17% Similarity=0.150 Sum_probs=220.0
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+....+|+. |+++|.-+.-.++.| -++.+.||+|||+++.+|++..... |..+.|++|+.-||.|-++++..
T Consensus 70 a~~R~lg~r-~ydvQlig~l~Ll~G----~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 70 AAERTLGLR-PFDVQLLGALRLLAG----DVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HHHHHcCCC-cchHHHHHHHHHhCC----CcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHH
Confidence 333445665 999999999888887 4789999999999999888765433 66799999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh----
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE---- 262 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~---- 262 (480)
+...+|+.+.++.+..... .++....++|+++|...| +++|..+ ....+.+.+.||||+|.++-.
T Consensus 142 ly~~LGLsvg~i~~~~~~~----err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 142 LYEALGLTVGWITEESTPE----ERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHhcCCEEEEECCCCCHH----HHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 9999999988876544322 122233589999999875 3333221 223456889999999987630
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------heeeeccccHHHH
Q 011667 263 -------------------------------------------------------------------VLLFSATFNETVK 275 (480)
Q Consensus 263 -------------------------------------------------------------------~~~~SAT~~~~~~ 275 (480)
+.+||.|......
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~ 377 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE 377 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH
Confidence 5677788766555
Q ss_pred HHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcE
Q 011667 276 NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEV 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~ 355 (480)
.+..-+-.+...+........... .-........|...+.+.+......+.|+||.|.|++.++.++..|.+.++++
T Consensus 378 Ef~~iY~l~Vv~IPtnkp~~R~d~---~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h 454 (764)
T PRK12326 378 QLRQFYDLGVSVIPPNKPNIREDE---ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPA 454 (764)
T ss_pred HHHHHhCCcEEECCCCCCceeecC---CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 433333322221211111111111 11122345677888887787777789999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCC---------------CCCEEEEccCCCCCCCCCCCCccc
Q 011667 356 TTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQ---------------QVNLIVNYDPPVKHGKHLEPDCEV 419 (480)
Q Consensus 356 ~~l~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~---------------~v~~Vi~~~~p~~~~~~~~~s~~~ 419 (480)
..+++.-...+-..+- ..|+. .|.|||++++||.||. +-=|||-...+ .|...
T Consensus 455 ~vLNAk~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerh--------eSrRI 523 (764)
T PRK12326 455 VVLNAKNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRH--------RSERL 523 (764)
T ss_pred eeeccCchHhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCC--------chHHH
Confidence 9999875443322222 24543 5899999999999987 33478877777 67777
Q ss_pred ccccccccccCCCceeEEEEeeCCcc
Q 011667 420 YLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 420 y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
-.|-.||+||.|.+|.+..|++-.|+
T Consensus 524 D~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 524 DNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHHHhcccccCCCCCceeEEEEcchh
Confidence 88999999999999999988886544
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=1.4e-21 Score=202.12 Aligned_cols=150 Identities=21% Similarity=0.216 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..++..+...+......+.++||||+++..++.++..|...|+++..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34455666666666667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC--------ccHHHHHHHHHHhCCccee
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG--------DDMIIMEKIERYFDIKVTE 462 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~--------~~~~~~~~i~~~l~~~~~~ 462 (480)
|+|+|++++||+++.+..+.- .+..+|+||+||+||. ..|.|++|+... ++....+.++..++.....
T Consensus 509 Gfdlp~v~lVii~d~eifG~~---~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 584 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFL---RSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGI 584 (652)
T ss_pred CccccCCcEEEEeCCcccccC---CCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999987543322 6889999999999996 799999888742 3566777888899888888
Q ss_pred cC
Q 011667 463 VR 464 (480)
Q Consensus 463 ~~ 464 (480)
+|
T Consensus 585 ~~ 586 (652)
T PRK05298 585 TP 586 (652)
T ss_pred CC
Confidence 87
No 117
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.89 E-value=1.2e-22 Score=199.10 Aligned_cols=314 Identities=20% Similarity=0.194 Sum_probs=212.2
Q ss_pred CChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhcccC
Q 011667 123 KPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (480)
.++++|.+.++.+.+- ++-++|+...+|.|||+. .+.++.++.. ....+..||+||...| ..|..++++|++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~-- 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPS-- 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCC--
Confidence 5889999988877531 227899999999999997 5556666543 2234578999999877 4688999999875
Q ss_pred ceeeEeecCCCCCcccc-cCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---------------h
Q 011667 200 ITSECAVPTDSTNYVPI-SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---------------V 263 (480)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~---------------~ 263 (480)
+.+.+.+|......... ........+|+|+|++....- ...+.--.++++||||||++.++ .
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nr 320 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNR 320 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccce
Confidence 44445555542221111 112233689999999987653 22333346899999999998763 4
Q ss_pred eeeecccc------------------------------------------------------------------------
Q 011667 264 LLFSATFN------------------------------------------------------------------------ 271 (480)
Q Consensus 264 ~~~SAT~~------------------------------------------------------------------------ 271 (480)
++++.|+-
T Consensus 321 LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 321 LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeE
Confidence 45555510
Q ss_pred -------------------------------HHHHHHHHH---HhcccceeeeccccccccccEEEEEEcCchhHHHHHH
Q 011667 272 -------------------------------ETVKNFVTR---IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 317 (480)
Q Consensus 272 -------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 317 (480)
..+.+.+.. .+..|..+.. .....+.....+. .....|+..|
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg~pyttdehL---v~nSGKm~vL 476 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPGPPYTTDEHL---VTNSGKMLVL 476 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCCCCCCcchHH---HhcCcceehH
Confidence 000000000 0000000000 0000000000000 1234667777
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCC---CcEEEEccccccCCCC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL---TQVLISTDVLARGFDQ 394 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~---~~iLv~T~~~~~Gldi 394 (480)
-+++..+.+.+++||||.+.-...+.+..++.-+++..+.+.|.++.++|...++.|+... .-+|++|.+.+-|||+
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 7777788888999999999999999999999999999999999999999999999998654 3368999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc--eeEEEEeeCCc-cHHHHHHHHH
Q 011667 395 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK--GVVFNLLMDGD-DMIIMEKIER 454 (480)
Q Consensus 395 ~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~--g~~~~l~~~~~-~~~~~~~i~~ 454 (480)
..+++||.||..|+| ..-+|..-|+.|.|+. =.++.|+++.. +..++.+-..
T Consensus 557 ~aADtVIlyDSDWNP--------Q~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 557 TAADTVILYDSDWNP--------QVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred ccccEEEEecCCCCc--------hhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 999999999999875 4467899999999875 45677887653 3334444333
No 118
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.2e-22 Score=186.76 Aligned_cols=321 Identities=17% Similarity=0.187 Sum_probs=211.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEE
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~l 175 (480)
.+.+..|...+.++.-.+.+.+ ...-|---|+..+-.++.. ++.+++.|.||||||...--+.+....... ..+.
T Consensus 21 ~k~~Npf~~~p~s~rY~~ilk~--R~~LPvw~~k~~F~~~l~~-nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~ 95 (699)
T KOG0925|consen 21 AKAINPFNGKPYSQRYYDILKK--RRELPVWEQKEEFLKLLLN-NQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVA 95 (699)
T ss_pred hhhcCCCCCCcCcHHHHHHHHH--HhcCchHHhHHHHHHHHhc-CceEEEEecCCCCccccCcHHHHHHHHhhc--ccee
Confidence 3447889999999999988875 4455666677766666654 389999999999999854444444433322 3466
Q ss_pred EEecCHHHHHHHHHHHHHHh-cccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEc
Q 011667 176 CICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 254 (480)
..-|.|..|.+++.+...-. ..+|-.+.+.+.. ..-....+-+-+||.+.|++...++. .+.++++||+|
T Consensus 96 CTQprrvaamsva~RVadEMDv~lG~EVGysIrf--------EdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLD 166 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRF--------EDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILD 166 (699)
T ss_pred ecCchHHHHHHHHHHHHHHhccccchhccccccc--------cccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEec
Confidence 66699999999887665422 1122111111111 11111123356788888877766644 48899999999
Q ss_pred Cchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHH
Q 011667 255 EADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 315 (480)
Q Consensus 255 Eah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 315 (480)
|||.-.- .++++|||+...- +..++.++..+.+.. .. .+..+|...+ +...++
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~K---fq~yf~n~Pll~vpg-~~---PvEi~Yt~e~-erDylE 238 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEK---FQRYFGNAPLLAVPG-TH---PVEIFYTPEP-ERDYLE 238 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHH---HHHHhCCCCeeecCC-CC---ceEEEecCCC-ChhHHH
Confidence 9997321 2899999976443 567788777776654 11 2222333222 222333
Q ss_pred HHHHHHH--HhcccCCcEEEEeCchhhHHHHHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHh---cC--CC
Q 011667 316 VIRDRIF--ELGEKMGQTIIFVRTKNSASALHKALKDF---------GYEVTTIMGATIQEERDKIVKEFK---DG--LT 379 (480)
Q Consensus 316 ~l~~~l~--~~~~~~~~~lVf~~s~~~~~~l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~---~g--~~ 379 (480)
.....+. +..+..|.+|||.++.++++..++.+... .+.|.++| +.++..+++... +| ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 3222232 33456889999999999999999888642 45788888 444444544332 12 35
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCCCCCC----------CCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH----------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 380 ~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~----------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+|+|+|++++..+.++++.+||+-+.-+...++ .+.|..+-.||.||+||. ++|+|+.+|++.
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 799999999999999999999987666554443 134666778999999996 799999999853
No 119
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.7e-21 Score=188.34 Aligned_cols=317 Identities=17% Similarity=0.215 Sum_probs=210.9
Q ss_pred CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCC-CCCCeEEEEecCH
Q 011667 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCICPTR 181 (480)
Q Consensus 105 ~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-~~~~~~lil~Pt~ 181 (480)
+.+|..+... +.++|+..+..+..= ++...|+...+|.|||.. .+..|..+... .--..+|||||..
T Consensus 196 ~~vPg~I~~~---------Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~~paLIVCP~T 265 (923)
T KOG0387|consen 196 FKVPGFIWSK---------LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLTKPALIVCPAT 265 (923)
T ss_pred ccccHHHHHH---------hhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccccCceEEEccHH
Confidence 5566655544 458999988776531 125689999999999986 33344444332 2335799999985
Q ss_pred HHHHHHHHHHHHHhcccCceeeEeecCCCCCccc-----------ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEE
Q 011667 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP-----------ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (480)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 250 (480)
++.||..++..|+....+ ...++..+..... .......+..|+|+|+..|.- ....+.-..|++
T Consensus 266 -ii~qW~~E~~~w~p~~rv--~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y 340 (923)
T KOG0387|consen 266 -IIHQWMKEFQTWWPPFRV--FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDY 340 (923)
T ss_pred -HHHHHHHHHHHhCcceEE--EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccE
Confidence 788999999999876544 4455444321111 111222346799999988743 222344456899
Q ss_pred EEEcCchhhhhh---------------heeeecccc-HHHHH--------------------------------------
Q 011667 251 LVYDEADHMLDE---------------VLLFSATFN-ETVKN-------------------------------------- 276 (480)
Q Consensus 251 lViDEah~l~~~---------------~~~~SAT~~-~~~~~-------------------------------------- 276 (480)
+|+||.|++-+. .+++|.|+- +.+.+
T Consensus 341 ~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~ 420 (923)
T KOG0387|consen 341 VILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPR 420 (923)
T ss_pred EEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHH
Confidence 999999998762 677788731 11111
Q ss_pred --------------HHHHHhc-----------cc----ceeeec-----------------------cccccccccE---
Q 011667 277 --------------FVTRIVK-----------DY----NQLFVK-----------------------KEELSLESVK--- 301 (480)
Q Consensus 277 --------------~~~~~~~-----------~~----~~~~~~-----------------------~~~~~~~~~~--- 301 (480)
++..++. -| .+++.. .....+.++.
T Consensus 421 qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLr 500 (923)
T KOG0387|consen 421 QVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILR 500 (923)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHH
Confidence 0110000 00 000000 0000000000
Q ss_pred ----E--EEE-------------EcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHH-hCCCcEEEecCC
Q 011667 302 ----Q--YKV-------------YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK-DFGYEVTTIMGA 361 (480)
Q Consensus 302 ----~--~~~-------------~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~l~~~ 361 (480)
| .+. -.+....|+..+..++......+.++|+|..++.....+...|. ..++.+..+.|.
T Consensus 501 kICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGt 580 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGT 580 (923)
T ss_pred hhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 0 000 11123566777777666666778899999999999999999998 579999999999
Q ss_pred CCHHHHHHHHHHHhcCCCc--EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCce--eEE
Q 011667 362 TIQEERDKIVKEFKDGLTQ--VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVF 437 (480)
Q Consensus 362 ~~~~~r~~~~~~f~~g~~~--iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g--~~~ 437 (480)
.+...|..++++|+++..- +|++|.+.+-|+++.+++-||.||+.|+| +.-.|..-|+.|.|++- .+|
T Consensus 581 T~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNP--------StD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 581 TPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNP--------STDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred CccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCC--------ccchHHHHHHHhhcCccceEEE
Confidence 9999999999999987653 58899999999999999999999999864 55679999999999754 456
Q ss_pred EEeeCCc
Q 011667 438 NLLMDGD 444 (480)
Q Consensus 438 ~l~~~~~ 444 (480)
.|++...
T Consensus 653 RL~t~gT 659 (923)
T KOG0387|consen 653 RLMTAGT 659 (923)
T ss_pred EEecCCc
Confidence 6777553
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3.2e-21 Score=197.30 Aligned_cols=301 Identities=19% Similarity=0.152 Sum_probs=206.3
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+|. .|+++|.-.--.+..| -|..+.||+|||+++.+|++..... |..+-|++|+.-||.|-++++..+...+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G----~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG----KIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCC-CcchhHHHhhhHhccC----ccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 564 4888888665555555 6899999999999999998755433 5679999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcCc------cccCceEEEEEcCchhhhhh---------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDE--------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~~~--------- 262 (480)
|+.+.++.+...... ++....++|+++|..-| +++|..+. .....+.++||||+|.++-.
T Consensus 151 Gl~v~~i~~~~~~~e----rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 151 GLSVGIVTPFQPPEE----KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred CCEEEEECCCCCHHH----HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 999988765443221 12222489999999886 44444321 12378899999999987531
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence
Q ss_pred heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHH
Q 011667 263 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSAS 342 (480)
Q Consensus 263 ~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~ 342 (480)
+.+||.|.......+..-+-.+...|....... .....-........|+..+.+.+......+.|+||-+.|++.++
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~---R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLA---RKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCCEEECCCCCCcc---cccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 222333322222221111111111111000000 01111112234567888888878888888999999999999999
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCC--------------------------
Q 011667 343 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQ-------------------------- 395 (480)
Q Consensus 343 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~-------------------------- 395 (480)
.++.+|...++++-.++......+-..+- ..|+. .|.|||++++||-||.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999988888765443333333 34543 5899999999999994
Q ss_pred -----------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 396 -----------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 396 -----------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
+-=|||--..+ .|..-=.|-.||+||.|.+|.+..|++-.|+
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerh--------eSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERH--------ESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccC--------chHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 23366666566 6677778999999999999999988886554
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.3e-21 Score=195.89 Aligned_cols=307 Identities=21% Similarity=0.277 Sum_probs=203.4
Q ss_pred CChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCc
Q 011667 123 KPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
.+++-|..++..+... .....++.+.||||||-+|+-.+-..+.. |.++|||+|-.+|..|+...++..+. .
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rFg---~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARFG---A 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHhC---C
Confidence 4567788888777654 24678999999999999998877777765 56899999999999999999988765 2
Q ss_pred eeeEeecCCCC-Cccccc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------
Q 011667 201 TSECAVPTDST-NYVPIS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261 (480)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------------- 261 (480)
.+...+.+-+. .....| +.......|+|||-..+ ...|.++++|||||=|.-.=
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 33333333322 222233 34446789999998776 33688999999999996321
Q ss_pred ------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHH-----HHHHHHHHHhcccCCc
Q 011667 262 ------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV-----MVIRDRIFELGEKMGQ 330 (480)
Q Consensus 262 ------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~ 330 (480)
.+++-|||.. ++.+.......+..+...............++.+..+.... ..+.+.+.+..+.+.+
T Consensus 345 a~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ 422 (730)
T COG1198 345 AKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQ 422 (730)
T ss_pred HHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCe
Confidence 2889999966 33333332333344443333222222222333333222222 4455557777778889
Q ss_pred EEEEeCchhh------------------------------------------------------------HHHHHHHHHh
Q 011667 331 TIIFVRTKNS------------------------------------------------------------ASALHKALKD 350 (480)
Q Consensus 331 ~lVf~~s~~~------------------------------------------------------------~~~l~~~L~~ 350 (480)
+|+|+|.+.. ++++.+.|..
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 9999987663 3444444433
Q ss_pred C--CCcEEEecCCCCH--HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCC--CC--CCCcccccc
Q 011667 351 F--GYEVTTIMGATIQ--EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK--HL--EPDCEVYLH 422 (480)
Q Consensus 351 ~--~~~~~~l~~~~~~--~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~--~~--~~s~~~y~q 422 (480)
. +..+..+.++... ..-...+..|.+|+.+|||.|.+++.|.|+|+++.|...|....-.. .+ .+....+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 3 4456666666544 33567899999999999999999999999999999887554422111 00 012344578
Q ss_pred cccccccCCCceeEEEEeeCCc
Q 011667 423 RIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 423 r~GR~gR~g~~g~~~~l~~~~~ 444 (480)
-.||+||.+.+|.+++-....+
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCC
Confidence 8999999999999886555554
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=3.2e-21 Score=192.33 Aligned_cols=286 Identities=17% Similarity=0.230 Sum_probs=187.9
Q ss_pred CCChHHHHhhccccc----CCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 122 QKPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
..|+.+|..||..+. .|. +.+++++.||+|||.. .+.++.+|.+.....++|+|+-+++|+.|.+..+..+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~-~raLlvMATGTGKTrT-Aiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQ-NRALLVMATGTGKTRT-AIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCC-ceEEEEEecCCCccee-HHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 368999999987654 453 5699999999999998 5567777776667789999999999999999888887654
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-----ccccCceEEEEEcCchhhhh-----------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-----KLGFSRLKILVYDEADHMLD----------- 261 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~~~~~~~lViDEah~l~~----------- 261 (480)
.... ..+.+.... ..++|.++|++++...+... .+....+++||+||||+-.-
T Consensus 242 ~~~~-n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFd 310 (875)
T COG4096 242 GTKM-NKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFD 310 (875)
T ss_pred ccce-eeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHH
Confidence 3221 111111111 13789999999998887654 23445699999999998432
Q ss_pred -hheeeeccccHHHHHHHHHHh-cccc------------------eeeecc----cccccccc-------------EEEE
Q 011667 262 -EVLLFSATFNETVKNFVTRIV-KDYN------------------QLFVKK----EELSLESV-------------KQYK 304 (480)
Q Consensus 262 -~~~~~SAT~~~~~~~~~~~~~-~~~~------------------~~~~~~----~~~~~~~~-------------~~~~ 304 (480)
-+++++||+...+...-..++ ..|. .+.+.. ....+... ....
T Consensus 311 A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~ 390 (875)
T COG4096 311 AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQN 390 (875)
T ss_pred HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccc
Confidence 266779998765443333344 2222 111110 00000000 0000
Q ss_pred EEcCch------hHHHHHHHHHHHHhccc------CCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHH
Q 011667 305 VYCPDE------LAKVMVIRDRIFELGEK------MGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEER 367 (480)
Q Consensus 305 ~~~~~~------~~k~~~l~~~l~~~~~~------~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r 367 (480)
....+- ......+...+.+.+.. .+++||||.+..+|+.+...|... +--+..+.|.-.+ -
T Consensus 391 ~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~ 468 (875)
T COG4096 391 FEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--A 468 (875)
T ss_pred ccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--h
Confidence 000000 01111222222333222 579999999999999999999765 3446677776543 3
Q ss_pred HHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccC
Q 011667 368 DKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 430 (480)
Q Consensus 368 ~~~~~~f~~--g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~ 430 (480)
...++.|.. .-..|.|+.+++.+|+|+|.|-.+|.+..- .|...|-||+||.-|.
T Consensus 469 q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V--------rSktkF~QMvGRGTRl 525 (875)
T COG4096 469 QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKV--------RSKTKFKQMVGRGTRL 525 (875)
T ss_pred HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhh--------hhHHHHHHHhcCcccc
Confidence 344555654 334688999999999999999999988777 8999999999999994
No 123
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=7.9e-21 Score=197.31 Aligned_cols=288 Identities=18% Similarity=0.222 Sum_probs=169.6
Q ss_pred ChHHHHhhcccccCC--------CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 124 PSKIQAISLPMILTP--------PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 124 p~~~Q~~~i~~il~~--------~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
|+++|..|+..++.. ..+..+++++||||||++.+..+...+ .....+++|||+|+.+|..|+.+.+..++
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 788899888776432 136799999999999998555443333 33456799999999999999999999886
Q ss_pred cccCceeeEeecCCCCCcccccC-CCCCCCeEEEeChHHHHHHHhcC--ccccCc-eEEEEEcCchhhhh----------
Q 011667 196 KHTGITSECAVPTDSTNYVPISK-RPPVTAQVVIGTPGTIKKWMSAK--KLGFSR-LKILVYDEADHMLD---------- 261 (480)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~-~~~lViDEah~l~~---------- 261 (480)
.... ....+. ..... .......|+|+|.++|...+... .+...+ --+||+||||+...
T Consensus 318 ~~~~------~~~~s~--~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~~ 389 (667)
T TIGR00348 318 KDCA------ERIESI--AELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKKA 389 (667)
T ss_pred CCCC------cccCCH--HHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHhh
Confidence 4210 000100 00000 11123579999999998644321 111111 12899999998532
Q ss_pred ----hheeeeccccHHHHHHHHHHh----cccceeeecc----ccccccccEEEEEE----cCc----------------
Q 011667 262 ----EVLLFSATFNETVKNFVTRIV----KDYNQLFVKK----EELSLESVKQYKVY----CPD---------------- 309 (480)
Q Consensus 262 ----~~~~~SAT~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~----~~~---------------- 309 (480)
..++||||+-..........+ ..+...+... .....+ +...... ...
T Consensus 390 ~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~-i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 390 LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK-IDYEDRLPEDHLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee-EEEEecchhhccChHHHHHHHHHHHHhhhc
Confidence 288999997421100000111 1111111000 000000 0000000 000
Q ss_pred ---hh-------------------HHHHHHHHHHHHh----cc-cCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEE
Q 011667 310 ---EL-------------------AKVMVIRDRIFEL----GE-KMGQTIIFVRTKNSASALHKALKDF-----GYEVTT 357 (480)
Q Consensus 310 ---~~-------------------~k~~~l~~~l~~~----~~-~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~ 357 (480)
.. ..+..+...+.+. .. ..++++|||.++..|..+++.|.+. +.....
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 00 0001111111111 11 2489999999999999999998664 234556
Q ss_pred ecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCC
Q 011667 358 IMGATIQE---------------------ERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP 415 (480)
Q Consensus 358 l~~~~~~~---------------------~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~ 415 (480)
+++..... ....++++|++ +..+|||+++++.+|+|.|.+++++.. .|. .
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld-Kpl-------k 620 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD-KPL-------K 620 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe-ccc-------c
Confidence 66543322 22468889976 678999999999999999999999955 452 3
Q ss_pred CcccccccccccccC
Q 011667 416 DCEVYLHRIGRAGRF 430 (480)
Q Consensus 416 s~~~y~qr~GR~gR~ 430 (480)
+ ..++|.+||+.|.
T Consensus 621 ~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 Y-HGLLQAIARTNRI 634 (667)
T ss_pred c-cHHHHHHHHhccc
Confidence 3 3489999999993
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.2e-20 Score=186.57 Aligned_cols=306 Identities=16% Similarity=0.151 Sum_probs=215.0
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+....+|.. |+++|.-.--.+..| -|..+.||-|||+++.+|++-... .|..|-|++...-||..=++++..
T Consensus 70 A~~R~lG~r-~ydVQliGglvLh~G----~IAEMkTGEGKTLvAtLpayLnAL---~GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 70 ATKRVLGKR-PYDVQIIGGIILDLG----SVAEMKTGEGKTITSIAPVYLNAL---TGKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred HHHHHhCCC-cCchHHHHHHHHhcC----CeeeecCCCCccHHHHHHHHHHHh---cCCceEEEecchhhhhhhHHHHHH
Confidence 333335664 889998776666665 589999999999999998853322 255688999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh----
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE---- 262 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~---- 262 (480)
+...+|+.+.+...+... ..++....++|.++|...| +++|..+ ....+.+.+.||||+|.++-.
T Consensus 142 vy~fLGLsvG~i~~~~~~----~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 142 VFNFLGLSVGINKANMDP----NLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHhCCceeeeCCCCCh----HHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 999999998877654322 2223334589999999876 4444432 123467889999999987530
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------------heeeeccccHHHHH
Q 011667 263 ------------------------------------------------------------------VLLFSATFNETVKN 276 (480)
Q Consensus 263 ------------------------------------------------------------------~~~~SAT~~~~~~~ 276 (480)
+.+||.|......+
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~E 377 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQE 377 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHH
Confidence 56777777655555
Q ss_pred HHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEE
Q 011667 277 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 356 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~ 356 (480)
+..-+-.....+........ ....-........|+..+...+......+.|+||.|.|++.++.++..|.+.|++..
T Consensus 378 f~~iY~l~Vv~IPTnkP~~R---~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~ 454 (925)
T PRK12903 378 FIDIYNMRVNVVPTNKPVIR---KDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHT 454 (925)
T ss_pred HHHHhCCCEEECCCCCCeee---eeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCce
Confidence 44333322222222111111 111111122455677777777777777889999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCCCC--------EEEEccCCCCCCCCCCCCccccccccccc
Q 011667 357 TIMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQQVN--------LIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427 (480)
Q Consensus 357 ~l~~~~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~~v~--------~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~ 427 (480)
.+++.-.. ++..+-. ..|+ -.|.|||++++||.||.--. |||....| .|..---|..||+
T Consensus 455 vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerh--------eSrRIDnQLrGRa 523 (925)
T PRK12903 455 VLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKA--------ESRRIDNQLRGRS 523 (925)
T ss_pred eecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccC--------chHHHHHHHhccc
Confidence 99886443 3332222 4564 35899999999999997332 88888777 6677778999999
Q ss_pred ccCCCceeEEEEeeCCcc
Q 011667 428 GRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 428 gR~g~~g~~~~l~~~~~~ 445 (480)
||.|.+|.+..|++-.|+
T Consensus 524 GRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 524 GRQGDVGESRFFISLDDQ 541 (925)
T ss_pred ccCCCCCcceEEEecchH
Confidence 999999999988886544
No 125
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=3.1e-19 Score=188.52 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=98.1
Q ss_pred HHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 011667 316 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 395 (480)
Q Consensus 316 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 395 (480)
.+.+.+.......+++||+++|.+..+.++..|......+ ...|... .+..++++|+++...||++|+.+.+|+|+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p 711 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFV 711 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCC
Confidence 3444444444467899999999999999999997655544 3333221 256689999998889999999999999997
Q ss_pred C--CCEEEEccCCCCCCCC----------------------CCCCcccccccccccccCCCceeEEEEeeCC-ccHHHHH
Q 011667 396 Q--VNLIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG-DDMIIME 450 (480)
Q Consensus 396 ~--v~~Vi~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~ 450 (480)
+ ...||...+|....++ ++.-...+.|.+||.-|...+-.+++++... ....+.+
T Consensus 712 ~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~ 791 (820)
T PRK07246 712 QADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGK 791 (820)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHH
Confidence 3 5667777878553321 0111233478899999976543344454221 1223445
Q ss_pred HHHHHhCCcceecCCCHHHHHHHHH
Q 011667 451 KIERYFDIKVTEVRNSDEDFKAALK 475 (480)
Q Consensus 451 ~i~~~l~~~~~~~~~~~~~~~~~~~ 475 (480)
.+-+-+...+.-...+..++...++
T Consensus 792 ~~l~sLP~~~~~~~~~~~~~~~~~~ 816 (820)
T PRK07246 792 QILASLAEEFLISQQNFSDVLVEID 816 (820)
T ss_pred HHHHhCCCCCccccCCHHHHHHHHH
Confidence 5555554322222235555554443
No 126
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=5.5e-19 Score=180.26 Aligned_cols=264 Identities=16% Similarity=0.177 Sum_probs=181.8
Q ss_pred HHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHh-hccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 113 ~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
++....+|+. |+++|.-+.-.+..| -|+.+.||.|||+++.+|++ +.+ .|..|-|++++..||.+-++++
T Consensus 67 Ea~~R~lG~r-~ydvQlig~l~L~~G----~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 67 EASFRTLGLR-HFDVQLIGGLVLNDG----KIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred HHHHHHhCCC-CCchHhhhhHhhcCC----ccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHHHHHHH
Confidence 3344446776 889998776555444 79999999999999999985 333 3557999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh--
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE-- 262 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~-- 262 (480)
..+...+|+.+.+..++... ..++....++|+++|...| .++|..+ ....+.+.+.||||||.++-.
T Consensus 138 ~pvy~~LGLsvg~i~~~~~~----~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 138 GQIYRFLGLTVGLIQEGMSS----EERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHHHHHcCCceeeeCCCCCh----HHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 99999999998877554332 2233334589999999755 2333321 123467889999999987530
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------heeeeccccHHH
Q 011667 263 --------------------------------------------------------------------VLLFSATFNETV 274 (480)
Q Consensus 263 --------------------------------------------------------------------~~~~SAT~~~~~ 274 (480)
+.+||.|.....
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~ 373 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEE 373 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHH
Confidence 567788876554
Q ss_pred HHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc
Q 011667 275 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 354 (480)
..+..-+-.+...+........ ....-........|...+.+.+......+.|+||-|.|++..+.++..|...|++
T Consensus 374 ~Ef~~iY~l~vv~IPtnkp~~R---~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~ 450 (870)
T CHL00122 374 LEFEKIYNLEVVCIPTHRPMLR---KDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLP 450 (870)
T ss_pred HHHHHHhCCCEEECCCCCCccc---eeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 4433333222222221111111 1111122234556777777777777778999999999999999999999999999
Q ss_pred EEEecCCCC--HHHHHHHHHHHhcCCC-cEEEEccccccCCCCC
Q 011667 355 VTTIMGATI--QEERDKIVKEFKDGLT-QVLISTDVLARGFDQQ 395 (480)
Q Consensus 355 ~~~l~~~~~--~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~ 395 (480)
+..+++.-. ..+-. ++.. .|+. .|.|||++++||.||.
T Consensus 451 h~vLNAk~~~~~~EA~-IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 451 HQLLNAKPENVRRESE-IVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred cceeeCCCccchhHHH-HHHh--cCCCCcEEEeccccCCCcCee
Confidence 999998642 23333 3322 4543 5899999999999975
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=7.1e-20 Score=171.77 Aligned_cols=327 Identities=18% Similarity=0.191 Sum_probs=204.2
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccC-CCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT-PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~-~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
..+|..-.+.|.+---|+ .-..++|+|..++..++. |..+..+++.|+|+|||++-+.++ ..+ ..++|||
T Consensus 281 EYDFRND~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti-----kK~clvL 351 (776)
T KOG1123|consen 281 EYDFRNDNVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI-----KKSCLVL 351 (776)
T ss_pred hhccccCCCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee-----cccEEEE
Confidence 344554444444433332 345789999999988874 456789999999999998743333 222 3379999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc--------CccccCceE
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--------KKLGFSRLK 249 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~ 249 (480)
|.+-.-+.||..++..|..-..-.+....... ......++.|+|+|+..+..--++ .-+.-..|+
T Consensus 352 cts~VSVeQWkqQfk~wsti~d~~i~rFTsd~-------Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWG 424 (776)
T KOG1123|consen 352 CTSAVSVEQWKQQFKQWSTIQDDQICRFTSDA-------KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWG 424 (776)
T ss_pred ecCccCHHHHHHHHHhhcccCccceEEeeccc-------cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeee
Confidence 99999999999999998754333332222221 122334678999999776321111 011235689
Q ss_pred EEEEcCchhhhhh-------------heeeeccccHHHHHHH-HHHhcccceeeecccccc----ccccEEEEEEc----
Q 011667 250 ILVYDEADHMLDE-------------VLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELS----LESVKQYKVYC---- 307 (480)
Q Consensus 250 ~lViDEah~l~~~-------------~~~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---- 307 (480)
++++||+|.+... .++++||+-.+-.... -.|+..|......--+.. ...+...-++|
T Consensus 425 llllDEVHvvPA~MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~ 504 (776)
T KOG1123|consen 425 LLLLDEVHVVPAKMFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTP 504 (776)
T ss_pred eEEeehhccchHHHHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCH
Confidence 9999999976542 6889999742211100 011111111000000000 00111111122
Q ss_pred ---------------------CchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHH
Q 011667 308 ---------------------PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 366 (480)
Q Consensus 308 ---------------------~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~ 366 (480)
+........|.+ .....+.++|||..+.-....++-.|.+ -.++|..+|.+
T Consensus 505 eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~---~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~E 576 (776)
T KOG1123|consen 505 EFYREYLRENTRKRMLLYVMNPNKFRACQFLIK---FHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNE 576 (776)
T ss_pred HHHHHHHhhhhhhhheeeecCcchhHHHHHHHH---HHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhH
Confidence 222222333333 2223678999999988888777777644 47899999999
Q ss_pred HHHHHHHHh-cCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC------ceeEEEE
Q 011667 367 RDKIVKEFK-DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR------KGVVFNL 439 (480)
Q Consensus 367 r~~~~~~f~-~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~------~g~~~~l 439 (480)
|.++++.|+ +..++-++.+-++...+|+|.++++|+...-. .|-.+-.||.||.-|+.+ ..-.++|
T Consensus 577 Rm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~-------GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 577 RMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG-------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred HHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc-------cchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 999999998 56788899999999999999999999987664 567778999999999753 1234566
Q ss_pred eeCCc-cHHHHHHHHHHh
Q 011667 440 LMDGD-DMIIMEKIERYF 456 (480)
Q Consensus 440 ~~~~~-~~~~~~~i~~~l 456 (480)
++... ++.+-..=.+||
T Consensus 650 VS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 650 VSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred eecchHHHHhhhhhhhhh
Confidence 66432 344434444444
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.84 E-value=1.5e-20 Score=193.00 Aligned_cols=320 Identities=18% Similarity=0.175 Sum_probs=207.3
Q ss_pred CCChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCC-CCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 122 QKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~-~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.+++.+|-..++.++.. .++++|++..+|.|||+. .+..|..+.... -.+..|||+|...+ ..|.+.+..|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---
Confidence 57899999999887643 238999999999999986 333444432211 23468999998754 56788888887
Q ss_pred CceeeEeecCCCCCcc----cccC---CCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---------
Q 011667 199 GITSECAVPTDSTNYV----PISK---RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE--------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~--------- 262 (480)
..++.+.+|....... .... ...-..+++++|++.++.-.. .+.--.+.++++||||+|.+.
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDESKLYESLN 521 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchHHHHHHHHH
Confidence 3444445544322110 0111 112257899999998865322 222335789999999999752
Q ss_pred ------heeeecccc-HHHHHHHHHH-hcccce-----------------------------------------------
Q 011667 263 ------VLLFSATFN-ETVKNFVTRI-VKDYNQ----------------------------------------------- 287 (480)
Q Consensus 263 ------~~~~SAT~~-~~~~~~~~~~-~~~~~~----------------------------------------------- 287 (480)
.++++.|+- +.+..+.... +..|..
T Consensus 522 ~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E 601 (1373)
T KOG0384|consen 522 QFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEE 601 (1373)
T ss_pred HhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcc
Confidence 677777742 2222221110 000000
Q ss_pred --eee-----------------------cccccc--cc--------ccEEEEEEcCchh---------------------
Q 011667 288 --LFV-----------------------KKEELS--LE--------SVKQYKVYCPDEL--------------------- 311 (480)
Q Consensus 288 --~~~-----------------------~~~~~~--~~--------~~~~~~~~~~~~~--------------------- 311 (480)
+.+ +..... +- ...|.|..-+.+.
T Consensus 602 ~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~s 681 (1373)
T KOG0384|consen 602 TILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQS 681 (1373)
T ss_pred eEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHh
Confidence 000 000000 00 0011111111111
Q ss_pred -HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhc---CCCcEEEEccc
Q 011667 312 -AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD---GLTQVLISTDV 387 (480)
Q Consensus 312 -~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---g~~~iLv~T~~ 387 (480)
.|+..|-++|..+...+++||||.+.+.+.+.|+++|..++++...|.|++....|..+++.|+. ....+|+||.+
T Consensus 682 SGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRA 761 (1373)
T KOG0384|consen 682 SGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRA 761 (1373)
T ss_pred cCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 11122333444555667899999999999999999999999999999999999999999999985 35568999999
Q ss_pred cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCce--eEEEEeeCCc-cHHHHHHHHHHh
Q 011667 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD-DMIIMEKIERYF 456 (480)
Q Consensus 388 ~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g--~~~~l~~~~~-~~~~~~~i~~~l 456 (480)
.+-|||+..+++||+||..|+|.+ =+|..-||.|.|++. .+|.|++.+. +..++++-.+.+
T Consensus 762 GGLGINLatADTVIIFDSDWNPQN--------DLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 762 GGLGINLATADTVIIFDSDWNPQN--------DLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred CcccccccccceEEEeCCCCCcch--------HHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHh
Confidence 999999999999999999997655 578999999999765 5788898654 444555444433
No 129
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=180.02 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=102.7
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.|-.||.+.+..+-.+ ..++++|||.+|||++--..+=..+.. .....++++.||++|+.|+...+...........
T Consensus 511 ~Pd~WQ~elLDsvDr~--eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRN--ESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CCcHHHHHHhhhhhcc--cceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3788999999888887 899999999999999755545444444 3455889999999999999988876553222211
Q ss_pred e-EeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC---ccccCceEEEEEcCchhhhhh----------------
Q 011667 203 E-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK---KLGFSRLKILVYDEADHMLDE---------------- 262 (480)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~~~~lViDEah~l~~~---------------- 262 (480)
. ...+.- .+ ......-.|+|+|+-|+-+..+|... .-...+++++|+||+|.+...
T Consensus 588 g~sl~g~l---tq-EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP 663 (1330)
T KOG0949|consen 588 GVSLLGDL---TQ-EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCP 663 (1330)
T ss_pred chhhHhhh---hH-HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCC
Confidence 1 111111 11 11122335899999999998888763 345678999999999998662
Q ss_pred heeeeccccH
Q 011667 263 VLLFSATFNE 272 (480)
Q Consensus 263 ~~~~SAT~~~ 272 (480)
++++|||+.+
T Consensus 664 ~L~LSATigN 673 (1330)
T KOG0949|consen 664 FLVLSATIGN 673 (1330)
T ss_pred eeEEecccCC
Confidence 8899999764
No 130
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=9.9e-19 Score=188.10 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=100.7
Q ss_pred HHHHHHHHhcc-cCCcEEEEeCchhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 011667 316 VIRDRIFELGE-KMGQTIIFVRTKNSASALHKALKDFGY--EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 392 (480)
Q Consensus 316 ~l~~~l~~~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gl 392 (480)
.+...+..... ..+++|||++|.+..+.++..|..... ....+.-++....|..+++.|+.+...||++|+.+.+|+
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 34444444432 567999999999999999999975422 122333344445688899999999889999999999999
Q ss_pred CCCC--CCEEEEccCCCCCCCC----------------------CCCCcccccccccccccCCCceeEEEEeeCC-ccHH
Q 011667 393 DQQQ--VNLIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG-DDMI 447 (480)
Q Consensus 393 di~~--v~~Vi~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~-~~~~ 447 (480)
|+|+ +++||...+|.....+ ++.....+.|.+||.-|...+-.+++++... ....
T Consensus 819 D~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~ 898 (928)
T PRK08074 819 DIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTS 898 (928)
T ss_pred ccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccch
Confidence 9997 5889998888743221 0112333478999999987554445444221 1233
Q ss_pred HHHHHHHHhCCcceecCCCHHHHHHHH
Q 011667 448 IMEKIERYFDIKVTEVRNSDEDFKAAL 474 (480)
Q Consensus 448 ~~~~i~~~l~~~~~~~~~~~~~~~~~~ 474 (480)
+.+.+-+-+.. +.....+..++...+
T Consensus 899 Yg~~~l~sLP~-~~~~~~~~~~~~~~~ 924 (928)
T PRK08074 899 YGKYFLESLPT-VPVYEGTLEELLEEV 924 (928)
T ss_pred HHHHHHHhCCC-CCcccCCHHHHHHHH
Confidence 44445444432 222224555554444
No 131
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.80 E-value=8.2e-18 Score=170.05 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhc----CCCcEEEEccccccCCCC--------
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD----GLTQVLISTDVLARGFDQ-------- 394 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~----g~~~iLv~T~~~~~Gldi-------- 394 (480)
..|++||.++|...++.++..|...--..+.+.|..+ .+..++++|+. |...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5789999999999999999999654223344445432 35668888886 478999999999999999
Q ss_pred C--CCCEEEEccCCCCCCCCC-----------------CCCcccccccccccccCCCc--eeEEEEee
Q 011667 395 Q--QVNLIVNYDPPVKHGKHL-----------------EPDCEVYLHRIGRAGRFGRK--GVVFNLLM 441 (480)
Q Consensus 395 ~--~v~~Vi~~~~p~~~~~~~-----------------~~s~~~y~qr~GR~gR~g~~--g~~~~l~~ 441 (480)
| .+++||+..+|+.+.+.+ +.....+.|-+||.-|...+ -..+.++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD 614 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLD 614 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEe
Confidence 3 399999988886542210 11122346889999997765 34444553
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.1e-17 Score=170.64 Aligned_cols=261 Identities=16% Similarity=0.170 Sum_probs=180.3
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.+|.. |+++|.-.--.+..| -|+.+.||-|||+++.+|++-... .|..|-||+++.-||..-++++..+...
T Consensus 81 ~lG~r-~ydVQliGgl~Lh~G----~IAEM~TGEGKTL~atlpaylnAL---~GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 81 VLGMR-HFDVQLIGGMVLHEG----QIAEMKTGEGKTLVATLPSYLNAL---TGKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred HhCCC-cchhHHHhhhhhcCC----ceeeecCCCChhHHHHHHHHHHhh---cCCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 35655 888888766666555 699999999999999998875433 3557999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-----HHHHhc--CccccCceEEEEEcCchhhhhh--------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-----KKWMSA--KKLGFSRLKILVYDEADHMLDE-------- 262 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-----~~~l~~--~~~~~~~~~~lViDEah~l~~~-------- 262 (480)
+|+.+.++..+.. ...++....+||+++|+..| .+.+.. .....+.+.+.||||||.++-.
T Consensus 153 LGLtvg~i~~~~~----~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLII 228 (939)
T PRK12902 153 LGLSVGLIQQDMS----PEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLII 228 (939)
T ss_pred hCCeEEEECCCCC----hHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccc
Confidence 9999888754332 22334445689999999887 343332 2234567899999999987530
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 229 Sg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~ 308 (939)
T PRK12902 229 SGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKE 308 (939)
T ss_pred cCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------heeeeccccHHH
Q 011667 263 --------------------------------------------------------------------VLLFSATFNETV 274 (480)
Q Consensus 263 --------------------------------------------------------------------~~~~SAT~~~~~ 274 (480)
+.+||.|.....
T Consensus 309 lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~ 388 (939)
T PRK12902 309 LFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEE 388 (939)
T ss_pred HHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHH
Confidence 455666655444
Q ss_pred HHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc
Q 011667 275 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 354 (480)
.++..-+-.+...+........ ....-........|...+.+.+.+....+.|+||-|.|++.++.++..|...|++
T Consensus 389 ~Ef~~iY~l~Vv~IPTnkP~~R---~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 389 VEFEKTYKLEVTVIPTNRPRRR---QDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHHhCCcEEEcCCCCCeee---ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 3333322222111111111111 1111112234567788888778887778999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHH-HHHHHhcCCC-cEEEEccccccCCCCC
Q 011667 355 VTTIMGATIQEERDK-IVKEFKDGLT-QVLISTDVLARGFDQQ 395 (480)
Q Consensus 355 ~~~l~~~~~~~~r~~-~~~~f~~g~~-~iLv~T~~~~~Gldi~ 395 (480)
+..++..-...+++. ++. ..|+. .|.|||++++||-||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 999988633223322 332 24544 5899999999999975
No 133
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.4e-18 Score=144.14 Aligned_cols=120 Identities=38% Similarity=0.628 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
.+...+.+.+.......+++||||++...++.+++.|...+..+..+||+++..+|..+++.|+++...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 66667777666655467899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEE
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l 439 (480)
+|+|++++||++++| .+...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~--------~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLP--------WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCC--------CCHHHheecccccccCCCCceEEeC
Confidence 999999999999999 6788999999999999998888753
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.80 E-value=5.3e-18 Score=171.64 Aligned_cols=303 Identities=19% Similarity=0.222 Sum_probs=187.0
Q ss_pred CChHHHHhhcccccC---C-----CCccEEEEccCCCccchHhHHHHhhccCCCCCC-----CeEEEEecCHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILT---P-----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA-----PQALCICPTRELAIQNLE 189 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~---~-----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~-----~~~lil~Pt~~La~q~~~ 189 (480)
.++|+|.+.+..+.. | ....+|++-.+|+|||+..+..+...+.. .+. .++|||+|. .|+..|..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccccccccEEEccH-HHHHHHHH
Confidence 467999999866543 2 12468899999999999855544444443 334 689999997 59999999
Q ss_pred HHHHHhcccCceeeEeecCCCCCcc-----cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh--
Q 011667 190 VLRKMGKHTGITSECAVPTDSTNYV-----PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-- 262 (480)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-- 262 (480)
+|.+|.....+......+....... ...........|++.+++.+.+.+. .+....++++|+||.|++-++
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~~s 393 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNSDS 393 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccchhh
Confidence 9999987655555444444432000 0001111235688899999876655 345667899999999998663
Q ss_pred -------------heeeecccc-HHHHHHHH-------------------------------------------------
Q 011667 263 -------------VLLFSATFN-ETVKNFVT------------------------------------------------- 279 (480)
Q Consensus 263 -------------~~~~SAT~~-~~~~~~~~------------------------------------------------- 279 (480)
.|++|.|+= +++.+++.
T Consensus 394 ~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~ 473 (776)
T KOG0390|consen 394 LTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELREL 473 (776)
T ss_pred HHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHH
Confidence 788888842 12211111
Q ss_pred --HHhcccceeeeccccccccccEEEEEEcCch-----------------------------------------------
Q 011667 280 --RIVKDYNQLFVKKEELSLESVKQYKVYCPDE----------------------------------------------- 310 (480)
Q Consensus 280 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 310 (480)
.++..... ......++....+.+.+...
T Consensus 474 t~~fi~rrt~---~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 474 TNKFILRRTG---DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHhheeeccc---chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 11100000 00000111222222222211
Q ss_pred --------------------------hHHHHHHHHHHHHhcccCCcEEEEe---Cchhh-HHHHHHHHHhCCCcEEEecC
Q 011667 311 --------------------------LAKVMVIRDRIFELGEKMGQTIIFV---RTKNS-ASALHKALKDFGYEVTTIMG 360 (480)
Q Consensus 311 --------------------------~~k~~~l~~~l~~~~~~~~~~lVf~---~s~~~-~~~l~~~L~~~~~~~~~l~~ 360 (480)
..++..|..++... ..++++|+ ....+ .+.+...++-.|+.+..+||
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~---~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI---REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH---hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 11112222211111 12333333 33333 33334444455999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--c-EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEE
Q 011667 361 ATIQEERDKIVKEFKDGLT--Q-VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437 (480)
Q Consensus 361 ~~~~~~r~~~~~~f~~g~~--~-iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~ 437 (480)
.|+..+|+.+++.|++... . +|.+|-+.+.||++-+++.||.||++|+| +.-.|.+.|+.|.|++-.|+
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNP--------a~d~QAmaR~~RdGQKk~v~ 699 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNP--------AVDQQAMARAWRDGQKKPVY 699 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCc--------hhHHHHHHHhccCCCcceEE
Confidence 9999999999999996443 3 46677889999999999999999999864 55789999999999877665
Q ss_pred --EEeeCC
Q 011667 438 --NLLMDG 443 (480)
Q Consensus 438 --~l~~~~ 443 (480)
.|++..
T Consensus 700 iYrLlatG 707 (776)
T KOG0390|consen 700 IYRLLATG 707 (776)
T ss_pred EEEeecCC
Confidence 455543
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=179.23 Aligned_cols=326 Identities=17% Similarity=0.261 Sum_probs=200.1
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
..+|+.+.- .++..++.- ..-.+|+|+|+.|+...+.| .+...=+.+.+|+|||+. .+-+...+.. .++|+
T Consensus 139 ~IDW~~f~p-~e~~~nl~l-~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~----~~iL~ 211 (1518)
T COG4889 139 PIDWDIFDP-TELQDNLPL-KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAA----ARILF 211 (1518)
T ss_pred CCChhhcCc-ccccccccc-CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhh----hheEe
Confidence 345554433 344444433 45668999999999999876 122334456689999998 4445555543 58999
Q ss_pred EecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cc---------------------cCCCCCCCeEEEeChHH
Q 011667 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PI---------------------SKRPPVTAQVVIGTPGT 233 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------~~~~~~~~~I~v~Tp~~ 233 (480)
|+|+..|..|..+.+..-. .+.++...+......... .. ......+--|+++|++.
T Consensus 212 LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQS 290 (1518)
T COG4889 212 LVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQS 290 (1518)
T ss_pred ecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccc
Confidence 9999999999776654321 223333333332211110 00 01122245699999999
Q ss_pred HHHHHhcCccccCceEEEEEcCchhhhh-----------------------hheeeecccc---HHHHH-----------
Q 011667 234 IKKWMSAKKLGFSRLKILVYDEADHMLD-----------------------EVLLFSATFN---ETVKN----------- 276 (480)
Q Consensus 234 l~~~l~~~~~~~~~~~~lViDEah~l~~-----------------------~~~~~SAT~~---~~~~~----------- 276 (480)
+...-......+..+++||+||||+... ..+.|+||+. +..+.
T Consensus 291 l~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~S 370 (1518)
T COG4889 291 LPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSS 370 (1518)
T ss_pred hHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeec
Confidence 9887777667788999999999999654 2778888853 11111
Q ss_pred -------------------HHHHHhcccceeeeccccccccccEEEEEEcCc------hhHHHHHHHHHHHHhcc-----
Q 011667 277 -------------------FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD------ELAKVMVIRDRIFELGE----- 326 (480)
Q Consensus 277 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~~----- 326 (480)
....++.++.++.............+....-+. ...++.-...-+.+...
T Consensus 371 MDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~ 450 (1518)
T COG4889 371 MDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDL 450 (1518)
T ss_pred cchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccc
Confidence 112233344443333222222211111111111 11222222222222111
Q ss_pred --------cCCcEEEEeCchhhHHHHHHHHHh---------------CCCcEEEecCCCCHHHHHHHHH---HHhcCCCc
Q 011667 327 --------KMGQTIIFVRTKNSASALHKALKD---------------FGYEVTTIMGATIQEERDKIVK---EFKDGLTQ 380 (480)
Q Consensus 327 --------~~~~~lVf~~s~~~~~~l~~~L~~---------------~~~~~~~l~~~~~~~~r~~~~~---~f~~g~~~ 380 (480)
+..++|-||.++++...++..+.. +.+.+..+.|.|+..+|...+. .|...+++
T Consensus 451 ~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neck 530 (1518)
T COG4889 451 KNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECK 530 (1518)
T ss_pred cCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhe
Confidence 124779999999988887766532 1344566779999999966554 34567889
Q ss_pred EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC---CceeEEEEe
Q 011667 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG---RKGVVFNLL 440 (480)
Q Consensus 381 iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g---~~g~~~~l~ 440 (480)
||--...+++|+|+|.++.||.|++. .|+.+.+|.+||+.|-. .-|..|+=+
T Consensus 531 IlSNaRcLSEGVDVPaLDsViFf~pr--------~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 531 ILSNARCLSEGVDVPALDSVIFFDPR--------SSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred eeccchhhhcCCCccccceEEEecCc--------hhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999988 89999999999999942 235555433
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.78 E-value=5.6e-17 Score=152.36 Aligned_cols=312 Identities=16% Similarity=0.201 Sum_probs=199.5
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceee
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE 203 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~ 203 (480)
+.|+|.+.+...++.+ ..+++...+|.|||+.++. |..+... ....||+||.. +-..|.+.+.+|.....- +
T Consensus 199 LlPFQreGv~faL~Rg-GR~llADeMGLGKTiQAla-IA~yyra---EwplliVcPAs-vrftWa~al~r~lps~~p-i- 270 (689)
T KOG1000|consen 199 LLPFQREGVIFALERG-GRILLADEMGLGKTIQALA-IARYYRA---EWPLLIVCPAS-VRFTWAKALNRFLPSIHP-I- 270 (689)
T ss_pred hCchhhhhHHHHHhcC-CeEEEecccccchHHHHHH-HHHHHhh---cCcEEEEecHH-HhHHHHHHHHHhcccccc-e-
Confidence 4599999999888753 6899999999999998544 3333222 23589999985 667899999998765432 2
Q ss_pred EeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------hheee
Q 011667 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-----------------EVLLF 266 (480)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-----------------~~~~~ 266 (480)
.++.+...+... ...-..|.|.+++.+..+-. .+.-..+++||+||+|.+.+ .++++
T Consensus 271 ~vv~~~~D~~~~----~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLPD----VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCccc----cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 222222222111 11124699999998765433 23334589999999999876 37899
Q ss_pred ecccc-------------------HHHHHHHHHHhcccc-eeeecc--------------------------cccccccc
Q 011667 267 SATFN-------------------ETVKNFVTRIVKDYN-QLFVKK--------------------------EELSLESV 300 (480)
Q Consensus 267 SAT~~-------------------~~~~~~~~~~~~~~~-~~~~~~--------------------------~~~~~~~~ 300 (480)
|.|.. +..-++..+++..-. .+.... ....+..-
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99942 111122222221100 000000 00001111
Q ss_pred EEEEEEcCc------------------------------------hhHHHHHHHHHHHH----hcccCCcEEEEeCchhh
Q 011667 301 KQYKVYCPD------------------------------------ELAKVMVIRDRIFE----LGEKMGQTIIFVRTKNS 340 (480)
Q Consensus 301 ~~~~~~~~~------------------------------------~~~k~~~l~~~l~~----~~~~~~~~lVf~~s~~~ 340 (480)
.+..+.+.. ...|+..+.+.+.. .-.+..+.+|||.....
T Consensus 425 r~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 425 REVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred eEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 111111110 01112222222333 12345689999999999
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcc
Q 011667 341 ASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG-LTQV-LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCE 418 (480)
Q Consensus 341 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~i-Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~ 418 (480)
.+.+...+.++++..+.+.|..+..+|..+.+.|... ++.| +++-.+++.|+++...+.||...++|+++.
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv------- 577 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV------- 577 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce-------
Confidence 9999999999999999999999999999999999854 4555 567788899999999999999999976554
Q ss_pred cccccccccccCCCceeEE--EEeeCCc-cHHHHHHHHHHhC
Q 011667 419 VYLHRIGRAGRFGRKGVVF--NLLMDGD-DMIIMEKIERYFD 457 (480)
Q Consensus 419 ~y~qr~GR~gR~g~~g~~~--~l~~~~~-~~~~~~~i~~~l~ 457 (480)
.+|.--|+.|.|++..+. .|+..+. |..++..+.+.+.
T Consensus 578 -LlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 578 -LLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred -EEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 788888888888754433 3444332 4567777766653
No 137
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.3e-18 Score=165.51 Aligned_cols=340 Identities=16% Similarity=0.099 Sum_probs=228.0
Q ss_pred HHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHH
Q 011667 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (480)
Q Consensus 110 ~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (480)
++...+.+.+--.....+|..++..+-+| +++++.-.|.+||.++|.+.....+... .....+++.|+.++++...+
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G--~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEG--RADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhc--ccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCC
Confidence 34444555456667889999999999999 9999999999999999988876554332 23467899999998876443
Q ss_pred HHHHHhcccC-ce--eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcccc----CceEEEEEcCchhhhh-
Q 011667 190 VLRKMGKHTG-IT--SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF----SRLKILVYDEADHMLD- 261 (480)
Q Consensus 190 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~----~~~~~lViDEah~l~~- 261 (480)
.+.-...... .+ +.-.+.+..... .......+..++++.|.......-.+...+ -...++++||+|..+.
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~--~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETT--KSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchh--HHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 2211110000 00 001111111111 122233357899999988765554433332 2456889999997543
Q ss_pred -------------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch------
Q 011667 262 -------------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE------ 310 (480)
Q Consensus 262 -------------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 310 (480)
+++-.|||+...++.... . -+...+..-.....+..-++++++-+..
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~-~-~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSE-L-ANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHH-h-cCCcceEEEEecCCCCccceEEEeCCCCCCcchh
Confidence 245567777665543222 2 2223333333444555666777766532
Q ss_pred --hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHhcCCCc
Q 011667 311 --LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GY----EVTTIMGATIQEERDKIVKEFKDGLTQ 380 (480)
Q Consensus 311 --~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~g~~~ 380 (480)
..++.....++.++...+-++|-||.+++.|+.+.+..+.. +. .+..+.|+...++|.++....-.|+..
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 23344444445566667789999999999999887765442 21 356788999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeC-CccHHHHHHHHHHhCCc
Q 011667 381 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD-GDDMIIMEKIERYFDIK 459 (480)
Q Consensus 381 iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~~i~~~l~~~ 459 (480)
-+|+|++++-||||.+++.|++.+.| .|+..+-|..||+||.+++..++.+... +-+..++..=...++.+
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP--------~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFP--------GSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCc--------hhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 99999999999999999999999999 8899999999999998887766544432 23556666666666666
Q ss_pred ceecC
Q 011667 460 VTEVR 464 (480)
Q Consensus 460 ~~~~~ 464 (480)
-.++.
T Consensus 658 N~EL~ 662 (1034)
T KOG4150|consen 658 NEELH 662 (1034)
T ss_pred cceeE
Confidence 66654
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.6e-18 Score=171.07 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEccccc
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL-T-QVLISTDVLA 389 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~-~-~iLv~T~~~~ 389 (480)
.|+..|..+|-.....+.++|||..--...+.|...|..+++....+.|.....+|+.+++.|...+ + -+|++|.+.+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 4555566655566666789999999999999999999999999999999999999999999998665 3 3588999999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC--ceeEEEEeeCCccHHHHHHH
Q 011667 390 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIMEKI 452 (480)
Q Consensus 390 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~~~~~~~~~~~i 452 (480)
-|||+..+++||.+|+..+|.+ =.|.--|+.|.|+ +=.++.|++...-...+..+
T Consensus 841 ~GINLt~An~VIihD~dFNP~d--------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~l 897 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYD--------DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRL 897 (941)
T ss_pred ceecccccceEEEeecCCCCcc--------cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHH
Confidence 9999999999999999976655 4566666777664 55678899876533333333
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.76 E-value=2e-17 Score=169.79 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=99.8
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEccccccCCCCCCCCEEEE
Q 011667 328 MGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDG-LTQVL-ISTDVLARGFDQQQVNLIVN 402 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~iL-v~T~~~~~Gldi~~v~~Vi~ 402 (480)
.+|+||||+-+...+.+.+-|-+. .+....+.|..++.+|.++.++|+++ .++|| ++|-+.+-|+|+.+++.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 469999999999999998877554 44566899999999999999999998 67775 68899999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCcee--EEEEeeCCccHHHHHHHHHH
Q 011667 403 YDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDGDDMIIMEKIERY 455 (480)
Q Consensus 403 ~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~--~~~l~~~~~~~~~~~~i~~~ 455 (480)
++-.|+|+.+ +|.+-||.|.|++-. ++.|++.+.-...+..+++|
T Consensus 1420 vEHDWNPMrD--------LQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1420 VEHDWNPMRD--------LQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred EecCCCchhh--------HHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHH
Confidence 9999988763 799999999998754 57788766545555556555
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=2.7e-17 Score=156.62 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=180.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+-++-+|||.||||.- +|+++.... ..++.-|.|-||..+++.+...+..+ ..+.|........ .
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~gipC----dL~TGeE~~~~~~--~-- 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNALGIPC----DLLTGEERRFVLD--N-- 256 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhcCCCc----cccccceeeecCC--C--
Confidence 5678899999999975 566665533 45888899999999999998875443 3333333222111 1
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhhheeeeccc--------------cHHHHHHHHHHhcccc
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLLFSATF--------------NETVKNFVTRIVKDYN 286 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~SAT~--------------~~~~~~~~~~~~~~~~ 286 (480)
...++.+-||-+.. .+ -..+++.|+||.++|-+..-++.-|- .+.+..+++.++....
T Consensus 257 ~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TG 328 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTG 328 (700)
T ss_pred CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcC
Confidence 12356777777644 11 23589999999999987533333220 1233333333332211
Q ss_pred eeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHH
Q 011667 287 QLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQE 365 (480)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~ 365 (480)
+.+....+..-....-...+...+... ..|.++| |-|++....+...+.+.+.. +..++|++++.
T Consensus 329 -----------d~vev~~YeRl~pL~v~~~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 329 -----------DDVEVREYERLSPLVVEETALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPE 394 (700)
T ss_pred -----------CeeEEEeecccCcceehhhhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCc
Confidence 111111111000111111111111111 3456655 66889999999999888665 99999999999
Q ss_pred HHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCC-CCCCcccccccccccccCCC---ceeEEEE
Q 011667 366 ERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH-LEPDCEVYLHRIGRAGRFGR---KGVVFNL 439 (480)
Q Consensus 366 ~r~~~~~~f~~--g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~-~~~s~~~y~qr~GR~gR~g~---~g~~~~l 439 (480)
.|...-..|++ ++++||||||++++|+|+ +++.||.|++-+..+.. ...+..+..|.+|||||.|. .|.+.+|
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 99999999997 899999999999999999 78888888876433332 23456777999999999874 6888888
Q ss_pred eeCCccHHHHHHHHHHhCCcceecC
Q 011667 440 LMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 440 ~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
..+ + +..+.+.++.+++.+.
T Consensus 474 ~~e--D---L~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 474 HSE--D---LKLLKRILKRPVEPIK 493 (700)
T ss_pred eHh--h---HHHHHHHHhCCchHHH
Confidence 863 2 4556666666666554
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=3.8e-18 Score=127.39 Aligned_cols=78 Identities=45% Similarity=0.744 Sum_probs=74.8
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCccccccccc
Q 011667 346 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIG 425 (480)
Q Consensus 346 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~G 425 (480)
++|...++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++| .++..|.|++|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~--------~~~~~~~Q~~G 72 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPP--------WSPEEYIQRIG 72 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSE--------SSHHHHHHHHT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccC--------CCHHHHHHHhh
Confidence 3678889999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred ccccCC
Q 011667 426 RAGRFG 431 (480)
Q Consensus 426 R~gR~g 431 (480)
|++|.|
T Consensus 73 R~~R~g 78 (78)
T PF00271_consen 73 RAGRIG 78 (78)
T ss_dssp TSSTTT
T ss_pred cCCCCC
Confidence 999986
No 142
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=5.7e-17 Score=144.63 Aligned_cols=169 Identities=28% Similarity=0.396 Sum_probs=127.2
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+++..|+++|.++++.++.+. +.+++.++||+|||.+++.+++..+.... ..+++|++|++.++.|+...+..+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL-RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 577889999999999998753 68999999999999998999888876543 4589999999999999999999887654
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------------- 261 (480)
........++.... ...........+|+++|++.+.+.+.........++++|+||||.+..
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 82 GLKVVGLYGGDSKR-EQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CeEEEEEeCCcchH-HHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCcc
Confidence 32222333332211 111111111238999999999999988666677899999999999874
Q ss_pred -hheeeeccccHHHHHHHHHHhcccceeee
Q 011667 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFV 290 (480)
Q Consensus 262 -~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 290 (480)
.++++|||+++........++.....+..
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 27899999998888878877775444433
No 143
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.71 E-value=1.3e-15 Score=159.19 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHh----cCCCcEEEEccccc
Q 011667 315 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFK----DGLTQVLISTDVLA 389 (480)
Q Consensus 315 ~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~----~g~~~iLv~T~~~~ 389 (480)
..+.+.+.......+++|||++|....+.++..|... +.. ...+|. ..+..+++.|+ .++..||++|+.+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 3444444444445667999999999999999998643 333 334453 24677887776 46778999999999
Q ss_pred cCCCCCC--CCEEEEccCCCCCCCCC----------------------CCCcccccccccccccCCCceeEEEEe
Q 011667 390 RGFDQQQ--VNLIVNYDPPVKHGKHL----------------------EPDCEVYLHRIGRAGRFGRKGVVFNLL 440 (480)
Q Consensus 390 ~Gldi~~--v~~Vi~~~~p~~~~~~~----------------------~~s~~~y~qr~GR~gR~g~~g~~~~l~ 440 (480)
+|+|+|+ +++||...+|....++. +.-...+.|.+||.-|...+-.+++++
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 9999997 78999999886533210 011223468899999976554444444
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.3e-16 Score=161.41 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=102.6
Q ss_pred chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccc
Q 011667 309 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT-QVLISTDV 387 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~ 387 (480)
....|+..+.+.+......+.|+||-|.|++..+.++.+|...|++.-.|++.....+-..+-+ .|+. .|.|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccC
Confidence 4457788888878888888999999999999999999999999999888888755444444333 3443 58899999
Q ss_pred cccCCCCC--------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 388 LARGFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 388 ~~~Gldi~--------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
++||-||. +--|||--..+ .|...--|-.||+||.|.+|.+..|++-.|+
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerh--------eSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERH--------ESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCC--------CcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999998 44577777677 7788889999999999999999988886554
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.69 E-value=9.7e-15 Score=140.69 Aligned_cols=271 Identities=18% Similarity=0.238 Sum_probs=193.4
Q ss_pred CCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc-Cce----eeEeec---------------------------CCCCCc
Q 011667 166 DPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GIT----SECAVP---------------------------TDSTNY 213 (480)
Q Consensus 166 ~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~----~~~~~~---------------------------~~~~~~ 213 (480)
.++...|+||||+|+|..|..+.+.+.++.... .+. ..--.+ |...+.
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 455668899999999999999999888775541 110 000000 000000
Q ss_pred c----------cccCCCCCCCeEEEeChHHHHHHHhc------CccccCceEEEEEcCchhhhhh---------------
Q 011667 214 V----------PISKRPPVTAQVVIGTPGTIKKWMSA------KKLGFSRLKILVYDEADHMLDE--------------- 262 (480)
Q Consensus 214 ~----------~~~~~~~~~~~I~v~Tp~~l~~~l~~------~~~~~~~~~~lViDEah~l~~~--------------- 262 (480)
. .........+|||||+|-.|...+.. ..-.++++.++|+|.||.|+.|
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccC
Confidence 0 00011223589999999999988874 2235889999999999998763
Q ss_pred --------------------------heeeeccccHHHHHHHHHHhccccee-ee--ccc-----cccccccEEEEEEcC
Q 011667 263 --------------------------VLLFSATFNETVKNFVTRIVKDYNQL-FV--KKE-----ELSLESVKQYKVYCP 308 (480)
Q Consensus 263 --------------------------~~~~SAT~~~~~~~~~~~~~~~~~~~-~~--~~~-----~~~~~~~~~~~~~~~ 308 (480)
++++|+...+.+..+....+.+..-. .+ ... ......+.|.+...+
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 89999999999999888876654321 11 111 223345667766543
Q ss_pred ------chhHHHHHHHHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 011667 309 ------DELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379 (480)
Q Consensus 309 ------~~~~k~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 379 (480)
.....+.++...++... ...+++|||++|.-+--++..+|.+.++....+|...++.+-.++-..|..|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 23445555555444333 366899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccc--cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC------CceeEEEEeeCCc
Q 011667 380 QVLISTDVLA--RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG------RKGVVFNLLMDGD 444 (480)
Q Consensus 380 ~iLv~T~~~~--~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g------~~g~~~~l~~~~~ 444 (480)
.||+.|.-+. +-..|.++++||.|++| ..+.-|...++-.+... ....|.++|+.-|
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P--------~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D 416 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPP--------ENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD 416 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCC--------CChhHHHHHHhhhcccccccccccCceEEEEecHhH
Confidence 9999998765 78889999999999999 55666655554333322 2578999998543
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.69 E-value=9.5e-16 Score=161.41 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=89.0
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCC--CCEEEE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQQ--VNLIVN 402 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~--v~~Vi~ 402 (480)
..+++|||++|.+.++.+++.+...... ....+|.. .+..+++.|+.+.- .++|+|..+++|+|+|+ .+.||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4568999999999999999999876542 34444443 34478888886655 89999999999999997 588999
Q ss_pred ccCCCCCCCC----------------------CCCCcccccccccccccCCCceeEEEEeeCCc-cHHHHHHHHHHhCCc
Q 011667 403 YDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD-DMIIMEKIERYFDIK 459 (480)
Q Consensus 403 ~~~p~~~~~~----------------------~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~-~~~~~~~i~~~l~~~ 459 (480)
.+.|+-..++ ++..+....|.+||+-|...+..+++++...- ...+.+.+-+.+...
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 9988653322 11123334799999999655544554553221 122344444444444
Q ss_pred cee
Q 011667 460 VTE 462 (480)
Q Consensus 460 ~~~ 462 (480)
+..
T Consensus 635 ~~~ 637 (654)
T COG1199 635 PKS 637 (654)
T ss_pred ccc
Confidence 433
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.69 E-value=7.1e-16 Score=157.30 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCC--CcEEEEccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL--TQVLISTDV 387 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~--~~iLv~T~~ 387 (480)
+..|+..|.-+|.++...++++|||+...++.+.|..+|+-+|+..+.+.|....++|+.++++|+... .++|++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 456777776667777778899999999999999999999999999999999999999999999999764 356889999
Q ss_pred cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 388 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 388 ~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
.+.|||+.+++.||+||..|++.-+ .-..+..|||||+ ++=+.|.|+++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMD--aQAQDrChRIGqt----RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMD--AQAQDRCHRIGQT----RDVHIYRLISERT 1388 (1958)
T ss_pred CccccccccCceEEEecCCCCchhh--hHHHHHHHhhcCc----cceEEEEeeccch
Confidence 9999999999999999999987432 2245556666666 4668899998653
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=2.2e-15 Score=155.48 Aligned_cols=299 Identities=16% Similarity=0.171 Sum_probs=188.7
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH-HHhcccCcee
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITS 202 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~ 202 (480)
..|+|.++++.+.+. ++++++.+|+|||||.++-++++. .....+++++.|..+.+..+++.+. ++....|..+
T Consensus 1144 ~n~iqtqVf~~~y~~-nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNT-NDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred cCCceEEEEeeeecc-cceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 379999999999886 389999999999999998888876 2345689999999999888776554 5666666665
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-----heeee----------
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-----VLLFS---------- 267 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-----~~~~S---------- 267 (480)
....|..+.+. .+....+|+|+||+++..+ + ....+++.|+||+|.+.++ -+++|
T Consensus 1219 ~~l~ge~s~~l-----kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1219 VKLTGETSLDL-----KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred EecCCccccch-----HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh
Confidence 55544443332 2333468999999997554 2 5677899999999998864 23333
Q ss_pred --------ccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc--hhHH----HHHHHHHHHHhcccCCcEEE
Q 011667 268 --------ATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD--ELAK----VMVIRDRIFELGEKMGQTII 333 (480)
Q Consensus 268 --------AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k----~~~l~~~l~~~~~~~~~~lV 333 (480)
..+.+. .++ ..+. +..++......++....-....+.. .... .......+.......++.+|
T Consensus 1289 ~ir~v~ls~~lana-~d~--ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~v 1364 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANA-RDL--IGAS-SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIV 1364 (1674)
T ss_pred heeEEEeehhhccc-hhh--cccc-ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEE
Confidence 222111 000 0011 1111111112222222222222221 1111 11222234445557789999
Q ss_pred EeCchhhHHHHHHHHHh----------------------CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 334 FVRTKNSASALHKALKD----------------------FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 334 f~~s~~~~~~l~~~L~~----------------------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
|+++++.|..++..|-. ..+++..=|.+++..+...+..-|..|.+.|+|...- ..|
T Consensus 1365 f~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~ 1443 (1674)
T KOG0951|consen 1365 FLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYG 1443 (1674)
T ss_pred EeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccc
Confidence 99999998887754422 1222333388999999999999999999999988776 788
Q ss_pred CCCCCCCEEEEccCCC-CCCCC--CCCCcccccccccccccCCCceeEEEEeeCCccH
Q 011667 392 FDQQQVNLIVNYDPPV-KHGKH--LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 446 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~-~~~~~--~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~ 446 (480)
+-... +.||..+.-. .+..+ ..-+.....|++|+|.| .|+|+++....+.+
T Consensus 1444 ~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~ 1497 (1674)
T KOG0951|consen 1444 TKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKE 1497 (1674)
T ss_pred ccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHH
Confidence 77643 4444333221 11111 11346677999999988 56899888765443
No 149
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.61 E-value=9.7e-16 Score=155.20 Aligned_cols=305 Identities=18% Similarity=0.153 Sum_probs=196.0
Q ss_pred CChHHHHhhcccccC--CCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCc
Q 011667 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
++.++|...+.++.. +++-+.|++..+|.|||.+.+-.|...+......+..||+||+-.|.. |..++..|+.....
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccceee
Confidence 678899888876543 234688999999999998854444443433333446899999998864 67778888765432
Q ss_pred eeeEeecCCCCCccc-ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh----------------h
Q 011667 201 TSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE----------------V 263 (480)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~----------------~ 263 (480)
..+.+....... .........+|+++|++.+.. ....+.--++.++||||.|+|.+. .
T Consensus 473 ---i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~R 547 (1157)
T KOG0386|consen 473 ---IQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRR 547 (1157)
T ss_pred ---eeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHHhhccccchhh
Confidence 222222221111 122233578999999998754 111122335789999999999762 2
Q ss_pred eeeeccc-------------------------------------------------------------------------
Q 011667 264 LLFSATF------------------------------------------------------------------------- 270 (480)
Q Consensus 264 ~~~SAT~------------------------------------------------------------------------- 270 (480)
++++.|.
T Consensus 548 LLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~ 627 (1157)
T KOG0386|consen 548 LLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ 627 (1157)
T ss_pred hhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh
Confidence 3333331
Q ss_pred --cHHHHHHHHH-----------Hhcccceeeecc----------------------ccccccccEEEEEEc------Cc
Q 011667 271 --NETVKNFVTR-----------IVKDYNQLFVKK----------------------EELSLESVKQYKVYC------PD 309 (480)
Q Consensus 271 --~~~~~~~~~~-----------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~------~~ 309 (480)
|..+...++. .+.+.....+.. .......+...+... --
T Consensus 628 ~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R 707 (1157)
T KOG0386|consen 628 ELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVR 707 (1157)
T ss_pred hCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHH
Confidence 1111000000 000000000000 000000000000000 01
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT---QVLISTD 386 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~---~iLv~T~ 386 (480)
...|+..+...+-.+...++++|.||........+..+|.-.+++...+.|.....+|...++.|+.... .+|.+|.
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 2356666666666666678999999999999999999999999999999999999999999999996554 3678999
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEee
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~ 441 (480)
..+.|+|+..++.||.||..|+ +....|+.-|+.|.|+...+-++..
T Consensus 788 agglglNlQtadtviifdsdwn--------p~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWN--------PHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ccccccchhhcceEEEecCCCC--------chhHHHHHHHHHHhhchhheeeeee
Confidence 9999999999999999999965 5668899999999997655544443
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.61 E-value=5.5e-15 Score=124.02 Aligned_cols=117 Identities=34% Similarity=0.487 Sum_probs=87.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+++++.++||+|||..++..+...... ....+++|++|++.++.|+.+.+..+... +..+....+........ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE--KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH--HHh
Confidence 368999999999999988888776654 23568999999999999999998887764 45554444443222111 112
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
....+|+++|++.+...+.........++++|+||+|.+..
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~ 117 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh
Confidence 23578999999999888877655566789999999998754
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=7.3e-14 Score=147.28 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=62.1
Q ss_pred cCCCCChHHHHhhcccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
+.|..++|.|.+.+..+... .+.++++.+|||+|||++.+.|++..........++++.+.|..-..|+.+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 67887899999777555431 12899999999999999999999987664444568999999999999999999884
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=3.2e-15 Score=112.76 Aligned_cols=81 Identities=43% Similarity=0.748 Sum_probs=76.3
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccc
Q 011667 343 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 422 (480)
Q Consensus 343 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~q 422 (480)
.++..|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||.+++| .+...|.|
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~--------~~~~~~~Q 73 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP--------WSPASYIQ 73 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC--------CCHHHHHH
Confidence 4677888889999999999999999999999999999999999999999999999999999999 67899999
Q ss_pred cccccccCC
Q 011667 423 RIGRAGRFG 431 (480)
Q Consensus 423 r~GR~gR~g 431 (480)
++||++|.|
T Consensus 74 ~~gR~~R~g 82 (82)
T smart00490 74 RIGRAGRAG 82 (82)
T ss_pred hhcccccCC
Confidence 999999975
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=3.5e-15 Score=131.42 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=93.8
Q ss_pred CChHHHHhhcccccCC-----CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 123 KPSKIQAISLPMILTP-----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~-----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
+|+++|.+++..+... ..+.+++.+|||||||.+++..+..... +++|+||+..|+.|+...+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 3789999999998841 1389999999999999987765555433 8999999999999999999766543
Q ss_pred cCceeeEeec---------CCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-----------ccccCceEEEEEcCch
Q 011667 198 TGITSECAVP---------TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-----------KLGFSRLKILVYDEAD 257 (480)
Q Consensus 198 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-----------~~~~~~~~~lViDEah 257 (480)
.......... .................+++++|...|....... ......+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2211101000 0000000001112234689999999998776531 1234567899999999
Q ss_pred hhhhh-------------heeeecccc
Q 011667 258 HMLDE-------------VLLFSATFN 271 (480)
Q Consensus 258 ~l~~~-------------~~~~SAT~~ 271 (480)
++... +++||||+.
T Consensus 157 ~~~~~~~~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSSYREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHHHHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHHHHHHHcCCCCeEEEEEeCcc
Confidence 97653 588898864
No 154
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.7e-13 Score=130.24 Aligned_cols=316 Identities=17% Similarity=0.185 Sum_probs=211.4
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccC-CCcc--chHhHHHHhhcc----------------------------CCCCC
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARN-GSGK--TTCFVLGMLSRV----------------------------DPNLK 170 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~T-GsGK--Tl~~~l~il~~l----------------------------~~~~~ 170 (480)
..+|+.|.+.+..+.+. +|++..-.| +.|+ +-.|++.+++++ .++..
T Consensus 215 ~pltalQ~~L~~~m~~Y--rDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNY--RDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred CcchHHHHHHHHHHHhh--hhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 46899999999888887 887653322 2344 457888888887 12334
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCc-e--e------eEeecCCCCCccc-------c------------------
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGI-T--S------ECAVPTDSTNYVP-------I------------------ 216 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~-~--~------~~~~~~~~~~~~~-------~------------------ 216 (480)
.++||||||+|+-|..+...+..+..+..- + + .--+++....... .
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 689999999999999999888877332221 0 0 0001110000000 0
Q ss_pred ------cCCCCCCCeEEEeChHHHHHHHhcCc------cccCceEEEEEcCchhhhhh----------------------
Q 011667 217 ------SKRPPVTAQVVIGTPGTIKKWMSAKK------LGFSRLKILVYDEADHMLDE---------------------- 262 (480)
Q Consensus 217 ------~~~~~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~lViDEah~l~~~---------------------- 262 (480)
........+|+||+|-.|..++.+.. -.++++.++|||-||.|+.|
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 00122257899999999988887421 24788999999999988763
Q ss_pred -------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccc-------cEEEEE--EcC----ch
Q 011667 263 -------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES-------VKQYKV--YCP----DE 310 (480)
Q Consensus 263 -------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~----~~ 310 (480)
+++||+-..+.+..++...+.+..-............ +.|.+. .+. ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 8889998888888888777766533322222111111 112111 111 12
Q ss_pred hHHHHHHHHHHHHhcc--cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 311 LAKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
.....++...+.-... ....+|||.++.-.--++..+|.+..+....+|...++..-.++-+-|-.|...+|+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 2344444444433322 23567999999999999999999998988899988888888888899999999999999876
Q ss_pred c--cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC----ceeEEEEeeCCc
Q 011667 389 A--RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR----KGVVFNLLMDGD 444 (480)
Q Consensus 389 ~--~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~----~g~~~~l~~~~~ 444 (480)
. |-.+|.+|..||.|.+|..|.. ..+++.+.+|+.-.|+ .-.|.++|+.-|
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~F-----YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHF-----YSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHH-----HHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 5 8899999999999999955433 3445777777755442 346777887544
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.56 E-value=1.2e-12 Score=123.59 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHhcc--cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcc
Q 011667 311 LAKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG-LTQV-LISTD 386 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~i-Lv~T~ 386 (480)
..|++.|.+.++.+.+ ..-+.|||.+--...+.+.-.|.+.|+.|.-+.|+|++..|...++.|++. .+.| |++-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 3455666655544432 334679999999999999999999999999999999999999999999975 4555 56667
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC--CceeEEEEeeCCc
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGD 444 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~~ 444 (480)
+.+.-+++..+++|+++|+=|++.- --|..-|..|.| ++=+++.|+.++.
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaV--------e~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAV--------EWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cCceEeeechhceeEeecccccHHH--------HhhhhhhHHhhcCccceeEEEeehhcc
Confidence 8888899999999999998876533 234455555555 4667888988664
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.55 E-value=5.4e-14 Score=137.54 Aligned_cols=126 Identities=17% Similarity=0.325 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ-VLISTDVL 388 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~-iLv~T~~~ 388 (480)
+..|+..|-.++..+...++++|+|++.-+....+.++|..+++....+.|.....+|..++.+|....+- +|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 34556666666667767889999999999999999999999999999999999999999999999986655 47899999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc--eeEEEEeeCC
Q 011667 389 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK--GVVFNLLMDG 443 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~--g~~~~l~~~~ 443 (480)
+-||++..++.||.||..|++ ..-.|.+-|+.|.|+. -.++.+++..
T Consensus 1106 GLGINLTAADTViFYdSDWNP--------T~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNP--------TADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccccceEEEecCCCCc--------chhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999875 3356888999998864 4566677644
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=6e-14 Score=144.11 Aligned_cols=277 Identities=12% Similarity=0.024 Sum_probs=155.5
Q ss_pred EEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCC-ccc-ccCCCC
Q 011667 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN-YVP-ISKRPP 221 (480)
Q Consensus 144 lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 221 (480)
+..+.+|||||-.|+-.+-..+.. +.++|||+|...|+.|+.+.++..+.. ..+...+...+.. ... ......
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhC
Confidence 444446999999988877666654 568999999999999999999987642 2233344333222 222 223344
Q ss_pred CCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------------hheeeeccccHHHHHHH
Q 011667 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-----------------------EVLLFSATFNETVKNFV 278 (480)
Q Consensus 222 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-----------------------~~~~~SAT~~~~~~~~~ 278 (480)
....|+|+|-..+ ...+.++++|||||=|.-.- .+++-|||.+-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 4578999999766 34678999999999985321 17888999774433222
Q ss_pred HHHhcccceeeeccccc--cccccEEEEEEcCc--------h--hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHH
Q 011667 279 TRIVKDYNQLFVKKEEL--SLESVKQYKVYCPD--------E--LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~--~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~ 346 (480)
. ...+..+....... ....+ ..+.... . ......+.+.+.+..+.+ ++|||+|.+..+-.+..
T Consensus 312 ~--~g~~~~~~~~~~~~~~~~P~v--~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C 386 (665)
T PRK14873 312 E--SGWAHDLVAPRPVVRARAPRV--RALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLAC 386 (665)
T ss_pred h--cCcceeeccccccccCCCCeE--EEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEh
Confidence 2 11111111111100 11111 1111100 0 001123445566666566 99999998776554432
Q ss_pred HHHhC-------CC--------cEEEec---------------CC-C-----------------------CHHHHHHHHH
Q 011667 347 ALKDF-------GY--------EVTTIM---------------GA-T-----------------------IQEERDKIVK 372 (480)
Q Consensus 347 ~L~~~-------~~--------~~~~l~---------------~~-~-----------------------~~~~r~~~~~ 372 (480)
.=+.. +. +...+| +. + -..++..+++
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~ 466 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVD 466 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHH
Confidence 21110 00 000000 00 0 0113445778
Q ss_pred HHhcCCCcEEEEcc----ccccCCCCCCCCEEEEccCCCCCCC-CC---CCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 373 EFKDGLTQVLISTD----VLARGFDQQQVNLIVNYDPPVKHGK-HL---EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 373 ~f~~g~~~iLv~T~----~~~~Gldi~~v~~Vi~~~~p~~~~~-~~---~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
.|. ++.+|||+|. +++ ++++.|+..|....-.. +. ......+.|.+||+||.+..|.+++.. ..+
T Consensus 467 ~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~ 539 (665)
T PRK14873 467 TVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESS 539 (665)
T ss_pred hhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCC
Confidence 886 5899999999 555 36788776654311110 00 012333478899999988889988764 444
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.50 E-value=2e-13 Score=133.73 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHh-cccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHh--cCCCcE-EEEcc
Q 011667 311 LAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK--DGLTQV-LISTD 386 (480)
Q Consensus 311 ~~k~~~l~~~l~~~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~--~g~~~i-Lv~T~ 386 (480)
..|+......+... .....+++|...-......+...|...|+....+||.....+|..+++.|+ +|..+| |+.--
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 34555555444443 445667777776667777888899999999999999999999999999997 344455 55667
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEE--EEeeCCc
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF--NLLMDGD 444 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~--~l~~~~~ 444 (480)
..+-|||+-+.+|+|..|+-|++.. -.|.+-|.-|.|++..++ .|+....
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaL--------EqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPAL--------EQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred cCcceeeecccceEEEEecccCHHH--------HHHHHHHHHHhcccCceEEEEEEecCc
Confidence 7789999999999999999987644 568889999999765443 4555443
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.48 E-value=2.4e-12 Score=134.06 Aligned_cols=298 Identities=14% Similarity=0.090 Sum_probs=171.6
Q ss_pred CChHHHHhhcccccC----C--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILT----P--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~----~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
..+.+|-+|+..+.. . .+--++-.|.||+|||++ -.=|+..+.....+.+..|..-.|.|-.|.-+.+++-..
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 345688888876654 1 124578889999999997 455666777777777888888888888887777765422
Q ss_pred ccCceeeEeecC--------------------CCCCccc------------ccC-----------------CCCCCCeEE
Q 011667 197 HTGITSECAVPT--------------------DSTNYVP------------ISK-----------------RPPVTAQVV 227 (480)
Q Consensus 197 ~~~~~~~~~~~~--------------------~~~~~~~------------~~~-----------------~~~~~~~I~ 227 (480)
-..-...+++|+ ++..... ... ...-...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 111111111111 0000000 000 000135799
Q ss_pred EeChHHHHHHHhc---CccccC----ceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHh
Q 011667 228 IGTPGTIKKWMSA---KKLGFS----RLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIV 282 (480)
Q Consensus 228 v~Tp~~l~~~l~~---~~~~~~----~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~ 282 (480)
|||+..++..... +...+. .=+.|||||+|.+-. .++++|||+|+.+...+....
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFRAY 646 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 9999999877632 111111 125799999997533 389999999987655443211
Q ss_pred -----------ccc---cee---eeccccc----------------------------cccccEEEEEEcCch----hHH
Q 011667 283 -----------KDY---NQL---FVKKEEL----------------------------SLESVKQYKVYCPDE----LAK 313 (480)
Q Consensus 283 -----------~~~---~~~---~~~~~~~----------------------------~~~~~~~~~~~~~~~----~~k 313 (480)
..+ ..+ .+..... .+..-.-..+.++.. ...
T Consensus 647 ~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~ 726 (1110)
T TIGR02562 647 EAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENEST 726 (1110)
T ss_pred HHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHH
Confidence 111 111 1100000 000001112222221 111
Q ss_pred HHHHHHHH----HHh------cc--cCCcE---EEEeCchhhHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHH
Q 011667 314 VMVIRDRI----FEL------GE--KMGQT---IIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERDKIVK 372 (480)
Q Consensus 314 ~~~l~~~l----~~~------~~--~~~~~---lVf~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~ 372 (480)
...+.+.+ ..+ .. .++++ ||-+++++.+-.++..|-.. .+.+.+||+......|..+.+
T Consensus 727 ~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~ 806 (1110)
T TIGR02562 727 YLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIER 806 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHH
Confidence 11111111 111 11 12232 88888888888888887654 356889999998777766554
Q ss_pred HH----------------------hc----CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccc
Q 011667 373 EF----------------------KD----GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 426 (480)
Q Consensus 373 ~f----------------------~~----g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR 426 (480)
.. .+ +...|+|+|.+++.|+|+ +.+++|-- | .++.+.+||+||
T Consensus 807 ~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~--------~~~~sliQ~aGR 875 (1110)
T TIGR02562 807 RLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--P--------SSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--c--------CcHHHHHHHhhc
Confidence 42 12 356799999999999998 67877743 2 458889999999
Q ss_pred cccCCC
Q 011667 427 AGRFGR 432 (480)
Q Consensus 427 ~gR~g~ 432 (480)
+.|.|.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999774
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.42 E-value=1.3e-11 Score=125.52 Aligned_cols=274 Identities=16% Similarity=0.209 Sum_probs=168.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
.-.++.+|+|||||.+..-++-..+.. +..++|+|+-+++|+.+....++..+-. +.. .+...... ....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~--~i~~-- 119 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY--IIDG-- 119 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc--cccc--
Confidence 567999999999998855544444332 3568999999999999999988765321 211 11111100 0100
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-------------------------heeeeccccHHHH
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------------------------VLLFSATFNETVK 275 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-------------------------~~~~SAT~~~~~~ 275 (480)
...+-++++.+.|.++.. ..+.++++|||||+-..+.| ++++-|++....-
T Consensus 120 -~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 -RPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred -cccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 124577778888866542 24677999999999998876 5667777776666
Q ss_pred HHHHHHhcccceeeeccccccccccEEE-EEEcC-----------------------------------chhHHHHHHHH
Q 011667 276 NFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCP-----------------------------------DELAKVMVIRD 319 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------------------------------~~~~k~~~l~~ 319 (480)
+++..+......-.+.. .....+.... -..++ ........+ .
T Consensus 196 dFl~~~Rp~~~i~vI~n-~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~-~ 273 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVN-TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF-S 273 (824)
T ss_pred HHHHHhCCCCcEEEEEe-eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH-H
Confidence 66665433221111111 1000000000 00000 000111122 2
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC--C
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ--V 397 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~--v 397 (480)
.+......+.++-||++|...++.+++.....+.++..++|.-+..+. +. =++++|++-|.++.-|+++.. .
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhc
Confidence 244444577889999999999999999999999999999887665522 22 266899999999999999874 3
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEee
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~ 441 (480)
+-|+-|=-|...+ .++.+..|++||+-... ....++.+.
T Consensus 348 ~~~f~yvk~~~~g----pd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 348 DSMFAYVKPMSYG----PDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred eEEEEEecCCCCC----CcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 4455553342211 34556899999996654 445554553
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.41 E-value=2e-12 Score=132.12 Aligned_cols=307 Identities=18% Similarity=0.168 Sum_probs=196.0
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+|+. |..+|.-.--.+. ..-+.-+.||-|||++..+|+.-... .+..+.+++...-||.--..++..+...+
T Consensus 77 lg~~-~~dVQliG~i~lh----~g~iaEM~TGEGKTL~atlp~ylnaL---~gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 77 LGMR-HFDVQLLGGIVLH----LGDIAEMRTGEGKTLVATLPAYLNAL---AGKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred cCCC-hhhHHHhhhhhhc----CCceeeeecCCchHHHHHHHHHHHhc---CCCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 4544 5666665444443 34789999999999999888753322 35568999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh---------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE--------- 262 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~--------- 262 (480)
|+.+.+...+.... .++....++|.++|...| .+++.-+ ......+.+.|+||+|.++-.
T Consensus 149 GlsvG~~~~~m~~~----ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 149 GLSVGVILAGMSPE----EKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred CCceeeccCCCChH----HHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 99887776665332 233344689999999876 2333211 122446889999999987530
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence
Q ss_pred --------------------------------------------------------------heeeeccccHHHHHHHHH
Q 011667 263 --------------------------------------------------------------VLLFSATFNETVKNFVTR 280 (480)
Q Consensus 263 --------------------------------------------------------------~~~~SAT~~~~~~~~~~~ 280 (480)
..+|+.|......++..-
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 233344433333332222
Q ss_pred HhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecC
Q 011667 281 IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~ 360 (480)
+......+....... .....-........|+..+++.+......+.|+||-+.+++..+.+.+.|.+.+++...+..
T Consensus 385 Y~l~vv~iPTnrp~~---R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 385 YGLDVVVIPTNRPII---RLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred cCCceeeccCCCccc---CCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 221111111111111 12222222234567788888778888889999999999999999999999999999988887
Q ss_pred CCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCCCCE---EEEccCCCCCCCCCCCCcccccccccccccCCCceeE
Q 011667 361 ATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQQVNL---IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 436 (480)
Q Consensus 361 ~~~~~~r~~~~~~f~~g~~-~iLv~T~~~~~Gldi~~v~~---Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~ 436 (480)
.-...+-..+.. .|+. -|-|||++++||-||.--.. |.-.+--..-+..+..|-.---|-.||+||.|-+|.+
T Consensus 462 k~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 462 KNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred ccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 766444333333 3444 47899999999999863332 2111111000111113333335888999999999998
Q ss_pred EEEeeCC
Q 011667 437 FNLLMDG 443 (480)
Q Consensus 437 ~~l~~~~ 443 (480)
.-|++-.
T Consensus 539 ~F~lSle 545 (822)
T COG0653 539 RFYLSLE 545 (822)
T ss_pred hhhhhhH
Confidence 8666643
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.32 E-value=3.3e-11 Score=121.74 Aligned_cols=120 Identities=21% Similarity=0.268 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----------------------CCCcEEEecCCCCHHHHHHHH
Q 011667 314 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----------------------FGYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 314 ~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----------------------~~~~~~~l~~~~~~~~r~~~~ 371 (480)
+..|+++|....+-+.+.|||.+|......+..+|.. .|.....|.|......|.++.
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 3345554444445678999999999999999888864 255678899999999999999
Q ss_pred HHHhcCC----CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEE--EEee
Q 011667 372 KEFKDGL----TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF--NLLM 441 (480)
Q Consensus 372 ~~f~~g~----~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~--~l~~ 441 (480)
..|++-. ...||+|.+.+-|||+-.++.||+||..|++.+ -.|-|=|+.|.|+..-|| .|+.
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSy--------DtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSY--------DTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCcc--------chHHHHHHHhhcCcCceeehhhhh
Confidence 9998642 347999999999999999999999999998654 468888999999766555 4444
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=3.9e-12 Score=102.46 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=74.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhc-cCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSR-VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~-l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+-.++-.++|+|||.-.+.-++.. +.. +.++|||.|||.++..+.+.++.. .+......... .
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~---~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~---------~ 68 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKR---RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR---------T 68 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHT---T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHc---cCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec---------c
Confidence 667899999999999755544432 332 568999999999999988887654 22211111100 1
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh------------------hheeeeccccHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLFSATFNETV 274 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~ 274 (480)
...+.-|-|+|+..+...+.+ .....++++||+||||.... .++++|||.|...
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 112356899999999887766 55578999999999997543 2788999988543
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.25 E-value=3.3e-11 Score=132.10 Aligned_cols=125 Identities=23% Similarity=0.355 Sum_probs=103.9
Q ss_pred HHHHHHHHHH-HHhcccCC--cEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcc
Q 011667 312 AKVMVIRDRI-FELGEKMG--QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG--LTQVLISTD 386 (480)
Q Consensus 312 ~k~~~l~~~l-~~~~~~~~--~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g--~~~iLv~T~ 386 (480)
.+...+.+.+ ......+. ++|||++.......+...|...++....++|+++...|...++.|.++ ...+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666655 34554556 999999999999999999999998999999999999999999999986 445677888
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCce--eEEEEeeCCc
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD 444 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g--~~~~l~~~~~ 444 (480)
+++.|+++...++||+||+.|+ +....|...|+.|.|++. .++.|++...
T Consensus 772 agg~glnLt~a~~vi~~d~~wn--------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWN--------PAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccC--------hHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999999965 566889999999988765 4556666554
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.24 E-value=3.3e-10 Score=121.97 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011667 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (480)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (480)
.++..+|+..||||||+. ++.+...+......+.++|||-++.|-.|+.+.+..++....... ...+......
T Consensus 272 ~~~~G~IWHtqGSGKTlT-m~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~------~~~s~~~Lk~ 344 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLT-MFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP------KAESTSELKE 344 (962)
T ss_pred cCCceEEEeecCCchHHH-HHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc------cccCHHHHHH
Confidence 346799999999999997 333444444446678999999999999999999999876543321 1111111111
Q ss_pred CCC-CCCeEEEeChHHHHHHHhcCc--cccCceEEEEEcCchhhhh--------------hheeeecccc
Q 011667 219 RPP-VTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLD--------------EVLLFSATFN 271 (480)
Q Consensus 219 ~~~-~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~--------------~~~~~SAT~~ 271 (480)
.+. ....|+|+|-+.|-..+.... ..-.+=-+||+||||+--. ..++|++|+-
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~~a~~~gFTGTPi 414 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKALKKAIFIGFTGTPI 414 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHhccceEEEeeCCcc
Confidence 111 134799999999988876641 1122233789999998321 2788999864
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.16 E-value=1.5e-10 Score=110.25 Aligned_cols=125 Identities=21% Similarity=0.145 Sum_probs=74.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCC---CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccccc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNL---KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~---~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (480)
+.++++..+|+|||+..+..+. .+.... ....+|||||. .+..||..++.++......++....+.. ......
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~--~~~~~~ 101 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS--ERRRLS 101 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC--HHHHTT
T ss_pred CCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccc--cccccc
Confidence 6899999999999998555443 322211 12259999999 7889999999999864344443333332 011111
Q ss_pred CCCCCCCeEEEeChHHHH-----HHHhcCccccCceEEEEEcCchhhhhh---------------heeeecccc
Q 011667 218 KRPPVTAQVVIGTPGTIK-----KWMSAKKLGFSRLKILVYDEADHMLDE---------------VLLFSATFN 271 (480)
Q Consensus 218 ~~~~~~~~I~v~Tp~~l~-----~~l~~~~~~~~~~~~lViDEah~l~~~---------------~~~~SAT~~ 271 (480)
.......+++|+|++.+. .... .+.--++++||+||+|.+.+. .+++|||+-
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~ 173 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPI 173 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-S
T ss_pred ccccccceeeecccccccccccccccc--ccccccceeEEEecccccccccccccccccccccceEEeeccccc
Confidence 222335789999999998 1111 122235999999999998542 788999953
No 167
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.12 E-value=1.8e-10 Score=116.07 Aligned_cols=288 Identities=20% Similarity=0.268 Sum_probs=177.3
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCC--eEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCcccc
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP--QALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPI 216 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~--~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 216 (480)
++-+++.+.||.|||..+.--+|..+.....+. .+.+--|++..+..+++.+.+ -+...+-.+.+.....+.
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa----- 467 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSA----- 467 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccc-----
Confidence 378899999999999998888888876654332 234444999888777765543 222222221111111111
Q ss_pred cCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hheeeeccccHHHHHH
Q 011667 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVLLFSATFNETVKNF 277 (480)
Q Consensus 217 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~~~SAT~~~~~~~~ 277 (480)
.....--|+.||-+-+++.+.+. +..+.++++||.|...- ..+++|||+..+..
T Consensus 468 --~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f-- 540 (1282)
T KOG0921|consen 468 --TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLF-- 540 (1282)
T ss_pred --ccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhh--
Confidence 11112359999999999998874 34567899999997432 26677887665432
Q ss_pred HHHHhcccceee----------------------eccccccc------------cc--cEEEEEEcCch-----------
Q 011667 278 VTRIVKDYNQLF----------------------VKKEELSL------------ES--VKQYKVYCPDE----------- 310 (480)
Q Consensus 278 ~~~~~~~~~~~~----------------------~~~~~~~~------------~~--~~~~~~~~~~~----------- 310 (480)
..++.....+. +....... .. -+..-..+++.
T Consensus 541 -~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~ 619 (1282)
T KOG0921|consen 541 -TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSR 619 (1282)
T ss_pred -hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhc
Confidence 11111111110 00000000 00 00000011100
Q ss_pred ---hHHHHHHHHHHHHh---cccCCcEEEEeCchhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHhcC
Q 011667 311 ---LAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 311 ---~~k~~~l~~~l~~~---~~~~~~~lVf~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
.....-|.+.+... ..-.+-++||.+.....-.|+.+|... .+.+..+|+.....++.++++....|
T Consensus 620 ~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g 699 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG 699 (1282)
T ss_pred chhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc
Confidence 00011111212111 113467899999999999999988653 46789999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCCCCC----------CCCCCcccccccccccccCCCceeEEEEee
Q 011667 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK----------HLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441 (480)
Q Consensus 378 ~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~----------~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~ 441 (480)
..++++.|.++...+.+.++..||+.+.-+.... ..+.|.....||.||+||. ++|.|+.+.+
T Consensus 700 v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 700 VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 9999999999999999999888886443322111 1124556668999999996 7899988775
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=4.5e-10 Score=105.29 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=57.1
Q ss_pred cCCCCChHHHHhhc----ccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCC---CCeEEEEecCHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISL----PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK---APQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i----~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~---~~~~lil~Pt~~La~q~~~~~ 191 (480)
|.|. |+|.|.+.+ ..+..| .++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 5566 699999844 444455 899999999999999999999876543222 348999999999999987777
Q ss_pred HHH
Q 011667 192 RKM 194 (480)
Q Consensus 192 ~~~ 194 (480)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=4.5e-10 Score=105.29 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=57.1
Q ss_pred cCCCCChHHHHhhc----ccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCC---CCeEEEEecCHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISL----PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK---APQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i----~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~---~~~~lil~Pt~~La~q~~~~~ 191 (480)
|.|. |+|.|.+.+ ..+..| .++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 5566 699999844 444455 899999999999999999999876543222 348999999999999987777
Q ss_pred HHH
Q 011667 192 RKM 194 (480)
Q Consensus 192 ~~~ 194 (480)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.89 E-value=3.5e-09 Score=96.54 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=95.3
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+.....|+. |+++|.-++-.+..| -|+...||-|||++..+|+..... .|..|-|++.+..||..=++++..
T Consensus 69 a~~r~~g~~-p~~vQll~~l~L~~G----~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 69 AARRTLGLR-PYDVQLLGALALHKG----RLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp HHHHHTS-----HHHHHHHHHHHTT----SEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCCc-ccHHHHhhhhhcccc----eeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHH
Confidence 333335655 999999998777666 399999999999988877655433 356799999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHH-HHHhcC----c--cccCceEEEEEcCchhhhh
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK-KWMSAK----K--LGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~-~~l~~~----~--~~~~~~~~lViDEah~l~~ 261 (480)
+...+|+.+.+......... ++....++|+++|...|. ++|..+ . ...+.+.++||||||.++-
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~----r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEE----RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp HHHHTT--EEEEETTTEHHH----HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred HHHHhhhccccCccccCHHH----HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 99999999988876654221 111123689999999874 444321 1 1246789999999998764
No 171
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.75 E-value=5.4e-06 Score=82.62 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHHh----cCCCcEEEEc--cccccCCCC
Q 011667 328 MGQTIIFVRTKNSASALHKALKDFGY-------EVTTIMGATIQEERDKIVKEFK----DGLTQVLIST--DVLARGFDQ 394 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~~~-------~~~~l~~~~~~~~r~~~~~~f~----~g~~~iLv~T--~~~~~Gldi 394 (480)
.+.+++|++|.+-...+.+.+...|+ +-+.+-..-+ -..+++.|. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 37899999999999999988875433 2222222222 355666665 4554566554 788999999
Q ss_pred CC--CCEEEEccCCCCCCCC-------------CCC---C--------cccccccccccccCCCceeEEEEeeCCccHHH
Q 011667 395 QQ--VNLIVNYDPPVKHGKH-------------LEP---D--------CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 448 (480)
Q Consensus 395 ~~--v~~Vi~~~~p~~~~~~-------------~~~---s--------~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~ 448 (480)
.+ .+.||..++|+--... ... + +...-|-+|||-|.-++-.+|.|+........
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p~ 785 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARPL 785 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCch
Confidence 87 8899999999642111 010 1 11225889999998888888888754333333
Q ss_pred HHHHHHHhCCcc
Q 011667 449 MEKIERYFDIKV 460 (480)
Q Consensus 449 ~~~i~~~l~~~~ 460 (480)
.+.+-++++..+
T Consensus 786 ~RKLp~WI~~~v 797 (821)
T KOG1133|consen 786 SRKLPKWIRKRV 797 (821)
T ss_pred hhhccHHHHhHh
Confidence 444444443333
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.60 E-value=4.4e-08 Score=101.21 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=98.5
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
...|+|.+.+-.+..- ..+.++.+|||+|||++|.++++..+.... +.+++++.|-++|+..-...+.+.....|+++
T Consensus 927 ~fn~~q~~if~~~y~t-d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHT-DLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred ccCCccceEEEEEeec-chhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 4557888888777654 368999999999999999999988776654 46999999999999887776665544446655
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc--CccccCceEEEEEcCchhhhhh
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLDE 262 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~ 262 (480)
.-..+...... .....++|+|+||++...+..+ +.-.+.+++.+|+||.|++.+.
T Consensus 1005 ie~tgd~~pd~-----~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPDV-----KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCCh-----hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 44433332221 1122478999999999887763 4456789999999999998764
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.47 E-value=1.8e-07 Score=93.59 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=84.3
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhCCC------------------cEEEecCCCCHHHHHHHHHHHhcC--C-CcEEEEcc
Q 011667 328 MGQTIIFVRTKNSASALHKALKDFGY------------------EVTTIMGATIQEERDKIVKEFKDG--L-TQVLISTD 386 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~~~------------------~~~~l~~~~~~~~r~~~~~~f~~g--~-~~iLv~T~ 386 (480)
+.++|||..+......+.+.|.++.+ ....+.|..+..+|.+++++|++. - .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46889999999999889888876532 245778888999999999999853 2 24788999
Q ss_pred ccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEE
Q 011667 387 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438 (480)
Q Consensus 387 ~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~ 438 (480)
...-|+++-+.+-+|.||+-|++.. -.|.+-|+-|.|+...|++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpch--------daqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCH--------DAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred cccccceeeccceEEEEEeecCccc--------cchhhhhhhhhcCcCceeE
Confidence 9999999999999999999987544 5788999999998777664
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=1.5e-06 Score=91.65 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 224 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
..|+++||..|..-+-.+.+.++.+..|||||||++..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~ 45 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE 45 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc
Confidence 56999999999877777789999999999999999865
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.43 E-value=3e-07 Score=84.13 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=49.9
Q ss_pred ChHHHHhhcccccCCCCcc-EEEEccCCCccchHhHHHHhhcc------CCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 124 PSKIQAISLPMILTPPYRN-LIAQARNGSGKTTCFVLGMLSRV------DPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~-~lv~a~TGsGKTl~~~l~il~~l------~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+.+-|..|+..++.. .. .+|+||+|+|||.. +..++..+ .....+.++|+++|+...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~--~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSS--NGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTS--SE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcC--CCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 568899999999987 66 99999999999965 33344443 1234567899999999999999988877
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.43 E-value=2.9e-07 Score=97.00 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC--Cce-------eEEEEeeCCccHHH
Q 011667 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKG-------VVFNLLMDGDDMII 448 (480)
Q Consensus 378 ~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g-------~~~~l~~~~~~~~~ 448 (480)
..+.|++-.++.+|+|.|++-.++.+... .|...-.|.+||.-|.- +.| ..++++.+.....+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~--------~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dF 572 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSS--------GSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDF 572 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccC--------CchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHH
Confidence 56899999999999999999988888766 66777789999999942 222 23455555555555
Q ss_pred HHHHHHHh
Q 011667 449 MEKIERYF 456 (480)
Q Consensus 449 ~~~i~~~l 456 (480)
...+.+-+
T Consensus 573 a~~LQ~EI 580 (986)
T PRK15483 573 ASKLVGEI 580 (986)
T ss_pred HHHHHHHH
Confidence 55554444
No 177
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.39 E-value=4.6e-07 Score=77.89 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=72.5
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--ccccCCCCCC--CCEE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGY--EVTTIMGATIQEERDKIVKEFKDGLTQVLISTD--VLARGFDQQQ--VNLI 400 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~--~~~~Gldi~~--v~~V 400 (480)
..+++|||++|....+.+...+..... ....+.. ....+..+++.|+.+...||+++. .+.+|+|+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 458999999999999999999976531 1122222 356788899999999999999998 9999999996 8899
Q ss_pred EEccCCCCCCCCC----------------------CCCcccccccccccccCCCceeEEEEe
Q 011667 401 VNYDPPVKHGKHL----------------------EPDCEVYLHRIGRAGRFGRKGVVFNLL 440 (480)
Q Consensus 401 i~~~~p~~~~~~~----------------------~~s~~~y~qr~GR~gR~g~~g~~~~l~ 440 (480)
|..++|.-...+. +.......|.+||+-|...+-.++.++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 9999996443210 000111268899999976654455444
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.32 E-value=2.2e-06 Score=88.44 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=85.9
Q ss_pred CcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCC-CcE-EEEccccccCCCCCCCCEEEEccCC
Q 011667 329 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL-TQV-LISTDVLARGFDQQQVNLIVNYDPP 406 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~-~~i-Lv~T~~~~~Gldi~~v~~Vi~~~~p 406 (480)
.+++||++-...+..+...|...++....+.|.|+...|.+.+..|..+. ..+ +++.-+..-|+++..+.||+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999888999999999999999999999998543 334 5677888899999999999999877
Q ss_pred CCCCCCCCCCcccccccccccccCCCceeEE
Q 011667 407 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 437 (480)
Q Consensus 407 ~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~ 437 (480)
| ++..--|.+-|+.|.|+.-.+.
T Consensus 620 w--------np~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 620 W--------NPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred c--------ChHHHHHHHHHHHHhcccceee
Confidence 4 5677789999999988755443
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.16 E-value=6.6e-06 Score=72.74 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=97.3
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.+|+....|..++=.+. .++. .++.|.+....+.+. .+.+.+.+.-+|.|||.+ ++|++..+..... .-+.++|
T Consensus 3 ~~w~p~~~P~wLl~E~e--~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~-~LvrviV 77 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE--SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS-RLVRVIV 77 (229)
T ss_pred CCCCchhChHHHHHHHH--cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-cEEEEEc
Confidence 36777777888877774 3665 889999988887763 237899999999999988 8888887665433 3556667
Q ss_pred cCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCccc-----c---cCCCCCCCeEEEeChHHHHHHHhc-------Cc
Q 011667 179 PTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVP-----I---SKRPPVTAQVVIGTPGTIKKWMSA-------KK 242 (480)
Q Consensus 179 Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~I~v~Tp~~l~~~l~~-------~~ 242 (480)
|. +|..|..+.+.. ++.-.+-.+...--........ . .........|+++||+.++.+.-. +.
T Consensus 78 pk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~ 156 (229)
T PF12340_consen 78 PK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGK 156 (229)
T ss_pred CH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcC
Confidence 74 699999988875 4433343332222111111100 0 001112346999999987544211 11
Q ss_pred c-----------ccCceEEEEEcCchhhhh
Q 011667 243 L-----------GFSRLKILVYDEADHMLD 261 (480)
Q Consensus 243 ~-----------~~~~~~~lViDEah~l~~ 261 (480)
. .+.....=|+||+|.++.
T Consensus 157 ~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 157 PEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 123344568899987766
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.10 E-value=1.9e-06 Score=76.12 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=46.1
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
+++-|.+++..++.+..+-+++.|+.|+|||.+ +-.+...+... +.++++++||...+..+.+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHh
Confidence 678899999999866435688999999999985 33344444432 46899999999888775554
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.08 E-value=1.2e-05 Score=79.85 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=58.9
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.|+.++..-|..|+.++|+. .-.|++||+|+|||..... |+.++... .+..+||++|+...+.|+++.+.+-
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~r--plsLIQGPPGTGKTvtsa~-IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQR--PLSLIQGPPGTGKTVTSAT-IVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred CCchhhchHHHHHHHHHHcC--CceeeecCCCCCceehhHH-HHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc
Confidence 57778899999999999998 8899999999999987444 33343333 3558999999999999999888775
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.02 E-value=9.3e-06 Score=78.96 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=64.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+-++|.|..|||||+.. +-++..+.....+..++++|+...|...+...+...... .
T Consensus 2 ~v~~I~G~aGTGKTvla-~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-----------~----------- 58 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLA-LNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-----------K----------- 58 (352)
T ss_pred eEEEEEecCCcCHHHHH-HHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-----------c-----------
Confidence 45899999999999873 334444422334668999999999988877776554200 0
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
.....+..+..+...+.........+++|||||||++..
T Consensus 59 --~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 --LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 012344555555544432233466899999999999887
No 183
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.98 E-value=0.00014 Score=70.51 Aligned_cols=115 Identities=11% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhCCCc--E----EEecCCCCHHHHHHHHHHHh----cCCCcEE--EEccccccCCCCC
Q 011667 328 MGQTIIFVRTKNSASALHKALKDFGYE--V----TTIMGATIQEERDKIVKEFK----DGLTQVL--ISTDVLARGFDQQ 395 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~----~~l~~~~~~~~r~~~~~~f~----~g~~~iL--v~T~~~~~Gldi~ 395 (480)
.+.+++|+++.--.+.+.......|+- + ..+-+.-+..+-.-+++.++ +|.--|| |+-.-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 356789999988888877766655431 1 23333333344445555554 4444455 6667889999999
Q ss_pred CCC--EEEEccCCCCCCCC-------------CCCCcccc---------cccccccccCCCceeEEEEeeCC
Q 011667 396 QVN--LIVNYDPPVKHGKH-------------LEPDCEVY---------LHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 396 ~v~--~Vi~~~~p~~~~~~-------------~~~s~~~y---------~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+.- .||+++.|+.-... ......+| .|-.||+-|. +.-..+.++.++
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDk 680 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADK 680 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeeh
Confidence 866 99999999643110 00111222 4788999994 555666666543
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.96 E-value=5.6e-05 Score=69.49 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=87.6
Q ss_pred cCCCCHHHHHHHHhhcCCCCChHHHHhhccccc-------CC-CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEE
Q 011667 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL-------TP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (480)
Q Consensus 104 ~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il-------~~-~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~l 175 (480)
.+.|++.++..- .++..|.+++-.+. .+ .....++-..||.||--...--|+...... ..++|
T Consensus 25 ~~~lp~~~~~~g-------~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~v 95 (303)
T PF13872_consen 25 RLHLPEEVIDSG-------LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAV 95 (303)
T ss_pred ccCCCHHHHhcc-------cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CCceE
Confidence 346666555321 24577776664333 22 225788999999999987555566655543 33699
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC---ccc------c-
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK---KLG------F- 245 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~------~- 245 (480)
+++.+..|-....+.++.++.. .+.+..+...... ......-.|+++|+..|...-..+ ... +
T Consensus 96 wvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 96 WVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred EEECChhhhhHHHHHHHHhCCC-cccceechhhccC------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 9999999999999999988754 3332222211100 111123469999999987764321 111 1
Q ss_pred --CceEEEEEcCchhhhh
Q 011667 246 --SRLKILVYDEADHMLD 261 (480)
Q Consensus 246 --~~~~~lViDEah~l~~ 261 (480)
..=.+||+||||.+.+
T Consensus 169 g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKN 186 (303)
T ss_pred hcCCCceEEeccchhcCC
Confidence 1225899999999877
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=97.95 E-value=1.6e-05 Score=57.97 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=36.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC-CCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
+-+++.||+|||||...+-.+...+. ....+.+++|++|++..+..+.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55667999999999664444444442 1122668999999999999888777
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.80 E-value=2.9e-05 Score=76.67 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=51.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.+.+-|++|+...++.. .-.++.||+|+|||.....-|.+.+.. +.++||..||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k-~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNK-DLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccC-CceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHh
Confidence 46688999999888763 567899999999999855555555544 458999999999988888754
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.79 E-value=8.9e-06 Score=71.36 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.1
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
...++-|..++..++.. ..+++.||.|+|||+.++..+++.+.. ..-.+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~--~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNN--DLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH---SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCC
Confidence 44678899999999966 899999999999999988888887765 344577777787653
No 188
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00034 Score=69.10 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=58.7
Q ss_pred EEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH-HhcccCceeeEeecCCCCCccccc--CCCC
Q 011667 145 AQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPIS--KRPP 221 (480)
Q Consensus 145 v~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 221 (480)
..+.||||||++..-.||.....+- ...|+.|.......-....+.. .....-..-...+++......... ....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 3578999999987767776655432 2467777655444443322211 000000000011111111110000 0123
Q ss_pred CCCeEEEeChHHHHHHHhc---Cccc---cCceE-EEEEcCchhhhh
Q 011667 222 VTAQVVIGTPGTIKKWMSA---KKLG---FSRLK-ILVYDEADHMLD 261 (480)
Q Consensus 222 ~~~~I~v~Tp~~l~~~l~~---~~~~---~~~~~-~lViDEah~l~~ 261 (480)
.+..|+++|.+.|...+.+ +.+. +.+.. +++-||||++-.
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 3568999999999776654 2333 33344 456799999865
No 189
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.64 E-value=0.0001 Score=75.58 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=52.1
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccC--CCceeEE----------EEeeCCc
Q 011667 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF--GRKGVVF----------NLLMDGD 444 (480)
Q Consensus 377 g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~--g~~g~~~----------~l~~~~~ 444 (480)
...++|++-.++-+|+|=|+|=.++-+... .|..+=.|.+||.-|. +..|.-+ +++.+.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S--------~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~s 553 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSS--------GSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNES 553 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCC--------CcchHHHHHhccceeeeeccccceecccccccceEEEEeccc
Confidence 346899999999999999999999888776 6778889999999994 2445433 2444455
Q ss_pred cHHHHHHHHHH
Q 011667 445 DMIIMEKIERY 455 (480)
Q Consensus 445 ~~~~~~~i~~~ 455 (480)
+..+++.+.+-
T Consensus 554 ek~Fv~~LqkE 564 (985)
T COG3587 554 EKDFVKALQKE 564 (985)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.60 E-value=9.4e-05 Score=76.11 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred CcEEEEeCchhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHhc--------CCCcEEEEccccccCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKD--------GLTQVLISTDVLARGFD 393 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~--------g~~~iLv~T~~~~~Gld 393 (480)
..+|||+++....+.+...+... +++-..+ .=-+...-.+++..|.+ |..-..||-.-.++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 45899999998888875554331 1221111 11133344455555543 23345678888999999
Q ss_pred CCC--CCEEEEccCCCCCCCCC-----------CCC-------------------cccccccccccccCCCceeEEEEee
Q 011667 394 QQQ--VNLIVNYDPPVKHGKHL-----------EPD-------------------CEVYLHRIGRAGRFGRKGVVFNLLM 441 (480)
Q Consensus 394 i~~--v~~Vi~~~~p~~~~~~~-----------~~s-------------------~~~y~qr~GR~gR~g~~g~~~~l~~ 441 (480)
+.+ .+.||..++|+-+.-+. .++ ....-|.+||+-|..++-.++.|+.
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 985 67899999886553220 011 1122588999999776655665664
No 191
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.49 E-value=0.00041 Score=57.49 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=58.0
Q ss_pred EEecCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCC--CCEEEEccCCCCCCCCC-------------------
Q 011667 356 TTIMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQQ--VNLIVNYDPPVKHGKHL------------------- 413 (480)
Q Consensus 356 ~~l~~~~~~~~r~~~~~~f~~g~-~~iLv~T~~~~~Gldi~~--v~~Vi~~~~p~~~~~~~------------------- 413 (480)
..+.-+....+...+++.|+... ..||+++..+++|+|+|+ ++.||..++|+-...+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34444455556788999998754 379999988999999997 67899999886432210
Q ss_pred ----CCCcccccccccccccCCCceeEEEEe
Q 011667 414 ----EPDCEVYLHRIGRAGRFGRKGVVFNLL 440 (480)
Q Consensus 414 ----~~s~~~y~qr~GR~gR~g~~g~~~~l~ 440 (480)
+.......|.+||+-|...+-.++.++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 001233368899999976554455444
No 192
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.46 E-value=0.00019 Score=68.72 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=52.9
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-CCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
+++-|.+++.. .. ..++|.|..|||||.+.+--++..+... ....++|++++|+..+..+..++......
T Consensus 1 l~~eQ~~~i~~-~~---~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE---GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS--S---SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CC---CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 46789999987 44 6899999999999998655555544433 45668999999999999999998886543
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.45 E-value=0.00034 Score=72.25 Aligned_cols=68 Identities=24% Similarity=0.196 Sum_probs=49.7
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC--CCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--NLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~--~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.++|+.|+...+.+ +-+++.|++|+|||.+. ..++..+.. .....+++++.||...|..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~~--~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALTR--RISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 58999999999987 89999999999999862 223333221 1223578888999988888777665543
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.43 E-value=0.00024 Score=73.12 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=48.9
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC---CCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~---~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.++|+.|+..++.+ +-+++.|+.|+|||.+ +..++..+. ......++++.+||--.|..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~--~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKS--NFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhC--CeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 37999999999998 8999999999999985 223333222 1111357899999988887777766553
No 195
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.38 E-value=0.00045 Score=57.32 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCC---cEEEecCCCCHHHHHHHHHHHhcCCC---cEEEEccc--cccCCCCCC--CCEEEEccCCCCCC
Q 011667 341 ASALHKALKDFGY---EVTTIMGATIQEERDKIVKEFKDGLT---QVLISTDV--LARGFDQQQ--VNLIVNYDPPVKHG 410 (480)
Q Consensus 341 ~~~l~~~L~~~~~---~~~~l~~~~~~~~r~~~~~~f~~g~~---~iLv~T~~--~~~Gldi~~--v~~Vi~~~~p~~~~ 410 (480)
.+.++..+...+. ....+.-+....+...+++.|++... .||+++.- +++|+|+|+ ++.||..++|.-..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554332 12223223333455788888987543 68888876 999999997 68999999996543
Q ss_pred CCC-----------------------CCCcccccccccccccCCCceeEEEEe
Q 011667 411 KHL-----------------------EPDCEVYLHRIGRAGRFGRKGVVFNLL 440 (480)
Q Consensus 411 ~~~-----------------------~~s~~~y~qr~GR~gR~g~~g~~~~l~ 440 (480)
.+. +.......|.+||.-|...+-.+++|+
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 210 001122368899999977655555555
No 196
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.34 E-value=2.2e-05 Score=80.32 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhc---CCCcEEEEcccc
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD---GLTQVLISTDVL 388 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---g~~~iLv~T~~~ 388 (480)
.+...|...+..+.+.++|++||..-....+.+..++...+ ....+.|......|+.++++|+. .+..+|++|...
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 44455555566666788999999999999999999998888 88999999999999999999983 356688999887
Q ss_pred ccC
Q 011667 389 ARG 391 (480)
Q Consensus 389 ~~G 391 (480)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 655
No 197
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.30 E-value=0.00067 Score=71.96 Aligned_cols=66 Identities=18% Similarity=0.095 Sum_probs=47.3
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
.++ .+++-|+.|+..++.+ +.+++.|+.|+|||.+ +-.++..+........+++++||-..|..+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~--~~~iitGgpGTGKTt~-l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQH--KVVILTGGPGTGKTTI-TRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhC--CeEEEECCCCCCHHHH-HHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 454 5899999999999887 8999999999999985 2334443332211246788889987776443
No 198
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.004 Score=60.69 Aligned_cols=57 Identities=25% Similarity=0.183 Sum_probs=32.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc-CCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV-DPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l-~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
+.+++.||||+|||.+..-.+.... .....+.++.+++ +.|.-+..+ ++.++...++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgv 234 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGI 234 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCc
Confidence 6899999999999986433222211 1112344565555 556555443 5555544444
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.06 E-value=0.0025 Score=67.96 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=50.3
Q ss_pred CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 107 l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
+++..+..... .++ .+++-|..|+..++.+ .+-+++.|+.|+|||.. +-.+...+.. .+.++++++||--.+..
T Consensus 338 ~~~~~~~~~l~-~~~-~Ls~~Q~~Av~~i~~s-~~~~il~G~aGTGKTtl-l~~i~~~~~~--~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAID-QHY-RLSEEQYEAVRHVTGS-GDIAVVVGRAGTGKSTM-LKAAREAWEA--AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHh-ccC-CCCHHHHHHHHHHhcC-CCEEEEEecCCCCHHHH-HHHHHHHHHh--CCCeEEEEeCcHHHHHH
Confidence 44444444332 233 4789999999999875 26789999999999975 2233333322 25678999999766554
Q ss_pred H
Q 011667 187 N 187 (480)
Q Consensus 187 ~ 187 (480)
+
T Consensus 412 L 412 (744)
T TIGR02768 412 L 412 (744)
T ss_pred H
Confidence 3
No 200
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.99 E-value=0.00082 Score=60.88 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHHHhc-ccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCc
Q 011667 169 LKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (480)
Q Consensus 169 ~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 247 (480)
...|.+||||.+---|..+.+.++.+.. ...+ .-+..---.-............+|.||||+|+..+++.+.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v--~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKV--AKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchH--HHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 3467899999987778888888887732 1111 000000000000011111224789999999999999999999999
Q ss_pred eEEEEEcCch
Q 011667 248 LKILVYDEAD 257 (480)
Q Consensus 248 ~~~lViDEah 257 (480)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999766
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.85 E-value=0.00068 Score=63.39 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=51.4
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
.|+..-.-.|.-|+..++...-.-|.+.|+.|||||+.++.+.+........-.+++|.=|+..+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 688877788999999999875556889999999999988888877765555555677766876543
No 202
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.84 E-value=0.025 Score=59.98 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=79.9
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
.+..+....|.......+......+.++||.++++..+..+.+.|.+ .+..+..+||+++..+|...+.....|..+|+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IV 245 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVV 245 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 44445566777666555555555677899999999999999999976 47889999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccC
Q 011667 383 ISTDVLARGFDQQQVNLIVNYDP 405 (480)
Q Consensus 383 v~T~~~~~Gldi~~v~~Vi~~~~ 405 (480)
|+|..+.. +.+.++.+||.-+.
T Consensus 246 VgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 246 IGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred EeccHHhc-ccccCCCEEEEECC
Confidence 99975432 55678888886543
No 203
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.75 E-value=0.0024 Score=66.81 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
.+.+.|..|+..++... ..+++.||+|+|||....-.+.+.+.. +.++|+++||...+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSK-DLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCC-CeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46889999999988642 578999999999997643333333332 45899999999999998888876
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.71 E-value=0.00073 Score=55.42 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=12.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.|++|+|||...
T Consensus 5 ~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLI 21 (131)
T ss_dssp --EEEEE-TTSSHHHHH
T ss_pred cccEEEcCCCCCHHHHH
Confidence 67999999999999863
No 205
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.68 E-value=0.0042 Score=65.05 Aligned_cols=141 Identities=18% Similarity=0.079 Sum_probs=85.0
Q ss_pred cCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 104 ~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
...+.|.+.+... ..+..-|++|+-.+++.. ...++.|=+|+|||......+ ..+.. .+.++|+.+-|...
T Consensus 655 ~~~~~p~~~~~~~-----~~LN~dQr~A~~k~L~ae-dy~LI~GMPGTGKTTtI~~LI-kiL~~--~gkkVLLtsyThsA 725 (1100)
T KOG1805|consen 655 SKVLIPKIKKIIL-----LRLNNDQRQALLKALAAE-DYALILGMPGTGKTTTISLLI-KILVA--LGKKVLLTSYTHSA 725 (1100)
T ss_pred ccccCchhhHHHH-----hhcCHHHHHHHHHHHhcc-chheeecCCCCCchhhHHHHH-HHHHH--cCCeEEEEehhhHH
Confidence 4456666666322 246788999999888762 567889999999998633322 22221 25589999999988
Q ss_pred HHHHHHHHHHHhcccCceeeEeecCCCC----------------CcccccCCCCCCCeEEEeChHHHHHHHhcCccccCc
Q 011667 184 AIQNLEVLRKMGKHTGITSECAVPTDST----------------NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (480)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 247 (480)
+..+.-.++.+... + .-.|.... ......+.....+.|+.+|--.+.+.+- ..+.
T Consensus 726 VDNILiKL~~~~i~----~-lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~ 796 (1100)
T KOG1805|consen 726 VDNILIKLKGFGIY----I-LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQ 796 (1100)
T ss_pred HHHHHHHHhccCcc----e-eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccc
Confidence 88877766654321 1 00111110 0000111222346788888655543322 3456
Q ss_pred eEEEEEcCchhhhhh
Q 011667 248 LKILVYDEADHMLDE 262 (480)
Q Consensus 248 ~~~lViDEah~l~~~ 262 (480)
+++.|+|||-++...
T Consensus 797 FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 797 FDYCIIDEASQILLP 811 (1100)
T ss_pred cCEEEEccccccccc
Confidence 899999999998763
No 206
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.63 E-value=0.002 Score=53.23 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=25.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
+.+++.||+|+|||..... ++..+.... ..++++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 7899999999999986332 333332211 246777766533
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.61 E-value=0.0042 Score=67.41 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=44.7
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
.+++-|..++..++.+. .-+++.|..|+|||.+ +-.+...+.. .+.+++.++||--.|..
T Consensus 346 ~Ls~eQr~Av~~il~s~-~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 346 VLSGEQADALAHVTDGR-DLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAEN 405 (988)
T ss_pred CCCHHHHHHHHHHhcCC-CeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHH
Confidence 48999999999999862 4678999999999985 3334333332 25678999999865544
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.58 E-value=0.0095 Score=65.23 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 106 ~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
++++..+..... .+ ..+++-|..++..+..+ .+-+++.|+.|+|||.+ +-++...+.. .+.+++.+.||-.-+.
T Consensus 366 ~v~~~~l~a~~~-~~-~~Ls~eQ~~Av~~i~~~-~r~~~v~G~AGTGKTt~-l~~~~~~~e~--~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFA-RH-ARLSDEQKTAIEHVAGP-ARIAAVVGRAGAGKTTM-MKAAREAWEA--AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHh-cC-CCCCHHHHHHHHHHhcc-CCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEEcCcHHHHH
Confidence 455655555543 23 35899999999988654 37899999999999986 3334443332 3568899999976665
Q ss_pred HH
Q 011667 186 QN 187 (480)
Q Consensus 186 q~ 187 (480)
.+
T Consensus 440 ~L 441 (1102)
T PRK13826 440 GL 441 (1102)
T ss_pred HH
Confidence 43
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.54 E-value=0.045 Score=64.51 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=48.6
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
.+++-|..++..++....+-.++.|+.|+|||.+ +-.++..+.. .+.++++++||..-+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHH
Confidence 4789999999999986557899999999999985 3334333332 356899999998766665543
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.53 E-value=0.0018 Score=56.92 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=24.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
.-.++.||+|+|||...+- ++.++.. .+.+++++-|.
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~--~g~~v~i~k~~ 39 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEE--RGMKVLVFKPA 39 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHH--cCCeEEEEecc
Confidence 5678999999999976433 3333322 24578887663
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.52 E-value=0.0033 Score=57.55 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhh
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLS 163 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~ 163 (480)
+.+|+++--...++..|.+ .+ ..+...+.+..||.|+|||-++.+..-+
T Consensus 32 Pkt~de~~gQe~vV~~L~~--------a~--------~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKN--------AL--------LRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred CCcHHhhcchHHHHHHHHH--------HH--------hhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 4566666666667766665 11 1222378999999999999876554433
No 212
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.52 E-value=0.0075 Score=63.85 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=53.2
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.+++-|.+++... . ..++|.|..|||||.+...-+...+.. ...+.++|+|+.|+..|..+.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~-~---g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV-T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC-C---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3678999998753 2 468899999999999855545444432 34456899999999999999998887643
No 213
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.51 E-value=0.022 Score=60.49 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=78.6
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
..+.-+....|.....-.+......+.+++|.++++.-|...++.+.. .++.+..+||+++..+|..++..+.+|.
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE 364 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 345556666676554433444444677899999999999988777654 4789999999999999999999999999
Q ss_pred CcEEEEcc-ccccCCCCCCCCEEEE
Q 011667 379 TQVLISTD-VLARGFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~~~Gldi~~v~~Vi~ 402 (480)
.+|+|+|. .+...+.+.++.+||.
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEE
Confidence 99999996 4555677888998885
No 214
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.50 E-value=0.0054 Score=66.02 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC---------------CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---------------LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~---------------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 205 (480)
.++++.-..|+|||.+-+...+..+... ...+.+|||||. ++..||..++.+-.... +.+...
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~Y 452 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLLY 452 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEEE
Confidence 6789999999999997665554443110 112358999998 46789999998876654 555555
Q ss_pred ecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc
Q 011667 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA 240 (480)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 240 (480)
.|......... .....+|||++|+..|...+..
T Consensus 453 ~Girk~~~~~~--~el~~yDIVlTtYdiLr~El~h 485 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--FELLQYDIVLTTYDILRNELYH 485 (1394)
T ss_pred echhhhcccCc--hhhhccCEEEeehHHHHhHhhc
Confidence 55444333222 2223589999999999766643
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.50 E-value=0.037 Score=53.34 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=60.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC-HHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT-RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+.+.+.||||.|||....=.+........+...+||-+-| |.=|. ++++.++.-+++.+
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~---EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV---EQLKTYADIMGVPL----------------- 263 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH---HHHHHHHHHhCCce-----------------
Confidence 8999999999999985332222222122333344555543 54333 34555555444432
Q ss_pred CCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh-------------------hhheeeecccc-HHHHHHHH
Q 011667 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-------------------DEVLLFSATFN-ETVKNFVT 279 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~-------------------~~~~~~SAT~~-~~~~~~~~ 279 (480)
.++-+|.-|...+.. +.++++|.||=+-+=. .-.+.+|||.. .++...+.
T Consensus 264 ------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 ------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 455566666555543 4555666666554311 01567888876 44444444
Q ss_pred HH
Q 011667 280 RI 281 (480)
Q Consensus 280 ~~ 281 (480)
.|
T Consensus 334 ~f 335 (407)
T COG1419 334 QF 335 (407)
T ss_pred Hh
Confidence 44
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.011 Score=57.13 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.3
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
..+++.||||+|||....-
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 7899999999999986443
No 217
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.31 E-value=0.0029 Score=54.12 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=49.3
Q ss_pred EEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCC
Q 011667 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT 223 (480)
Q Consensus 144 lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (480)
++.|+-|-|||.+..+.+...+... ..+++|..|+.+-++.+++.+..-....+.+.... .............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK-----KRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhccccccccccc-----ccccccccccccc
Confidence 5789999999987555444443332 24788889999888887776665544443322000 0000000111113
Q ss_pred CeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----------hheeeecccc
Q 011667 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------EVLLFSATFN 271 (480)
Q Consensus 224 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------~~~~~SAT~~ 271 (480)
..|-+..|..+... -...+++|||||=.+-- ..++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~p~L~~ll~~~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE-------KPQADLLIVDEAAAIPLPLLKQLLRRFPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS-HHHHHHHHCCSSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC-------cCCCCEEEEechhcCCHHHHHHHHhhCCEEEEEeecc
Confidence 45777778766332 12357899999986533 2678888865
No 218
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=0.027 Score=57.43 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
...|.......+......++++||.++++..+..+++.|.+. +..+..+||+++..+|...+....+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 445655555545555556778999999999999999999764 7789999999999999999999999999999999754
Q ss_pred ccCCCCCCCCEEEEcc
Q 011667 389 ARGFDQQQVNLIVNYD 404 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~ 404 (480)
.. .-+.++.+||.-.
T Consensus 87 lf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPFKNLGLIIVDE 101 (505)
T ss_pred Hc-CcccCCCEEEEEC
Confidence 32 4566888888544
No 219
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.28 E-value=0.016 Score=48.03 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 20 ~~v~i~G~~G~GKT~l 35 (151)
T cd00009 20 KNLLLYGPPGTGKTTL 35 (151)
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
No 220
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.25 E-value=0.013 Score=53.96 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCcEEEEccccccCCCCCC--------CCEEEEccCCCCCCCCCCCCcccccccccccccCCC-ceeEEE
Q 011667 368 DKIVKEFKDGLTQVLISTDVLARGFDQQQ--------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFN 438 (480)
Q Consensus 368 ~~~~~~f~~g~~~iLv~T~~~~~Gldi~~--------v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~-~g~~~~ 438 (480)
....+.|.+|+..|+|.|+.++.|+.+.. -++-|.+.+|| |....+|..||+.|.|+ ..-.|.
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pw--------sad~aiQ~~GR~hRsnQ~~~P~y~ 122 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPW--------SADKAIQQFGRTHRSNQVSAPEYR 122 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCC--------CHHHHHHHhccccccccccCCEEE
Confidence 35667899999999999999999998863 34566788994 68889999999999986 455566
Q ss_pred EeeC
Q 011667 439 LLMD 442 (480)
Q Consensus 439 l~~~ 442 (480)
++..
T Consensus 123 ~l~t 126 (278)
T PF13871_consen 123 FLVT 126 (278)
T ss_pred Eeec
Confidence 6553
No 221
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.24 E-value=0.0085 Score=58.52 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=40.8
Q ss_pred ChHHHHhhcccc------cCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 124 PSKIQAISLPMI------LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 124 p~~~Q~~~i~~i------l~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
+++-|+.++..+ ..+ ..+++.|+-|+|||+.+ -.+...+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~--~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEG--LNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCC--cEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHHHhc
Confidence 456677777666 445 89999999999999852 223333333 355788999998666554
No 222
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.21 E-value=0.016 Score=61.81 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=52.2
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
+++-|.+++... . .+++|.|..|||||.+.+--+...+.. .....++|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~~--~--~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV--T--GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 678899988643 2 579999999999999855555555533 3345689999999999999998887754
No 223
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.07 E-value=0.046 Score=57.64 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=76.9
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 379 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 379 (480)
.+.-+....|.....-.+......+.+++|.++++.-|..+++.+.+ .++++..++|+++..+|..+++...+|+.
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 44455566666544333444444677999999999999988877654 37899999999999999999999999999
Q ss_pred cEEEEccc-cccCCCCCCCCEEEE
Q 011667 380 QVLISTDV-LARGFDQQQVNLIVN 402 (480)
Q Consensus 380 ~iLv~T~~-~~~Gldi~~v~~Vi~ 402 (480)
+|+|+|.. +...+.+.++.+||.
T Consensus 340 ~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 340 HLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CEEEecHHHHhccccccccceEEE
Confidence 99999964 445677888888885
No 224
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.96 E-value=0.013 Score=53.73 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~ 169 (480)
+..+.+|+++++|+-+.+.+.. | . .=++|.||||||||.. +.+++.++....
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------~-------------~--GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------P-------------R--GLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------C-------------C--ceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 4568899999999888773322 1 1 3689999999999987 677888887654
No 225
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.92 E-value=0.06 Score=58.71 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=78.8
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
..+..+....|.......++.....+.+++|.+++...|...+..+... ++.+..++|..+..++..+++.++.|+
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 3555566667765544434444445689999999999999998877653 678899999999999999999999999
Q ss_pred CcEEEEcc-ccccCCCCCCCCEEEE
Q 011667 379 TQVLISTD-VLARGFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~~~Gldi~~v~~Vi~ 402 (480)
.+|+|+|. .+...+.+.++.+||.
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEe
Confidence 99999996 4556788888998885
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.048 Score=54.19 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.4
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+.+++.||||+|||....
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 688999999999997543
No 227
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.88 E-value=0.032 Score=55.94 Aligned_cols=93 Identities=26% Similarity=0.238 Sum_probs=56.7
Q ss_pred cCCCCHHHHHHHHhhcCCCCChH----HHHhhcccccCCCCccEEEEccCCCccchHhHHHH---hhccCCCCCCCeEEE
Q 011667 104 DLNLSPELLKGLYVEMKFQKPSK----IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM---LSRVDPNLKAPQALC 176 (480)
Q Consensus 104 ~~~l~~~l~~~l~~~~~~~~p~~----~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~i---l~~l~~~~~~~~~li 176 (480)
+.++.++++....++.--.+++. +|.+--..|-...+.-++|+|..|||||.+++-=+ +........+..+||
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 45666666655444232223322 34443333333334689999999999998744322 222233334556999
Q ss_pred EecCHHHHHHHHHHHHHHhc
Q 011667 177 ICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~ 196 (480)
+.|.+.+..-+...+-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999888888877754
No 228
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.87 E-value=0.027 Score=52.89 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=44.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (480)
+.++++||||+|||....-.+. .+.....+.++.++. |.+.-+. +.+..++...++.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~-~~~~~~g~~~V~li~~D~~r~~a~---eql~~~~~~~~~p~---------------- 254 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAA-RFVLEHGNKKVALITTDTYRIGAV---EQLKTYAKILGVPV---------------- 254 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHHcCCCeEEEEECCccchhHH---HHHHHHHHHhCCce----------------
Confidence 6889999999999986433222 222111123555554 4443332 23333333222211
Q ss_pred CCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCc
Q 011667 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (480)
Q Consensus 219 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 256 (480)
..+.++..+...+.. +.++++|+||.+
T Consensus 255 -------~~~~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 255 -------KVARDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred -------eccCCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 122356666666653 345789999965
No 229
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.82 E-value=0.04 Score=48.57 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=30.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCcee
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
+-+++.||||+|||....= +..++... +.++.+++ ..|.=+. ++++.++...++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aK-LAa~~~~~--~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAK-LAARLKLK--GKKVALISADTYRIGAV---EQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHH-HHHHHHHT--T--EEEEEESTSSTHHH---HHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHH-HHHHHhhc--cccceeecCCCCCccHH---HHHHHHHHHhcccc
Confidence 4578999999999986332 22333222 44555555 4454443 34555555556543
No 230
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.77 E-value=0.027 Score=59.42 Aligned_cols=72 Identities=22% Similarity=0.093 Sum_probs=52.2
Q ss_pred CCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
-..+++-|.+++-.- . .+++|.|..|||||.+.+--+...+.. ...+.++|+++.|+..|..+.+++.....
T Consensus 194 ~~~L~~~Q~~av~~~--~--~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 194 SSPLNPSQARAVVNG--E--DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCCHHHHHHHhCC--C--CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 346899999988633 2 468999999999998744433333322 23456899999999999999988876543
No 231
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.76 E-value=0.015 Score=62.24 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
..+++-|.+++... . ..++|.|..|||||.+..-=+...+.. .....++|+|+.|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~--g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--P--GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35789999998753 2 479999999999998744444444432 34556899999999999999998887653
No 232
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.73 E-value=0.052 Score=56.93 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-G-YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~-~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
..|.+.+...+......++.+||.++.+..+..+...|... + ..+..+|++++..+|.+.+....+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777777777777767889999999999999999999765 4 679999999999999999999999999999999874
Q ss_pred ccCCCCCCCCEEEEcc
Q 011667 389 ARGFDQQQVNLIVNYD 404 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~ 404 (480)
. =.=+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 23345667777543
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.074 Score=51.49 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=23.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~ 181 (480)
+.+++.||||+|||......+.. +.. .+.++.++. |.|
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--KKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--cCCcEEEEecCCcc
Confidence 67899999999999864433322 222 244555554 445
No 234
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.57 E-value=0.087 Score=55.09 Aligned_cols=138 Identities=19% Similarity=0.200 Sum_probs=87.5
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.....+..-|.+.+..++....+-+++.|.-|=|||.+.-+.+........ ..+++|..|+.+-++.+++.+.+-....
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l 288 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFL 288 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHh
Confidence 444566667777888888876568999999999999887766533222211 4578888999998888888777766656
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh--------h--hheeeec
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML--------D--EVLLFSA 268 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~--------~--~~~~~SA 268 (480)
|..-.......+. ..........|-+-+|.... ..-+++|||||=-+- . +.++||.
T Consensus 289 g~~~~v~~d~~g~----~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIplplL~~l~~~~~rv~~sT 354 (758)
T COG1444 289 GYKRKVAPDALGE----IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIPLPLLHKLLRRFPRVLFST 354 (758)
T ss_pred CCccccccccccc----eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCChHHHHHHHhhcCceEEEe
Confidence 5442222111111 11111112346666775442 115789999997543 2 4789999
Q ss_pred ccc
Q 011667 269 TFN 271 (480)
Q Consensus 269 T~~ 271 (480)
|+.
T Consensus 355 TIh 357 (758)
T COG1444 355 TIH 357 (758)
T ss_pred eec
Confidence 975
No 235
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.55 E-value=0.02 Score=61.40 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=53.0
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC-CCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.++|-|.+++... . ..++|.|..|||||.+..-=+...+. ......++|+|+-|+..|..+.+++.++..
T Consensus 9 ~Ln~~Q~~av~~~-~---g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP-L---GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC-C---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4789999998753 2 47899999999999874444443343 234456899999999999999998887643
No 236
>PRK06526 transposase; Provisional
Probab=95.53 E-value=0.019 Score=52.81 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=15.8
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+++++.||+|+|||....
T Consensus 99 ~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred ceEEEEeCCCCchHHHHH
Confidence 899999999999997543
No 237
>PRK10536 hypothetical protein; Provisional
Probab=95.50 E-value=0.019 Score=52.21 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=42.9
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
.++...+..|...+..+..+ ..+++.|++|+|||+......+..+... .-.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCC
Confidence 35556678888888888876 7999999999999998777666555332 2334444447653
No 238
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.049 Score=57.16 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=81.3
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
...-.....|.+.+.+.+.+....++.+||.++.+.....+...|..+ |.++..+|+++++.+|.....+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 344445678888888888888888899999999999999998888755 8999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEE
Q 011667 383 ISTDVLARGFDQQQVNLIVN 402 (480)
Q Consensus 383 v~T~~~~~Gldi~~v~~Vi~ 402 (480)
|.|..+- -.=+++.-.||.
T Consensus 301 IGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEechhh-cCchhhccEEEE
Confidence 9997643 233456666664
No 239
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.47 E-value=0.025 Score=58.34 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=75.3
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH-HHHHHHhcccCce
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL-EVLRKMGKHTGIT 201 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~-~~~~~~~~~~~~~ 201 (480)
..+|+|...+..+-...-+.+.+..++-+|||.+.+..+...+... ...+|++.||.++|..+. ..+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 3568888877777665446899999999999996554444444443 346999999999999977 5566554433321
Q ss_pred eeEeec---CCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh
Q 011667 202 SECAVP---TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 260 (480)
Q Consensus 202 ~~~~~~---~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 260 (480)
...+.. ....+. ...+... +..|.++..+.- ..+.-..++++++||+|.+.
T Consensus 94 ~~~~~~~~~~~~~~t-~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNT-ILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCc-hhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 111111 111111 1111111 334444433211 12334568899999999984
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.023 Score=52.29 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=30.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.++++.|++|+|||..+ .++.+.+.. .+ .-++++++.+|+.++...+
T Consensus 106 ~nl~l~G~~G~GKThLa-~Ai~~~l~~--~g-~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 106 ENLVLLGPPGVGKTHLA-IAIGNELLK--AG-ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred CcEEEECCCCCcHHHHH-HHHHHHHHH--cC-CeEEEEEHHHHHHHHHHHH
Confidence 89999999999999863 334444442 23 3455556667777655433
No 241
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.31 E-value=0.069 Score=52.29 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHH
Q 011667 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (480)
Q Consensus 110 ~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (480)
.+++.+.. .+..+-..|+++.-..-.| .- .+.|-.|||||...++ -+..+....+..+++|.+=|+.|+.++..
T Consensus 151 a~l~~ies--kIanfD~~Q~kaa~~~~~G--~q-rIrGLAGSGKT~~La~-Kaa~lh~knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 151 ALLDTIES--KIANFDTDQTKAAFQSGFG--KQ-RIRGLAGSGKTELLAH-KAAELHSKNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred HHHHHHHH--HHhcccchhheeeeecCCc--hh-hhhcccCCCchhHHHH-HHHHHhcCCCCceEEEEeehHHHHHHHHH
Confidence 34444432 3444557788776655556 33 6788899999986333 23445666667799999999999999988
Q ss_pred HHHHHh
Q 011667 190 VLRKMG 195 (480)
Q Consensus 190 ~~~~~~ 195 (480)
.+.+++
T Consensus 225 lv~~F~ 230 (660)
T COG3972 225 LVPEFF 230 (660)
T ss_pred HHHHHH
Confidence 888875
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.27 E-value=0.026 Score=63.99 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=46.4
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhH--HHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV--LGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~--l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
.+++-|+.|+..++.+..+-+++.|..|+|||.+.- +.++..+. ...+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHH
Confidence 589999999999997655889999999999998621 22222221 12345788899998766554
No 243
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.041 Score=51.68 Aligned_cols=77 Identities=26% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
-++..|..-.+. +..| ..|...++-|...+-.+..+. .+++++|.||||||.. +-.++..+.. ..+++.
T Consensus 137 lsIRKf~k~~lt---l~dl---i~~gt~~~~~a~~L~~av~~r-~NILisGGTGSGKTTl-LNal~~~i~~---~eRvIt 205 (355)
T COG4962 137 LSIRKFPKIKLT---LLDL---IIFGTMIRRAAKFLRRAVGIR-CNILISGGTGSGKTTL-LNALSGFIDS---DERVIT 205 (355)
T ss_pred cccccccccccc---HHHH---HHcCCcCHHHHHHHHHHHhhc-eeEEEeCCCCCCHHHH-HHHHHhcCCC---cccEEE
Confidence 334445544444 2333 356678899999888888772 5999999999999983 2222333332 237888
Q ss_pred EecCHHHH
Q 011667 177 ICPTRELA 184 (480)
Q Consensus 177 l~Pt~~La 184 (480)
+=-|.||-
T Consensus 206 iEDtaELq 213 (355)
T COG4962 206 IEDTAELQ 213 (355)
T ss_pred Eeehhhhc
Confidence 88888874
No 244
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.21 E-value=0.036 Score=53.84 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=23.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..++++||||||||.. +-.++.++.......+++.+=
T Consensus 150 GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 150 GLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 4689999999999985 445556554322233455443
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.083 Score=53.03 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=30.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
+.+++.|++|+|||.. +-++.+.+.....+.+++++.+ .++...+...+
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 4689999999999964 3344454443334556776665 45555544433
No 246
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.18 E-value=0.038 Score=63.56 Aligned_cols=64 Identities=28% Similarity=0.341 Sum_probs=46.5
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC--CCCCCCeEEEEecCHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~--~~~~~~~~lil~Pt~~La~q~ 187 (480)
.+++-|+.|+..++.+..+-+++.|..|+|||.+. -.++..+. ....+..++.++||--.+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 58899999999999864578999999999999862 23333322 112345788899998766554
No 247
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.11 E-value=0.022 Score=54.06 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=38.8
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
.++.|...+..++... .+++++|+||||||.. +-.++..+.......+++++=.+.||
T Consensus 129 ~~~~~~~~L~~~v~~~-~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSR-LNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcC-CeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 4567777776666552 7899999999999985 34455554322334467776677776
No 248
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.11 E-value=0.16 Score=56.78 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=76.0
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
..+..+....|........+.....+.+++|.+++...|..++..+... ++.+..++|..+..++..+++..++|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 3455556667765433323333346789999999999999998887653 567889999999999999999999999
Q ss_pred CcEEEEcc-ccccCCCCCCCCEEEE
Q 011667 379 TQVLISTD-VLARGFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~~~Gldi~~v~~Vi~ 402 (480)
.+|+|+|. .+...+.+.++.++|.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 99999996 4445677778888774
No 249
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.10 E-value=0.028 Score=53.09 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=38.3
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
+++.|...+..++.+ +.+++++|+||||||.. +-.++..+.......+++++=.+.|+
T Consensus 117 ~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLA-RKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 345555555555554 27999999999999985 34455555443334577777777776
No 250
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.08 E-value=0.039 Score=62.59 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=53.5
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.|+-|.++|.. .+ ++++|.|..|||||.+.+--++..+.......++|+||=|+..|..+..++.+..
T Consensus 2 ~t~~Q~~ai~~--~~--~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 2 WTDEQWQAIYT--RG--QNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCHHHHHHHhC--CC--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 57899999973 35 8999999999999998655566655544334579999999999999888887643
No 251
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.07 E-value=0.021 Score=54.38 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=38.2
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
+++.|...+..+..+ +.+++++|+||||||.. +-.++..+....+..+++++-.+.||
T Consensus 133 ~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRA-HRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 456777777665554 28999999999999964 44444443222234567777777766
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.05 E-value=0.07 Score=45.18 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=23.1
Q ss_pred EEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
+++.|++|+|||......+..... .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 689999999999854333222222 3456777765443
No 253
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.97 E-value=0.035 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=17.3
Q ss_pred CCCCccEEEEccCCCccchHh
Q 011667 137 TPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.|+-.++++.||+|.|||.+.
T Consensus 45 ~gnmP~liisGpPG~GKTTsi 65 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSI 65 (333)
T ss_pred cCCCCceEeeCCCCCchhhHH
Confidence 354468999999999999963
No 254
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.96 E-value=0.051 Score=50.46 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 67999999999999754
No 255
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.93 E-value=0.13 Score=54.88 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=62.0
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC-----CcEEE-ecCCCCHHHHHHHHHHHhcC
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG-----YEVTT-IMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-----~~~~~-l~~~~~~~~r~~~~~~f~~g 377 (480)
.+..|....|.....-.-.-....++++++.++|...+...++.|.... ..+.. +|+.|+..++..++++|.+|
T Consensus 101 aiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g 180 (1187)
T COG1110 101 AIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG 180 (1187)
T ss_pred EEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC
Confidence 3444555555443322111222256899999999999999998887652 44443 99999999999999999999
Q ss_pred CCcEEEEcccc
Q 011667 378 LTQVLISTDVL 388 (480)
Q Consensus 378 ~~~iLv~T~~~ 388 (480)
..+|||+|..+
T Consensus 181 dfdIlitTs~F 191 (1187)
T COG1110 181 DFDILITTSQF 191 (1187)
T ss_pred CccEEEEeHHH
Confidence 99999999754
No 256
>PRK08181 transposase; Validated
Probab=94.86 E-value=0.079 Score=49.10 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=25.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
+++++.||+|+|||..... +...+.. .+..++++ +..+|+.++
T Consensus 107 ~nlll~Gp~GtGKTHLa~A-ia~~a~~--~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAA-IGLALIE--NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHH-HHHHHHH--cCCceeee-eHHHHHHHH
Confidence 7899999999999964332 2222222 23345444 444565554
No 257
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.85 E-value=0.05 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
..++++||||||||.. +-.++..+.
T Consensus 135 glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 6899999999999985 344555543
No 258
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.79 E-value=0.026 Score=55.76 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=32.7
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~ 168 (480)
.+.|...+..+++..+.-+++.||||||||.. +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 47777777777776556789999999999987 66677776553
No 259
>PHA02533 17 large terminase protein; Provisional
Probab=94.76 E-value=0.14 Score=52.47 Aligned_cols=71 Identities=17% Similarity=0.068 Sum_probs=51.3
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.+.|+|...+..+..+ +-.++..+=..|||.+....++..... ..+..+++++|++.-|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~--R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKN--RFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcC--eEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3778999988776545 666788888899998766444333222 2355899999999999888888876544
No 260
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.70 E-value=0.051 Score=58.42 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=53.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.++|-|.+++... . ..++|.|..|||||.+..-=+...+.. ...+.++|+++-|+..|..+.+.+.++..
T Consensus 4 ~Ln~~Q~~av~~~-~---g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT-E---GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC-C---CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5789999999753 2 479999999999998755544444432 23456899999999999999888877643
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=94.70 E-value=0.13 Score=49.27 Aligned_cols=17 Identities=47% Similarity=0.640 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 262
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.13 Score=51.29 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.++++||.|+|||.++-+
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999986544
No 263
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.099 Score=49.77 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=15.9
Q ss_pred CCccEEEEccCCCccchH
Q 011667 139 PYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~ 156 (480)
.++.++..||+|+|||+.
T Consensus 244 PWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred ccceeeeeCCCCCcHHHH
Confidence 467899999999999973
No 264
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.59 E-value=0.14 Score=51.72 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=27.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
+.+++.||+|+|||... -++.+.+.....+.+++++.. ..+..++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 46999999999999752 334444443333445666644 4454443
No 265
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.45 E-value=0.12 Score=47.75 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=25.8
Q ss_pred cEEEEccCCCccchHhHHHHhh-ccCCCCCCCeEEEEecCHHHH
Q 011667 142 NLIAQARNGSGKTTCFVLGMLS-RVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~-~l~~~~~~~~~lil~Pt~~La 184 (480)
-.+|.||||+||+-. +=.++. .+.. .....+++|+|++..+
T Consensus 89 I~~VYGPTG~GKSqL-lRNLis~~lI~-P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQL-LRNLISCQLIQ-PPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHH-HHHhhhcCccc-CCCCceEEECCCCCCC
Confidence 468899999999952 111221 1222 2345799999988543
No 266
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.38 E-value=0.093 Score=52.05 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=22.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
.++++.||+|+|||.. +-.++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhcCCcEEEEE
Confidence 6799999999999986 33344443322223345555
No 267
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.43 Score=43.90 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC---CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~ 174 (480)
+...|++..=-+...++|+.. =+ -|+ -+|.++.| ..+.+++.+|+|+||+.. .-+... .....
T Consensus 128 PNVkWsDVAGLE~AKeALKEA-VI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT-----EAnST 193 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEA-VI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT-----EANST 193 (439)
T ss_pred CCCchhhhccchhHHHHHHhh-ee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh-----hcCCc
Confidence 455677765445555555541 11 111 24667776 246799999999999963 222211 12246
Q ss_pred EEEecCHHHHHHHHHHHHHH
Q 011667 175 LCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~ 194 (480)
.+-+.+..|+.-|.-+-.++
T Consensus 194 FFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eEEeehHHHHHHHhccHHHH
Confidence 77778888887776555544
No 268
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.31 E-value=0.062 Score=63.38 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=46.8
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhH---HHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV---LGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~---l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
..+++.|+.|+..++.+..+-+++.|..|+|||.+.. -++...+.. .+.+++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 3589999999999998755778999999999998641 223333222 356788899998766554
No 269
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.21 E-value=0.16 Score=51.68 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc-CCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV-DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l-~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+.+++.-+=|.|||......++..+ .....+..++++++++.-|..++..+..+........... ... . .
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~-~~~------~--~ 93 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRK-KPK------I--I 93 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccch-hhh------h--h
Confidence 4678888999999985444444333 3344567899999999999999998888765422110000 000 0 0
Q ss_pred CCCCCeEEEeChHHHHHHHhc--CccccCceEEEEEcCchhhhh
Q 011667 220 PPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~ 261 (480)
......|.....+.+...+.. +...-.+..++|+||+|.+.+
T Consensus 94 ~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 94 KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC
Confidence 000122333332333222222 122233578999999998765
No 270
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.20 E-value=0.062 Score=51.42 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++|++||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 58999999999999754
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.19 E-value=0.08 Score=47.63 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=24.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
.-+++.|++|+|||-. +-++.+.+....++.+++++...
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH
Confidence 3589999999999973 33444444333335566666543
No 272
>PRK06893 DNA replication initiation factor; Validated
Probab=94.18 E-value=0.11 Score=47.18 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 40 ~~l~l~G~~G~GKThL 55 (229)
T PRK06893 40 PFFYIWGGKSSGKSHL 55 (229)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999964
No 273
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.2 Score=53.99 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHHHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l~i 161 (480)
..+|.++--.+.+++.|... + ..+. .+-+|+.||.|+|||.++.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~--------i--------~~~ri~Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTA--------L--------DSGRINHAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHH--------H--------HhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 45677666666666666541 1 1121 1347999999999998755543
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.11 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred ccccCCCCccEEEEccCCCccchHhHHHHhhccCC
Q 011667 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
|.+..+...++++.|+||+|||.+. --++..+..
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~ 68 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTATV-KFVMEELEE 68 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHh
Confidence 3333333357999999999999863 334444443
No 275
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.18 Score=53.36 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.6
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+-+.+.||||+|||++...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 6789999999999985433
No 276
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.2 Score=43.26 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=51.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+-.++.+|++||||...+--+-.+.. .+.++++..|...-- + +.. .+..-.+..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~iD~R---------~----~~~--~V~Sr~G~~-------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAIDTR---------Y----GVG--KVSSRIGLS-------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHH---cCCeEEEEecccccc---------c----ccc--eeeeccCCc--------
Confidence 55789999999999863333322222 355788888864210 1 100 111111111
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
..-++|-.+..+.+.+........ +++|.||||+-+
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 124677777788887776333222 889999999943
No 277
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.12 E-value=0.36 Score=44.02 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=22.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
..+++.|++|+|||..+ ..+...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc--CCeEEEE
Confidence 47999999999999753 3344444332 4455555
No 278
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.98 E-value=0.12 Score=50.96 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=23.7
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchHhH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~ 158 (480)
|-......+..+..+ +++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIK--KNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHH
Confidence 334444455556666 899999999999997643
No 279
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.98 E-value=0.22 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=15.7
Q ss_pred EEEEccCCCccchHhHHHHhhcc
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l 165 (480)
++|.|+||+|||++.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 46999999999987433 44443
No 280
>CHL00181 cbbX CbbX; Provisional
Probab=93.96 E-value=0.15 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.9
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
.++++.||+|+|||..+-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6799999999999986443
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.93 E-value=0.23 Score=49.83 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+.+++.||+|+|||.. +-++.+.+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH
Confidence 4699999999999975 2334444444333456777764
No 282
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.92 E-value=0.31 Score=50.41 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=50.9
Q ss_pred CCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 120 KFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
+-..|.|.=.+-|..++.. ..+-.++.+|=|-|||.+..+.+...+.. .+.+++|.+|...-+.++++.+.......
T Consensus 166 np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 3334455544444444432 12677889999999998765544433321 25689999999999999888888776533
No 283
>PRK05642 DNA replication initiation factor; Validated
Probab=93.92 E-value=0.13 Score=46.87 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=21.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+.++++|++|+|||-. +.++.+.+.. .+.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~--~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ--RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh--CCCcEEEeeH
Confidence 5689999999999964 2223332222 1345666553
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.19 Score=48.61 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=24.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRE 182 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~ 182 (480)
+.+++.||+|+|||....-.+.. +.. .+.++.+++ |.|.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~--~g~~V~lItaDtyR~ 247 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLK--QNRTVGFITTDTFRS 247 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH--cCCeEEEEeCCccCc
Confidence 78899999999999854333322 222 134565555 5554
No 285
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.91 E-value=0.1 Score=46.29 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.+++++||+|.|||..
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 4799999999999974
No 286
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.86 E-value=0.19 Score=47.26 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 68999999999999764
No 287
>PRK14974 cell division protein FtsY; Provisional
Probab=93.84 E-value=0.23 Score=47.61 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=21.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.-+++.|++|+|||....-.+ ..+.. .+.+++++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~~V~li~ 175 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGFSVVIAA 175 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCCeEEEec
Confidence 578899999999998533222 22322 234565555
No 288
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.82 E-value=0.21 Score=49.55 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=63.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH-HHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE-LAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
+-.++.|..|||||.+..+-++..+.....+.+++++-|+.. |..-++..+.......++....-.... .. .. ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~--~~-~i-~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKS--SM-EI-KI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCC--cc-EE-Ee
Confidence 457889999999999877777766555323567888888865 666677777776655554311111111 00 00 01
Q ss_pred CCCCCeEEEeCh-HHHHHHHhcCccccCceEEEEEcCchhhh
Q 011667 220 PPVTAQVVIGTP-GTIKKWMSAKKLGFSRLKILVYDEADHML 260 (480)
Q Consensus 220 ~~~~~~I~v~Tp-~~l~~~l~~~~~~~~~~~~lViDEah~l~ 260 (480)
...+..|++..- .....+ .....+.++.+|||..+.
T Consensus 78 ~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~ 114 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLT 114 (396)
T ss_pred cCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcC
Confidence 111344555433 222111 123347899999999753
No 289
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.77 E-value=1.3 Score=42.20 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.2
Q ss_pred CccEEEEccCCCccchHh
Q 011667 140 YRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (480)
-..+|++||+|+|||..+
T Consensus 162 ipSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLA 179 (554)
T ss_pred CCceEEecCCCCchHHHH
Confidence 357999999999999743
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.74 E-value=0.14 Score=50.90 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=24.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
..+++.|++|+|||... ..+.+.+.....+..++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 46899999999999753 344444443333456777653
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.32 Score=52.13 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhHH
Q 011667 142 NLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l 159 (480)
-.|++||.|+|||.++-+
T Consensus 40 AyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999986443
No 292
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.70 E-value=0.46 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.6
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
..+.+.||||+|||....
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 789999999999998543
No 293
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.62 E-value=0.13 Score=47.99 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|+|||+..
T Consensus 44 ~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 44 GFILITGEVGAGKTTLI 60 (269)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46899999999999863
No 294
>PRK08727 hypothetical protein; Validated
Probab=93.56 E-value=0.11 Score=47.38 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.|++|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 295
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.52 E-value=0.12 Score=52.32 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=25.9
Q ss_pred HHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC
Q 011667 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
+-|.+.+..++.....-++++||||||||.. +..++..+..
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~~ 268 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLNT 268 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccCC
Confidence 4444444444443224578999999999986 3445666643
No 296
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.45 Score=48.05 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~ 160 (480)
+.+|+++=-.+.+.+.|... +. .| -.+..+++||.|+|||.++.+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a--------~~--------~~ri~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNA--------FT--------LNKIPQSILLVGASGVGKTTCARII 55 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHH--------HH--------cCCCCceEEEECCCCccHHHHHHHH
Confidence 45677776666666666531 11 12 1157999999999999865443
No 297
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.46 E-value=0.29 Score=51.43 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=28.3
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
..+|+++=-.+.+++.|... +-.|. .+-+|++|+.|+|||....+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~a----------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHA----------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHH----------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 45666666666666666541 11221 14569999999999986443
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.37 E-value=0.11 Score=48.28 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=24.6
Q ss_pred HHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC
Q 011667 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
+-|.+.+..++......+++.|+||||||.. +-.++..+.
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 3344444444433225789999999999985 344555554
No 299
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.47 Score=49.15 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.8
Q ss_pred ccEEEEccCCCccchHhHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~i 161 (480)
+.+|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568899999999998755433
No 300
>PRK14701 reverse gyrase; Provisional
Probab=93.20 E-value=0.53 Score=54.63 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=62.0
Q ss_pred EEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 305 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 305 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
...+....|.....-........+.++||.+|++..+..++..|... ++.+..+||+++..++..+++.+.+|.
T Consensus 99 i~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~ 178 (1638)
T PRK14701 99 IVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD 178 (1638)
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 44455555654322111112224568999999999999999888763 567889999999999999999999999
Q ss_pred CcEEEEccc
Q 011667 379 TQVLISTDV 387 (480)
Q Consensus 379 ~~iLv~T~~ 387 (480)
.+|||+|.-
T Consensus 179 ~dILV~TPg 187 (1638)
T PRK14701 179 FDILVTTAQ 187 (1638)
T ss_pred CCEEEECCc
Confidence 999999964
No 301
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=1.4 Score=45.21 Aligned_cols=68 Identities=22% Similarity=0.453 Sum_probs=55.4
Q ss_pred EEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccC-CCCCCCCE
Q 011667 331 TIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLARG-FDQQQVNL 399 (480)
Q Consensus 331 ~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~G-ldi~~v~~ 399 (480)
+||+++|++.|..+++.+... ++.+..++|+++...+...++ .| .+|||+|+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998887543 577899999998777665554 46 89999995 45666 89999999
Q ss_pred EEE
Q 011667 400 IVN 402 (480)
Q Consensus 400 Vi~ 402 (480)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 302
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.16 E-value=0.087 Score=52.02 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=36.7
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
++++.|+||||||.++++|.+... ...++|+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988876432 236777779999987766655543
No 303
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.13 E-value=0.38 Score=47.96 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999753
No 304
>PRK04328 hypothetical protein; Provisional
Probab=93.11 E-value=0.26 Score=45.33 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=33.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
..+++.|++|+|||...+-.+.+.+.. +.++++++ +.+-..++.+.+..++
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 789999999999997544444444433 44677776 3344455666666654
No 305
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=0.29 Score=49.40 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+.+.||||+|||...
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78899999999999864
No 306
>PRK10436 hypothetical protein; Provisional
Probab=93.02 E-value=0.098 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-++++||||||||.. +..++..+..
T Consensus 219 GliLvtGpTGSGKTTt-L~a~l~~~~~ 244 (462)
T PRK10436 219 GLILVTGPTGSGKTVT-LYSALQTLNT 244 (462)
T ss_pred CeEEEECCCCCChHHH-HHHHHHhhCC
Confidence 5799999999999986 3455666543
No 307
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.99 E-value=0.15 Score=46.52 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999974
No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.97 E-value=0.38 Score=48.32 Aligned_cols=89 Identities=20% Similarity=0.105 Sum_probs=42.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (480)
+.+.+.||||+|||++....+....... ...++.++. +.|.-+ .+.++.|+...++.+..... .........
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~~~--~~Dl~~aL~ 330 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAVKD--AADLRLALS 330 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeeccCC--chhHHHHHH
Confidence 6789999999999986433322221221 122444333 334333 34455555444543322211 111111111
Q ss_pred CCCCCCeEEEeChHHHH
Q 011667 219 RPPVTAQVVIGTPGTIK 235 (480)
Q Consensus 219 ~~~~~~~I~v~Tp~~l~ 235 (480)
.+...-.++|-|+|+..
T Consensus 331 ~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred hccCCCeEEeCCCCcCh
Confidence 22223468888998654
No 309
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.96 E-value=0.052 Score=61.15 Aligned_cols=94 Identities=28% Similarity=0.426 Sum_probs=76.1
Q ss_pred cEEEEeCchhhHHHHHHHHHhCC-CcEEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 011667 330 QTIIFVRTKNSASALHKALKDFG-YEVTTIMGATI-----------QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397 (480)
Q Consensus 330 ~~lVf~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~-----------~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 397 (480)
-.++||.....+..+.+.++... ..+..+.|.+. ...+..++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 34899999999998888887642 23333444332 2346788999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCC
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 431 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g 431 (480)
+.|+.++.| .....|+|+.||+-+..
T Consensus 374 ~~~~~~~~~--------~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAP--------TYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCc--------chHHHHHHhhcccccch
Confidence 999999999 78899999999997754
No 310
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.64 Score=48.40 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+++--.+.+.+.|.. .++ .|. .+..|+.||.|+|||.+..+
T Consensus 12 P~~f~~iiGq~~v~~~L~~--------~i~--------~~~~~hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQN--------AID--------TGRVAHAFLFTGARGVGKTSTARI 57 (576)
T ss_pred CCCHHHccCcHHHHHHHHH--------HHH--------cCCCCeEEEEECCCCCCHHHHHHH
Confidence 4567777666666666654 111 121 14568999999999986544
No 311
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.88 E-value=0.32 Score=49.05 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.++++||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999986444
No 312
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.82 E-value=0.21 Score=45.15 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
.+-+|++|+||+-+.+.... .. .-++++|+|||||+.. +..++.+-.....+
T Consensus 106 ~IPt~eeL~LPevlk~la~~-------------------kR--GLviiVGaTGSGKSTt-mAaMi~yRN~~s~g 157 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALA-------------------KR--GLVIIVGATGSGKSTT-MAAMIGYRNKNSTG 157 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcc-------------------cC--ceEEEECCCCCCchhh-HHHHhcccccCCCC
Confidence 46678888888765543322 11 3689999999999986 55566554443333
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=0.44 Score=48.42 Aligned_cols=46 Identities=26% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l 159 (480)
.+.+|.++--.+.+++.|.. . +..+ -.+.++++||.|+|||.++-+
T Consensus 16 RP~~f~dliGq~~vv~~L~~--------a--------i~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSY--------T--------ILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHH--------H--------HHcCCCCceEEEECCCCCCHHHHHHH
Confidence 35567776666666666543 1 1122 115799999999999986544
No 314
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.74 E-value=0.57 Score=48.52 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=27.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCC-ccEEEEccCCCccchHhHHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPY-RNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~-~~~lv~a~TGsGKTl~~~l~ 160 (480)
+.+|+++--.+.+.+.|.. .+..|.- +-.|+.||.|+|||.++.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~----------------~i~~~r~~ha~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSS----------------ALDAGRINHAYLFSGPRGCGKTSSARIL 55 (584)
T ss_pred CCcHHHhcCcHHHHHHHHH----------------HHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4556666556666665543 1112211 23689999999999875443
No 315
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.74 E-value=0.11 Score=50.10 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=28.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
.+++++|+||||||.. +-.++..+.. ..+++.+=.+.||.
T Consensus 163 ~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El~ 202 (344)
T PRK13851 163 LTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLELV 202 (344)
T ss_pred CeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCcccc
Confidence 8999999999999985 3445555443 34666666777663
No 316
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.65 E-value=0.63 Score=46.03 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=31.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCcee
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
..++++|++|+|||....-.+. .+.. .+.++++++ |.|.-+.++ ++.++...++.+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~~--~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~ 158 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQR--KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPF 158 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--CCCCEEEEcCcccchhHHHH---HHHHhhccCCeE
Confidence 5688999999999975332222 2222 244666665 566555443 344444445443
No 317
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.64 E-value=0.25 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=17.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
.++++.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 68999999999999763 3344333
No 318
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.61 E-value=0.57 Score=48.51 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l~ 160 (480)
+.+|+++--.+.+.+.|.... ..+ ..+..|++||.|+|||.++-+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i----------------~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAI----------------KQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHH----------------HcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 456777766777776665411 111 1155788999999999865443
No 319
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.29 Score=49.89 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+-.++.||.|+|||.++..
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3459999999999987443
No 320
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.47 E-value=0.66 Score=52.28 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=65.9
Q ss_pred EEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CCcE---EEecCCCCHHHHHHHHHHHhcC
Q 011667 305 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEV---TTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 305 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~---~~l~~~~~~~~r~~~~~~f~~g 377 (480)
...+....|.....-........+.++||.++++..+..++..+... ++.+ ..+||+++..++...++.+.+|
T Consensus 98 i~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~ 177 (1171)
T TIGR01054 98 IIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG 177 (1171)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC
Confidence 34445555554333222222234678999999999999998887653 4433 4689999999999999999999
Q ss_pred CCcEEEEccccc-cCCC-CC-CCCEEEE
Q 011667 378 LTQVLISTDVLA-RGFD-QQ-QVNLIVN 402 (480)
Q Consensus 378 ~~~iLv~T~~~~-~Gld-i~-~v~~Vi~ 402 (480)
..+|||+|...- ..++ +. .++++|.
T Consensus 178 ~~dIlV~Tp~rL~~~~~~l~~~~~~iVv 205 (1171)
T TIGR01054 178 DFDILITTTMFLSKNYDELGPKFDFIFV 205 (1171)
T ss_pred CCCEEEECHHHHHHHHHHhcCCCCEEEE
Confidence 999999996421 1111 11 5667665
No 321
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.45 E-value=0.5 Score=44.05 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.+++++|+||-|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 6899999999999984
No 322
>PTZ00293 thymidine kinase; Provisional
Probab=92.42 E-value=0.33 Score=42.92 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=26.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
+-.++.||++||||.-.+-.+..+.. .+.+++++-|..
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~~ 42 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYSK 42 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 66789999999999753333333322 245788888864
No 323
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.41 E-value=0.32 Score=45.27 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
+-+++.+++|+|||....-.+.. +.. .+.+++++. +.|.-+.+ ++..|+...++
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i 128 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK--QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGV 128 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh--cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCe
Confidence 67788899999999854333322 222 245676665 44544333 34444443443
No 324
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.38 E-value=0.66 Score=48.21 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|++||.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999986544
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.36 E-value=0.29 Score=47.35 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=25.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
..++++||||||||.. +-.++..+... ...+++.+--..++
T Consensus 123 g~ili~G~tGSGKTT~-l~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 123 GLILVTGPTGSGKSTT-LASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred cEEEEECCCCCCHHHH-HHHHHHhhCcC-CCCEEEEEcCChhh
Confidence 6799999999999985 33445545432 23355555543443
No 326
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.35 E-value=0.16 Score=52.65 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=39.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.++++.||||||||..+++|.+... +..++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 6899999999999999999987653 235777779999998877766664
No 327
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.30 E-value=0.06 Score=48.97 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=12.4
Q ss_pred EEEEccCCCccchH
Q 011667 143 LIAQARNGSGKTTC 156 (480)
Q Consensus 143 ~lv~a~TGsGKTl~ 156 (480)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 328
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.29 E-value=0.38 Score=48.30 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.-+++.|++|+|||...+-.+.. +.. .+.++++++-. +-..|+...+..+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~-~a~--~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAAR-LAA--AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHh--cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 68899999999999853333322 221 24578888753 4455666555554
No 329
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.25 E-value=0.48 Score=45.46 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.6
Q ss_pred cc-EEEEccCCCccchHhHH
Q 011667 141 RN-LIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~-~lv~a~TGsGKTl~~~l 159 (480)
.. +++.||.|+|||.++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~ 43 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALA 43 (325)
T ss_pred CceeeeeCCCCCCHHHHHHH
Confidence 45 99999999999987443
No 330
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.66 Score=48.09 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+-+|++|+.|.|||....+
T Consensus 39 HA~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3569999999999986444
No 331
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.17 E-value=0.3 Score=44.12 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|+|||...
T Consensus 39 ~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLL 55 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999753
No 332
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.17 E-value=0.15 Score=51.88 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=38.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.++++.||||||||..+++|.+-. . ...++|.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~---~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y---PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c---cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999997633 1 2256777799999887776666654
No 333
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.13 E-value=0.4 Score=46.29 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=14.4
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.||+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 334
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=0.66 Score=48.28 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=30.3
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l~ 160 (480)
+.+|+++--.+.+++.|... +..|. .+.+|++||.|+|||..+.+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~----------------~~~gri~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNA----------------FETGRIAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 46777776677777666541 11221 146999999999999865443
No 335
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.09 E-value=0.15 Score=52.92 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC
Q 011667 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
+-|.+.+..++......++++||||||||.. +..++..+.
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 4444455444443235789999999999986 345666654
No 336
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.09 E-value=7.1 Score=38.67 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=31.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC-HHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT-RELAIQNLEV 190 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt-~~La~q~~~~ 190 (480)
..+.|+|.+|.|||.+ +.-++..+......+.++++--+ ...+..++..
T Consensus 176 gSlYVsG~PGtgkt~~-l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTAL-LSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cceEeeCCCCcchHHH-HHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 6899999999999986 33355555555555454555443 3455554443
No 337
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.07 E-value=0.9 Score=46.89 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|.++--.+.+.+.|.. .+ ..| ..+..|+.||.|+|||..+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~--------aI--------~~~rl~hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVN--------AI--------LNNKLTHAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred CCCHHHhcCcHHHHHHHHH--------HH--------HcCCCCceEEEECCCCCCHHHHHHH
Confidence 4566666556666665543 11 111 115689999999999986544
No 338
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.02 E-value=0.56 Score=48.43 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=26.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
+.+++.|++|+|||.. +-.+.+.+.....+.+++++.. .+++.++
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yita-eef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVSS-EEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEeeH-HHHHHHH
Confidence 3489999999999974 2234444333223445665554 4455443
No 339
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.01 E-value=1.4 Score=45.67 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=65.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc-C-ceeeEeecCCCCCcccccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-G-ITSECAVPTDSTNYVPISK 218 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 218 (480)
+-.++..|=-.|||.... +++..+.....+.++++++|.+..+..+++++....... . ..+.... +. .....-
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge---~I~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GE---TISFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-Cc---EEEEEe
Confidence 678888899999999744 666655544457799999999999999999888754321 1 1111111 11 110000
Q ss_pred CCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 219 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
.......|.+++- -..+...-..++++|||||+.+.+
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH
Confidence 0000124444422 011223344789999999998765
No 340
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.90 E-value=0.56 Score=47.02 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=23.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+.+++.||+|+|||.. +-++.+.+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc--CCCEEEeeH
Confidence 4689999999999975 23344444322 456776654
No 341
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.90 E-value=0.24 Score=45.22 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=34.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
..+++.|++|+|||...+-.+...+.. +.++++++ +.+-..|+.+.+..++
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 789999999999998654444444432 55788887 3445566666666554
No 342
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.89 E-value=0.3 Score=47.56 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=20.2
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCC
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~ 168 (480)
++.+++.||+|+|||.. +-.+...+...
T Consensus 168 Gq~~~IvG~~g~GKTtL-~~~i~~~I~~n 195 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVL-LQKIAQAITRN 195 (415)
T ss_pred CCEEEEECCCCCChhHH-HHHHHHhhccc
Confidence 38999999999999975 33355555443
No 343
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.87 E-value=0.59 Score=49.76 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 344
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=91.87 E-value=0.078 Score=49.74 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=36.2
Q ss_pred CCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC
Q 011667 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
+.--++-|..-+.++... .-++..+|-|+|||..........+..
T Consensus 126 I~~kt~~Q~~y~eai~~~--di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEH--DIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhc--CeeeeecccccCChhhhHHhHhhhhhh
Confidence 556688899988888886 778999999999998766666666554
No 345
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=0.76 Score=45.53 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+..|++||.|+|||.++.+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3588999999999986544
No 346
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.11 Score=48.16 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
-|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 58999999999999843
No 347
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.83 E-value=0.6 Score=48.77 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhHH
Q 011667 142 NLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l 159 (480)
-.|+.||.|+|||.++-+
T Consensus 40 AyLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986444
No 348
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.83 Score=46.69 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+++=-.+.+++.|... +. .+. ++-.|+.||.|+|||.++.+
T Consensus 12 P~~f~divGq~~v~~~L~~~--------~~--------~~~l~ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNA--------LD--------QQYLHHAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHH--------HH--------hCCCCeeEEEECCCCCCHHHHHHH
Confidence 45566665566666665541 11 121 13579999999999986444
No 349
>PRK04195 replication factor C large subunit; Provisional
Probab=91.81 E-value=0.56 Score=47.81 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=29.7
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHh
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~ 157 (480)
.+.+|.++-.++.....+..-. ..++ .|. .+.+++.||+|+|||...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l-----~~~~--------~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWI-----ESWL--------KGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHH-----HHHh--------cCCCCCeEEEECCCCCCHHHHH
Confidence 3556777777777766665410 0111 221 278999999999999753
No 350
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.80 E-value=1.7 Score=40.37 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.7
Q ss_pred ccEEEEccCCCccchHhHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~ 160 (480)
..+.+.+++|+|||..+..-
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 78999999999999865443
No 351
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.80 E-value=0.61 Score=44.64 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=27.9
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCC-ccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPY-RNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~-~~~lv~a~TGsGKTl~ 156 (480)
.+.+|+++-.++.+.+.+... ++ .|.. .-+++.||+|+|||..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~--------~~--------~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSI--------VK--------KGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHH--------Hh--------cCCCCeEEEeeCcCCCCHHHH
Confidence 356788887888777766541 11 2211 2345589999999975
No 352
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.84 Score=47.54 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.8
Q ss_pred ccEEEEccCCCccchHhHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~ 160 (480)
+-.|++||.|+|||.++.+.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34699999999999865443
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.73 E-value=0.83 Score=43.70 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||.+.
T Consensus 39 ~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999753
No 354
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.73 E-value=0.34 Score=45.23 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=28.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
..+++.|++|+|||...+-.+.+.... .+..+++++-- .-..++...+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcc-cCHHHHHHHHH
Confidence 789999999999997533333332222 14567777632 22344444443
No 355
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.68 E-value=0.51 Score=46.14 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.+++.||.|+|||..+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3469999999999986433
No 356
>PRK06921 hypothetical protein; Provisional
Probab=91.65 E-value=0.56 Score=43.53 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=26.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
.++++.|++|+|||.. +.++...+... .+..++++. ..++..+
T Consensus 118 ~~l~l~G~~G~GKThL-a~aia~~l~~~-~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHL-LTAAANELMRK-KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHhhh-cCceEEEEE-HHHHHHH
Confidence 7899999999999975 33444444432 144555555 3445444
No 357
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.51 E-value=0.24 Score=52.02 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=38.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
+++++.||||||||..+++|-+... ...++|+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----CCCEEEEeCCchHHHHHHHHHHhC
Confidence 6899999999999999999987543 225777779988887766655553
No 358
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.50 E-value=0.23 Score=47.62 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=26.4
Q ss_pred ChHHHHhhcccccCCC--CccEEEEccCCCccchHhHH
Q 011667 124 PSKIQAISLPMILTPP--YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~--~~~~lv~a~TGsGKTl~~~l 159 (480)
.+|+|...|..++..+ .+-.++.||.|.|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 4688888887777541 23688999999999975433
No 359
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.49 E-value=1.3 Score=45.81 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=67.3
Q ss_pred HHhcccCCcEEEEeCchhhH----HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCC
Q 011667 322 FELGEKMGQTIIFVRTKNSA----SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-VLARGFDQQQ 396 (480)
Q Consensus 322 ~~~~~~~~~~lVf~~s~~~~----~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-~~~~Gldi~~ 396 (480)
......+.++.+.++|-=-| ..+.++|...|+.+..+.|.+....|..+++...+|+++++|.|- .+...+++.+
T Consensus 305 l~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~ 384 (677)
T COG1200 305 LAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHN 384 (677)
T ss_pred HHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecc
Confidence 34445677899999986544 455566666799999999999999999999999999999999996 4567888888
Q ss_pred CCEEEEc
Q 011667 397 VNLIVNY 403 (480)
Q Consensus 397 v~~Vi~~ 403 (480)
.-+||.-
T Consensus 385 LgLVIiD 391 (677)
T COG1200 385 LGLVIID 391 (677)
T ss_pred eeEEEEe
Confidence 8888853
No 360
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.46 E-value=0.3 Score=46.72 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=26.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
.++++.|+||+|||... .++...+.. .+..++++ +..+|..+.
T Consensus 184 ~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLS-NCIAKELLD--RGKSVIYR-TADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHH-HHHHHHHHH--CCCeEEEE-EHHHHHHHH
Confidence 78999999999999853 334443332 24455554 444555543
No 361
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=0.67 Score=44.13 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=26.9
Q ss_pred CCChHHHHhhcccccC----CC-CccEEEEccCCCccchHhHH
Q 011667 122 QKPSKIQAISLPMILT----PP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~----~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
..++|+|..++..+.+ |. .+-.++.||.|.||+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4577888888876653 31 13589999999999975433
No 362
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.45 E-value=1.4 Score=48.46 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST- 385 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T- 385 (480)
-.|.+.-+...+.....++++.|.|+|-=-|+.-++-|++ .++++..+..-.+.++...+++..++|+++|+|.|
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 4555555554555555778999999998777776666654 47889999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEE
Q 011667 386 DVLARGFDQQQVNLIVN 402 (480)
Q Consensus 386 ~~~~~Gldi~~v~~Vi~ 402 (480)
.++..++-+.++-+||.
T Consensus 706 rLL~kdv~FkdLGLlII 722 (1139)
T COG1197 706 RLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HhhCCCcEEecCCeEEE
Confidence 57888999999999886
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.36 E-value=0.27 Score=42.82 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=31.5
Q ss_pred EEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
+++.|++|+|||...+-.+...+. .+.++++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999864433333332 25568887643 4566666666665
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.31 E-value=0.87 Score=44.79 Aligned_cols=44 Identities=20% Similarity=0.073 Sum_probs=25.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q 186 (480)
..+++.||+|+|||....-.+...... .+.++.++. +.|..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~e 269 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIE 269 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHH
Confidence 458899999999998644433322111 233555554 55665544
No 365
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.30 E-value=0.14 Score=44.32 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCeEEEeChHHHHHHHhcCccc--cCceEEEEEcCchhhhhh-heeeecccc
Q 011667 223 TAQVVIGTPGTIKKWMSAKKLG--FSRLKILVYDEADHMLDE-VLLFSATFN 271 (480)
Q Consensus 223 ~~~I~v~Tp~~l~~~l~~~~~~--~~~~~~lViDEah~l~~~-~~~~SAT~~ 271 (480)
.++|+|+++..|++-.....+. ..+-.+|||||||.+.+. .=.+|.+++
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~~~~~~s~~is 170 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDAARDSFSFSIS 170 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGGCHCCC-EEEE
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHHHHHHhcceec
Confidence 4789999999887654332221 234479999999999886 335565554
No 366
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.10 E-value=0.73 Score=45.92 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=30.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
..++++|++|+|||....-.+ .++.. .+.+++++. +.|.-+ .++++.++...++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~--~g~kV~lV~~D~~R~aa---~eQL~~la~~~gv 151 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK--KGLKVGLVAADTYRPAA---YDQLKQLAEKIGV 151 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH--cCCeEEEecCCCCCHHH---HHHHHHHHHHcCC
Confidence 678999999999998643333 33332 234566555 334432 3344444444444
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.05 E-value=0.18 Score=47.13 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=28.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
.+++++|+||||||.. +-.++..+... ..+++++-.+.|+
T Consensus 128 ~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 128 GNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred eEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 7999999999999986 34455555543 3467777666665
No 368
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.04 E-value=0.45 Score=45.20 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=28.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
+-+.+.+|+|||||...+-.+.+... .+..++++..-..+-.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 97 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHH
Confidence 78999999999999864444443332 2557788766554443
No 369
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.04 E-value=0.22 Score=47.86 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=27.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
.+++++|+||||||.. +-.++..+.. ..+++.+=-+.||.
T Consensus 161 ~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El~ 200 (332)
T PRK13900 161 KNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREIV 200 (332)
T ss_pred CcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCccc
Confidence 8999999999999985 3445555543 34565554555553
No 370
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=1.6 Score=41.57 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCcccCCCCHHHHHHHHhh--cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++.|=....++.+... +..+.|--++.-.|. ..+.+++.||+|+|||+.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-----PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID-----PPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-----CCCceEeeCCCCCcHHHH
Confidence 456677776545544444431 355555555554442 127799999999999985
No 371
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.88 E-value=0.75 Score=44.90 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.-+++.|++|+|||...+..+ ..+.. .+.+++++.-. +-..|+.....++
T Consensus 83 slvLI~G~pG~GKStLllq~a-~~~a~--~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVA-ARLAK--RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHH-HHHHh--cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 788999999999998533322 22222 23578888754 3345655555444
No 372
>PRK13764 ATPase; Provisional
Probab=90.80 E-value=0.4 Score=49.53 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.+++++|+||||||.. +-.++..+.
T Consensus 258 ~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 6799999999999975 344555554
No 373
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.76 E-value=3.9 Score=41.28 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=64.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-CCCCCCC
Q 011667 328 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLAR-GFDQQQV 397 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~-Gldi~~v 397 (480)
...+||.++|++.|..+...+... .+.+.+++|+.+...+..-++ .-++|+|+|. .+.. -+|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 446899999999999998887654 456889999998776665553 3458999995 3333 5678899
Q ss_pred CEEEEccCCCCCCCCCCCCccccccccccccc
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 429 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR 429 (480)
+++|.-.......-.....+...++.++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99885211100000001345555666666655
No 374
>PRK09354 recA recombinase A; Provisional
Probab=90.69 E-value=0.48 Score=45.48 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
+-+.+.+|+|||||...+..+.+... .+..++++..-..+-.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 102 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHH
Confidence 78899999999999875554444432 2567888886665543
No 375
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.66 E-value=1.2 Score=46.82 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l 159 (480)
..+|.++--.+.+...|... +.... ....+|+.||.|+|||..+..
T Consensus 12 P~~f~~liGq~~i~~~L~~~--------l~~~r-------l~~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNA--------LISNR-------IAPAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred CCcHhhccChHHHHHHHHHH--------HHcCC-------CCceEEEECCCCCChHHHHHH
Confidence 45677776666666666541 11100 115689999999999986444
No 376
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.60 E-value=0.57 Score=46.73 Aligned_cols=52 Identities=15% Similarity=0.377 Sum_probs=46.6
Q ss_pred EEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 011667 331 TIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 386 (480)
Q Consensus 331 ~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~ 386 (480)
.|||+++++.|..++..|... ++.+..+.|+|....+++++++ .-.|+|||.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 799999999999999998653 8999999999999999999986 557999996
No 377
>PF12846 AAA_10: AAA-like domain
Probab=90.46 E-value=0.28 Score=46.37 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=28.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
+++++.|+||||||......+.+.+.. +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCchHHH
Confidence 689999999999998765433333333 456777767765543
No 378
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.41 E-value=1.3 Score=45.24 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+++--.+.+.+.|.. .+...-++ +..++.||.|+|||.++..
T Consensus 10 P~~fdeiiGqe~v~~~L~~--------~I~~grl~-------hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSL--------ALDNNRLA-------HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred CCCHHHccCcHHHHHHHHH--------HHHcCCCC-------eeEEEECCCCCcHHHHHHH
Confidence 4677777667777666654 11111111 3458999999999986444
No 379
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.40 E-value=2.7 Score=42.62 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=66.0
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.....-.+..... ...++||.|++++.+..+++.+... ++.+..++|+.+...+...+.
T Consensus 44 vi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-- 121 (460)
T PRK11776 44 VIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-- 121 (460)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc--
Confidence 455556666676443222332221 2336899999999999988877643 678999999998766554443
Q ss_pred hcCCCcEEEEcc-----ccc-cCCCCCCCCEEEEcc
Q 011667 375 KDGLTQVLISTD-----VLA-RGFDQQQVNLIVNYD 404 (480)
Q Consensus 375 ~~g~~~iLv~T~-----~~~-~Gldi~~v~~Vi~~~ 404 (480)
...+|+|+|. .+. ..+++.++++||.-.
T Consensus 122 --~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 122 --HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred --CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 5678999994 222 457888999988533
No 380
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.33 E-value=0.27 Score=43.42 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=22.5
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
-++++||||||||.. +..++..+.... +.+++.+--
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhhhcC-CcEEEEEcC
Confidence 478999999999986 333455544322 335555543
No 381
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.30 E-value=0.72 Score=39.26 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.0
Q ss_pred ccEEEEccCCCccchHhHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~i 161 (480)
+..|+.||.|+||+..+...+
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a 40 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFA 40 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 457999999999997644433
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.05 E-value=0.35 Score=42.25 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=23.2
Q ss_pred ChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.++-|...+...+.. +..+++.||||||||..
T Consensus 10 ~~~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEA-RKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhC-CCEEEEECCCCCCHHHH
Confidence 345566556555544 38999999999999985
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.00 E-value=0.67 Score=42.91 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=24.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.-+++.|++|+|||...+-.+.+.+. .+.++++++
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis 71 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVT 71 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 78999999999999854444443332 255788887
No 384
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.95 E-value=0.42 Score=53.91 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=43.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC--CCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN--LKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~--~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
++++|.|..|||||.+...-++..+... ..-..+|||+-|+.-+..+..++..-
T Consensus 17 ~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 17 QSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 7899999999999998766677766652 35568999999999998888777653
No 385
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.85 E-value=3.2 Score=40.97 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.+++.||.|+|||..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5689999999999975433
No 386
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.78 E-value=3.6 Score=36.24 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=62.4
Q ss_pred EEEEcCchhHHHHH-HHHHHHHhc----ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMV-IRDRIFELG----EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 303 ~~~~~~~~~~k~~~-l~~~l~~~~----~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
..+..+....|... +...+.... ....++||.+++...+...+..+... ++.+..++|+.+.......+.
T Consensus 39 ~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (203)
T cd00268 39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK- 117 (203)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-
Confidence 45555566666433 222222222 13457999999999988887766544 778889999988766544332
Q ss_pred HhcCCCcEEEEccc-----c-ccCCCCCCCCEEEEc
Q 011667 374 FKDGLTQVLISTDV-----L-ARGFDQQQVNLIVNY 403 (480)
Q Consensus 374 f~~g~~~iLv~T~~-----~-~~Gldi~~v~~Vi~~ 403 (480)
+...|+|+|.. + ..-.++++++++|.-
T Consensus 118 ---~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 118 ---RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred ---CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 66789999942 2 223567788888743
No 387
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.52 Score=45.33 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.2
Q ss_pred CccEEEEccCCCccchH
Q 011667 140 YRNLIAQARNGSGKTTC 156 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~ 156 (480)
-+|++..+|+|+|||+.
T Consensus 384 fRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMF 400 (630)
T ss_pred hhheeeeCCCCCCchHH
Confidence 37999999999999974
No 388
>PRK08116 hypothetical protein; Validated
Probab=89.54 E-value=0.65 Score=43.19 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=26.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
..+++.|++|+|||..+ .++.+.+... +..++++ +..+|...
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~--~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK--GVPVIFV-NFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc--CCeEEEE-EHHHHHHH
Confidence 45999999999999863 3455555443 3345444 44455544
No 389
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.39 E-value=0.45 Score=41.20 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=25.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
+++++.|++|+|||..+.. +...+.. .+..++++ +..+|...
T Consensus 48 ~~l~l~G~~G~GKThLa~a-i~~~~~~--~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA-IANEAIR--KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH-HHHHHHH--TT--EEEE-EHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH-HHHHhcc--CCcceeEe-ecCceecc
Confidence 8999999999999986433 3333332 24455554 44456554
No 390
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=89.35 E-value=0.44 Score=50.09 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=38.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.++++.||||||||..+++|-|... ...++|+=|--|+........++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~-----~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW-----PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC-----CCCEEEEeCcchHHHHHHHHHHhC
Confidence 7899999999999999999987543 235777779999887766665554
No 391
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.20 E-value=0.53 Score=49.35 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=37.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.++++.||||||||..+++|-+-.. +..++|+=|..|+...+....++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~-----~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW-----GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC-----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 6899999999999999999976432 235677779999887766655444
No 392
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=0.77 Score=47.55 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=21.3
Q ss_pred eChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
+=||++..-+..-.. . =-++++||+|.|..
T Consensus 402 amPGrIiQ~mkka~~--~-NPv~LLDEIDKm~s 431 (782)
T COG0466 402 AMPGKIIQGMKKAGV--K-NPVFLLDEIDKMGS 431 (782)
T ss_pred cCChHHHHHHHHhCC--c-CCeEEeechhhccC
Confidence 459999888875222 1 12789999999875
No 393
>PRK05973 replicative DNA helicase; Provisional
Probab=89.05 E-value=0.79 Score=41.55 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=38.9
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.++|... ..--+..| .-+++.|++|+|||...+-.+.+.+.. +.+++|++--- -..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~G--sl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEe-s~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPG--DLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEY-TEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCC--CEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeC-CHHHHHHHHHHc
Confidence 4455332 33334444 789999999999998654444444322 55677776432 245666666655
No 394
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=5.9 Score=39.03 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.2
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.+|.|+|||+.
T Consensus 187 rglLLfGPpgtGKtmL 202 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTML 202 (428)
T ss_pred chhheecCCCCchHHH
Confidence 5789999999999974
No 395
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.00 E-value=0.73 Score=52.39 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=43.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
++++|.|+-|||||....--++..+........+++|+-|+.-|..+..++....
T Consensus 11 ~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 11 TSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 7899999999999987655555555444455689999999999999887776544
No 396
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.00 E-value=2.8 Score=42.67 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=72.0
Q ss_pred EEEEcCchhHHHHHH-HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 303 YKVYCPDELAKVMVI-RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
.++..+....|.... ...+ ...+.+||.+++++.+......|...++.+..++++.+..++..++.....|..+|
T Consensus 29 vlv~apTGsGKTl~y~lp~l----~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~i 104 (470)
T TIGR00614 29 CFVVMPTGGGKSLCYQLPAL----CSDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKL 104 (470)
T ss_pred EEEEcCCCCcHhHHHHHHHH----HcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 345566666665432 2212 14578999999999999999999999999999999999999999999999999999
Q ss_pred EEEccc-cccC------C-CCCCCCEEEE
Q 011667 382 LISTDV-LARG------F-DQQQVNLIVN 402 (480)
Q Consensus 382 Lv~T~~-~~~G------l-di~~v~~Vi~ 402 (480)
+++|.- +... + ....+.+||.
T Consensus 105 l~~TPe~l~~~~~~~~~l~~~~~i~~iVi 133 (470)
T TIGR00614 105 LYVTPEKCSASNRLLQTLEERKGITLIAV 133 (470)
T ss_pred EEECHHHHcCchhHHHHHHhcCCcCEEEE
Confidence 999963 2222 2 3456677664
No 397
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=88.94 E-value=0.58 Score=48.81 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=38.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.++++.||||||||..+.+|-+-.. +..++|+=|..|+.......-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-----~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-----GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-----CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 6899999999999999999975432 2357777799999877666555543
No 398
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.94 E-value=0.92 Score=47.89 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+..|+.||.|.|||.++-+
T Consensus 41 HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578999999999986544
No 399
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=88.92 E-value=8 Score=38.83 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=65.1
Q ss_pred EEEEcCchhHHHHHHH-HHHHHhc------ccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIR-DRIFELG------EKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~-~~l~~~~------~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~ 371 (480)
.++..+....|..... ..+.... ....++||.+++++.+..+++.+.. .++.+..++|+.....+...+
T Consensus 41 ~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 41 VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh
Confidence 4555666666754422 2122111 1235799999999998888776543 478899999999877665444
Q ss_pred HHHhcCCCcEEEEccc------cccCCCCCCCCEEEEcc
Q 011667 372 KEFKDGLTQVLISTDV------LARGFDQQQVNLIVNYD 404 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~~------~~~Gldi~~v~~Vi~~~ 404 (480)
.+..+|||+|.- ....+++.++.+||.-.
T Consensus 121 ----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 121 ----SENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred ----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 356789999962 22467788888888533
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.91 E-value=0.53 Score=42.11 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNL 169 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~ 169 (480)
.-+.+.||+|||||+ ++-++..+....
T Consensus 32 e~vaI~GpSGSGKST--LLniig~ld~pt 58 (226)
T COG1136 32 EFVAIVGPSGSGKST--LLNLLGGLDKPT 58 (226)
T ss_pred CEEEEECCCCCCHHH--HHHHHhcccCCC
Confidence 789999999999998 677777777653
No 401
>PRK09401 reverse gyrase; Reviewed
Probab=88.85 E-value=2.5 Score=47.81 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=65.6
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEE--ecCCCCHHHHHHHHHHHhcC
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTT--IMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~--l~~~~~~~~r~~~~~~f~~g 377 (480)
....+....|...+.-........+.++||.++++..+..+++.+... ++.+.. .|++++..++....+.+..|
T Consensus 99 ~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~ 178 (1176)
T PRK09401 99 AIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG 178 (1176)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC
Confidence 344455566654433222222335678999999999999999988765 344443 35556677888888899999
Q ss_pred CCcEEEEccc-cc---cCCCCCCCCEEEE
Q 011667 378 LTQVLISTDV-LA---RGFDQQQVNLIVN 402 (480)
Q Consensus 378 ~~~iLv~T~~-~~---~Gldi~~v~~Vi~ 402 (480)
..+|+|+|.- +. ..+....++++|.
T Consensus 179 ~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 179 DFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred CCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 9999999941 11 1344445777774
No 402
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.70 E-value=0.47 Score=51.89 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=78.6
Q ss_pred HhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 011667 323 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 402 (480)
Q Consensus 323 ~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~ 402 (480)
+..+...++|||+.-....+.+...+.-.++.....-++ ++-...+..|++ --..|+-+...+-|+++-+++||+.
T Consensus 1216 K~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl 1291 (1394)
T KOG0298|consen 1216 KFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFL 1291 (1394)
T ss_pred hccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhhe
Confidence 344456789999988777777777776555554444333 344556666766 2345677888889999999999999
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCc--eeEEEEeeCCc
Q 011667 403 YDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK--GVVFNLLMDGD 444 (480)
Q Consensus 403 ~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~--g~~~~l~~~~~ 444 (480)
.++- .++..-.|.+||..|.|++ -.+..|+.++.
T Consensus 1292 ~ePi--------LN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~T 1327 (1394)
T KOG0298|consen 1292 VEPI--------LNPGDEAQAIGRVHRIGQKRPTFVHRFIVNET 1327 (1394)
T ss_pred eccc--------cCchHHHhhhhhhhhcccccchhhhhhhhccc
Confidence 9988 5677789999999999964 44555665443
No 403
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.70 E-value=1.3 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=18.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.-+.++++-|||||...- +++..+.
T Consensus 52 g~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 52 GILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred ceEEEEecCCCchhHHHH-HHHHhcC
Confidence 378999999999998755 4444444
No 404
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.70 E-value=0.97 Score=40.78 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=26.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEEecCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil~Pt~ 181 (480)
.-+.+.|++|+|||...+..+...+... .....++++....
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 7899999999999986444443333221 0124678877543
No 405
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.64 E-value=2.7 Score=41.04 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+-.++.||.|+||+..+.
T Consensus 42 HA~Lf~Gp~G~GK~~lA~ 59 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAY 59 (365)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 406
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=88.62 E-value=0.53 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=25.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
-.+++.|++|||||.. ++-++..+.... ..+++++|.
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEecC
Confidence 3789999999999975 555555544432 356666673
No 407
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.62 E-value=3.3 Score=42.39 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=65.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH----HHhcccCceeeEeecCCCCCcccc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR----KMGKHTGITSECAVPTDSTNYVPI 216 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 216 (480)
+-.+..-|---|||+. ++|++..+.....+-++.+++.-|..++-++.++. +|.+...+ ... .
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v---i~~-k-------- 269 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT---IEN-K-------- 269 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce---eee-c--------
Confidence 6677778899999986 88888888877788899999999887777776654 34332111 000 0
Q ss_pred cCCCCCCCeEEEeChHH-----HHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 217 SKRPPVTAQVVIGTPGT-----IKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 217 ~~~~~~~~~I~v~Tp~~-----l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
+--|.+.-|+. +....+.+...-.++.++++||||-+..
T Consensus 270 ------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 270 ------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH
Confidence 11244443332 1111222344556789999999997643
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=88.58 E-value=0.64 Score=46.20 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=31.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCce
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGIT 201 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~ 201 (480)
.-+++++++|+|||....-.+. ++... .+.+++++. +.|..+.. +++.++...++.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~-~l~~~-~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~ 158 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAK-YLKKK-KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVP 158 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHH-HHHHh-cCCcEEEEEccccchHHHH---HHHHHHhhcCCe
Confidence 5688999999999986433332 22221 244566655 56655432 333444444544
No 409
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.58 E-value=0.51 Score=49.60 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=35.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.++++.||||||||..+++|.+... +..++|+=|--|+..-.....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----CCCEEEEeCcHHHHHHHHHHH
Confidence 6899999999999999999987532 335778889999876555443
No 410
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.54 E-value=0.88 Score=48.49 Aligned_cols=70 Identities=24% Similarity=0.158 Sum_probs=52.8
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.+++-|.+++... . ..++|.|..|||||.+..-=+...+.. ......+|.++=|+..|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~-~---gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP-D---GPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC-C---CCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4678899998877 2 468899999999998755555544444 23445689999999999988888888754
No 411
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.48 E-value=1.9 Score=42.14 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=24.0
Q ss_pred EEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 144 lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
++.++.|+|||.+..+.++..+........++++ |+..-+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHH
Confidence 4678999999998777666665544333345555 66544444
No 412
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.44 E-value=0.43 Score=43.14 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=32.0
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
+..+++.|++|+|||...+-.+.+.+... +.++++++-. +-..++.+.+..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e-e~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE-EPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS-S-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 37899999999999976444444443320 3467777733 33456666666553
No 413
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=88.43 E-value=0.94 Score=43.10 Aligned_cols=42 Identities=12% Similarity=-0.123 Sum_probs=26.6
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCC---CCCCCeEEEEecCH
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCICPTR 181 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~---~~~~~~~lil~Pt~ 181 (480)
+.-+.+.|++|+|||...+-.++..... ...+.+++|+.-..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3678899999999997544433332211 12345888887433
No 414
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.38 E-value=0.37 Score=45.88 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 415
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.33 E-value=0.56 Score=41.69 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=20.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.++++.|.||||||.+....+...+........-++++
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~ii 76 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYII 76 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEE
Confidence 58999999999999875544444444222233334444
No 416
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.32 E-value=0.74 Score=48.34 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=37.3
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH--HHHHHHHHHHHHhc
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE--LAIQNLEVLRKMGK 196 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~--La~q~~~~~~~~~~ 196 (480)
..++++.|+||+|||..+.+.+.+.+.. +..++|+=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 3789999999999998875555555543 345666668754 66666666666543
No 417
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.26 E-value=1.8 Score=37.73 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+..++.||.|+|||....
T Consensus 15 ~~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLAL 32 (188)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 418
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.19 E-value=1.4 Score=46.30 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC-CCccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+++--.+.+++.|... +-.+ -.+.+|++||.|+|||..+.+
T Consensus 12 P~tFddIIGQe~vv~~L~~a----------------i~~~rl~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNA----------------LDEGRLHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 45666666666666666541 1112 124689999999999986544
No 419
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.18 E-value=3.3 Score=37.77 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=31.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC---------CCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD---------PNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~---------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.-.++.||.|+|||+..+-.+++... ....+.++||++--. =..++.+++..++..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQH 66 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHhh
Confidence 34689999999999864444433211 112345788888221 122444555555443
No 420
>PRK12377 putative replication protein; Provisional
Probab=88.15 E-value=1.7 Score=39.81 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=27.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
.++++.|++|+|||.. +.++.+.+... +..++ .++..+|..++.
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~~--g~~v~-~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLAK--GRSVI-VVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHc--CCCeE-EEEHHHHHHHHH
Confidence 6799999999999975 33344444432 33444 444456665543
No 421
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.07 E-value=1 Score=47.07 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+..|++||.|.|||.++.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4589999999999986544
No 422
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.90 E-value=1.1 Score=39.21 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=36.5
Q ss_pred hhccccc-CCCCccEEEEccCCCccchHhHHHHhhccCC-------CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 130 ISLPMIL-TPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-------NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 130 ~~i~~il-~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-------~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
..++-++ .| .-+++.|++|+|||...+-.+...+.. ...+.++|++..-.. ..++.+++..+..
T Consensus 23 ~li~g~~~~g--~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 23 WLIDGLLPRG--ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EEETTEE-TT--SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eeECCcccCC--eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 3444444 45 779999999999998644433333321 113557888876544 4566677766554
No 423
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.89 E-value=1.7 Score=44.68 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+.||.|+|||..+.+
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999986444
No 424
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.88 E-value=1.6 Score=42.53 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+..++.||.|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46799999999999753
No 425
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.87 E-value=0.87 Score=41.80 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=20.3
Q ss_pred eChHHHHHHHhcCccccCceEEEEEcCchhhhh
Q 011667 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 261 (480)
--|+-|..++.+ +..=+++.+||.|++..
T Consensus 89 eK~gDlaaiLt~----Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 89 EKPGDLAAILTN----LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred cChhhHHHHHhc----CCcCCeEEEehhhhcCh
Confidence 345666666654 55567899999999654
No 426
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.86 E-value=1.8 Score=42.45 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHh
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
+.+|+++--++.+.+.+.. .++..-+ .+.+++.||.|+|||...
T Consensus 13 P~~~~~iig~~~~~~~l~~--------~i~~~~~-------~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLN--------AIENNHL-------AQALLFCGPRGVGKTTCA 56 (367)
T ss_pred CCcHHhcCCcHHHHHHHHH--------HHHcCCC-------CeEEEEECCCCCCHHHHH
Confidence 5677777667777666654 1121111 157899999999999753
No 427
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.64 E-value=1.7 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.9
Q ss_pred CCCCccEEEEccCCCccchHh
Q 011667 137 TPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (480)
+....++++.||+|+|||...
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred cCCcCceEEECCCCCCHHHHH
Confidence 344469999999999999853
No 428
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.64 E-value=0.63 Score=44.30 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=45.2
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
..+....+++.-+.. +..+++.|..-+-.++.. .++++++++||||||.. +.+++..+.. ..+++.+=-
T Consensus 110 Rk~~~~~~t~~~l~~------~gt~~~~~~ayL~~~ie~-~~siii~G~t~sGKTt~-lnall~~Ip~---~~rivtIEd 178 (312)
T COG0630 110 RKFSDEPITPEDLIE------YGTISPEQAAYLWLAIEA-RKSIIICGGTASGKTTL-LNALLDFIPP---EERIVTIED 178 (312)
T ss_pred EcCCCCCCCHHHHhh------cCCCCHHHHHHHHHHHHc-CCcEEEECCCCCCHHHH-HHHHHHhCCc---hhcEEEEec
Confidence 344555555554432 234667776655555443 28999999999999985 5566655543 235666666
Q ss_pred CHHH
Q 011667 180 TREL 183 (480)
Q Consensus 180 t~~L 183 (480)
|.++
T Consensus 179 t~E~ 182 (312)
T COG0630 179 TPEL 182 (312)
T ss_pred cccc
Confidence 6655
No 429
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.49 E-value=1.8 Score=44.61 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+-.|+.||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3468999999999986544
No 430
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.25 E-value=3.3 Score=42.90 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+..++.||.|.|||.++-+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999986444
No 431
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.24 E-value=1 Score=43.80 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=25.9
Q ss_pred hHHHHhhcccccC-CCCccEEEEccCCCccchHhHHHHhhccCC
Q 011667 125 SKIQAISLPMILT-PPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 125 ~~~Q~~~i~~il~-~~~~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.++=.++|..++- |.++..++.||.|+|||.. +-.+.+.+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 3444455544432 2348999999999999974 3335555544
No 432
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=87.21 E-value=0.62 Score=43.00 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=29.6
Q ss_pred hcccccCC---CCccEEEEccCCCccchHhHHHHhhc-cCC--CCCCCeEEEEecCH
Q 011667 131 SLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSR-VDP--NLKAPQALCICPTR 181 (480)
Q Consensus 131 ~i~~il~~---~~~~~lv~a~TGsGKTl~~~l~il~~-l~~--~~~~~~~lil~Pt~ 181 (480)
.+..+|.| .+.-.=++|+.|||||-..+-.+++. +.. ...+.++++|.-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 34444544 22556699999999996433333333 221 23456899987443
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.21 E-value=0.32 Score=33.64 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
...++.+++|||||..
T Consensus 24 ~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTL 39 (62)
T ss_pred cEEEEECCCCCCHHHH
Confidence 5799999999999984
No 434
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.20 E-value=4.1 Score=42.98 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=62.5
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
.+...+....|...+.-.+.+.. ....++||.|++++.+..++..+... ++.+..+||+.+...+...+
T Consensus 46 vl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l--- 122 (629)
T PRK11634 46 VLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL--- 122 (629)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---
Confidence 34445556666544322122211 13457899999999999988776542 78899999998766554433
Q ss_pred hcCCCcEEEEcc-----cccc-CCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTD-----VLAR-GFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~-----~~~~-Gldi~~v~~Vi~ 402 (480)
+ ....|+|+|. .+.+ .+++.++.+||.
T Consensus 123 ~-~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 123 R-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred c-CCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 2 4568999994 3333 467888888874
No 435
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.15 E-value=0.55 Score=46.28 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=29.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
+++++.|.||||||.+ +-.++..+... +.+++|.=|.-+.....+
T Consensus 16 ~~~li~G~~GsGKT~~-i~~ll~~~~~~--g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 16 RHILIIGATGSGKTQA-IRHLLDQIRAR--GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp G-EEEEE-TTSSHHHH-HHHHHHHHHHT--T-EEEEEEETTHHHHHH-
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHc--CCEEEEEECCchHHHHhc
Confidence 8999999999999974 55666655443 456777778877655433
No 436
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=87.00 E-value=1 Score=48.30 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
+.-..+|-|.++|-.-.+. ..+.+.+|+|+|||-. ..-++..+....+.++++|++.+.....|..+.+.+.
T Consensus 735 n~v~ft~~qveai~sg~qp--gltmvvgppgtgktd~-avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQP--GLTMVVGPPGTGKTDV-AVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCC--CceeeecCCCCCCcch-hhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 4445778899988877776 7999999999999976 3445666666667889999998887777776665543
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.83 E-value=0.86 Score=41.76 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=19.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
+.+++.|+.|+|||.. +--+++.+..
T Consensus 17 qr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 8999999999999974 2334444443
No 438
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=86.81 E-value=1.4 Score=45.95 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=38.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH--HHHHHHHHHHHHHhc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR--ELAIQNLEVLRKMGK 196 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~--~La~q~~~~~~~~~~ 196 (480)
.+.+|.|+||+|||..+.+.+.+.+.. +..++++=|-. ++...++..++..+.
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~---g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR---GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 689999999999999877766666653 44677777876 455566666666554
No 439
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.80 E-value=4.3 Score=42.64 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=64.9
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
.++..+....|..... +..+. ..+.+||.++.+.-+......|...|+.+..+|++++..++..++.....|..++|
T Consensus 31 vlv~~PTG~GKTl~y~--lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il 107 (591)
T TIGR01389 31 VLVVMPTGGGKSLCYQ--VPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLL 107 (591)
T ss_pred EEEEcCCCccHhHHHH--HHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 3555666666755432 11112 45788999999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q 011667 383 ISTD 386 (480)
Q Consensus 383 v~T~ 386 (480)
++|.
T Consensus 108 ~~tp 111 (591)
T TIGR01389 108 YVAP 111 (591)
T ss_pred EECh
Confidence 9885
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=86.69 E-value=1.2 Score=40.45 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=31.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
..+++.+++|+|||...+-.+...+. ++.++++++.. +-..+..+.+..++
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 78999999999999863332332222 24577888843 33345555555443
No 441
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=0.74 Score=46.73 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=35.8
Q ss_pred CCCCcccCCCCHHHHHHHHhh--cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++.|--.++...|... ..++.|--++.-.+. . . ..++++||+|+||||.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~--~-P--sGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID--A-P--SGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC--C-C--CceEEeCCCCccHHHH
Confidence 578999999887777766532 134444444433332 2 1 4699999999999984
No 442
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.41 E-value=2.6 Score=44.06 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.4
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+.||.|+|||.+...
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999986444
No 443
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.41 E-value=0.48 Score=39.41 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=24.0
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
-.++.||.|||||..|.......+ ..++++.+.++|.|
T Consensus 4 l~IvaG~NGsGKstv~~~~~~~~~-------~~~~~VN~D~iA~~ 41 (187)
T COG4185 4 LDIVAGPNGSGKSTVYASTLAPLL-------PGIVFVNADEIAAQ 41 (187)
T ss_pred EEEEecCCCCCceeeeeccchhhc-------CCeEEECHHHHhhh
Confidence 458899999999997765433221 13555555555544
No 444
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.38 E-value=2.1 Score=38.97 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCC----CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCccccccccccc
Q 011667 352 GYEVTTIMGATIQEERDKIVKEFKDGL----TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 427 (480)
Q Consensus 352 ~~~~~~l~~~~~~~~r~~~~~~f~~g~----~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~ 427 (480)
++.+..++++.+... -.|.++. ..|+|+-+.++||+.+++..+......+ ....++.||.---
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s--------~~~DTL~QmgRwF 176 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNS--------KQYDTLMQMGRWF 176 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCC--------chHHHHHHHhhcc
Confidence 588888887655433 3344443 7899999999999999999999888777 5566677764222
Q ss_pred -ccCCCceeEEEEee
Q 011667 428 -GRFGRKGVVFNLLM 441 (480)
Q Consensus 428 -gR~g~~g~~~~l~~ 441 (480)
-|.|=.+.|-++++
T Consensus 177 GYR~gY~dl~Ri~~~ 191 (239)
T PF10593_consen 177 GYRPGYEDLCRIYMP 191 (239)
T ss_pred cCCcccccceEEecC
Confidence 34443456665554
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.37 E-value=1.1 Score=46.41 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=20.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
+-+.+.||+|||||. ++-++..+.....|
T Consensus 362 ~~vaIvG~SGsGKST--Ll~lL~g~~~p~~G 390 (529)
T TIGR02868 362 ERVAILGPSGSGKST--LLMLLTGLLDPLQG 390 (529)
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCCCCCc
Confidence 889999999999998 44455555443333
No 446
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.32 E-value=1.7 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.8
Q ss_pred CCCCccEEEEccCCCccchHh
Q 011667 137 TPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.+...++++.||+|+|||...
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred cCCCCceEEECCCCCCHHHHH
Confidence 333469999999999999853
No 447
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.26 E-value=0.78 Score=45.67 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=29.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
+++++.|+||||||.. +..++..+... +.+++|+=|..++...
T Consensus 43 ~h~~i~g~tGsGKt~~-i~~l~~~~~~~--~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 43 AHTMIIGTTGTGKTTQ-IRELLASIRAR--GDRAIIYDPNGGFVSK 85 (410)
T ss_pred ccEEEEcCCCCCHHHH-HHHHHHHHHhc--CCCEEEEeCCcchhHh
Confidence 7999999999999985 33334333222 3467777788776543
No 448
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=86.23 E-value=1.2 Score=42.94 Aligned_cols=41 Identities=15% Similarity=-0.112 Sum_probs=25.8
Q ss_pred CccEEEEccCCCccchHhHHHHhhc-cCC--CCCCCeEEEEecC
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSR-VDP--NLKAPQALCICPT 180 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~-l~~--~~~~~~~lil~Pt 180 (480)
+.-+.+.|++|+|||...+-.+++. +.. ...+.+++||.-.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 3677899999999997544333333 221 2223588888763
No 449
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.19 E-value=1.7 Score=42.22 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||.|.|||..+
T Consensus 46 ha~L~~G~~G~GKttlA 62 (351)
T PRK09112 46 HALLFEGPEGIGKATLA 62 (351)
T ss_pred eeEeeECCCCCCHHHHH
Confidence 36899999999999753
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.14 E-value=0.76 Score=43.77 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.+++++|+||||||..
T Consensus 145 ~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 145 KNIIISGGTGSGKTTF 160 (308)
T ss_pred CEEEEECCCCCCHHHH
Confidence 8999999999999984
No 451
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.09 E-value=6.4 Score=39.83 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=52.0
Q ss_pred cEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc------ccccCCCCCCCCE
Q 011667 330 QTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD------VLARGFDQQQVNL 399 (480)
Q Consensus 330 ~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~------~~~~Gldi~~v~~ 399 (480)
++||.+++++.|..+.+.+... ++.+..++|+.+...+...+ .+..+|+|||. .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6899999999999888877653 67888899998866543322 36779999995 1235667888888
Q ss_pred EEE
Q 011667 400 IVN 402 (480)
Q Consensus 400 Vi~ 402 (480)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 885
No 452
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.97 E-value=0.85 Score=43.96 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=34.5
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
++.+...+..+..+ ..+++++++||||||.. +-.++..+.. ..+++++--+.||
T Consensus 164 ~~~~~~~L~~~v~~-~~~ili~G~tGsGKTTl-l~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 164 PPGVARLLRAIVAA-RLAFLISGGTGSGKTTL-LSALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHHHHHHhC-CCeEEEECCCCCCHHHH-HHHHHccCCC---CCcEEEECCccee
Confidence 45566666665554 27999999999999974 2233334332 3356666666666
No 453
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.95 E-value=4 Score=42.61 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=52.3
Q ss_pred CcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc--CCCCCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLAR--GFDQQQV 397 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~~--Gldi~~v 397 (480)
.++||.+++++.+..+++.+.. .++.+..+||+.+...+...+. +..+|||+|. .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 5799999999999988887755 3678999999998776655443 4578999994 2222 3667777
Q ss_pred CEEEE
Q 011667 398 NLIVN 402 (480)
Q Consensus 398 ~~Vi~ 402 (480)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 77764
No 454
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=85.93 E-value=10 Score=37.87 Aligned_cols=161 Identities=21% Similarity=0.290 Sum_probs=93.2
Q ss_pred EEEEcCchhHHHHHHHHHHH-HhcccCCcEEEEeCchhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHhcC
Q 011667 303 YKVYCPDELAKVMVIRDRIF-ELGEKMGQTIIFVRTKNSASALHKALKDF-GY---EVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~-~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
..+..|....|...-.-.+. .+....+++|+..+|+-.+..-+..+.+. ++ .+..+.|..++.+|..... .+
T Consensus 32 tLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~---~~ 108 (542)
T COG1111 32 TLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA---KK 108 (542)
T ss_pred eEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh---hC
Confidence 34455666666433221122 22224457999999998888777777543 43 6789999999999987653 33
Q ss_pred CCcEEEEc------cccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEe-eCCccHHHHH
Q 011667 378 LTQVLIST------DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL-MDGDDMIIME 450 (480)
Q Consensus 378 ~~~iLv~T------~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~-~~~~~~~~~~ 450 (480)
+|+|+| |+.+--+|+.++.++|.-.+-..-+ --.|+.-+-.--|....-..+-+- ++..+...+.
T Consensus 109 --kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG------nyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~ 180 (542)
T COG1111 109 --KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG------NYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQ 180 (542)
T ss_pred --CEEEeccHHHHhHHhcCccChHHceEEEechhhhccC------cchHHHHHHHHHHhccCceEEEEecCCCCCHHHHH
Confidence 699999 5566778999999999544432111 122444443334433332333222 3334555666
Q ss_pred HHHHHhCCcceecC-CCHHHHHHHH
Q 011667 451 KIERYFDIKVTEVR-NSDEDFKAAL 474 (480)
Q Consensus 451 ~i~~~l~~~~~~~~-~~~~~~~~~~ 474 (480)
.+.+.|++.--++. ....+++.++
T Consensus 181 eV~~nLgIe~vevrTE~d~DV~~Yv 205 (542)
T COG1111 181 EVVENLGIEKVEVRTEEDPDVRPYV 205 (542)
T ss_pred HHHHhCCcceEEEecCCCccHHHhh
Confidence 66666665544443 3334444443
No 455
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.86 E-value=1.1 Score=46.65 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred ChHHHHhhcccccC--------CCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 124 PSKIQAISLPMILT--------PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 124 p~~~Q~~~i~~il~--------~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
++..|-+++-..++ |..-..++....|-||-....--|+....+. ..++|++.-+..|-....+.++.++
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchhhcC
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCh---------------HHHHHHHhcCccccCceEEEEEcCchhhh
Q 011667 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTP---------------GTIKKWMSAKKLGFSRLKILVYDEADHML 260 (480)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp---------------~~l~~~l~~~~~~~~~~~~lViDEah~l~ 260 (480)
..- .....+........+-.......-.|+++|+ .||..+++--.-.|.. +||+||||+-.
T Consensus 343 A~~--I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG--vIvfDECHkAK 418 (1300)
T KOG1513|consen 343 ATG--IAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG--VIVFDECHKAK 418 (1300)
T ss_pred CCC--ccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce--eEEehhhhhhc
Q ss_pred h--------------------------hheeeecc
Q 011667 261 D--------------------------EVLLFSAT 269 (480)
Q Consensus 261 ~--------------------------~~~~~SAT 269 (480)
+ +++.-|||
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASAT 453 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASAT 453 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeecc
No 456
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.84 E-value=2.9 Score=43.87 Aligned_cols=45 Identities=29% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCC-CccEEEEccCCCccchHhHH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
+.+|+++--.+.+.+.|.. .+. .|. .+..|++||.|+|||.+..+
T Consensus 13 P~~f~~viGq~~~~~~L~~--------~i~--------~~~l~hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKN--------AIA--------TNKLAHAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred CCCHHHhcCcHHHHHHHHH--------HHH--------cCCCCeeEEEECCCCCCHHHHHHH
Confidence 4566666556666655543 111 121 14589999999999985433
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.73 E-value=0.77 Score=43.22 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=33.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe-cC-HHHHHHHHHHHHHHhcccCceeeE
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC-PT-RELAIQNLEVLRKMGKHTGITSEC 204 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~-Pt-~~La~q~~~~~~~~~~~~~~~~~~ 204 (480)
..+++.|-.|+|||+... -+...+.. .+.++++.. -| |+-|.. +++.|+...++.+..
T Consensus 140 ~Vil~vGVNG~GKTTTIa-KLA~~l~~--~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~ 199 (340)
T COG0552 140 FVILFVGVNGVGKTTTIA-KLAKYLKQ--QGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEEEecCCCchHhHHH-HHHHHHHH--CCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEc
Confidence 468899999999998522 22222222 244555554 44 555544 455555556665433
No 458
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.68 E-value=3.5 Score=40.97 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=57.0
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-------cccCCCCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-------LARGFDQQ 395 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-------~~~Gldi~ 395 (480)
...++||.|++++.+-.++....+. .+.++..-|+++-..+..+++ ...+|+|||+- -+.++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 3458999999999887777665443 788999999999998888875 55689999963 25688888
Q ss_pred CCCEEEE
Q 011667 396 QVNLIVN 402 (480)
Q Consensus 396 ~v~~Vi~ 402 (480)
++.++|.
T Consensus 327 siEVLvl 333 (691)
T KOG0338|consen 327 SIEVLVL 333 (691)
T ss_pred ceeEEEe
Confidence 8888874
No 459
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=85.61 E-value=2 Score=35.69 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
..+.+.+++|+|||. ++-++..+.
T Consensus 27 e~~~i~G~nGsGKSt--Ll~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKST--LLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHH--HHHHHcCCC
Confidence 789999999999997 334444443
No 460
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.59 E-value=8.4 Score=32.49 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=64.8
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhc-c-cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHH-HHHHHHHHH
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELG-E-KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQE-ERDKIVKEF 374 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~-~-~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~-~r~~~~~~f 374 (480)
+..+..+...+|.....-.+.... + ...++|+.++++..+..+...+... ++.+..+|++.+.. +....+
T Consensus 16 ~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 92 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL--- 92 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---
T ss_pred CEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---
Confidence 345666777777665543333322 2 2348999999999999999888654 46789999988854 333333
Q ss_pred hcCCCcEEEEccc-----c-ccCCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDV-----L-ARGFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~-----~-~~Gldi~~v~~Vi~ 402 (480)
.+..+|+|+|.. . ...+++..+++||.
T Consensus 93 -~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 -SNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp -HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred -cccccccccCcchhhccccccccccccceeecc
Confidence 677899999942 1 23457777888775
No 461
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.57 E-value=0.84 Score=43.91 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.+|.|+|||+.
T Consensus 149 lgllL~GPPGcGKTll 164 (413)
T PLN00020 149 LILGIWGGKGQGKSFQ 164 (413)
T ss_pred eEEEeeCCCCCCHHHH
Confidence 6799999999999985
No 462
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.55 E-value=1.4 Score=40.76 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=14.6
Q ss_pred EEEEccCCCccchHhHHHH
Q 011667 143 LIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~i 161 (480)
+-..|+||+||..+.-+-+
T Consensus 113 LSfHG~tGTGKN~Va~iiA 131 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEIIA 131 (344)
T ss_pred EEecCCCCCchhHHHHHHH
Confidence 4568999999998765543
No 463
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.52 E-value=1.4 Score=39.77 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=30.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
..+++.|++|+|||......+.+.+.. +..+++++- .+...++.+.+..+
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 789999999999997544333333332 446777764 23344554444443
No 464
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.40 E-value=7.4 Score=39.62 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.1
Q ss_pred cCceEEEEEcCchhhhh
Q 011667 245 FSRLKILVYDEADHMLD 261 (480)
Q Consensus 245 ~~~~~~lViDEah~l~~ 261 (480)
..+.+++||||||.|..
T Consensus 117 ~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cCCeeEEEEEChhhcCH
Confidence 46788999999998754
No 465
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.15 E-value=1.1 Score=39.44 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=22.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
.-+.++||.|||||+ ++=.++.+.....|
T Consensus 29 evv~iiGpSGSGKST--lLRclN~LE~~~~G 57 (240)
T COG1126 29 EVVVIIGPSGSGKST--LLRCLNGLEEPDSG 57 (240)
T ss_pred CEEEEECCCCCCHHH--HHHHHHCCcCCCCc
Confidence 789999999999998 66677777654444
No 466
>PRK09183 transposase/IS protein; Provisional
Probab=85.10 E-value=1 Score=41.68 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=27.0
Q ss_pred ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 135 ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
+-.| .++++.||+|+|||............ .+..++++. ..+|..+
T Consensus 99 i~~~--~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERN--ENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEe-HHHHHHH
Confidence 3345 89999999999999753332222222 244566554 3345444
No 467
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=84.83 E-value=2.2 Score=43.08 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred ChHHHHhhcccccC----CC----CccEEEEccCCCccchHhH-HHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 124 PSKIQAISLPMILT----PP----YRNLIAQARNGSGKTTCFV-LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 124 p~~~Q~~~i~~il~----~~----~~~~lv~a~TGsGKTl~~~-l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.-|+|.-.+-.++- +. -+-.++..|-+-|||.... +.....+.....+..+.|+.|+.+-+.+.+..++..
T Consensus 62 l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~m 141 (546)
T COG4626 62 LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDM 141 (546)
T ss_pred cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHH
Confidence 56888877776661 11 1357888999999997433 322333333356668899999999888888877765
Q ss_pred hc
Q 011667 195 GK 196 (480)
Q Consensus 195 ~~ 196 (480)
..
T Consensus 142 v~ 143 (546)
T COG4626 142 VK 143 (546)
T ss_pred HH
Confidence 44
No 468
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.82 E-value=1 Score=40.72 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=28.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
+++.|.|.||||||..... ++..+.. ..+..++|+=|.-+=+
T Consensus 24 ~H~~I~G~TGsGKS~~~~~-ll~~l~~-~~~~~~ii~D~~GEY~ 65 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKV-LLEELLK-KKGAKVIIFDPHGEYA 65 (229)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHh-cCCCCEEEEcCCCcch
Confidence 7899999999999986444 4444442 2344677777876543
No 469
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.77 E-value=1.9 Score=41.44 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=23.8
Q ss_pred ChHHHHhhccccc----CC-CCccEEEEccCCCccchHhHH
Q 011667 124 PSKIQAISLPMIL----TP-PYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 124 p~~~Q~~~i~~il----~~-~~~~~lv~a~TGsGKTl~~~l 159 (480)
.+|+|...|..+. +| -.+-.++.||.|.||+..+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 4466666665554 22 124688999999999976433
No 470
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.71 E-value=8.4 Score=38.45 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=53.9
Q ss_pred cCCcE-EEEeCchhhHHHHHHH---H-HhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc--c----ccCCCCC
Q 011667 327 KMGQT-IIFVRTKNSASALHKA---L-KDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV--L----ARGFDQQ 395 (480)
Q Consensus 327 ~~~~~-lVf~~s~~~~~~l~~~---L-~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~--~----~~Gldi~ 395 (480)
..+|+ ||.|+|++.|..+... | +..|+++.++||+++..++..-++ -..-|+|||.- + -.++|+.
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccce
Confidence 34565 6678999888777544 4 345899999999999998877765 33479999952 2 3588999
Q ss_pred CCCEEEE
Q 011667 396 QVNLIVN 402 (480)
Q Consensus 396 ~v~~Vi~ 402 (480)
.++++|.
T Consensus 370 rvS~LV~ 376 (731)
T KOG0339|consen 370 RVSYLVL 376 (731)
T ss_pred eeeEEEE
Confidence 9998775
No 471
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.47 E-value=1.6 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=34.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
+.+++.|++|||||+-.+-.+.+.+.. +.++++++- .+...++.+.+..++.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~-~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVST-EESPEELLENARSFGW 75 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEe-cCCHHHHHHHHHHcCC
Confidence 899999999999997544444444333 445666664 3455666666666544
No 472
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.37 E-value=1.6 Score=39.87 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=27.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe---cCHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC---PTRELAIQ 186 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~---Pt~~La~q 186 (480)
.-+++.|++|+|||...+--+++..... +..+++++ |..+++..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCHHHHHHH
Confidence 7889999999999975333333333221 45788887 34444443
No 473
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=1.8 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=18.0
Q ss_pred CccEEEEccCCCccchHhHHHHhhcc
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
++-+++.||+|+|||-. +-++.+.+
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhh
Confidence 37899999999999963 33344444
No 474
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.07 E-value=10 Score=37.96 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=51.5
Q ss_pred CcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c-ccCCCCCCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----L-ARGFDQQQVN 398 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~-~~Gldi~~v~ 398 (480)
.++||.+++++.|..+++.+.. .++.+..++|+.+.......+ ....+|||+|.- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999988766543 478899999988765544333 245689999962 1 2356788888
Q ss_pred EEEE
Q 011667 399 LIVN 402 (480)
Q Consensus 399 ~Vi~ 402 (480)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8885
No 475
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=83.99 E-value=1.4 Score=39.94 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
.-+++.||.|||||. ++-+++++.....|
T Consensus 28 ef~vliGpSGsGKTT--tLkMINrLiept~G 56 (309)
T COG1125 28 EFLVLIGPSGSGKTT--TLKMINRLIEPTSG 56 (309)
T ss_pred eEEEEECCCCCcHHH--HHHHHhcccCCCCc
Confidence 788999999999998 67889998765544
No 476
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=0.8 Score=44.51 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
-|+|+.+|||||||+.+
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 57999999999999843
No 477
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=83.37 E-value=1.7 Score=41.55 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=22.1
Q ss_pred hHHHHhhccccc----CCC-CccEEEEccCCCccchHhHH
Q 011667 125 SKIQAISLPMIL----TPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 125 ~~~Q~~~i~~il----~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
+|+|...+..+. +|. ++-.++.||.|.||+..+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 455555554443 331 24678999999999975433
No 478
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.28 E-value=2.1 Score=40.73 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=22.8
Q ss_pred ChHHHHhhccccc----CC-CCccEEEEccCCCccchHhHH
Q 011667 124 PSKIQAISLPMIL----TP-PYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 124 p~~~Q~~~i~~il----~~-~~~~~lv~a~TGsGKTl~~~l 159 (480)
+.|+|...+..+. +| -.+-.++.||.|.||+..+..
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4456655554443 23 124689999999999975433
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.17 E-value=0.64 Score=37.12 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=12.7
Q ss_pred EEEEccCCCccchH
Q 011667 143 LIAQARNGSGKTTC 156 (480)
Q Consensus 143 ~lv~a~TGsGKTl~ 156 (480)
+++.|++|||||..
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999985
No 480
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=82.97 E-value=5 Score=37.98 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=17.5
Q ss_pred ccCCCCccEEEEccCCCccchH
Q 011667 135 ILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~ 156 (480)
++.|..+.+++.||-|||||..
T Consensus 44 ~~~gEsnsviiigprgsgkT~l 65 (408)
T KOG2228|consen 44 ILHGESNSVIIIGPRGSGKTIL 65 (408)
T ss_pred HHhcCCCceEEEccCCCCceEe
Confidence 3445458999999999999963
No 481
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=82.65 E-value=1.5 Score=39.03 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=25.8
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
+.-+.+.|++|+|||...+-.+.+.... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 3789999999999998654444433322 4567777654
No 482
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=82.53 E-value=0.68 Score=45.72 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=19.7
Q ss_pred hhcccccCCCCccEEEEccCCCccchH
Q 011667 130 ISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 130 ~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+++.....| ++++++.||+|||||+.
T Consensus 189 rAleiAAAG-gHnLl~~GpPGtGKTml 214 (490)
T COG0606 189 RALEIAAAG-GHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHHHHHHhc-CCcEEEecCCCCchHHh
Confidence 444444455 48999999999999973
No 483
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.48 E-value=0.71 Score=42.81 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=19.3
Q ss_pred hcccccCCCCccEEEEccCCCccchHh
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
++..+..| +.+++.||+|+|||..+
T Consensus 14 ~l~~l~~g--~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSG--YPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcC--CeEEEEcCCCCCHHHHH
Confidence 33444556 89999999999999854
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=82.47 E-value=11 Score=32.18 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=49.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
..+++.|++|||||..+...+.. . +..++++......-.++.+.+......-+-
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~-~-----~~~~~~iat~~~~~~e~~~ri~~h~~~R~~-------------------- 55 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ-S-----GLQVLYIATAQPFDDEMAARIAHHRQRRPA-------------------- 55 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH-c-----CCCcEeCcCCCCChHHHHHHHHHHHhcCCC--------------------
Confidence 45899999999999764433322 1 224566654444444444444332111000
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhhhee
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEVLL 265 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 265 (480)
.=..+-.|..|...+... .+.-++|++|=...+....+.
T Consensus 56 ---~w~t~E~~~~l~~~i~~~---~~~~~~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 56 ---HWQTVEEPLDLAELLRAD---AAPGRCVLVDCLTTWVTNLLF 94 (170)
T ss_pred ---CCeEecccccHHHHHHhh---cCCCCEEEehhHHHHHHHHhc
Confidence 013344555565555431 233457888888877665543
No 485
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=82.44 E-value=0.9 Score=39.24 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~i 161 (480)
+.+++.||.|||||..|....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHh
Confidence 689999999999998654443
No 486
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=82.32 E-value=2.6 Score=38.32 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=32.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.-+++.|++|+|||......+...+. .+.+++++.=-. -..++.+.+..++
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 78999999999999764444444333 255777777433 3345555565553
No 487
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=82.23 E-value=3.2 Score=45.05 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 348 ~~lll~GppG~GKT~l 363 (775)
T TIGR00763 348 PILCLVGPPGVGKTSL 363 (775)
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999975
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.88 E-value=2.6 Score=37.96 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
..+++.|++|+|||...+-.+...+.. +..+++++-.. -..++.+.+..+
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CHHHHHHHHHHc
Confidence 788999999999987533334333332 45677776543 456666666554
No 489
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.77 E-value=1.9 Score=43.98 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=39.8
Q ss_pred hcccccCC---CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 131 SLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 131 ~i~~il~~---~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.+..++.| .+..+++.+|+|+|||+..+-.+.+.+. .+.++++++ ..+-..|+...+..++
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34445544 2468999999999999864444433333 255788877 4455677777777764
No 490
>PHA00012 I assembly protein
Probab=81.73 E-value=3.5 Score=38.92 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEccCCCccchHhHHHHhhccCC
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
-++.|..|||||+..+.-+...+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999877666666554
No 491
>PLN02165 adenylate isopentenyltransferase
Probab=81.66 E-value=1.1 Score=42.68 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.5
Q ss_pred cCCCCccEEEEccCCCccchHhH
Q 011667 136 LTPPYRNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 136 l~~~~~~~lv~a~TGsGKTl~~~ 158 (480)
.+..+..+++.||||||||..+.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSV 61 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHH
Confidence 33334789999999999997543
No 492
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=81.57 E-value=0.65 Score=40.85 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=16.6
Q ss_pred hhcccccCCCCccEEEEccCCCccchH
Q 011667 130 ISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 130 ~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+|+.....| ++++++.||.|+|||+.
T Consensus 13 rAL~iAAaG-~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 13 RALEIAAAG-GHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHC-C--EEEES-CCCTHHHH
T ss_pred HHHHHHHcC-CCCeEEECCCCCCHHHH
Confidence 444444445 37999999999999974
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=81.51 E-value=3.6 Score=41.47 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=32.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.-+++.|++|+|||...+..+ ..+.. .+.+++++..- +-..|+.....++
T Consensus 95 svilI~G~pGsGKTTL~lq~a-~~~a~--~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVA-CQLAK--NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHh--cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 789999999999998644333 32322 23478888854 3445665555544
No 494
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=81.51 E-value=3.5 Score=40.08 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=29.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
+.+.+.|+.|.|||+..-+ ..+.+... ...++ .-.+.+.++++.+..+.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~-f~~~lp~~-~k~R~----HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDL-FYDSLPIK-RKRRV----HFHEFMLDVHSRLHQLR 111 (362)
T ss_pred ceEEEECCCCCchhHHHHH-HHHhCCcc-ccccc----cccHHHHHHHHHHHHHh
Confidence 7899999999999984222 23333221 12122 33467777777777764
No 495
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=81.48 E-value=1.4 Score=46.26 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (480)
..+.+.+++ -+- .+++-...+|.....-.+++++.|.||||||.+ +--++..+.. ++.+++|.=|+-+.+...
T Consensus 157 ~~l~k~lk~-~~~--~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~--RGdrAIIyD~~GeFv~~F 229 (732)
T PRK13700 157 KDVARMLKK-DGK--DSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQ--RGDMVVIYDRSGEFVKSY 229 (732)
T ss_pred HHHHHHHHh-cCC--CCCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHH--cCCeEEEEeCCCchHHHh
Confidence 445555544 332 334444455544333238999999999999986 4556655543 345666666766665543
No 496
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=81.26 E-value=0.82 Score=36.76 Aligned_cols=14 Identities=43% Similarity=0.415 Sum_probs=12.5
Q ss_pred EEEEccCCCccchH
Q 011667 143 LIAQARNGSGKTTC 156 (480)
Q Consensus 143 ~lv~a~TGsGKTl~ 156 (480)
+++.|++|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57899999999985
No 497
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=81.26 E-value=23 Score=38.06 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=14.2
Q ss_pred eEEEEEcCchhhhh-------hheeeeccccH
Q 011667 248 LKILVYDEADHMLD-------EVLLFSATFNE 272 (480)
Q Consensus 248 ~~~lViDEah~l~~-------~~~~~SAT~~~ 272 (480)
+.+..+..++-|.+ .+++.|.|+.+
T Consensus 461 i~~wcf~p~~sf~d~~~k~vrsIiLtSGTLsP 492 (945)
T KOG1132|consen 461 INFWCFSPGYSFRDLLGKGVRSIILTSGTLSP 492 (945)
T ss_pred eeeeecCcchhHHHHhcccceeEEEecccccC
Confidence 34556666665544 25666776653
No 498
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=81.09 E-value=1.9 Score=37.70 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 223 TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 223 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
..++.|+||+|+..+++...+..+.+.+||+|=.-
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s~ 230 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWSW 230 (271)
T ss_pred ceeEeecCcHHHHHHHHhcCCCCCcceeEEeeccc
Confidence 35789999999999999988999999999998543
No 499
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=81.05 E-value=1.8 Score=40.90 Aligned_cols=55 Identities=25% Similarity=0.169 Sum_probs=31.9
Q ss_pred ccccCC--CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE---ecCHHHHHHHHHH
Q 011667 133 PMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI---CPTRELAIQNLEV 190 (480)
Q Consensus 133 ~~il~~--~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil---~Pt~~La~q~~~~ 190 (480)
+.+|.| .+.-.++.||||||||.-..--.|....+ |...|+- .|..-|+..+..+
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q---GVnTLwgSFEi~n~rla~~mL~Q 323 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ---GVNTLWGSFEIPNKRLAHWMLVQ 323 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh---hhhheeeeeecchHHHHHHHHHH
Confidence 444555 23568999999999997433333333333 4444544 3777677654433
No 500
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=80.99 E-value=2.5 Score=36.23 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=30.7
Q ss_pred EEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+++.|++|||||.-+.-.+.. .+.+++++.-...+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999754433322 244788888777666666666555
Done!