Query 011667
Match_columns 480
No_of_seqs 294 out of 2596
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 12:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.4E-62 4.9E-67 490.9 31.9 361 90-467 46-431 (434)
2 3fmp_B ATP-dependent RNA helic 100.0 1.7E-60 5.8E-65 483.2 20.9 371 93-473 85-477 (479)
3 3fht_A ATP-dependent RNA helic 100.0 1.2E-57 4.2E-62 454.0 38.7 372 92-473 17-410 (412)
4 3pey_A ATP-dependent RNA helic 100.0 1.8E-57 6.2E-62 450.1 39.0 368 99-477 4-392 (395)
5 2j0s_A ATP-dependent RNA helic 100.0 2.3E-58 7.9E-63 458.9 29.7 355 97-467 34-406 (410)
6 2i4i_A ATP-dependent RNA helic 100.0 8.8E-58 3E-62 455.8 29.1 360 92-467 7-406 (417)
7 3eiq_A Eukaryotic initiation f 100.0 5.3E-57 1.8E-61 449.7 30.0 357 98-469 38-412 (414)
8 1xti_A Probable ATP-dependent 100.0 1.4E-55 4.9E-60 436.0 31.7 353 99-466 7-380 (391)
9 1s2m_A Putative ATP-dependent 100.0 4E-55 1.4E-59 434.1 33.0 352 98-467 19-388 (400)
10 1fuu_A Yeast initiation factor 100.0 3.7E-56 1.3E-60 440.6 13.6 353 98-467 19-389 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 4.7E-54 1.6E-58 445.1 27.6 355 99-464 16-418 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.4E-53 4.6E-58 441.4 28.3 347 107-464 79-469 (563)
13 1hv8_A Putative ATP-dependent 100.0 1.6E-52 5.5E-57 410.4 32.3 343 99-464 5-365 (367)
14 3fho_A ATP-dependent RNA helic 100.0 3.8E-54 1.3E-58 438.0 19.3 368 98-476 117-504 (508)
15 2v1x_A ATP-dependent DNA helic 100.0 1.2E-50 3.9E-55 416.1 28.9 320 102-444 23-375 (591)
16 2z0m_A 337AA long hypothetical 100.0 1.6E-50 5.3E-55 391.7 27.4 318 107-458 1-336 (337)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.1E-49 7.1E-54 403.0 23.9 318 100-444 2-344 (523)
18 3l9o_A ATP-dependent RNA helic 100.0 2.1E-49 7.1E-54 431.3 24.1 331 99-452 161-606 (1108)
19 3oiy_A Reverse gyrase helicase 100.0 6.6E-49 2.3E-53 391.0 19.4 321 109-464 8-385 (414)
20 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-45 1.2E-49 388.1 30.7 335 99-464 7-427 (715)
21 1tf5_A Preprotein translocase 100.0 1.6E-46 5.4E-51 385.4 19.5 305 118-445 79-547 (844)
22 3tbk_A RIG-I helicase domain; 100.0 3.8E-46 1.3E-50 385.4 19.8 337 123-476 4-544 (555)
23 2ykg_A Probable ATP-dependent 100.0 5.5E-46 1.9E-50 394.1 19.9 341 114-470 5-547 (696)
24 2zj8_A DNA helicase, putative 100.0 2.3E-45 8E-50 389.2 24.6 332 101-464 2-405 (720)
25 4a2p_A RIG-I, retinoic acid in 100.0 5.9E-46 2E-50 384.1 17.6 308 120-444 4-509 (556)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-45 5.6E-50 389.4 19.0 331 101-464 2-406 (702)
27 4ddu_A Reverse gyrase; topoiso 100.0 2.9E-45 9.8E-50 398.7 19.9 319 111-457 67-503 (1104)
28 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-45 6.3E-50 400.6 17.8 321 111-458 46-468 (1054)
29 4a2q_A RIG-I, retinoic acid in 100.0 1.4E-44 4.8E-49 386.9 21.7 312 119-444 244-750 (797)
30 2fsf_A Preprotein translocase 100.0 4E-44 1.4E-48 366.5 19.3 305 118-445 70-585 (853)
31 2xgj_A ATP-dependent RNA helic 100.0 8E-43 2.7E-47 376.5 29.0 304 118-452 82-508 (1010)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-43 8.9E-48 380.8 23.5 312 119-444 244-750 (936)
33 1nkt_A Preprotein translocase 100.0 7.6E-43 2.6E-47 357.3 23.0 309 114-445 103-619 (922)
34 1wp9_A ATP-dependent RNA helic 100.0 4.2E-42 1.4E-46 349.3 21.1 305 123-444 9-476 (494)
35 1gm5_A RECG; helicase, replica 100.0 5.4E-43 1.8E-47 366.5 13.9 312 109-442 355-696 (780)
36 4gl2_A Interferon-induced heli 100.0 6E-43 2.1E-47 371.0 14.3 336 123-474 7-555 (699)
37 4a4z_A Antiviral helicase SKI2 100.0 2.3E-41 8E-46 365.1 25.7 303 117-441 34-490 (997)
38 2eyq_A TRCF, transcription-rep 100.0 5.2E-41 1.8E-45 367.7 25.7 316 105-443 586-922 (1151)
39 4f92_B U5 small nuclear ribonu 100.0 6.5E-41 2.2E-45 376.6 24.1 328 107-444 911-1309(1724)
40 2jlq_A Serine protease subunit 100.0 1.4E-41 4.8E-46 340.0 15.9 270 120-442 1-310 (451)
41 2whx_A Serine protease/ntpase/ 100.0 6.1E-42 2.1E-46 352.4 12.1 298 105-456 155-493 (618)
42 2xau_A PRE-mRNA-splicing facto 100.0 5.8E-41 2E-45 353.6 19.7 325 98-443 70-443 (773)
43 4f92_B U5 small nuclear ribonu 100.0 2.1E-40 7.1E-45 372.6 25.2 318 120-447 76-477 (1724)
44 2oca_A DAR protein, ATP-depend 100.0 7.4E-40 2.5E-44 334.5 21.2 299 122-441 112-453 (510)
45 2wv9_A Flavivirin protease NS2 100.0 1.3E-40 4.3E-45 344.7 10.1 298 114-456 202-548 (673)
46 3o8b_A HCV NS3 protease/helica 100.0 7.1E-40 2.4E-44 333.8 13.6 276 126-464 220-538 (666)
47 1yks_A Genome polyprotein [con 100.0 7.8E-41 2.7E-45 333.0 4.5 269 134-456 4-314 (440)
48 2fwr_A DNA repair protein RAD2 100.0 9.3E-39 3.2E-43 323.2 14.8 281 123-444 93-455 (472)
49 2z83_A Helicase/nucleoside tri 100.0 1.4E-38 4.8E-43 318.7 13.2 259 133-443 16-313 (459)
50 3fmo_B ATP-dependent RNA helic 100.0 3.4E-36 1.1E-40 284.4 21.1 193 93-291 85-298 (300)
51 3jux_A Protein translocase sub 100.0 1.6E-35 5.6E-40 296.8 26.2 310 115-445 68-589 (822)
52 2v6i_A RNA helicase; membrane, 100.0 9.5E-37 3.3E-41 303.0 15.8 250 141-440 3-288 (431)
53 3h1t_A Type I site-specific re 100.0 4.5E-37 1.5E-41 319.0 12.2 286 123-432 178-545 (590)
54 3dmq_A RNA polymerase-associat 100.0 1.3E-35 4.5E-40 321.0 17.3 302 123-439 153-609 (968)
55 1z63_A Helicase of the SNF2/RA 100.0 7.3E-34 2.5E-38 289.4 26.4 296 123-443 37-453 (500)
56 3rc3_A ATP-dependent RNA helic 100.0 7.7E-34 2.6E-38 293.0 24.9 284 132-462 149-462 (677)
57 3fe2_A Probable ATP-dependent 100.0 1.9E-34 6.6E-39 264.8 13.9 198 91-293 20-240 (242)
58 3bor_A Human initiation factor 100.0 2.9E-33 9.9E-38 256.0 17.3 192 96-291 26-235 (237)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 7.4E-34 2.5E-38 262.9 13.0 201 98-303 21-252 (253)
60 1q0u_A Bstdead; DEAD protein, 100.0 4E-33 1.4E-37 252.1 16.0 189 99-292 3-213 (219)
61 1qde_A EIF4A, translation init 100.0 1.5E-32 5.1E-37 249.4 19.1 191 97-293 11-219 (224)
62 3iuy_A Probable ATP-dependent 100.0 5.1E-33 1.7E-37 253.1 14.2 191 93-289 12-227 (228)
63 1vec_A ATP-dependent RNA helic 100.0 1.3E-32 4.6E-37 246.3 16.7 184 100-288 3-205 (206)
64 2oxc_A Probable ATP-dependent 100.0 8.1E-33 2.8E-37 252.0 15.3 193 92-290 16-228 (230)
65 3dkp_A Probable ATP-dependent 100.0 1.1E-32 3.6E-37 253.9 15.7 199 91-293 16-243 (245)
66 3ber_A Probable ATP-dependent 100.0 3.5E-33 1.2E-37 257.0 12.2 188 98-290 41-247 (249)
67 3mwy_W Chromo domain-containin 100.0 1.4E-31 4.7E-36 285.6 24.0 320 123-457 236-699 (800)
68 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-32 7.7E-37 293.5 16.9 315 122-457 270-721 (1038)
69 2pl3_A Probable ATP-dependent 100.0 5.9E-32 2E-36 247.4 14.8 189 97-291 22-233 (236)
70 1t6n_A Probable ATP-dependent 100.0 1.2E-31 4.1E-36 242.7 13.7 187 99-289 13-219 (220)
71 3ly5_A ATP-dependent RNA helic 100.0 4.7E-32 1.6E-36 251.5 11.1 184 98-286 50-258 (262)
72 2gxq_A Heat resistant RNA depe 100.0 2E-31 6.8E-36 238.9 14.6 183 101-290 2-205 (207)
73 1z3i_X Similar to RAD54-like; 100.0 6.3E-30 2.1E-34 266.3 28.0 319 123-453 55-539 (644)
74 2ipc_A Preprotein translocase 100.0 3.2E-30 1.1E-34 263.3 22.1 135 114-260 71-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 4E-29 1.4E-33 259.8 20.5 129 312-444 423-551 (664)
76 2rb4_A ATP-dependent RNA helic 100.0 9E-29 3.1E-33 215.0 18.3 165 295-464 3-167 (175)
77 1t5i_A C_terminal domain of A 100.0 1.7E-28 5.7E-33 212.3 16.3 161 297-468 3-163 (172)
78 1fuk_A Eukaryotic initiation f 100.0 6.3E-28 2.1E-32 207.5 19.5 159 298-467 2-160 (165)
79 2p6n_A ATP-dependent RNA helic 100.0 1.1E-28 3.7E-33 216.8 15.0 175 279-465 9-183 (191)
80 2hjv_A ATP-dependent RNA helic 100.0 1.5E-27 5E-32 204.7 19.7 158 295-464 5-162 (163)
81 2d7d_A Uvrabc system protein B 100.0 5.7E-28 1.9E-32 251.1 19.0 129 312-444 429-557 (661)
82 3eaq_A Heat resistant RNA depe 99.9 1.4E-26 4.7E-31 207.2 18.7 157 302-470 8-165 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.9E-27 1.3E-31 205.9 13.6 162 294-466 14-175 (185)
84 3i32_A Heat resistant RNA depe 99.9 4.2E-26 1.4E-30 213.5 20.0 159 300-470 3-162 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 3.4E-27 1.2E-31 203.9 0.0 155 299-464 3-157 (170)
86 2vl7_A XPD; helicase, unknown 99.9 3.9E-22 1.3E-26 203.3 18.3 108 327-440 383-518 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 6.2E-21 2.1E-25 195.2 18.4 131 123-261 3-187 (551)
88 3b6e_A Interferon-induced heli 99.9 5.5E-22 1.9E-26 178.5 7.5 138 119-261 29-176 (216)
89 3llm_A ATP-dependent RNA helic 99.8 4.7E-21 1.6E-25 174.5 11.8 148 122-284 60-229 (235)
90 1rif_A DAR protein, DNA helica 99.8 4E-21 1.4E-25 180.1 9.7 140 123-274 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.4E-19 8.1E-24 184.8 18.3 141 327-477 447-612 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 7.9E-19 2.7E-23 162.3 14.5 128 309-444 93-225 (271)
93 2fz4_A DNA repair protein RAD2 99.8 1.5E-18 5.1E-23 157.7 10.4 124 123-272 93-230 (237)
94 1w36_D RECD, exodeoxyribonucle 98.7 2.4E-08 8.2E-13 102.8 9.0 73 125-200 151-225 (608)
95 4b3f_X DNA-binding protein smu 98.3 1.1E-05 3.9E-10 83.8 14.9 68 123-194 189-256 (646)
96 3lfu_A DNA helicase II; SF1 he 98.2 1.7E-05 6E-10 82.6 15.3 69 123-195 9-78 (647)
97 3hgt_A HDA1 complex subunit 3; 98.0 7.5E-05 2.6E-09 69.0 13.1 127 310-448 107-242 (328)
98 2gk6_A Regulator of nonsense t 98.0 1.7E-05 5.9E-10 82.0 9.6 70 121-194 178-247 (624)
99 3upu_A ATP-dependent DNA helic 97.9 8.4E-06 2.9E-10 81.1 5.2 71 119-191 21-94 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.8 1.8E-05 6E-10 80.7 6.4 63 123-190 189-251 (574)
101 2xzl_A ATP-dependent helicase 97.8 2.3E-05 8E-10 82.8 7.3 69 122-194 359-427 (802)
102 3vkw_A Replicase large subunit 97.0 0.00091 3.1E-08 64.9 6.4 85 141-259 162-246 (446)
103 2wjy_A Regulator of nonsense t 96.8 0.0015 5E-08 69.1 6.7 68 123-194 356-423 (800)
104 2o0j_A Terminase, DNA packagin 96.6 0.0033 1.1E-07 60.2 7.2 72 123-197 163-234 (385)
105 2b8t_A Thymidine kinase; deoxy 96.6 0.0061 2.1E-07 53.6 8.2 88 141-258 13-100 (223)
106 2orw_A Thymidine kinase; TMTK, 96.4 0.0033 1.1E-07 53.8 5.2 38 141-181 4-41 (184)
107 1xx6_A Thymidine kinase; NESG, 96.4 0.0037 1.2E-07 53.7 5.3 38 141-181 9-46 (191)
108 3cpe_A Terminase, DNA packagin 96.3 0.0066 2.3E-07 62.2 7.9 73 123-198 163-235 (592)
109 1uaa_A REP helicase, protein ( 96.3 0.0034 1.2E-07 65.5 5.5 70 123-196 2-72 (673)
110 3u4q_A ATP-dependent helicase/ 96.2 0.0056 1.9E-07 68.2 6.6 69 123-195 10-81 (1232)
111 1pjr_A PCRA; DNA repair, DNA r 96.2 0.0056 1.9E-07 64.4 6.2 69 123-195 11-80 (724)
112 1gm5_A RECG; helicase, replica 96.1 0.025 8.6E-07 59.5 11.0 104 303-406 392-500 (780)
113 2j9r_A Thymidine kinase; TK1, 96.0 0.0056 1.9E-07 53.1 4.3 39 141-182 29-67 (214)
114 3vfd_A Spastin; ATPase, microt 95.5 0.03 1E-06 54.0 8.1 55 97-156 109-164 (389)
115 3e2i_A Thymidine kinase; Zn-bi 95.2 0.018 6.2E-07 49.9 4.7 39 141-182 29-67 (219)
116 3oiy_A Reverse gyrase helicase 95.2 0.082 2.8E-06 51.3 10.1 99 304-402 40-145 (414)
117 1w4r_A Thymidine kinase; type 95.2 0.012 4.3E-07 50.1 3.5 38 140-180 20-57 (195)
118 2orv_A Thymidine kinase; TP4A 95.1 0.017 5.7E-07 50.7 4.2 39 141-182 20-58 (234)
119 2zpa_A Uncharacterized protein 95.0 0.027 9.2E-07 57.5 5.9 105 123-271 175-289 (671)
120 2kjq_A DNAA-related protein; s 94.5 0.019 6.4E-07 47.1 2.9 18 137-156 35-52 (149)
121 3te6_A Regulatory protein SIR3 94.4 0.049 1.7E-06 50.6 5.6 30 135-165 40-69 (318)
122 2eyq_A TRCF, transcription-rep 94.1 0.22 7.5E-06 55.0 11.0 101 302-402 626-731 (1151)
123 2chg_A Replication factor C sm 93.8 0.27 9.2E-06 42.5 9.2 16 141-156 39-54 (226)
124 3bos_A Putative DNA replicatio 93.8 0.057 2E-06 47.7 4.7 16 141-156 53-68 (242)
125 1a5t_A Delta prime, HOLB; zinc 93.7 0.082 2.8E-06 49.7 6.0 35 125-159 4-43 (334)
126 4ddu_A Reverse gyrase; topoiso 93.7 0.21 7.2E-06 54.8 9.9 101 303-403 96-203 (1104)
127 2v1u_A Cell division control p 93.7 0.08 2.8E-06 50.6 5.9 17 140-156 44-60 (387)
128 1l8q_A Chromosomal replication 93.5 0.12 4E-06 48.4 6.5 16 141-156 38-53 (324)
129 3u61_B DNA polymerase accessor 93.1 0.34 1.2E-05 45.1 9.1 42 99-156 22-64 (324)
130 1fnn_A CDC6P, cell division co 92.7 0.23 7.7E-06 47.5 7.5 16 142-157 46-61 (389)
131 3pfi_A Holliday junction ATP-d 92.3 0.091 3.1E-06 49.4 3.9 47 99-156 25-71 (338)
132 2z4s_A Chromosomal replication 92.1 0.17 5.9E-06 49.5 5.8 38 141-179 131-168 (440)
133 1d2n_A N-ethylmaleimide-sensit 92.0 0.41 1.4E-05 43.3 7.9 17 141-157 65-81 (272)
134 1t6n_A Probable ATP-dependent 92.0 2.2 7.4E-05 36.8 12.4 97 303-402 54-164 (220)
135 2qby_B CDC6 homolog 3, cell di 91.8 0.1 3.5E-06 49.9 3.8 17 141-157 46-62 (384)
136 3fe2_A Probable ATP-dependent 91.6 5 0.00017 35.2 14.5 72 327-402 101-182 (242)
137 2gxq_A Heat resistant RNA depe 91.6 4.3 0.00015 34.4 13.8 96 303-402 41-150 (207)
138 3bor_A Human initiation factor 91.5 2.4 8.4E-05 37.1 12.3 97 303-402 70-179 (237)
139 1vec_A ATP-dependent RNA helic 91.4 2 6.7E-05 36.6 11.4 147 303-460 43-203 (206)
140 3dm5_A SRP54, signal recogniti 91.1 0.85 2.9E-05 44.3 9.3 56 141-202 101-158 (443)
141 3kl4_A SRP54, signal recogniti 91.0 0.43 1.5E-05 46.3 7.1 54 141-200 98-153 (433)
142 3hjh_A Transcription-repair-co 90.9 0.94 3.2E-05 44.6 9.6 51 141-197 15-65 (483)
143 3ber_A Probable ATP-dependent 90.9 5.3 0.00018 35.3 13.9 96 303-402 83-192 (249)
144 1iqp_A RFCS; clamp loader, ext 90.6 0.42 1.4E-05 44.3 6.6 42 99-156 21-62 (327)
145 1oyw_A RECQ helicase, ATP-depe 90.5 1.6 5.6E-05 43.6 11.2 82 302-386 42-123 (523)
146 2qby_A CDC6 homolog 1, cell di 90.0 0.26 8.9E-06 46.9 4.7 16 141-156 46-61 (386)
147 4b4t_M 26S protease regulatory 89.9 0.24 8.4E-06 48.0 4.3 55 97-156 175-231 (434)
148 2z43_A DNA repair and recombin 89.3 0.95 3.3E-05 42.1 7.9 54 140-193 107-164 (324)
149 1sxj_B Activator 1 37 kDa subu 88.9 0.53 1.8E-05 43.5 5.8 16 141-156 43-58 (323)
150 3pvs_A Replication-associated 88.8 0.54 1.8E-05 46.0 5.9 16 141-156 51-66 (447)
151 3n70_A Transport activator; si 88.7 0.54 1.8E-05 37.9 5.0 17 141-157 25-41 (145)
152 2pl3_A Probable ATP-dependent 88.2 3.4 0.00012 36.1 10.4 95 303-402 65-177 (236)
153 2gno_A DNA polymerase III, gam 88.2 0.98 3.4E-05 41.6 7.0 17 141-157 19-35 (305)
154 3iuy_A Probable ATP-dependent 88.1 3.3 0.00011 35.9 10.2 95 304-402 61-173 (228)
155 2oxc_A Probable ATP-dependent 88.1 3.6 0.00012 35.8 10.4 95 303-402 64-172 (230)
156 3jvv_A Twitching mobility prot 87.9 0.39 1.3E-05 45.4 4.1 16 141-156 124-139 (356)
157 3ec2_A DNA replication protein 87.6 0.29 9.8E-06 41.1 2.7 16 141-156 39-54 (180)
158 3io5_A Recombination and repai 87.4 0.43 1.5E-05 44.0 3.9 42 142-184 30-71 (333)
159 1xti_A Probable ATP-dependent 87.3 5.9 0.0002 37.4 12.3 97 303-402 48-158 (391)
160 1qde_A EIF4A, translation init 87.3 1.8 6.2E-05 37.4 8.0 95 303-402 54-161 (224)
161 2v1x_A ATP-dependent DNA helic 87.1 1.3 4.4E-05 45.1 7.7 81 303-386 62-144 (591)
162 1jr3_A DNA polymerase III subu 87.0 4 0.00014 38.4 10.9 17 141-157 39-55 (373)
163 1gku_B Reverse gyrase, TOP-RG; 86.6 1.3 4.5E-05 48.4 7.9 94 307-402 78-181 (1054)
164 4b4t_J 26S protease regulatory 86.4 0.49 1.7E-05 45.2 3.9 54 98-156 143-198 (405)
165 3k1j_A LON protease, ATP-depen 86.3 1.9 6.5E-05 44.0 8.5 20 135-156 57-76 (604)
166 1p9r_A General secretion pathw 86.1 0.45 1.5E-05 46.0 3.5 16 141-156 168-183 (418)
167 3cmu_A Protein RECA, recombina 85.7 0.55 1.9E-05 54.1 4.5 40 140-182 1427-1466(2050)
168 1e9r_A Conjugal transfer prote 85.6 0.54 1.9E-05 45.8 3.9 42 141-185 54-95 (437)
169 3co5_A Putative two-component 85.1 0.36 1.2E-05 38.8 1.9 16 141-156 28-43 (143)
170 1wrb_A DJVLGB; RNA helicase, D 84.7 7.3 0.00025 34.3 10.8 71 328-402 100-180 (253)
171 4b4t_L 26S protease subunit RP 84.5 0.52 1.8E-05 45.7 3.1 55 97-156 175-231 (437)
172 1xwi_A SKD1 protein; VPS4B, AA 84.3 1.5 5.1E-05 40.7 6.1 52 98-156 7-61 (322)
173 3eie_A Vacuolar protein sortin 84.2 0.52 1.8E-05 43.9 2.9 52 98-156 13-67 (322)
174 3ly5_A ATP-dependent RNA helic 83.9 7.3 0.00025 34.6 10.4 72 327-402 125-207 (262)
175 4b4t_H 26S protease regulatory 83.8 0.51 1.7E-05 45.9 2.6 54 98-156 204-259 (467)
176 1lv7_A FTSH; alpha/beta domain 83.8 1.3 4.3E-05 39.6 5.2 54 98-156 7-61 (257)
177 2qz4_A Paraplegin; AAA+, SPG7, 83.3 1.5 5.2E-05 39.0 5.6 52 100-156 3-55 (262)
178 2oap_1 GSPE-2, type II secreti 83.1 0.71 2.4E-05 45.9 3.5 16 141-156 261-276 (511)
179 4b4t_I 26S protease regulatory 82.7 0.96 3.3E-05 43.5 4.0 55 97-156 176-232 (437)
180 2x8a_A Nuclear valosin-contain 82.6 0.38 1.3E-05 43.7 1.2 54 98-156 5-60 (274)
181 4b4t_K 26S protease regulatory 82.5 0.56 1.9E-05 45.4 2.4 55 97-156 166-222 (428)
182 2dr3_A UPF0273 protein PH0284; 82.2 0.92 3.2E-05 40.0 3.6 49 141-193 24-72 (247)
183 1hv8_A Putative ATP-dependent 81.8 14 0.00048 34.2 12.1 96 302-402 46-153 (367)
184 1w5s_A Origin recognition comp 81.7 1.1 3.9E-05 42.9 4.3 16 141-156 51-68 (412)
185 2gza_A Type IV secretion syste 81.4 0.87 3E-05 43.1 3.3 18 137-156 174-191 (361)
186 3b9p_A CG5977-PA, isoform A; A 81.4 0.94 3.2E-05 41.4 3.5 54 98-156 16-70 (297)
187 1s2m_A Putative ATP-dependent 81.2 12 0.00042 35.3 11.6 96 303-402 61-169 (400)
188 3cf0_A Transitional endoplasmi 81.1 0.62 2.1E-05 42.9 2.1 54 98-156 10-65 (301)
189 1jbk_A CLPB protein; beta barr 81.1 0.74 2.5E-05 38.5 2.5 16 141-156 44-59 (195)
190 3u4q_B ATP-dependent helicase/ 81.0 1.2 4.1E-05 49.4 4.7 39 143-181 4-42 (1166)
191 3h4m_A Proteasome-activating n 80.9 0.78 2.7E-05 41.6 2.7 54 98-156 12-67 (285)
192 2j0s_A ATP-dependent RNA helic 80.6 15 0.00052 34.8 12.0 96 303-402 77-185 (410)
193 2p65_A Hypothetical protein PF 80.4 0.56 1.9E-05 39.1 1.4 16 141-156 44-59 (187)
194 2ius_A DNA translocase FTSK; n 80.1 1.6 5.4E-05 43.3 4.7 21 141-161 168-188 (512)
195 1wp9_A ATP-dependent RNA helic 80.0 8.4 0.00029 37.3 10.1 95 303-402 26-131 (494)
196 1fuu_A Yeast initiation factor 79.7 15 0.00051 34.5 11.6 95 303-402 61-168 (394)
197 2pt7_A CAG-ALFA; ATPase, prote 79.6 1.2 4.2E-05 41.4 3.6 24 141-166 172-195 (330)
198 3fmo_B ATP-dependent RNA helic 79.6 4.7 0.00016 36.9 7.6 142 304-458 135-291 (300)
199 4ag6_A VIRB4 ATPase, type IV s 79.2 1.2 4.3E-05 42.5 3.6 40 141-183 36-75 (392)
200 2w58_A DNAI, primosome compone 79.1 0.93 3.2E-05 38.7 2.4 16 141-156 55-70 (202)
201 3hix_A ALR3790 protein; rhodan 79.0 3.3 0.00011 31.0 5.3 41 325-365 49-90 (106)
202 1kgd_A CASK, peripheral plasma 78.5 1.1 3.7E-05 37.6 2.6 16 141-156 6-21 (180)
203 3b85_A Phosphate starvation-in 78.5 1.3 4.3E-05 38.3 3.1 30 125-156 9-38 (208)
204 2qgz_A Helicase loader, putati 78.2 1.3 4.6E-05 40.8 3.4 17 141-157 153-169 (308)
205 3iij_A Coilin-interacting nucl 78.2 0.98 3.4E-05 37.7 2.3 17 141-157 12-28 (180)
206 3gk5_A Uncharacterized rhodane 78.1 2.2 7.6E-05 32.2 4.1 40 326-365 53-92 (108)
207 2ewv_A Twitching motility prot 77.9 0.74 2.5E-05 43.8 1.5 16 141-156 137-152 (372)
208 3dkp_A Probable ATP-dependent 77.9 3.9 0.00013 35.9 6.3 97 303-402 69-181 (245)
209 3cf2_A TER ATPase, transitiona 77.6 2.4 8.2E-05 44.5 5.3 57 97-156 471-527 (806)
210 2eyu_A Twitching motility prot 77.5 1.1 3.8E-05 40.2 2.5 16 141-156 26-41 (261)
211 2zts_A Putative uncharacterize 77.4 1.2 4.1E-05 39.3 2.7 51 140-193 30-80 (251)
212 2qp9_X Vacuolar protein sortin 77.1 0.87 3E-05 43.0 1.8 52 99-157 47-101 (355)
213 2db3_A ATP-dependent RNA helic 77.0 8.9 0.0003 37.1 9.1 96 303-402 96-209 (434)
214 3tif_A Uncharacterized ABC tra 76.8 1.6 5.4E-05 38.5 3.3 25 141-167 32-56 (235)
215 1q0u_A Bstdead; DEAD protein, 76.5 6.3 0.00022 33.8 7.2 96 303-402 44-156 (219)
216 1w36_B RECB, exodeoxyribonucle 76.5 3.4 0.00012 45.8 6.5 53 142-194 18-79 (1180)
217 2iut_A DNA translocase FTSK; n 76.5 2.3 7.7E-05 42.6 4.6 26 141-166 215-240 (574)
218 2i1q_A DNA repair and recombin 76.4 2.5 8.7E-05 39.1 4.8 54 141-194 99-166 (322)
219 3dmn_A Putative DNA helicase; 76.4 30 0.001 28.3 11.8 88 304-406 37-124 (174)
220 4a2q_A RIG-I, retinoic acid in 76.3 6.9 0.00024 41.3 8.6 97 303-403 266-378 (797)
221 1ixz_A ATP-dependent metallopr 76.2 1.4 4.7E-05 39.2 2.8 54 98-156 11-65 (254)
222 2qmh_A HPR kinase/phosphorylas 75.6 1.5 5.1E-05 37.4 2.6 16 141-156 35-50 (205)
223 3tbk_A RIG-I helicase domain; 75.6 4.6 0.00016 40.2 6.8 96 304-403 23-134 (555)
224 4a2p_A RIG-I, retinoic acid in 75.5 6.1 0.00021 39.4 7.7 96 304-403 26-137 (556)
225 3g5j_A Putative ATP/GTP bindin 75.3 4 0.00014 31.8 5.1 40 327-366 87-128 (134)
226 2cvh_A DNA repair and recombin 74.8 1.8 6.3E-05 37.2 3.2 32 141-178 21-52 (220)
227 1nij_A Hypothetical protein YJ 74.8 1.4 4.9E-05 40.7 2.6 35 141-180 5-39 (318)
228 2qor_A Guanylate kinase; phosp 74.8 1.3 4.5E-05 37.9 2.2 20 135-156 9-28 (204)
229 3exa_A TRNA delta(2)-isopenten 74.6 1.4 4.8E-05 40.5 2.4 17 141-157 4-20 (322)
230 3nwn_A Kinesin-like protein KI 74.5 0.99 3.4E-05 42.5 1.4 26 131-156 96-121 (359)
231 2px0_A Flagellar biosynthesis 74.5 1.2 4.2E-05 40.7 2.0 17 141-157 106-122 (296)
232 3d8b_A Fidgetin-like protein 1 74.5 3.3 0.00011 38.9 5.1 54 99-157 80-134 (357)
233 4g1u_C Hemin import ATP-bindin 74.4 2.7 9.1E-05 37.8 4.2 26 141-168 38-63 (266)
234 1qhx_A CPT, protein (chloramph 74.4 1.3 4.5E-05 36.7 2.0 16 141-156 4-19 (178)
235 3hws_A ATP-dependent CLP prote 74.2 2.5 8.6E-05 39.9 4.2 17 141-157 52-68 (363)
236 3t15_A Ribulose bisphosphate c 74.2 2.5 8.5E-05 38.6 4.0 16 141-156 37-52 (293)
237 3a8t_A Adenylate isopentenyltr 74.1 1.4 4.7E-05 41.0 2.2 17 141-157 41-57 (339)
238 1f9v_A Kinesin-like protein KA 74.0 1.4 4.8E-05 41.3 2.3 27 131-157 76-102 (347)
239 2bjv_A PSP operon transcriptio 73.9 3.6 0.00012 36.6 5.0 16 141-156 30-45 (265)
240 1bg2_A Kinesin; motor protein, 73.8 1.1 3.9E-05 41.5 1.6 26 131-156 69-94 (325)
241 2zan_A Vacuolar protein sortin 73.6 1.5 5.3E-05 42.7 2.6 53 97-156 128-183 (444)
242 2r62_A Cell division protease 73.6 1.1 3.9E-05 40.1 1.5 16 141-156 45-60 (268)
243 3b6e_A Interferon-induced heli 73.5 6 0.00021 33.6 6.2 97 303-403 51-169 (216)
244 1lvg_A Guanylate kinase, GMP k 73.5 1.3 4.5E-05 37.7 1.8 16 141-156 5-20 (198)
245 3tau_A Guanylate kinase, GMP k 73.4 1.7 5.8E-05 37.3 2.5 16 141-156 9-24 (208)
246 3trf_A Shikimate kinase, SK; a 73.4 1.3 4.5E-05 37.0 1.8 18 141-158 6-23 (185)
247 3foj_A Uncharacterized protein 73.3 3.1 0.00011 30.7 3.7 38 327-364 55-92 (100)
248 1zp6_A Hypothetical protein AT 73.3 1.2 4.2E-05 37.4 1.6 16 141-156 10-25 (191)
249 3vaa_A Shikimate kinase, SK; s 73.3 1.4 4.8E-05 37.5 2.0 17 141-157 26-42 (199)
250 2j41_A Guanylate kinase; GMP, 73.2 1.4 4.9E-05 37.5 2.0 16 141-156 7-22 (207)
251 2rb4_A ATP-dependent RNA helic 73.2 3.1 0.00011 34.4 4.1 74 170-253 33-108 (175)
252 3gfo_A Cobalt import ATP-bindi 73.1 2.2 7.4E-05 38.6 3.2 25 141-167 35-59 (275)
253 3t0q_A AGR253WP; kinesin, alph 72.9 1.5 5.1E-05 41.2 2.2 27 131-157 77-103 (349)
254 2fsf_A Preprotein translocase 72.9 12 0.00042 39.2 9.0 92 304-402 91-200 (853)
255 3foz_A TRNA delta(2)-isopenten 72.8 1.6 5.4E-05 40.1 2.2 17 141-157 11-27 (316)
256 3lw7_A Adenylate kinase relate 72.8 1.3 4.5E-05 36.4 1.7 17 141-157 2-18 (179)
257 3eme_A Rhodanese-like domain p 72.7 3.1 0.00011 30.9 3.6 38 327-364 55-92 (103)
258 3bh0_A DNAB-like replicative h 72.7 5.6 0.00019 36.7 6.0 49 141-193 69-117 (315)
259 3nbx_X ATPase RAVA; AAA+ ATPas 72.6 2.3 7.7E-05 42.1 3.5 29 126-156 29-57 (500)
260 1goj_A Kinesin, kinesin heavy 72.6 1.3 4.6E-05 41.5 1.8 26 131-156 72-97 (355)
261 3eiq_A Eukaryotic initiation f 72.6 21 0.0007 33.8 10.4 96 304-402 81-189 (414)
262 2i4i_A ATP-dependent RNA helic 72.5 26 0.00089 33.2 11.1 70 329-402 102-181 (417)
263 3l9o_A ATP-dependent RNA helic 72.5 4.8 0.00017 44.1 6.4 88 304-402 203-296 (1108)
264 3syl_A Protein CBBX; photosynt 72.4 1.7 5.7E-05 39.9 2.4 17 141-157 68-84 (309)
265 1ls1_A Signal recognition part 72.3 4.2 0.00014 37.1 5.0 16 141-156 99-114 (295)
266 3uk6_A RUVB-like 2; hexameric 72.3 2.8 9.7E-05 39.4 4.1 17 141-157 71-87 (368)
267 3bfn_A Kinesin-like protein KI 72.3 1.4 4.8E-05 41.9 1.8 26 131-156 90-115 (388)
268 2l82_A Designed protein OR32; 72.3 22 0.00075 26.2 7.7 50 331-380 5-54 (162)
269 2ff7_A Alpha-hemolysin translo 72.1 2.4 8.1E-05 37.6 3.2 25 141-167 36-60 (247)
270 3a00_A Guanylate kinase, GMP k 72.1 1.6 5.5E-05 36.7 2.0 16 141-156 2-17 (186)
271 2vvg_A Kinesin-2; motor protei 71.9 1.3 4.6E-05 41.4 1.6 26 131-156 81-106 (350)
272 2y65_A Kinesin, kinesin heavy 71.9 1.3 4.6E-05 41.7 1.6 26 131-156 76-101 (365)
273 1mv5_A LMRA, multidrug resista 71.9 2.8 9.7E-05 37.0 3.7 25 141-167 29-53 (243)
274 3tr0_A Guanylate kinase, GMP k 71.8 2 6.8E-05 36.5 2.6 16 141-156 8-23 (205)
275 3ney_A 55 kDa erythrocyte memb 71.7 2.1 7.2E-05 36.5 2.6 16 141-156 20-35 (197)
276 4gp7_A Metallophosphoesterase; 71.6 1.5 5.3E-05 36.3 1.8 17 141-157 10-26 (171)
277 3lre_A Kinesin-like protein KI 71.6 1.5 5E-05 41.3 1.8 26 131-156 97-122 (355)
278 1sgw_A Putative ABC transporte 71.5 2.7 9.2E-05 36.3 3.3 24 141-166 36-59 (214)
279 2ze6_A Isopentenyl transferase 71.4 1.8 6.1E-05 38.6 2.2 16 142-157 3-18 (253)
280 3iwh_A Rhodanese-like domain p 71.4 3.5 0.00012 30.8 3.6 37 327-363 55-91 (103)
281 1v5w_A DMC1, meiotic recombina 71.4 3.8 0.00013 38.3 4.6 42 140-181 122-166 (343)
282 1v8k_A Kinesin-like protein KI 71.3 1.3 4.3E-05 42.5 1.3 26 131-156 146-171 (410)
283 1t5c_A CENP-E protein, centrom 71.3 1.3 4.5E-05 41.5 1.4 26 131-156 69-94 (349)
284 2h58_A Kinesin-like protein KI 71.3 1.4 4.9E-05 40.9 1.6 26 131-156 72-97 (330)
285 1wv9_A Rhodanese homolog TT165 71.2 4.3 0.00015 29.5 4.0 36 329-364 54-89 (94)
286 1n0w_A DNA repair protein RAD5 71.2 3.6 0.00012 35.9 4.3 39 141-179 25-66 (243)
287 3b6u_A Kinesin-like protein KI 71.1 1.3 4.5E-05 41.8 1.4 26 131-156 93-118 (372)
288 4etp_A Kinesin-like protein KA 71.0 1.4 4.9E-05 42.2 1.6 27 131-157 132-158 (403)
289 2zfi_A Kinesin-like protein KI 70.9 1.5 5E-05 41.5 1.6 26 131-156 81-106 (366)
290 2r2a_A Uncharacterized protein 70.9 2.3 8E-05 36.2 2.8 22 142-163 7-28 (199)
291 1ojl_A Transcriptional regulat 70.8 3.2 0.00011 38.1 3.9 16 141-156 26-41 (304)
292 1tf5_A Preprotein translocase 70.7 17 0.00057 38.2 9.5 92 304-402 100-209 (844)
293 2pcj_A ABC transporter, lipopr 70.6 2.5 8.5E-05 36.8 3.0 25 141-167 31-55 (224)
294 2v9p_A Replication protein E1; 70.5 1.6 5.6E-05 40.0 1.8 16 141-156 127-142 (305)
295 1iy2_A ATP-dependent metallopr 70.5 2.2 7.4E-05 38.6 2.6 54 98-156 35-89 (278)
296 2pze_A Cystic fibrosis transme 70.4 2.7 9.4E-05 36.7 3.2 24 141-166 35-58 (229)
297 1b0u_A Histidine permease; ABC 70.4 2.7 9.4E-05 37.6 3.3 25 141-167 33-57 (262)
298 1kht_A Adenylate kinase; phosp 70.4 1.7 5.9E-05 36.4 1.8 16 141-156 4-19 (192)
299 1u0j_A DNA replication protein 70.3 4.6 0.00016 36.1 4.6 45 110-158 74-122 (267)
300 1ex7_A Guanylate kinase; subst 70.2 1.8 6.3E-05 36.5 1.9 16 141-156 2-17 (186)
301 3dc4_A Kinesin-like protein NO 70.2 1.3 4.5E-05 41.4 1.1 26 131-156 86-111 (344)
302 1kag_A SKI, shikimate kinase I 70.2 1.8 6.2E-05 35.6 1.9 16 141-156 5-20 (173)
303 2nr8_A Kinesin-like protein KI 70.1 1.4 4.9E-05 41.4 1.4 26 131-156 95-120 (358)
304 3nh6_A ATP-binding cassette SU 70.1 2 7E-05 39.4 2.4 25 141-167 81-105 (306)
305 1ji0_A ABC transporter; ATP bi 70.0 2.8 9.7E-05 36.9 3.2 25 141-167 33-57 (240)
306 3gbj_A KIF13B protein; kinesin 69.9 1.5 5E-05 41.3 1.4 26 131-156 84-109 (354)
307 2hjv_A ATP-dependent RNA helic 69.9 1.7 5.8E-05 35.6 1.6 73 171-253 35-109 (163)
308 1x88_A Kinesin-like protein KI 69.9 1.3 4.6E-05 41.7 1.1 26 131-156 80-105 (359)
309 2w0m_A SSO2452; RECA, SSPF, un 69.8 2.5 8.6E-05 36.6 2.9 16 141-156 24-39 (235)
310 1g6h_A High-affinity branched- 69.8 2.8 9.7E-05 37.4 3.2 25 141-167 34-58 (257)
311 2rep_A Kinesin-like protein KI 69.7 1.7 6E-05 41.1 1.8 26 131-156 107-132 (376)
312 2ixe_A Antigen peptide transpo 69.6 2.9 0.0001 37.6 3.3 25 141-167 46-70 (271)
313 2olj_A Amino acid ABC transpor 69.6 2.9 0.0001 37.4 3.3 25 141-167 51-75 (263)
314 2q5c_A NTRC family transcripti 69.5 27 0.00091 29.5 9.2 129 328-476 4-137 (196)
315 4a14_A Kinesin, kinesin-like p 69.4 1.7 5.7E-05 40.8 1.6 26 131-156 75-100 (344)
316 3u06_A Protein claret segregat 69.3 1.5 5.2E-05 42.1 1.4 26 131-156 130-155 (412)
317 1vpl_A ABC transporter, ATP-bi 69.2 3 0.0001 37.2 3.3 25 141-167 42-66 (256)
318 1y63_A LMAJ004144AAA protein; 69.0 2.1 7.2E-05 35.9 2.1 17 141-157 11-27 (184)
319 3cob_A Kinesin heavy chain-lik 68.9 1.3 4.5E-05 41.8 0.8 26 131-156 71-96 (369)
320 1ly1_A Polynucleotide kinase; 68.8 1.8 6.3E-05 35.8 1.7 17 141-157 3-19 (181)
321 1ofh_A ATP-dependent HSL prote 68.8 1.9 6.6E-05 39.4 1.9 16 141-156 51-66 (310)
322 1cr0_A DNA primase/helicase; R 68.7 2.2 7.4E-05 38.9 2.3 36 141-178 36-71 (296)
323 1z6g_A Guanylate kinase; struc 68.7 2.1 7.3E-05 37.0 2.1 16 141-156 24-39 (218)
324 3kb2_A SPBC2 prophage-derived 68.5 1.9 6.6E-05 35.3 1.7 16 142-157 3-18 (173)
325 2heh_A KIF2C protein; kinesin, 68.2 1.7 5.7E-05 41.3 1.4 27 131-157 126-152 (387)
326 2wbe_C Bipolar kinesin KRP-130 68.2 1.5 5.1E-05 41.6 1.0 26 131-156 92-117 (373)
327 2qt1_A Nicotinamide riboside k 68.1 2.5 8.4E-05 36.1 2.4 23 132-156 15-37 (207)
328 2yz2_A Putative ABC transporte 67.9 3.3 0.00011 37.1 3.3 25 141-167 34-58 (266)
329 1znw_A Guanylate kinase, GMP k 67.8 2.2 7.5E-05 36.6 2.0 21 134-156 16-36 (207)
330 1rj9_A FTSY, signal recognitio 67.8 2.8 9.6E-05 38.5 2.8 35 141-178 103-137 (304)
331 2yjt_D ATP-dependent RNA helic 71.0 1.1 3.7E-05 37.1 0.0 74 170-253 29-104 (170)
332 2owm_A Nckin3-434, related to 67.7 1.9 6.3E-05 41.9 1.6 26 131-156 128-153 (443)
333 3crm_A TRNA delta(2)-isopenten 67.7 2.4 8.1E-05 39.2 2.2 17 141-157 6-22 (323)
334 3cm0_A Adenylate kinase; ATP-b 67.6 1.7 5.9E-05 36.3 1.3 17 141-157 5-21 (186)
335 3e70_C DPA, signal recognition 67.6 3.5 0.00012 38.3 3.5 16 141-156 130-145 (328)
336 2c9o_A RUVB-like 1; hexameric 67.6 4.3 0.00015 39.7 4.3 49 98-157 32-80 (456)
337 1nlf_A Regulatory protein REPA 67.3 7 0.00024 35.1 5.4 25 133-159 25-49 (279)
338 4a1f_A DNAB helicase, replicat 67.1 6.3 0.00022 36.7 5.1 47 141-191 47-93 (338)
339 4eun_A Thermoresistant glucoki 67.0 2.3 7.9E-05 36.1 2.0 16 141-156 30-45 (200)
340 1yks_A Genome polyprotein [con 67.0 9.1 0.00031 37.1 6.4 69 171-252 177-245 (440)
341 2ihy_A ABC transporter, ATP-bi 66.8 3.5 0.00012 37.3 3.2 24 141-166 48-71 (279)
342 4a2w_A RIG-I, retinoic acid in 66.8 11 0.00036 40.7 7.5 96 303-402 266-377 (936)
343 3bgw_A DNAB-like replicative h 66.7 6.3 0.00022 38.3 5.2 36 141-179 198-233 (444)
344 1knq_A Gluconate kinase; ALFA/ 66.7 2.2 7.6E-05 35.2 1.7 17 141-157 9-25 (175)
345 1sxj_E Activator 1 40 kDa subu 66.6 6.1 0.00021 36.8 5.0 43 99-156 10-52 (354)
346 1tue_A Replication protein E1; 66.5 2.4 8.1E-05 36.4 1.8 44 110-156 29-74 (212)
347 1gmx_A GLPE protein; transfera 66.5 10 0.00034 28.3 5.3 40 326-365 56-96 (108)
348 1tq1_A AT5G66040, senescence-a 66.4 5.7 0.00019 30.9 4.0 40 326-365 80-120 (129)
349 1s96_A Guanylate kinase, GMP k 66.4 2.4 8.2E-05 36.8 2.0 16 141-156 17-32 (219)
350 2z0m_A 337AA long hypothetical 66.4 26 0.00088 31.9 9.4 92 303-402 34-135 (337)
351 3d3q_A TRNA delta(2)-isopenten 66.2 2.6 9E-05 39.2 2.3 17 141-157 8-24 (340)
352 3cmw_A Protein RECA, recombina 66.0 3 0.0001 47.4 3.1 89 140-260 1431-1522(1706)
353 3ilm_A ALR3790 protein; rhodan 65.7 8.4 0.00029 30.6 5.0 40 325-364 53-93 (141)
354 2ghi_A Transport protein; mult 65.6 4 0.00014 36.5 3.3 25 141-167 47-71 (260)
355 2jgn_A DBX, DDX3, ATP-dependen 65.6 4.4 0.00015 33.9 3.4 90 150-253 29-120 (185)
356 2fsx_A RV0390, COG0607: rhodan 65.3 12 0.00043 29.7 6.0 37 327-363 79-116 (148)
357 3flh_A Uncharacterized protein 65.2 4 0.00014 31.6 2.9 39 327-365 70-110 (124)
358 3c8u_A Fructokinase; YP_612366 65.1 2.8 9.4E-05 35.9 2.1 16 141-156 23-38 (208)
359 2chq_A Replication factor C sm 65.1 8.6 0.00029 35.0 5.7 42 99-156 13-54 (319)
360 2ipc_A Preprotein translocase 65.0 24 0.00083 37.3 9.2 76 304-386 96-176 (997)
361 1tev_A UMP-CMP kinase; ploop, 64.8 2.4 8.4E-05 35.5 1.7 17 141-157 4-20 (196)
362 1um8_A ATP-dependent CLP prote 64.7 2.6 8.7E-05 40.0 1.9 17 141-157 73-89 (376)
363 2qi9_C Vitamin B12 import ATP- 64.6 4.2 0.00014 36.0 3.2 25 141-167 27-51 (249)
364 2r44_A Uncharacterized protein 64.6 2.9 0.0001 38.7 2.3 16 141-156 47-62 (331)
365 3lnc_A Guanylate kinase, GMP k 64.5 3.2 0.00011 36.2 2.4 16 141-156 28-43 (231)
366 3hr8_A Protein RECA; alpha and 64.4 3.7 0.00012 38.6 2.9 40 141-183 62-101 (356)
367 3b9q_A Chloroplast SRP recepto 64.4 2.7 9.2E-05 38.6 1.9 35 141-178 101-135 (302)
368 1nkt_A Preprotein translocase 64.4 23 0.00077 37.4 8.9 92 304-402 128-237 (922)
369 2zr9_A Protein RECA, recombina 64.4 4.1 0.00014 38.2 3.2 37 141-180 62-98 (349)
370 2bdt_A BH3686; alpha-beta prot 64.3 2.3 7.8E-05 35.7 1.3 16 141-156 3-18 (189)
371 2p6r_A Afuhel308 helicase; pro 64.2 13 0.00045 38.5 7.4 94 302-402 42-144 (702)
372 1sxj_D Activator 1 41 kDa subu 64.1 4.2 0.00014 37.9 3.4 16 141-156 59-74 (353)
373 1zuh_A Shikimate kinase; alpha 64.1 2.6 9E-05 34.5 1.7 18 141-158 8-25 (168)
374 3vkg_A Dynein heavy chain, cyt 63.9 8.5 0.00029 46.7 6.3 48 109-160 875-926 (3245)
375 3nhv_A BH2092 protein; alpha-b 63.8 5.9 0.0002 31.6 3.7 38 327-364 71-110 (144)
376 1u94_A RECA protein, recombina 63.8 4.6 0.00016 38.0 3.5 37 141-180 64-100 (356)
377 1hqc_A RUVB; extended AAA-ATPa 63.7 2.6 8.9E-05 38.8 1.8 16 141-156 39-54 (324)
378 1gvn_B Zeta; postsegregational 63.6 2.8 9.7E-05 38.1 1.9 17 141-157 34-50 (287)
379 2cbz_A Multidrug resistance-as 63.6 3.7 0.00013 36.1 2.7 23 141-165 32-54 (237)
380 2onk_A Molybdate/tungstate ABC 63.5 4.1 0.00014 35.9 2.9 25 141-167 25-49 (240)
381 1f2t_A RAD50 ABC-ATPase; DNA d 63.5 2.8 9.4E-05 33.8 1.7 16 141-156 24-39 (149)
382 3t61_A Gluconokinase; PSI-biol 63.5 2.7 9.1E-05 35.7 1.7 17 141-157 19-35 (202)
383 3ipz_A Monothiol glutaredoxin- 63.4 28 0.00097 25.9 7.4 47 327-373 16-68 (109)
384 4fcw_A Chaperone protein CLPB; 63.3 2.6 8.8E-05 38.6 1.7 17 141-157 48-64 (311)
385 1qxn_A SUD, sulfide dehydrogen 63.2 6.1 0.00021 31.2 3.7 39 326-364 80-119 (137)
386 3eph_A TRNA isopentenyltransfe 63.1 3 0.0001 39.8 2.1 17 141-157 3-19 (409)
387 2ehv_A Hypothetical protein PH 63.1 3.6 0.00012 36.1 2.5 18 141-158 31-48 (251)
388 1njg_A DNA polymerase III subu 63.0 7 0.00024 33.7 4.4 16 141-156 46-61 (250)
389 1fuk_A Eukaryotic initiation f 63.0 5 0.00017 32.7 3.2 86 153-253 17-104 (165)
390 2v54_A DTMP kinase, thymidylat 62.9 3.2 0.00011 35.2 2.0 17 141-157 5-21 (204)
391 1ye8_A Protein THEP1, hypothet 62.9 2.9 9.8E-05 34.9 1.7 15 142-156 2-16 (178)
392 1g8p_A Magnesium-chelatase 38 62.7 2.6 9E-05 39.3 1.6 16 141-156 46-61 (350)
393 2fz4_A DNA repair protein RAD2 62.7 24 0.00083 30.6 7.9 85 303-403 111-199 (237)
394 2plr_A DTMP kinase, probable t 62.5 3 0.0001 35.5 1.8 17 141-157 5-21 (213)
395 3uie_A Adenylyl-sulfate kinase 62.5 3 0.0001 35.4 1.8 16 141-156 26-41 (200)
396 2p5t_B PEZT; postsegregational 62.3 4.9 0.00017 35.6 3.2 16 141-156 33-48 (253)
397 1htw_A HI0065; nucleotide-bind 62.2 4.7 0.00016 32.8 2.9 15 141-155 34-48 (158)
398 2dhr_A FTSH; AAA+ protein, hex 62.2 11 0.00038 37.1 6.0 54 98-156 26-80 (499)
399 2nq2_C Hypothetical ABC transp 62.1 3.7 0.00013 36.5 2.4 25 141-167 32-56 (253)
400 2ykg_A Probable ATP-dependent 62.1 14 0.00046 38.2 7.1 96 304-403 32-143 (696)
401 3pxg_A Negative regulator of g 62.0 3.1 0.00011 40.8 2.0 18 140-157 201-218 (468)
402 2rhm_A Putative kinase; P-loop 61.6 3 0.0001 34.9 1.6 17 141-157 6-22 (193)
403 1ukz_A Uridylate kinase; trans 61.5 3.6 0.00012 34.8 2.2 17 141-157 16-32 (203)
404 1via_A Shikimate kinase; struc 61.4 3.3 0.00011 34.2 1.8 16 142-157 6-21 (175)
405 3aez_A Pantothenate kinase; tr 61.2 3.8 0.00013 37.8 2.3 16 141-156 91-106 (312)
406 1sxj_C Activator 1 40 kDa subu 61.1 10 0.00035 35.2 5.4 16 142-157 48-63 (340)
407 3eaq_A Heat resistant RNA depe 61.1 4 0.00014 35.1 2.4 73 171-253 31-105 (212)
408 2ce7_A Cell division protein F 61.1 9.2 0.00031 37.5 5.2 53 99-156 12-65 (476)
409 3umf_A Adenylate kinase; rossm 61.0 4.4 0.00015 35.1 2.5 19 141-159 30-48 (217)
410 1pzn_A RAD51, DNA repair and r 60.4 5.8 0.0002 37.2 3.5 20 140-159 131-150 (349)
411 2iyv_A Shikimate kinase, SK; t 60.3 3.7 0.00013 34.2 1.9 17 141-157 3-19 (184)
412 3fb4_A Adenylate kinase; psych 60.3 3.3 0.00011 35.6 1.7 17 142-158 2-18 (216)
413 3qf7_A RAD50; ABC-ATPase, ATPa 60.3 3.2 0.00011 39.3 1.7 17 141-157 24-40 (365)
414 2r8r_A Sensor protein; KDPD, P 60.1 5.7 0.0002 34.5 3.1 19 141-159 7-25 (228)
415 3fvq_A Fe(3+) IONS import ATP- 60.0 5.2 0.00018 37.6 3.1 25 141-167 31-55 (359)
416 3tui_C Methionine import ATP-b 59.9 5.6 0.00019 37.4 3.3 25 141-167 55-79 (366)
417 3zyw_A Glutaredoxin-3; metal b 59.9 36 0.0012 25.5 7.4 46 327-372 14-65 (111)
418 2c95_A Adenylate kinase 1; tra 59.9 3.4 0.00012 34.7 1.7 17 141-157 10-26 (196)
419 1e6c_A Shikimate kinase; phosp 59.8 3.7 0.00013 33.7 1.8 17 141-157 3-19 (173)
420 1in4_A RUVB, holliday junction 59.7 4.2 0.00014 37.8 2.4 16 141-156 52-67 (334)
421 4a74_A DNA repair and recombin 59.7 4 0.00014 35.3 2.1 17 141-157 26-42 (231)
422 2p6n_A ATP-dependent RNA helic 59.7 7.5 0.00026 32.7 3.8 73 171-253 54-128 (191)
423 2fwr_A DNA repair protein RAD2 59.4 20 0.00068 34.8 7.4 68 303-386 111-179 (472)
424 3asz_A Uridine kinase; cytidin 59.4 3.4 0.00011 35.3 1.6 16 141-156 7-22 (211)
425 4gl2_A Interferon-induced heli 59.4 3.3 0.00011 42.9 1.8 95 304-402 26-142 (699)
426 3i5x_A ATP-dependent RNA helic 59.2 41 0.0014 33.4 9.9 98 302-402 113-232 (563)
427 2yyz_A Sugar ABC transporter, 59.1 5.9 0.0002 37.2 3.3 25 141-167 30-54 (359)
428 1z47_A CYSA, putative ABC-tran 59.1 5.8 0.0002 37.2 3.2 25 141-167 42-66 (355)
429 1sxj_A Activator 1 95 kDa subu 59.1 10 0.00034 37.7 5.2 17 141-157 78-94 (516)
430 3nwj_A ATSK2; P loop, shikimat 58.9 4.8 0.00016 35.7 2.5 20 136-157 46-65 (250)
431 3dl0_A Adenylate kinase; phosp 58.7 3.6 0.00012 35.3 1.7 16 142-157 2-17 (216)
432 2hhg_A Hypothetical protein RP 58.6 7.5 0.00026 30.6 3.5 39 327-365 85-124 (139)
433 3sr0_A Adenylate kinase; phosp 58.6 4.6 0.00016 34.6 2.3 18 142-159 2-19 (206)
434 3rlf_A Maltose/maltodextrin im 58.6 6.1 0.00021 37.4 3.3 25 141-167 30-54 (381)
435 1nks_A Adenylate kinase; therm 58.5 3.4 0.00012 34.5 1.4 16 142-157 3-18 (194)
436 1g5t_A COB(I)alamin adenosyltr 58.5 6.1 0.00021 33.5 2.9 35 141-178 29-63 (196)
437 2q6t_A DNAB replication FORK h 58.3 10 0.00035 36.8 5.0 48 141-191 201-248 (444)
438 1vma_A Cell division protein F 58.2 10 0.00034 34.7 4.6 16 141-156 105-120 (306)
439 3tqc_A Pantothenate kinase; bi 58.1 8.3 0.00028 35.6 4.1 15 142-156 94-108 (321)
440 2pjz_A Hypothetical protein ST 58.1 6.3 0.00022 35.2 3.2 24 141-166 31-54 (263)
441 2og2_A Putative signal recogni 58.1 3.8 0.00013 38.5 1.8 35 141-178 158-192 (359)
442 1xp8_A RECA protein, recombina 57.9 6.2 0.00021 37.2 3.2 38 141-181 75-112 (366)
443 2pez_A Bifunctional 3'-phospho 57.9 4.1 0.00014 33.8 1.8 16 141-156 6-21 (179)
444 2oca_A DAR protein, ATP-depend 57.8 23 0.00077 34.9 7.6 92 304-402 132-231 (510)
445 2cdn_A Adenylate kinase; phosp 57.8 4.5 0.00015 34.2 2.1 17 141-157 21-37 (201)
446 3kta_A Chromosome segregation 57.8 4.6 0.00016 33.4 2.1 16 141-156 27-42 (182)
447 2it1_A 362AA long hypothetical 57.7 6.4 0.00022 37.0 3.3 24 141-166 30-53 (362)
448 1zd8_A GTP:AMP phosphotransfer 57.6 3.6 0.00012 35.7 1.4 17 141-157 8-24 (227)
449 1c9k_A COBU, adenosylcobinamid 57.6 4.9 0.00017 33.6 2.2 43 143-192 2-44 (180)
450 2bwj_A Adenylate kinase 5; pho 57.6 3.8 0.00013 34.4 1.6 17 141-157 13-29 (199)
451 3sqw_A ATP-dependent RNA helic 57.2 47 0.0016 33.3 9.9 98 302-402 62-181 (579)
452 2k0z_A Uncharacterized protein 57.2 13 0.00046 27.7 4.5 39 326-364 54-92 (110)
453 3lda_A DNA repair protein RAD5 57.2 7.6 0.00026 37.1 3.7 40 140-179 178-220 (400)
454 1v43_A Sugar-binding transport 57.1 6.6 0.00023 37.1 3.3 25 141-167 38-62 (372)
455 2jtq_A Phage shock protein E; 57.1 23 0.00077 24.8 5.5 37 326-363 39-76 (85)
456 2vli_A Antibiotic resistance p 57.1 4 0.00014 33.8 1.6 17 141-157 6-22 (183)
457 1m7g_A Adenylylsulfate kinase; 57.0 4.2 0.00014 34.8 1.8 16 141-156 26-41 (211)
458 1qf9_A UMP/CMP kinase, protein 56.9 3.8 0.00013 34.2 1.4 17 141-157 7-23 (194)
459 1aky_A Adenylate kinase; ATP:A 56.9 4.5 0.00015 34.8 2.0 17 141-157 5-21 (220)
460 2zu0_C Probable ATP-dependent 56.8 5.7 0.00019 35.6 2.7 23 141-165 47-69 (267)
461 1jjv_A Dephospho-COA kinase; P 56.6 4.1 0.00014 34.6 1.7 15 142-156 4-18 (206)
462 1ak2_A Adenylate kinase isoenz 56.5 5.9 0.0002 34.5 2.7 17 141-157 17-33 (233)
463 3hu3_A Transitional endoplasmi 56.4 4.2 0.00014 40.2 1.8 17 141-157 239-255 (489)
464 2d2e_A SUFC protein; ABC-ATPas 56.4 5.8 0.0002 35.1 2.6 22 141-164 30-51 (250)
465 4f4c_A Multidrug resistance pr 56.2 8.2 0.00028 43.3 4.3 26 141-168 1106-1131(1321)
466 3b5x_A Lipid A export ATP-bind 56.2 8.3 0.00028 39.0 4.1 25 141-167 370-394 (582)
467 1cke_A CK, MSSA, protein (cyti 56.1 5.2 0.00018 34.5 2.2 17 141-157 6-22 (227)
468 2yvu_A Probable adenylyl-sulfa 56.1 4.5 0.00015 33.7 1.8 17 141-157 14-30 (186)
469 3f9v_A Minichromosome maintena 55.8 4.7 0.00016 40.9 2.1 15 142-156 329-343 (595)
470 1g29_1 MALK, maltose transport 55.8 7 0.00024 36.9 3.2 25 141-167 30-54 (372)
471 4akg_A Glutathione S-transfera 55.8 6.7 0.00023 47.0 3.7 48 109-160 892-943 (2695)
472 1zak_A Adenylate kinase; ATP:A 55.6 4.3 0.00015 35.0 1.6 17 141-157 6-22 (222)
473 2i3b_A HCR-ntpase, human cance 55.4 6.4 0.00022 33.2 2.6 16 141-156 2-17 (189)
474 2pt5_A Shikimate kinase, SK; a 55.4 4.5 0.00016 32.9 1.7 16 142-157 2-17 (168)
475 3pxi_A Negative regulator of g 55.3 4.6 0.00016 42.4 2.0 18 140-157 201-218 (758)
476 2if2_A Dephospho-COA kinase; a 55.3 4.1 0.00014 34.5 1.4 15 142-156 3-17 (204)
477 2bbw_A Adenylate kinase 4, AK4 55.3 4.4 0.00015 35.7 1.7 16 141-156 28-43 (246)
478 3auy_A DNA double-strand break 55.2 4 0.00014 38.6 1.4 16 141-156 26-41 (371)
479 2jaq_A Deoxyguanosine kinase; 55.0 4.5 0.00015 34.1 1.7 15 142-156 2-16 (205)
480 2wwf_A Thymidilate kinase, put 55.0 5 0.00017 34.1 1.9 17 141-157 11-27 (212)
481 3d31_A Sulfate/molybdate ABC t 54.8 5.6 0.00019 37.2 2.3 25 141-167 27-51 (348)
482 1vee_A Proline-rich protein fa 54.7 12 0.00039 29.3 3.9 38 326-363 72-110 (134)
483 3qf4_B Uncharacterized ABC tra 54.5 8.1 0.00028 39.2 3.7 25 141-167 382-406 (598)
484 1j8m_F SRP54, signal recogniti 54.4 15 0.00051 33.4 5.1 41 141-184 99-141 (297)
485 3d1p_A Putative thiosulfate su 54.4 11 0.00036 29.7 3.7 38 327-364 90-128 (139)
486 2pju_A Propionate catabolism o 54.2 1.1E+02 0.0036 26.4 10.9 132 327-476 11-149 (225)
487 3a4m_A L-seryl-tRNA(SEC) kinas 53.8 4.8 0.00016 35.8 1.7 17 141-157 5-21 (260)
488 2yl4_A ATP-binding cassette SU 53.8 8.4 0.00029 39.1 3.7 25 141-167 371-395 (595)
489 2pbr_A DTMP kinase, thymidylat 53.8 4.9 0.00017 33.5 1.7 16 142-157 2-17 (195)
490 2yhs_A FTSY, cell division pro 53.7 5.2 0.00018 39.3 2.0 34 141-177 294-327 (503)
491 1g41_A Heat shock protein HSLU 53.6 5 0.00017 38.9 1.8 16 141-156 51-66 (444)
492 1e4v_A Adenylate kinase; trans 53.6 4.5 0.00015 34.7 1.4 16 142-157 2-17 (214)
493 1xjc_A MOBB protein homolog; s 53.5 6 0.00021 32.6 2.1 16 141-156 5-20 (169)
494 3cf2_A TER ATPase, transitiona 53.5 15 0.00053 38.5 5.6 54 98-156 199-254 (806)
495 2xgj_A ATP-dependent RNA helic 53.5 18 0.00061 39.3 6.3 89 303-402 104-198 (1010)
496 2z0h_A DTMP kinase, thymidylat 52.6 5.3 0.00018 33.5 1.7 15 143-157 3-17 (197)
497 2xb4_A Adenylate kinase; ATP-b 52.3 5.3 0.00018 34.6 1.7 16 142-157 2-17 (223)
498 3qks_A DNA double-strand break 52.3 5.4 0.00018 34.0 1.7 16 141-156 24-39 (203)
499 2bbs_A Cystic fibrosis transme 52.3 7.5 0.00026 35.3 2.7 23 141-165 65-87 (290)
500 2yan_A Glutaredoxin-3; oxidore 52.0 53 0.0018 24.0 7.2 48 328-375 16-69 (105)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-62 Score=490.85 Aligned_cols=361 Identities=30% Similarity=0.452 Sum_probs=313.8
Q ss_pred ccCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC-
Q 011667 90 TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN- 168 (480)
Q Consensus 90 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~- 168 (480)
..+...+.+..+|+++++++.+++++.+ +||..|+|+|.++||.+++| +|++++||||||||++|++|++.++...
T Consensus 46 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp EESSSCCCCCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred ecCCCCCCCcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 3456667788999999999999999986 99999999999999999999 9999999999999999999999887432
Q ss_pred ----CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccc
Q 011667 169 ----LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244 (480)
Q Consensus 169 ----~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 244 (480)
..++++|||+||++|+.|+++.+.+++...++.+.+++++.....+ ......+++|+|+||++|.+++.+..+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ--NECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH--HHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH--HHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 2467999999999999999999999998888887777776643321 1222236899999999999999988888
Q ss_pred cCceEEEEEcCchhhhh--------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEE
Q 011667 245 FSRLKILVYDEADHMLD--------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYK 304 (480)
Q Consensus 245 ~~~~~~lViDEah~l~~--------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
+.++++||+||||+|++ ++++||||++..+..++..++.++..+.+.........+.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 99999999999999865 3789999999999999999998888877776666677788887
Q ss_pred EEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011667 305 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 384 (480)
Q Consensus 305 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~ 384 (480)
..+.. ..+...+.+.+... ..++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 281 ~~~~~-~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 281 YEVNK-YAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EECCG-GGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEeCc-HHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 77654 45666666644443 345999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 385 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 385 T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.|++|+.+.++......+.+.+.....++|
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p--------~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMP--------SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCC--------SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred chhhhCCCCcccCCEEEEECCC--------CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999 88999999999999999999999999977777788889998887777777
Q ss_pred CCH
Q 011667 465 NSD 467 (480)
Q Consensus 465 ~~~ 467 (480)
..+
T Consensus 429 ~~l 431 (434)
T 2db3_A 429 DFL 431 (434)
T ss_dssp GGG
T ss_pred HHH
Confidence 544
No 2
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.7e-60 Score=483.24 Aligned_cols=371 Identities=39% Similarity=0.693 Sum_probs=163.2
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCC
Q 011667 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172 (480)
Q Consensus 93 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~ 172 (480)
..+..+..+|.+++|++.+++++.. +||..|+|+|.++++.++.+.+++++++||||||||++|++|++..+.....++
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~ 163 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC
Confidence 3444567899999999999999997 999999999999999999875589999999999999999999999998777777
Q ss_pred eEEEEecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEE
Q 011667 173 QALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKI 250 (480)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~ 250 (480)
++|||+||++|+.|+++.+.++.... ++.+.+..++..... .....++|+|+||++|.+++.+ ..+.+.++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-----cccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 99999999999999999999987654 355555554443221 1123468999999999999966 4567789999
Q ss_pred EEEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchh
Q 011667 251 LVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 311 (480)
Q Consensus 251 lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (480)
|||||||++++ ++++||||++..+..+...++.++..+...........+.+.+..+....
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 318 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHH
Confidence 99999999875 38999999999999999999998888888777777778888888777666
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
.+...+...+.. . ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 319 ~~~~~l~~~~~~-~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~G 396 (479)
T 3fmp_B 319 EKFQALCNLYGA-I-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhh-c-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccC
Confidence 666666553322 2 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHH
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDF 470 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~ 470 (480)
+|+|++++||+||+|+....+ .+...|+||+||+||.|+.|.|++|+.+.++..+++.++++++..+.+++ ...+++
T Consensus 397 lDip~v~~VI~~d~p~~~~~~--~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 474 (479)
T 3fmp_B 397 IDVEQVSVVINFDLPVDKDGN--PDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 474 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCCEEEEecCCCCCccC--CCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHHHH
Confidence 999999999999999654332 36789999999999999999999999988888899999999999999987 556665
Q ss_pred HHH
Q 011667 471 KAA 473 (480)
Q Consensus 471 ~~~ 473 (480)
++.
T Consensus 475 e~~ 477 (479)
T 3fmp_B 475 EKI 477 (479)
T ss_dssp ---
T ss_pred Hhh
Confidence 543
No 3
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-57 Score=453.95 Aligned_cols=372 Identities=39% Similarity=0.696 Sum_probs=316.4
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
...+..+..+|+++++++.+++++.+ +||..|+|+|.++++.++.+.++++++++|||+|||++|++|++..+.....+
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~ 95 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCC
Confidence 44555678899999999999999987 99999999999999999987558999999999999999999999998877777
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceE
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLK 249 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~ 249 (480)
+++||++||++|+.|+++.+.++.... ++.+....++..... .....++|+|+||++|.+++.. ..+.+.+++
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-----hhcCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 799999999999999999999987654 455555554443222 1123578999999999999866 556778999
Q ss_pred EEEEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch
Q 011667 250 ILVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310 (480)
Q Consensus 250 ~lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+||+||||++.+ +++++|||++..+..+...++.++..+...........+.+.+..+...
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh
Confidence 999999999865 3899999999999999999999888888887777888889999988888
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..+...+...+... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 88888777744433 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHH
Q 011667 391 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDED 469 (480)
Q Consensus 391 Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~ 469 (480)
|+|+|++++||+|++|+....+ .+...|+||+||+||.|+.|.|++|+.+.++..+++.++++++..+.+++ +..++
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~--~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGN--PDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 406 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSS--BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-------
T ss_pred CCCccCCCEEEEECCCCCCCCC--cchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHH
Confidence 9999999999999999654332 36789999999999999999999999887778899999999999999997 55555
Q ss_pred HHHH
Q 011667 470 FKAA 473 (480)
Q Consensus 470 ~~~~ 473 (480)
+++.
T Consensus 407 ~~~~ 410 (412)
T 3fht_A 407 IEKI 410 (412)
T ss_dssp ----
T ss_pred HHHh
Confidence 5543
No 4
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-57 Score=450.11 Aligned_cols=368 Identities=44% Similarity=0.767 Sum_probs=323.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.+ +||..|+|+|.++++.++.+.++++++++|||+|||++|++|++..+.....++++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 5789999999999999987 999999999999999999975589999999999999999999999987766778999999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
||++|+.|+++.+.+++...++.+....++..... ....++|+|+||++|..++......+.++++||+||||+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 99999999999999998877777666655442221 122578999999999999988778899999999999998
Q ss_pred hhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 259 MLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 259 l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
+.+ +++++|||+++.+..+...++..+..+...........+.+.+..+.....+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 865 3799999999999999999988888888777777778888888888887777777766
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
+.... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 -~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 -LYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp -HHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred -HHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 33333 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhC-CcceecC-CCHHHHHHHHHHc
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD-IKVTEVR-NSDEDFKAALKAA 477 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~-~~~~~~~-~~~~~~~~~~~~~ 477 (480)
||+|++|+..... .++..|+||+||+||.|++|.|++|+.+.++..+++.++++++ ..+.+++ ...+.+++.++++
T Consensus 315 Vi~~~~p~~~~~~--~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T 3pey_A 315 VVNYDLPTLANGQ--ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKV 392 (395)
T ss_dssp EEESSCCBCTTSS--BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHHHHHHHH
T ss_pred EEEcCCCCCCcCC--CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHHHHHHHh
Confidence 9999999422111 2789999999999999999999999998888889999999999 9999998 7888888887763
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-58 Score=458.88 Aligned_cols=355 Identities=36% Similarity=0.612 Sum_probs=312.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
....+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....+.++||
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 110 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALI 110 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEE
T ss_pred cCCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEE
Confidence 346689999999999999986 99999999999999999999 999999999999999999999999876666789999
Q ss_pred EecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCc
Q 011667 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 256 (480)
++||++|+.|+++.+.+++...++.+...+++...... ......+++|+|+||++|.+++....+.+.++++||+|||
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED--IRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH--HHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH--HHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 99999999999999999998888877776665533211 1111224689999999999999988888899999999999
Q ss_pred hhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHH
Q 011667 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 318 (480)
Q Consensus 257 h~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 318 (480)
|++.+ +++++|||++..+..+...++.++..+...........+.+.+..+.....+...+.
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHH
Confidence 99765 389999999998888777888888877777777777888888888877777777777
Q ss_pred HHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 011667 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 398 (480)
Q Consensus 319 ~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 398 (480)
..+... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 269 ~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 269 DLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 744443 456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCH
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 467 (480)
+||+|++| .++..|+||+||+||.|++|.|++|+.+ ++...+..++++++..+.++|.+.
T Consensus 347 ~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 347 LIINYDLP--------NNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEEECCC--------CCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCCceecccch
Confidence 99999999 7899999999999999999999999986 467788999999999999998543
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-58 Score=455.78 Aligned_cols=360 Identities=29% Similarity=0.479 Sum_probs=300.3
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---
Q 011667 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--- 168 (480)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~--- 168 (480)
+...+.+..+|+++++++.+++++.. +||..|+|+|.++||.++.| ++++++||||||||++|++|++..+...
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEK--RDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 44455678899999999999999986 89999999999999999998 9999999999999999999999876422
Q ss_pred ---------------CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHH
Q 011667 169 ---------------LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGT 233 (480)
Q Consensus 169 ---------------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~ 233 (480)
..++++||++||++|+.|+++.+.+++...++.+...+++..... .......+++|+|+||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ--QIRDLERGCHLLVATPGR 161 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHH--HHHHHTTCCSEEEECHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHH--HHHHhhCCCCEEEEChHH
Confidence 123689999999999999999999998877887777766553322 111122357999999999
Q ss_pred HHHHHhcCccccCceEEEEEcCchhhhh----------------------hheeeeccccHHHHHHHHHHhcccceeeec
Q 011667 234 IKKWMSAKKLGFSRLKILVYDEADHMLD----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVK 291 (480)
Q Consensus 234 l~~~l~~~~~~~~~~~~lViDEah~l~~----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~ 291 (480)
|.+++....+.+.++++||+||||++.+ ++++||||++..+..+...++..+..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 9999998888889999999999999764 268999999999998888888888777766
Q ss_pred cccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHH
Q 011667 292 KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~ 371 (480)
........+.+.+..+.. ..+...+.+.+. .....+++||||++++.++.++..|...++.+..+||++++.+|..++
T Consensus 242 ~~~~~~~~i~~~~~~~~~-~~~~~~l~~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEE-SDKRSFLLDLLN-ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp ----CCSSEEEEEEECCG-GGHHHHHHHHHH-TCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCCccCceEEEEEecc-HhHHHHHHHHHH-hcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 666666677777777654 456666666443 334678999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHH
Q 011667 372 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEK 451 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~ 451 (480)
+.|++|+.+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+.+. +...+..
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~ 390 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKD 390 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCC--------SSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHHH
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCC--------CCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999864 5556777
Q ss_pred HHHHhCCcceecCCCH
Q 011667 452 IERYFDIKVTEVRNSD 467 (480)
Q Consensus 452 i~~~l~~~~~~~~~~~ 467 (480)
+.+++.....+++...
T Consensus 391 l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 391 LLDLLVEAKQEVPSWL 406 (417)
T ss_dssp HHHHHHHTTCCCCHHH
T ss_pred HHHHHHHhcCcCCHHH
Confidence 8888866666665433
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.3e-57 Score=449.73 Aligned_cols=357 Identities=36% Similarity=0.602 Sum_probs=298.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
...+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++.+|||||||++|++|++..+.....+.++||+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred hhcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCC--CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 45789999999999999987 99999999999999999998 8999999999999999999999998776667899999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+||++|+.|+++.+..++...+..+...+++..... .........++|+|+||++|.+++....+.+.++++||+||||
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA-EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH-HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH-HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 999999999999999998888877766666553221 1111222457999999999999999888888899999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
++.+ ++++||||++..+......++.++..+...........+.+.+........+...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 9765 2799999999999888888888888888877777888888988888877778777776
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+.. . ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 274 ~~~~-~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~ 351 (414)
T 3eiq_A 274 LYET-L-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 351 (414)
T ss_dssp HHHS-S-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSC
T ss_pred HHHh-C-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCE
Confidence 4333 3 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCHHH
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 469 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 469 (480)
||+|++| .++..|+||+||+||.|++|.|++|+++. +...++.++++++..+++++.+..+
T Consensus 352 Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 352 VINYDLP--------TNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp EEESSCC--------SSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred EEEeCCC--------CCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 9999999 78999999999999999999999999865 6677899999999999999876654
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-55 Score=436.02 Aligned_cols=353 Identities=31% Similarity=0.528 Sum_probs=300.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++..+.....+.++||++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 83 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 83 (391)
T ss_dssp --CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTT--CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC
Confidence 4579999999999999987 89999999999999999998 99999999999999999999999887666677999999
Q ss_pred cCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
||++|+.|+++.+.++.... ++.+....++....... .......++|+|+||++|..++......+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 99999999999999997765 56666666554322111 00011236899999999999998877788999999999999
Q ss_pred hhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeecccc-ccccccEEEEEEcCchhHHHHHH
Q 011667 258 HMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE-LSLESVKQYKVYCPDELAKVMVI 317 (480)
Q Consensus 258 ~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l 317 (480)
++.+ +++++|||++..+...+..++..+..+...... .....+.+.+..+.. ..+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHH
Confidence 9865 279999999999988888888887776655433 334556666666543 4555666
Q ss_pred HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 011667 318 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV 397 (480)
Q Consensus 318 ~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v 397 (480)
...+... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 242 ~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 242 FDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 6544333 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCC
Q 011667 398 NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 466 (480)
Q Consensus 398 ~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~ 466 (480)
++||+|++| .++..|+||+||+||.|++|.|++|+.+.++..+++.+++.++..+.+++..
T Consensus 320 ~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 320 NIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEESSCC--------SSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CEEEEeCCC--------CCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999 7899999999999999999999999998777888999999999999999854
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4e-55 Score=434.15 Aligned_cols=352 Identities=37% Similarity=0.603 Sum_probs=299.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
...+|+++++++.+++++.+ +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++..+.....+.++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 46689999999999999987 99999999999999999998 8999999999999999999999988766667799999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+|+++|+.|+++.+.+++...++.+....++..... ........++|+|+||++|..++......+.++++||+||||
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD--DILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH--HHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 999999999999999998887877766665543221 111123357999999999999998877778999999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
++.+ +++++|||++..+...+...+..+..+..... .....+.+++..+. ...+...+..
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~~~l~~ 251 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVE-ERQKLHCLNT 251 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECC-GGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEec-hhhHHHHHHH
Confidence 8764 37899999999998888888877665544332 34455666666554 3455565555
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+.. . ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 252 ~~~~-~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 252 LFSK-L-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHH-S-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHhh-c-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 3333 2 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCH
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 467 (480)
||+|++| .++..|+||+||+||.|++|.|++|+++. +...+..+++.++..+.+++...
T Consensus 330 Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 330 VINFDFP--------KTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEESSCC--------SSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEeCCC--------CCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccccc
Confidence 9999999 78999999999999999999999999865 66788999999999999998543
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.7e-56 Score=440.62 Aligned_cols=353 Identities=37% Similarity=0.610 Sum_probs=163.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
...+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++..+.....++++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHT--CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 35689999999999999987 99999999999999999999 9999999999999999999999998776677899999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+|+++|+.|+++.+.++....++.+...+++......... ...++|+|+||++|...+....+.+.++++||+||||
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH---HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh---cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 9999999999999999988888877777665542211100 0146899999999999998877788899999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
++.+ +++++|||++..+......++..+..+...........+.+.+..+.....+...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 9754 3899999999998888888888888777776666666677766666555545555554
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+ ... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 253 ~~-~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 253 LY-DSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-hcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 33 222 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecCCCH
Q 011667 400 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 467 (480)
Q Consensus 400 Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 467 (480)
||+|++| .++..|+||+||+||.|++|.|++|+++. +...+..++++++..+++++...
T Consensus 331 Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 331 VINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEeCCC--------CCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcch
Confidence 9999999 78899999999999999999999999865 56688899999999999887543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.7e-54 Score=445.11 Aligned_cols=355 Identities=26% Similarity=0.390 Sum_probs=281.9
Q ss_pred CCCcccCC----CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC----CC
Q 011667 99 ATTFEDLN----LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LK 170 (480)
Q Consensus 99 ~~~f~~~~----l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~----~~ 170 (480)
..+|.++. |++.+++++.. +||..|+|+|.++|+.++.+.++++++.||||+|||++|++|++..+... ..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 34555543 99999999986 99999999999999999943338999999999999999999999887432 23
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcc----cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-cccc
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGF 245 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~ 245 (480)
++++|||+||++|+.|+++.+.++... ..+.+...+++..... ........+++|+|+||++|.+++... ...+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH-HHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 568999999999999999999998632 2244444444432111 111111124789999999999998764 4467
Q ss_pred CceEEEEEcCchhhhh-------------------------hheeeeccccHHHHHHHHHHhcccceeeecc----cccc
Q 011667 246 SRLKILVYDEADHMLD-------------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EELS 296 (480)
Q Consensus 246 ~~~~~lViDEah~l~~-------------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 296 (480)
..+++|||||||++++ ++++||||+++.+..++..++..+..+.+.. ....
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999864 3799999999999888888887766655433 2233
Q ss_pred ccccEEEEEEcCchhHHHHHHHHHHHHh---cccCCcEEEEeCchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHH
Q 011667 297 LESVKQYKVYCPDELAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKI 370 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~ 370 (480)
...+.+.+............+...+... .....++||||+++..++.++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 4456666665554433333222222222 235679999999999999999999876 8999999999999999999
Q ss_pred HHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHH
Q 011667 371 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 450 (480)
Q Consensus 371 ~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~ 450 (480)
++.|++|+.+|||||+++++|+|+|++++||+|++| .++..|+||+||+||+|+.|.|++|+.+ ++..+++
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~ 404 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICK-DELPFVR 404 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC--------CCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHH
Confidence 999999999999999999999999999999999999 8899999999999999999999999986 4677889
Q ss_pred HHHHHhCCcceecC
Q 011667 451 KIERYFDIKVTEVR 464 (480)
Q Consensus 451 ~i~~~l~~~~~~~~ 464 (480)
.+++..+..+....
T Consensus 405 ~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 405 ELEDAKNIVIAKQE 418 (579)
T ss_dssp HHHHHHCCCCCEEE
T ss_pred HHHHHhCCCccccc
Confidence 99999888876653
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-53 Score=441.42 Aligned_cols=347 Identities=26% Similarity=0.390 Sum_probs=277.6
Q ss_pred CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC----CCCeEEEEecCHH
Q 011667 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRE 182 (480)
Q Consensus 107 l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~----~~~~~lil~Pt~~ 182 (480)
+++.+++++.. +||..|+|+|.++|+.++.+.+++++++||||||||++|++|+++.+.... .++++|||+||++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 99999999986 899999999999999999543389999999999999999999998875432 3458999999999
Q ss_pred HHHHHHHHHHHHhcc----cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEEEEEcCch
Q 011667 183 LAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEAD 257 (480)
Q Consensus 183 La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 257 (480)
|+.|+++.+.++... ....+...+++..... ........+++|+|+||++|.+++... ...++++++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH-HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 999999999987542 1233444444432111 111111224789999999999988764 3457889999999999
Q ss_pred hhhh-------------------------hheeeeccccHHHHHHHHHHhcccceeeecc----ccccccccEEEEEEcC
Q 011667 258 HMLD-------------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EELSLESVKQYKVYCP 308 (480)
Q Consensus 258 ~l~~-------------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 308 (480)
++++ ++++||||+++.+..++..++..+..+.... .......+.+.+....
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 9764 2799999999998888888887766555432 2223445666666655
Q ss_pred chhHHHHHHHHHHHHh---cccCCcEEEEeCchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 309 DELAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~---~~~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
....+...+...+... .....++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 4434333333222222 235779999999999999999999876 8999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCccee
Q 011667 383 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 462 (480)
Q Consensus 383 v~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~ 462 (480)
|||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+.+ ++..+++.+++..+..+..
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCE
T ss_pred EEcchhhcCCCcccCCEEEEECCC--------CchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999 8899999999999999999999999986 4677889999998888876
Q ss_pred cC
Q 011667 463 VR 464 (480)
Q Consensus 463 ~~ 464 (480)
..
T Consensus 468 ~~ 469 (563)
T 3i5x_A 468 QE 469 (563)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-52 Score=410.40 Aligned_cols=343 Identities=31% Similarity=0.518 Sum_probs=290.1
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.+ +||..|+|+|.++++.++++. +++++.+|||+|||++|++|++..+... .+.++||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTC-SEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCC-CCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEc
Confidence 4679999999999999987 899999999999999999872 6999999999999999999999887653 466899999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
|+++|+.|+++.+.++....++.+....++......... ...++|+|+||++|..++......+.++++||+||||+
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 999999999999999988777776666655432211000 01478999999999999988777889999999999999
Q ss_pred hhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHH
Q 011667 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 320 (480)
Q Consensus 259 l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 320 (480)
+.+ +++++|||++.........++.++..+.... ...+.+.+.... ...+...+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~l~~~ 233 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVN-ENERFEALCRL 233 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECC-GGGHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeC-hHHHHHHHHHH
Confidence 764 2689999999998888888877665544322 224555555554 34555555553
Q ss_pred HHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 011667 321 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 400 (480)
Q Consensus 321 l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V 400 (480)
+. ....++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 234 l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 234 LK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred Hh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 32 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 401 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 401 i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|++++| .++..|+||+||+||.|++|.+++++++ .+...+..+++.++..+++++
T Consensus 311 i~~~~~--------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 311 INYHLP--------QNPESYMHRIGRTGRAGKKGKAISIINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EESSCC--------SCHHHHHHHSTTTCCSSSCCEEEEEECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred EEecCC--------CCHHHhhhcccccccCCCccEEEEEEcH-HHHHHHHHHHHHhCCCCceec
Confidence 999999 7899999999999999999999999976 467788999999999998774
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-54 Score=438.04 Aligned_cols=368 Identities=38% Similarity=0.631 Sum_probs=258.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
....|...++++.+++.+.. .|+..|+++|.++|+.+++|.++++++.+|||||||++|+++++..+.....++++||+
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred cccccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34456777899999999986 89999999999999999987458999999999999999999999998877667799999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+|+++|+.|+++.+.+++...++......++..... ....++|+|+||++|..++....+.+.++++||+||||
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC----------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHH
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechh
Confidence 999999999999999998766655444433332111 12257999999999999998888888999999999999
Q ss_pred hhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHH
Q 011667 258 HMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 318 (480)
Q Consensus 258 ~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 318 (480)
++.+ +++++|||+++.+..+...++.++..+...........+.+.+........+...+.
T Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 349 (508)
T 3fho_A 270 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLV 349 (508)
T ss_dssp HHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHH
Confidence 8865 279999999999999899998888888777777777777777877776677777666
Q ss_pred HHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 011667 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 398 (480)
Q Consensus 319 ~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 398 (480)
..+ ... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 350 ~ll-~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~ 427 (508)
T 3fho_A 350 ELY-GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVN 427 (508)
T ss_dssp HHH-C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCC
T ss_pred HHH-Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCC
Confidence 633 322 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHH
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKA 476 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 476 (480)
+||+|++|+..... .++..|+||+||+||.|++|.|++|+.+.++...+..++++++..+.+++ ...++++++++.
T Consensus 428 ~VI~~~~p~~~~~~--~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~k~~~~ 504 (508)
T 3fho_A 428 LVVNYDMPLDQAGR--PDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKN 504 (508)
T ss_dssp EEEC----CC-------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----------------
T ss_pred EEEEECCCCcccCC--CCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHHHHHHHH
Confidence 99999999654332 46889999999999999999999999988788889999999999999998 556777776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.2e-50 Score=416.14 Aligned_cols=320 Identities=19% Similarity=0.231 Sum_probs=255.0
Q ss_pred cccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 102 f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
+.++++++.+.+.|...+||..|+|+|.++|+.+++| +|+++.+|||+|||++|++|++.. .+++|||+|++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g--~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~ 94 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAG--KEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLI 94 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTT--CCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHH
Confidence 3458899999999998789999999999999999999 999999999999999999999864 45899999999
Q ss_pred HHHHHHHHHHHHHhcccCceeeEeecCCCCCccc-c---cCCCCCCCeEEEeChHHHH------HHHhcCccccCceEEE
Q 011667 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP-I---SKRPPVTAQVVIGTPGTIK------KWMSAKKLGFSRLKIL 251 (480)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~I~v~Tp~~l~------~~l~~~~~~~~~~~~l 251 (480)
+|+.|+.+.+..+ ++.+..+.++....... . .......++|+|+||++|. +.+.. ...+.++++|
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~i 169 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEE
Confidence 9999999999887 45555555444322110 0 0012345899999999874 23332 3456789999
Q ss_pred EEcCchhhhh----------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCc
Q 011667 252 VYDEADHMLD----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 309 (480)
Q Consensus 252 ViDEah~l~~----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
||||||++.+ ++++||||+++.+...+..++..+....... .....++...+.....
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCS
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCC
Confidence 9999999764 2789999999998887877776554433322 2223334333333322
Q ss_pred -hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 011667 310 -ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 310 -~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
...++..+.+.+... ...+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 249 ~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 234445555433222 256899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 389 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
++|||+|++++||||++| .|++.|+||+||+||.|++|.|++||+..|
T Consensus 328 ~~GID~p~V~~VI~~~~p--------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMS--------KSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp CTTCCCSCEEEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred hcCCCcccccEEEEeCCC--------CCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 999999999999999999 899999999999999999999999997543
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-50 Score=391.65 Aligned_cols=318 Identities=27% Similarity=0.486 Sum_probs=261.7
Q ss_pred CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 107 l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
|++.+.+++.. +||..|+|+|.++++.+++| +++++.+|||+|||++|++|++.. +.++||++|+++|+.|
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQG--KNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHH
Confidence 57889999986 99999999999999999998 899999999999999999999874 5689999999999999
Q ss_pred HHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh----
Q 011667 187 NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---- 262 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~---- 262 (480)
+++.+.+++...+..+...+++....... . ....++|+|+||++|..++....+.+.++++||+||||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQI--N-RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHH--H-HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHH--h-hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999887777776666554322111 0 0113789999999999999887777899999999999998652
Q ss_pred --------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccC
Q 011667 263 --------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 328 (480)
Q Consensus 263 --------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 328 (480)
++++|||++..+...+..++..+..+... .....+.+.+........... ..+.. ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ 220 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSKV---QALRE--NKD 220 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHHH---HHHHT--CCC
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHHH---HHHHh--CCC
Confidence 56889999999988888888776655332 334455666666655433221 21221 367
Q ss_pred CcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK 408 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~ 408 (480)
+++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~-- 294 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP-- 294 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC--
T ss_pred CcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC--
Confidence 899999999999999998885 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCC
Q 011667 409 HGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 458 (480)
Q Consensus 409 ~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~ 458 (480)
.|+..|+||+||+||.|++|.|++|+. .+..+++.+++.++.
T Consensus 295 ------~s~~~~~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 295 ------QDLRTYIHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp ------SSHHHHHHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-----
T ss_pred ------CCHHHhhHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhcc
Confidence 789999999999999999999999998 466677778776653
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.1e-49 Score=403.01 Aligned_cols=318 Identities=17% Similarity=0.247 Sum_probs=249.6
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.+|+++++++.+.+.|.+.+||..|+|+|.++|+.+++| +++++.+|||+|||++|++|++.. ...+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSG--RDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECC
Confidence 479999999999999997799999999999999999999 999999999999999999999854 357999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+++|+.|+.+.+..+ ++.+..+.+........ ........++|+|+||++|........+...++++|||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 999999999999876 45554544443221100 011112247899999999953222222345789999999999
Q ss_pred hhhh----------------------hheeeeccccHHHHHHHHHHhc-ccceeeeccccccccccEEEEEEcCchhHHH
Q 011667 258 HMLD----------------------EVLLFSATFNETVKNFVTRIVK-DYNQLFVKKEELSLESVKQYKVYCPDELAKV 314 (480)
Q Consensus 258 ~l~~----------------------~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 314 (480)
++.+ +++++|||++..+...+...+. ....+... .....++....... ..+.
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~~l~~~v~~~---~~~~ 224 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRPNIRYMLMEK---FKPL 224 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC--CCCCTTEEEEEEEC---SSHH
T ss_pred ccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC--CCCCCceEEEEEeC---CCHH
Confidence 9864 2689999999877665554443 22222221 12223333333322 2344
Q ss_pred HHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 011667 315 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 394 (480)
Q Consensus 315 ~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi 394 (480)
..+...+... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 225 ~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 225 DQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 4455534332 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 395 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 395 ~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
|++++||||++| .|++.|+||+||+||.|++|.|++|+.+.|
T Consensus 303 p~v~~VI~~~~p--------~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 303 PNVRFVVHFDIP--------RNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp TTCCEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred cCccEEEEECCC--------CCHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 999999999999 899999999999999999999999997543
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-49 Score=431.28 Aligned_cols=331 Identities=13% Similarity=0.193 Sum_probs=252.0
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
...|..+++++.+...+.. .++..|+|+|.++|+.++.| ++++++||||||||++|++|++..+.. +.++||++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~-~~~f~ltp~Q~~AI~~i~~g--~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~ 234 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEAR-TYPFTLDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTS 234 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSS-CCSSCCCHHHHHHHHHHTTT--CCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCcccCCCChhhhHHHHH-hCCCCCCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEc
Confidence 3467778888877777755 55556999999999999998 999999999999999999999988744 56899999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
||++|+.|+++.+..++.. +....++... ..+++|+|+||++|.+++..+...+.++++|||||||+
T Consensus 235 PtraLa~Q~~~~l~~~~~~----VglltGd~~~---------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFGD----VGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTSS----EEEECSSCBC---------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred CcHHHHHHHHHHHHHHhCC----ccEEeCcccc---------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 9999999999999998762 3344443322 12478999999999999998877789999999999999
Q ss_pred hhh------------------hheeeeccccHH--HHHHHHHHhcccceeeeccccccccccEEEEEEcCc---------
Q 011667 259 MLD------------------EVLLFSATFNET--VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD--------- 309 (480)
Q Consensus 259 l~~------------------~~~~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 309 (480)
+.+ ++++||||++.. +..++......+..+.... ..+..+.++++....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEEET
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEeecCCcceeeeecc
Confidence 865 389999999864 4455555555544433322 122222332221110
Q ss_pred h---------------------------------------------hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHH
Q 011667 310 E---------------------------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 344 (480)
Q Consensus 310 ~---------------------------------------------~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l 344 (480)
. ...+..+...+.. ...+++||||+++..|+.+
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHH
Confidence 0 1122222222222 2456999999999999999
Q ss_pred HHHHHhCCCc---------------------------------------EEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011667 345 HKALKDFGYE---------------------------------------VTTIMGATIQEERDKIVKEFKDGLTQVLIST 385 (480)
Q Consensus 345 ~~~L~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T 385 (480)
+..|...++. +..+||+|++.+|..+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 9998653222 7999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC--CceeEEEEeeCCccHHHHHHH
Q 011667 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMIIMEKI 452 (480)
Q Consensus 386 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~~i 452 (480)
+++++|||+|++++||+++.|+.+....+.|+.+|+||+|||||.| ..|.|++++.+..+...+..+
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 9999999999999999999887765544468889999999999999 689999999877555444433
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-49 Score=390.96 Aligned_cols=321 Identities=19% Similarity=0.236 Sum_probs=246.6
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (480)
+.+.+.+.+.+|| +|+|+|.++++.++.| +++++++|||||||++|++|++..+. .++++|||+||++|+.|++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTT--CCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHH
Confidence 3455566665677 6999999999999999 89999999999999999999888763 3678999999999999999
Q ss_pred HHHHHHhcccCceeeEeecCCCCCc-ccccCCC-CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh------
Q 011667 189 EVLRKMGKHTGITSECAVPTDSTNY-VPISKRP-PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML------ 260 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~------ 260 (480)
+.+..++. .++.+...+++..... ....... ...++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999887 7777777776654311 0011111 11379999999999988874 566789999999999642
Q ss_pred -----------------------------------hhheeeecc-ccHHHHHH-HHHHhcccceeeeccccccccccEEE
Q 011667 261 -----------------------------------DEVLLFSAT-FNETVKNF-VTRIVKDYNQLFVKKEELSLESVKQY 303 (480)
Q Consensus 261 -----------------------------------~~~~~~SAT-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (480)
.++++|||| .+..+... ....+. +.+.........+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhe
Confidence 147899999 56544322 222222 2333334445567777
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
+..... ...+...+.. ..+++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 235 ~~~~~~----~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 235 RISSRS----KEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EESSCC----HHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eeccCH----HHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 666532 2333343333 348999999999999999999999999998 99995 344 999999999999
Q ss_pred EE----ccccccCCCCCC-CCEEEEccCCCCCCCCCCCCcccccccccccccCC----CceeEEEEeeCCccHHHHHHHH
Q 011667 383 IS----TDVLARGFDQQQ-VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGDDMIIMEKIE 453 (480)
Q Consensus 383 v~----T~~~~~Gldi~~-v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g----~~g~~~~l~~~~~~~~~~~~i~ 453 (480)
|| |+++++|+|+|+ +++||+|++|.. .++..|+||+||+||.| +.|.+++|+ ++...+..++
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~ 372 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSG------PDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLK 372 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTT------TCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCC------CCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHH
Confidence 99 999999999999 999999999931 26899999999999987 589999999 4566788888
Q ss_pred HHhC--CcceecC
Q 011667 454 RYFD--IKVTEVR 464 (480)
Q Consensus 454 ~~l~--~~~~~~~ 464 (480)
++++ ..+...+
T Consensus 373 ~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 373 TRLLLIAEEEIIE 385 (414)
T ss_dssp HHHHHHHCCCEEE
T ss_pred HHhcccccccccc
Confidence 8888 5555444
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-45 Score=388.14 Aligned_cols=335 Identities=18% Similarity=0.237 Sum_probs=250.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhccc-ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
..+|+++++++.+.+.+.. +||..|+|+|.++++. ++.+ ++++++||||||||++|.++++..+.. .+.+++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEE
Confidence 4679999999999999986 9999999999999999 6666 999999999999999999999987653 25699999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+|+++|+.|+++.++.+. ..++.+...+|+....... ...++|+|+||++|..++......++++++||+||||
T Consensus 82 ~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~-----~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW-----LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp CSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG-----GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred eCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh-----cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999996443 3577776666654333211 1258999999999999998876668999999999999
Q ss_pred hhhh-----------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEE------------EEEcC
Q 011667 258 HMLD-----------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY------------KVYCP 308 (480)
Q Consensus 258 ~l~~-----------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 308 (480)
++.+ +++++|||+++. .. +..++..+ .+..... +..+... .....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~-~~-~~~~l~~~-~~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAKRRNLLALSATISNY-KQ-IAKWLGAE-PVATNWR---PVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTH-HH-HHHHHTCE-EEECCCC---SSCEEEEEEEECSSTTEEEEEETT
T ss_pred hcCCcccchHHHHHHHhcccCcEEEEcCCCCCH-HH-HHHHhCCC-ccCCCCC---CCCceEEEEecCCcccceeeecCc
Confidence 9764 379999999752 22 33344321 1111111 1111111 11111
Q ss_pred -------chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC-----------------------------
Q 011667 309 -------DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG----------------------------- 352 (480)
Q Consensus 309 -------~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~----------------------------- 352 (480)
........ +.+.....+++||||+++++++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 230 NTTKKVHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp SCEEEEESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred chhhhcccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 01223333 33333467899999999999999999997642
Q ss_pred -------CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc-------CCCCCCCCCC
Q 011667 353 -------YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD-------PPVKHGKHLE 414 (480)
Q Consensus 353 -------~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~-------~p~~~~~~~~ 414 (480)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~-------- 377 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDE-------- 377 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------------
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCc--------
Confidence 24899999999999999999999999999999999999999999999999 88 55
Q ss_pred CCcccccccccccccCC--CceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 415 PDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 415 ~s~~~y~qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
.|..+|.||+|||||.| ..|.|+.++++.++ ....+++++....+.+.
T Consensus 378 ~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~--~~~~~~~~l~~~~e~~~ 427 (715)
T 2va8_A 378 IPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED--VDRVFKKYVLSDVEPIE 427 (715)
T ss_dssp -CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG--HHHHHHHTTSSCCCCCC
T ss_pred CCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH--HHHHHHHHHcCCCCCce
Confidence 78999999999999988 47999999876543 22334555554444443
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.6e-46 Score=385.37 Aligned_cols=305 Identities=19% Similarity=0.234 Sum_probs=235.1
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.+|| .|+|+|..++|.++.| + |+.++||+|||++|++|++.... .+..++||+||++||.|.++++..++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G--~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDG--N--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTT--S--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCC--C--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 8999999999999998 6 99999999999999999984322 2558999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhh-hh-------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHML-DE------- 262 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~------- 262 (480)
+++++.+++++.+... .....+++|+|+||++| ++++..+ .+.++.+.++||||||+|+ +.
T Consensus 151 lgl~v~~i~gg~~~~~----r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDE----KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp TTCCEEECCTTSCHHH----HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred cCCeEEEEeCCCCHHH----HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 9999988887754322 11223589999999999 6665432 3567899999999999987 21
Q ss_pred -----------------------------------he-----------------eeeccccH---HHHHHHH--HHhc-c
Q 011667 263 -----------------------------------VL-----------------LFSATFNE---TVKNFVT--RIVK-D 284 (480)
Q Consensus 263 -----------------------------------~~-----------------~~SAT~~~---~~~~~~~--~~~~-~ 284 (480)
++ +||||++. .+...+. .++. +
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 12 88999774 3333221 1221 1
Q ss_pred ccee------------------------------------eeccccccccccE---------------------------
Q 011667 285 YNQL------------------------------------FVKKEELSLESVK--------------------------- 301 (480)
Q Consensus 285 ~~~~------------------------------------~~~~~~~~~~~~~--------------------------- 301 (480)
...+ .+.....+...+.
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 1110 0000000000000
Q ss_pred -------------------E-EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCC
Q 011667 302 -------------------Q-YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 361 (480)
Q Consensus 302 -------------------~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~ 361 (480)
+ .+++ .....|...+...+........++||||+|++.++.++..|...|+.+..+||+
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~ 465 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS
T ss_pred HhCCceEEecCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC
Confidence 0 1222 245677777777665544467799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC--------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc
Q 011667 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 433 (480)
Q Consensus 362 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~--------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~ 433 (480)
+.+.+|..+.+.|+.| .|+||||+++||+||+ ++.+||+|+.| .|...|+||+|||||+|.+
T Consensus 466 ~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p--------~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 466 NHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH--------ESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCC
T ss_pred ccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC--------CCHHHHHhhcCccccCCCC
Confidence 9888887666666655 6999999999999999 88899999999 8999999999999999999
Q ss_pred eeEEEEeeCCcc
Q 011667 434 GVVFNLLMDGDD 445 (480)
Q Consensus 434 g~~~~l~~~~~~ 445 (480)
|.++.|++..|+
T Consensus 536 G~s~~~vs~eD~ 547 (844)
T 1tf5_A 536 GITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEEETTSS
T ss_pred CeEEEEecHHHH
Confidence 999999997765
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.8e-46 Score=385.45 Aligned_cols=337 Identities=18% Similarity=0.207 Sum_probs=223.3
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC--CCCeEEEEecCHHHHHHHHHHHHHHhcccCc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
+|+|+|.++++.++.| +++++++|||+|||++|++|++..+.... .++++|||+||++|+.|+++.+.+++...++
T Consensus 4 ~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCC--CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 5999999999999998 99999999999999999999998876543 2668999999999999999999999988888
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhhhh------------------
Q 011667 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD------------------ 261 (480)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~------------------ 261 (480)
.+...+|+...... ......+++|+|+||++|..++..+.+ .+.++++||+||||++.+
T Consensus 82 ~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 82 NIASISGATSDSVS--VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CEEEECTTTGGGSC--HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred EEEEEcCCCcchhh--HHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 88777766633221 111122478999999999999988776 788999999999999754
Q ss_pred ------hheeeeccccHH----H---HHHHH---HHhcccceeeeccc------cccccccEEEEEEcC-----------
Q 011667 262 ------EVLLFSATFNET----V---KNFVT---RIVKDYNQLFVKKE------ELSLESVKQYKVYCP----------- 308 (480)
Q Consensus 262 ------~~~~~SAT~~~~----~---~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------- 308 (480)
+++++|||+... + ...+. ..+.. ..+..... ......... ...+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA-SVIATVRDNVAELEQVVYKPQKI-SRKVASRTSNTFKCII 237 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC-SEEECCCSCHHHHHTTCCCCCEE-EEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC-eeeeccccCHHHHHhhcCCCceE-EEEecCcccChHHHHH
Confidence 389999998531 1 11111 11110 11111000 000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 011667 309 -------------------------------------------------------------------------------- 308 (480)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (480)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------chhHHHHHHHHHHHHhc--ccCCcEEEEeC
Q 011667 309 --------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTIIFVR 336 (480)
Q Consensus 309 --------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lVf~~ 336 (480)
....|...+.+.+.... ...+++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 01223444444333332 24589999999
Q ss_pred chhhHHHHHHHHHhCC------------CcEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 337 TKNSASALHKALKDFG------------YEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 337 s~~~~~~l~~~L~~~~------------~~~~~l~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
++..++.++..|...+ .....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 9999999999998763 344455669999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHH----HHHhCCcceecC-CCHHHHHHHHHH
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI----ERYFDIKVTEVR-NSDEDFKAALKA 476 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i----~~~l~~~~~~~~-~~~~~~~~~~~~ 476 (480)
|+| .++..|+||+|| ||. +.|.+++|+++.+.. ....+ ++++...+.++. .+..++...+++
T Consensus 478 d~p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~ 544 (555)
T 3tbk_A 478 EYV--------GNVIKMIQTRGR-GRA-RDSKCFLLTSSADVI-EKEKANMIKEKIMNESILRLQTWDEMKFGKTVHR 544 (555)
T ss_dssp SCC--------SSCCCEECSSCC-CTT-TSCEEEEEESCHHHH-HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCC--------CCHHHHHHhcCc-CcC-CCceEEEEEcCCCHH-HHHHHhhHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 999 678899999999 998 899999999865432 22334 455555555554 455555555443
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.5e-46 Score=394.14 Aligned_cols=341 Identities=20% Similarity=0.237 Sum_probs=215.9
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC--CCCeEEEEecCHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~ 191 (480)
++.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.... .+.++|||+||++|+.|+.+.+
T Consensus 5 ~l~~-~g~~~lr~~Q~~~i~~~l~g--~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 5 DTNL-YSPFKPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp --CT-TC--CCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccc-cCCCCccHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 4443 89999999999999999998 99999999999999999999998775432 2368999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhh-----------
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHM----------- 259 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l----------- 259 (480)
.+++...++.+..++|+...... ......+++|+|+||++|.+++..+.+ .+.++++|||||||++
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVP--VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSC--HHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHhccCCceEEEEeCCcccccc--HHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99988778887777766543321 111112479999999999999988766 6889999999999994
Q ss_pred --hh-----------hheeeecccc-------HHHHHHHHHHhc----------------------ccceeeeccccc--
Q 011667 260 --LD-----------EVLLFSATFN-------ETVKNFVTRIVK----------------------DYNQLFVKKEEL-- 295 (480)
Q Consensus 260 --~~-----------~~~~~SAT~~-------~~~~~~~~~~~~----------------------~~~~~~~~~~~~-- 295 (480)
+. +++++|||+. ......+...+. .|..........
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22 3789999986 221111111110 010000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011667 296 -------------------------------------------------------------------------------- 295 (480)
Q Consensus 296 -------------------------------------------------------------------------------- 295 (480)
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------cccccEEEEEE---------------cCchhHHHHHHHHHHHHhc--ccCC
Q 011667 296 -----------------------------SLESVKQYKVY---------------CPDELAKVMVIRDRIFELG--EKMG 329 (480)
Q Consensus 296 -----------------------------~~~~~~~~~~~---------------~~~~~~k~~~l~~~l~~~~--~~~~ 329 (480)
....+.+.+.. ......+...+...+.... ...+
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 00000000000 0012234555555444332 2567
Q ss_pred cEEEEeCchhhHHHHHHHHHhCC----CcEEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCC
Q 011667 330 QTIIFVRTKNSASALHKALKDFG----YEVTTI--------MGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQ 396 (480)
Q Consensus 330 ~~lVf~~s~~~~~~l~~~L~~~~----~~~~~l--------~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~ 396 (480)
++||||+++..++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 99999999999999999999987 888888 559999999999999998 99999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHH----HHHhCCcceecC-CCHHHH
Q 011667 397 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI----ERYFDIKVTEVR-NSDEDF 470 (480)
Q Consensus 397 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i----~~~l~~~~~~~~-~~~~~~ 470 (480)
+++||+||+| .++..|+||+|| ||. +.|.|+.|++.. +......+ +++++..+.+++ ...+.+
T Consensus 480 v~~VI~~d~p--------~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 547 (696)
T 2ykg_A 480 CNLVILYEYV--------GNVIKMIQTRGR-GRA-RGSKCFLLTSNA-GVIEKEQINMYKEKMMNDSILRLQTWDEAVF 547 (696)
T ss_dssp CSEEEEESCC----------CCCC-----------CCCEEEEEESCH-HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCEEEEeCCC--------CCHHHHHHhhcc-CcC-CCceEEEEecCC-CHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 9999999999 789999999999 998 789999888754 33333444 667777777776 345555
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.3e-45 Score=389.21 Aligned_cols=332 Identities=18% Similarity=0.200 Sum_probs=253.2
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhccc-ccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+|+++++++.+.+.+.. +||..|+|+|.++++. ++.+ ++++++||||||||++|.+|++..+... +.+++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcC
Confidence 68999999999999986 9999999999999998 7777 9999999999999999999999876532 569999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
+++|+.|+++.++++.. .++.+...+|....... ....++|+|+||++|..++......++++++||+||||++
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999975543 47777777664433221 1235899999999999998886666889999999999987
Q ss_pred hh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEE------EcCc----hh
Q 011667 260 LD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV------YCPD----EL 311 (480)
Q Consensus 260 ~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~ 311 (480)
.+ +++++|||+++. .. +..++... .+... ..+..+...+. .... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~-~~~~l~~~-~~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EE-LAEWLNAE-LIVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HH-HHHHTTEE-EEECC---CCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HH-HHHHhCCc-ccCCC---CCCCcceEEEEeCCeeeccccchhhhh
Confidence 64 379999999752 22 33344321 11111 11111111111 1110 11
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC---------------------------------CCcEEEe
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF---------------------------------GYEVTTI 358 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~---------------------------------~~~~~~l 358 (480)
.....+ .+.....+++||||++++.++.++..|... ...+..+
T Consensus 225 ~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 225 SWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp STTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 222222 222336789999999999999999998653 1249999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc----CCCCCCCCCCCCcccccccccccccC
Q 011667 359 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD----PPVKHGKHLEPDCEVYLHRIGRAGRF 430 (480)
Q Consensus 359 ~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~----~p~~~~~~~~~s~~~y~qr~GR~gR~ 430 (480)
||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .| .|..+|.||+||+||.
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~--------~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER--------IPIIEVHQMLGRAGRP 372 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEE--------CCHHHHHHHHTTBCCT
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCcc--------CCHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999998 76 34 7899999999999998
Q ss_pred C--CceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 431 G--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 431 g--~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
| ..|.|++++++.+ ....+++++....+.+.
T Consensus 373 g~~~~G~~~~l~~~~~---~~~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDD---PREVMNHYIFGKPEKLF 405 (720)
T ss_dssp TTCSEEEEEEECSSSC---HHHHHHHHTTSCCCCCC
T ss_pred CCCCCceEEEEecCcc---HHHHHHHHhcCCCCCcE
Confidence 8 5799999998654 22335567766665555
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.9e-46 Score=384.11 Aligned_cols=308 Identities=16% Similarity=0.203 Sum_probs=186.3
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCC--CCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~--~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
+..+|+|+|.++++.++.| +++++++|||||||++|++|++..+..... ++++|||+||++|+.||++.+.+++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4457999999999999998 999999999999999999999988765332 668999999999999999999999988
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhhhh---------------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD--------------- 261 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~--------------- 261 (480)
.++.+..++++...... ......+++|+|+||++|.+++..+.+ .+.++++||+||||++.+
T Consensus 82 ~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GTCCEEECCCC-----C--HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchh--HHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 88887777666533321 111122478999999999999988777 789999999999998763
Q ss_pred --------hheeeeccccH-----------HHHHHHHHHhcccceeeeccc------cccccccEEEEEEcC--------
Q 011667 262 --------EVLLFSATFNE-----------TVKNFVTRIVKDYNQLFVKKE------ELSLESVKQYKVYCP-------- 308 (480)
Q Consensus 262 --------~~~~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------- 308 (480)
++++||||++. .+..+...+ . ...+..... .......... ....
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 236 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQELQRFMNKPEIDV-RLVKRRIHNPFA 236 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-T-CSEEECCCTTHHHHHHHTCCCCEEE-EECCCCSCCHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-C-CeEecchhcchHHHHhcCCCCceEE-EEcCCCcCChHH
Confidence 38999999842 111111111 1 000110000 0000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 011667 309 -------------------------------------------------------------------------------- 308 (480)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (480)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 316 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------chhHHHHHHHHHHHHhc--ccCCcEEEE
Q 011667 309 ----------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTIIF 334 (480)
Q Consensus 309 ----------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lVf 334 (480)
....|+..+.+.+.... ....++|||
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF 396 (556)
T 4a2p_A 317 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 396 (556)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEE
Confidence 01223444444343332 457899999
Q ss_pred eCchhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEE
Q 011667 335 VRTKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIV 401 (480)
Q Consensus 335 ~~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~v~~Vi 401 (480)
|+++..++.++..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI 476 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999775 4555667888999999999999999 9999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 402 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 402 ~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
+||+| .++..|+||+|| ||. ++|.+++|++..+
T Consensus 477 ~~d~p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 477 LYEYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp EETCC--------SCHHHHHHC----------CCEEEEESCHH
T ss_pred EeCCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 99999 789999999999 998 7999999998654
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-45 Score=389.36 Aligned_cols=331 Identities=18% Similarity=0.204 Sum_probs=247.7
Q ss_pred CcccCC--CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 101 TFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 101 ~f~~~~--l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
+|++++ +++.+.+.+.. +||..|+|+|.++++.++.+ ++++++||||||||++|.+|++..+.. +.+++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSG--KNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTC--SCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCC--CcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEe
Confidence 688888 99999999976 99999999999999999888 999999999999999999999987653 56899999
Q ss_pred cCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
|+++|+.|+++.++.+. ..++.+...+|+...... ....++|+|+||++|..++......++++++||+||||+
T Consensus 76 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp SSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred CcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 99999999999996544 346777666665433221 123689999999999999988666688999999999999
Q ss_pred hhh---------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEE-----cCch--
Q 011667 259 MLD---------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-----CPDE-- 310 (480)
Q Consensus 259 l~~---------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 310 (480)
+.+ +++++|||+++ ... +..++..+ .+..... +..+...+.. ..+.
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~-~~~~l~~~-~~~~~~r---~~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTE-IAEWLDAD-YYVSDWR---PVPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHH-HHHHTTCE-EEECCCC---SSCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHH-HHHHhCCC-cccCCCC---CccceEEEeeCCeeeccCcch
Confidence 764 37999999985 233 33344322 1111111 1111111110 0010
Q ss_pred -----hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC------------------------------CCcE
Q 011667 311 -----LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------------------------------GYEV 355 (480)
Q Consensus 311 -----~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~------------------------------~~~~ 355 (480)
......+. +.....+++||||+++++++.++..|... +..+
T Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 224 STSRRVKFEELVE----ECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEECCHHHHHH----HHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHH----HHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 01333332 23346789999999999999999988642 2358
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc---CCCCCCCCCCCCcccccccccccc
Q 011667 356 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD---PPVKHGKHLEPDCEVYLHRIGRAG 428 (480)
Q Consensus 356 ~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~---~p~~~~~~~~~s~~~y~qr~GR~g 428 (480)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .| .|..+|.||+||+|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~--------~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR--------IKVSEYKQMAGRAG 371 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE--------CCHHHHHHHHTTBS
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc--------CCHHHHHHHhhhcC
Confidence 88999999999999999999999999999999999999999999999 66 45 78999999999999
Q ss_pred cCC--CceeEEEEeeCCccHHHHHHHHHHhCCcceecC
Q 011667 429 RFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 464 (480)
Q Consensus 429 R~g--~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 464 (480)
|.| ..|.|+.++++.+ ....+++++....+.+.
T Consensus 372 R~g~~~~G~~~~l~~~~~---~~~~~~~~l~~~~e~~~ 406 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRD---REIAVKRYIFGEPERIT 406 (702)
T ss_dssp CTTTCSCEEEEEECCGGG---HHHHHHTTTSSCCCCCC
T ss_pred CCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCce
Confidence 988 5899999987654 22223445544444333
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.9e-45 Score=398.71 Aligned_cols=319 Identities=19% Similarity=0.224 Sum_probs=242.3
Q ss_pred HHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 111 l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
+.+.+...+|| +|+|+|.+++|.++.| +|++++||||||||++|+++++..+. .++++|||+||++||.|+++.
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g--~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTT--CCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcC--CCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHH
Confidence 33445455788 5999999999999999 99999999999999999898888773 367899999999999999999
Q ss_pred HHHHhcccCceeeEeecCCCCCcc-cccCCC-CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhh--------
Q 011667 191 LRKMGKHTGITSECAVPTDSTNYV-PISKRP-PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML-------- 260 (480)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~-------- 260 (480)
+.+++ ..++.+..++++...... ...... ...++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99977 677888888777654211 111111 12379999999999988874 667889999999998532
Q ss_pred --h-------------------------------hheeeecc-ccHHHHHHHHHHhcccceeeeccccccccccEEEEEE
Q 011667 261 --D-------------------------------EVLLFSAT-FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 306 (480)
Q Consensus 261 --~-------------------------------~~~~~SAT-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (480)
+ ++++|||| .+..+.... +..+..+.+.........+.+.+..
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~---~~~~l~i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL---FRDLLNFTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH---HHHHTCCCCCBCCCCCCCEEEEEES
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH---hhcceeEEeccCCCCcCCceeEEEe
Confidence 2 57999999 565543222 2222224444455566677787776
Q ss_pred cCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHhcCCCcEEEE-
Q 011667 307 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVLIS- 384 (480)
Q Consensus 307 ~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~iLv~- 384 (480)
+. +...+...+.. ..+++||||++++.++.++..|...++.+. .+||. |.+ ++.|++|+.+||||
T Consensus 295 ~~----k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 295 SR----SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp CC----CHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEE
T ss_pred cC----HHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEe
Confidence 63 23333333333 248999999999999999999999999998 99992 555 99999999999999
Q ss_pred ---ccccccCCCCCC-CCEEEEccCCCCCC--------------------------------------------------
Q 011667 385 ---TDVLARGFDQQQ-VNLIVNYDPPVKHG-------------------------------------------------- 410 (480)
Q Consensus 385 ---T~~~~~Gldi~~-v~~Vi~~~~p~~~~-------------------------------------------------- 410 (480)
|++++||||+|+ |++|||||+|....
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i 441 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKV 441 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999 99999999995000
Q ss_pred --------------CCCCCCcccccccccccccCCC----ceeEEEEeeCCccHHHHHHHHHHhC
Q 011667 411 --------------KHLEPDCEVYLHRIGRAGRFGR----KGVVFNLLMDGDDMIIMEKIERYFD 457 (480)
Q Consensus 411 --------------~~~~~s~~~y~qr~GR~gR~g~----~g~~~~l~~~~~~~~~~~~i~~~l~ 457 (480)
.....++.+|+||+|||||.|. .|.+++|+ ++...++.+.+.++
T Consensus 442 ~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 442 KEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred hhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 0001167789999999999653 56777766 46667777877774
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.8e-45 Score=400.63 Aligned_cols=321 Identities=20% Similarity=0.248 Sum_probs=244.1
Q ss_pred HHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 111 l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
+.+.+.+.+||. | |+|.++|+.++.| +|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g--~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRK--ESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTT--CCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhC--CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHH
Confidence 445666668999 9 9999999999999 999999999999998 88998887654 367899999999999999999
Q ss_pred HHHHhcccCc----eeeEeecCCCCCccc-ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----
Q 011667 191 LRKMGKHTGI----TSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---- 261 (480)
Q Consensus 191 ~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~---- 261 (480)
+..++...++ .+.+++|+....... ....... ++|+|+||++|.+++.+ +.++++||+||||+|++
T Consensus 119 l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~~~~ 193 (1054)
T 1gku_B 119 IRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKN 193 (1054)
T ss_dssp HHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTSTHH
T ss_pred HHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhcccc
Confidence 9999988777 777777766543311 1111222 79999999999998775 66899999999999875
Q ss_pred -----------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHH
Q 011667 262 -----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 318 (480)
Q Consensus 262 -----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 318 (480)
++++||||++.. ..+...++..+..+.+.........+.+.+... .+...+.
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~----~k~~~L~ 268 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVND----ESISTLS 268 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESC----CCTTTTH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEech----hHHHHHH
Confidence 378999999876 544445555555555555555556677766622 2233333
Q ss_pred HHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEE----ccccccCCCC
Q 011667 319 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS----TDVLARGFDQ 394 (480)
Q Consensus 319 ~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~----T~~~~~Gldi 394 (480)
..+.. ..+++||||++++.++.++..|... +.+..+||++. .+++.|++|+.+|||| |+++++|||+
T Consensus 269 ~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi 339 (1054)
T 1gku_B 269 SILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339 (1054)
T ss_dssp HHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCC
T ss_pred HHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecccc
Confidence 32222 2578999999999999999999888 99999999983 7889999999999999 9999999999
Q ss_pred CCC-CEEEEccCCC----------------------------------------------------CCCCC---------
Q 011667 395 QQV-NLIVNYDPPV----------------------------------------------------KHGKH--------- 412 (480)
Q Consensus 395 ~~v-~~Vi~~~~p~----------------------------------------------------~~~~~--------- 412 (480)
|+| ++||+||+|. .+...
T Consensus 340 p~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 419 (1054)
T 1gku_B 340 PERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREG 419 (1054)
T ss_dssp TTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETT
T ss_pred CCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeec
Confidence 995 9999999991 00000
Q ss_pred --CCCCcccccccccccccCCCce--eEEEEeeCCccHHHHHHHHHHhCC
Q 011667 413 --LEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGDDMIIMEKIERYFDI 458 (480)
Q Consensus 413 --~~~s~~~y~qr~GR~gR~g~~g--~~~~l~~~~~~~~~~~~i~~~l~~ 458 (480)
...+..+|+||+|||||.|..| .+++|+... +...+..+++.++.
T Consensus 420 ~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 420 EVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp EEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred ceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 0037889999999999987765 477777654 56677888887763
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-44 Score=386.91 Aligned_cols=312 Identities=16% Similarity=0.192 Sum_probs=192.7
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC--CCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
+|+..|+|+|.++++.++.| +++++++|||||||++|++|++..+.... .++++|||+||++|+.|++..+.+++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHHHhC--CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 57889999999999999998 99999999999999999999998876543 267899999999999999999999998
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhhhh--------------
Q 011667 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------- 261 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~-------------- 261 (480)
..++.+..++|+...... ......+++|+|+||++|.+++..+.+ .+.++++|||||||++..
T Consensus 322 ~~~~~v~~~~g~~~~~~~--~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp GGTCCEEEECCC-----C--HHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhh--HHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 888888777776643321 111122578999999999999988776 788999999999998764
Q ss_pred ---------hheeeeccccH-----------HHHHHHHHH------------------hcccceeeeccccccccc----
Q 011667 262 ---------EVLLFSATFNE-----------TVKNFVTRI------------------VKDYNQLFVKKEELSLES---- 299 (480)
Q Consensus 262 ---------~~~~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---- 299 (480)
+++++|||+.. .+..+...+ +..+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 28999999842 221111111 111111100000000000
Q ss_pred --------------------cEEE-EEEc---------------------C-----------------------------
Q 011667 300 --------------------VKQY-KVYC---------------------P----------------------------- 308 (480)
Q Consensus 300 --------------------~~~~-~~~~---------------------~----------------------------- 308 (480)
+... .... .
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 0000 0
Q ss_pred --------------------------------------------------chhHHHHHHHHHHHHhc--ccCCcEEEEeC
Q 011667 309 --------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTIIFVR 336 (480)
Q Consensus 309 --------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lVf~~ 336 (480)
....|+..+...+.... ....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 01223333444333321 35689999999
Q ss_pred chhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 337 TKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 337 s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
++..++.++..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999763 5566778899999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
|+| .|+..|+||+|| ||. ++|.|++|++..+
T Consensus 720 d~p--------~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 720 EYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp SCC--------SCHHHHHTC---------CCCEEEEECCHH
T ss_pred CCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 999 789999999999 998 8999999998654
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4e-44 Score=366.51 Aligned_cols=305 Identities=20% Similarity=0.194 Sum_probs=227.6
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.+|. .|+|+|..++|.++.| + ++.++||+|||++|++|++.... .+.+++||+||++||.|.++++..++..
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G--~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNER--C--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSS--E--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCC--e--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3575 7999999999999998 5 99999999999999999985443 2568999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhh-hh-------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHML-DE------- 262 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~------- 262 (480)
+++++.+++|+.+... .....+++|+|+||++| ++++..+ .+.++++.++|+||||+|+ +.
T Consensus 142 lgl~v~~i~GG~~~~~----r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA----KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp TTCCEEECCTTCCHHH----HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred cCCeEEEEeCCCCHHH----HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 9999988888764321 11223589999999999 7887654 2567899999999999988 21
Q ss_pred ----------------------------------------------h------------------------eeeeccccH
Q 011667 263 ----------------------------------------------V------------------------LLFSATFNE 272 (480)
Q Consensus 263 ----------------------------------------------~------------------------~~~SAT~~~ 272 (480)
+ .+||||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 0 166776543
Q ss_pred ---HHHHHH--HHHhc--------c-----------------------------cceeeeccccccccccEE--------
Q 011667 273 ---TVKNFV--TRIVK--------D-----------------------------YNQLFVKKEELSLESVKQ-------- 302 (480)
Q Consensus 273 ---~~~~~~--~~~~~--------~-----------------------------~~~~~~~~~~~~~~~~~~-------- 302 (480)
.+...+ ..++. + +..+.+.....+...+.+
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~ 377 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYE 377 (853)
T ss_dssp -----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhh
Confidence 111100 00000 0 001111111111111111
Q ss_pred ---------------------------------------EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHH
Q 011667 303 ---------------------------------------YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 343 (480)
Q Consensus 303 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~ 343 (480)
.+++ .....|...+...+......+.++||||+|++.++.
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~-~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVY-MTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEE-eCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 1122 345678888877665555567899999999999999
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC--------------------------
Q 011667 344 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV-------------------------- 397 (480)
Q Consensus 344 l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v-------------------------- 397 (480)
++..|...|+++..+||.+.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999888888888888888 699999999999999974
Q ss_pred -----------CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 398 -----------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 398 -----------~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
.|||+|+.| .|...|.||+|||||.|.+|.++.|++..|+
T Consensus 535 ~~~~~V~~~GGl~VI~te~p--------es~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERH--------ESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhHHHhcCCcEEEEccCC--------CCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 699999999 8999999999999999999999999987664
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-43 Score=376.52 Aligned_cols=304 Identities=15% Similarity=0.257 Sum_probs=233.2
Q ss_pred hcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 118 ~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.++|. |+|+|.++++.+++| ++++++||||||||++|.++++..+.. +.++||++||++|+.|+++.+.+++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g--~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHT--CEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred hCCCC-CCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 47886 999999999999998 999999999999999999999887743 56999999999999999999998875
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----------------
Q 011667 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD---------------- 261 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~---------------- 261 (480)
.+....|+...+ ..++|+|+||++|..++.+....+.++++|||||||++.+
T Consensus 155 ---~vglltGd~~~~---------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN---------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp ---CEEEECSSCEEC---------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred ---CEEEEeCCCccC---------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 333444433221 1468999999999999988777889999999999999865
Q ss_pred --hheeeeccccHHH--HHHHHHHhcccceeeeccccccccccEEEEEEcC---------ch------------------
Q 011667 262 --EVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP---------DE------------------ 310 (480)
Q Consensus 262 --~~~~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------------------ 310 (480)
+++++|||+++.. ..++......+..+.... ..+..+.++++... ..
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 3799999998643 233443444343333322 22223333333211 00
Q ss_pred ---------------------------hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC----------
Q 011667 311 ---------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY---------- 353 (480)
Q Consensus 311 ---------------------------~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------- 353 (480)
...+..+...+.. ....++||||+++..|+.++..|...++
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 0111122221211 1345899999999999999999876543
Q ss_pred -----------------------------cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE--
Q 011667 354 -----------------------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-- 402 (480)
Q Consensus 354 -----------------------------~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~-- 402 (480)
.+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCC
Confidence 2789999999999999999999999999999999999999999999999
Q ss_pred --ccC----CCCCCCCCCCCcccccccccccccCCC--ceeEEEEeeCCccHHHHHHH
Q 011667 403 --YDP----PVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIMEKI 452 (480)
Q Consensus 403 --~~~----p~~~~~~~~~s~~~y~qr~GR~gR~g~--~g~~~~l~~~~~~~~~~~~i 452 (480)
||. | .++.+|+||+||+||.|. .|.|++|+.+..+...+..+
T Consensus 459 ~kfd~~~~rp--------~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 459 RKWDGQQFRW--------VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECSSCEEE--------CCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cccCCcCCcc--------CCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 988 6 689999999999999996 59999999876454444333
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-43 Score=380.79 Aligned_cols=312 Identities=16% Similarity=0.188 Sum_probs=192.9
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCC--CCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~--~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.|+..|+|+|.++++.++.| +++++++|||+|||++|++|++..+..... +.++|||+||++|+.|++..+.+++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g--~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999998 999999999999999999999988865432 66899999999999999999999988
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcc-ccCceEEEEEcCchhhhh--------------
Q 011667 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLD-------------- 261 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~-------------- 261 (480)
..++.+..++|+...... ......+++|+|+||++|.+++..+.+ .+.++++||+||||++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TTTCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhH--HHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 778888777776643321 111112478999999999999988766 688999999999998754
Q ss_pred ---------hheeeeccccH-----------HHHHHHHH------------------Hhcccceeeecccccccc-----
Q 011667 262 ---------EVLLFSATFNE-----------TVKNFVTR------------------IVKDYNQLFVKKEELSLE----- 298 (480)
Q Consensus 262 ---------~~~~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~----- 298 (480)
++++||||+.. .+..+... ++..+.............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 28999999841 11111111 111111111000000000
Q ss_pred -------------------ccEEE-EEEc---------------------C-----------------------------
Q 011667 299 -------------------SVKQY-KVYC---------------------P----------------------------- 308 (480)
Q Consensus 299 -------------------~~~~~-~~~~---------------------~----------------------------- 308 (480)
.+... .... +
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000 0000 0
Q ss_pred --------------------------------------------------chhHHHHHHHHHHHHhc--ccCCcEEEEeC
Q 011667 309 --------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTIIFVR 336 (480)
Q Consensus 309 --------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lVf~~ 336 (480)
....|+..+.+.+.... ....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 01123333444333322 35689999999
Q ss_pred chhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 337 TKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 337 s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
++..++.++..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999876 5556677899999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
|+| .|+..|+||+|| ||. +.|.++.|++..+
T Consensus 720 D~p--------~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 720 EYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp SCC--------SCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCC--------CCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 999 789999999999 998 7899999987643
No 33
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.6e-43 Score=357.33 Aligned_cols=309 Identities=20% Similarity=0.232 Sum_probs=237.4
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+....+|+ .|+++|..++|.++.| + |+.++||+|||++|++|++..... +..++||+||++||.|.++++..
T Consensus 103 a~~R~lG~-rP~~VQ~~~ip~Ll~G--~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 103 AAWRVLDQ-RPFDVQVMGAAALHLG--N--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTT--E--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHHHHhHhcC--C--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHH
Confidence 33344798 8999999999999998 5 999999999999999999643322 45799999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcC------ccccCceEEEEEcCchhhhh-h---
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLD-E--- 262 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~-~--- 262 (480)
++..+++++.+++++..... .....+++|+|+||++| ++++..+ .+.++.+.++||||||+|+. .
T Consensus 175 l~~~lGLsv~~i~gg~~~~~----r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDE----RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHH----HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred HHhhcCCeEEEEeCCCCHHH----HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 99999999988887764321 11223589999999999 7777653 35678899999999999982 0
Q ss_pred ---------------------------------------he-----------------eeeccccH---HHHHHHH--HH
Q 011667 263 ---------------------------------------VL-----------------LFSATFNE---TVKNFVT--RI 281 (480)
Q Consensus 263 ---------------------------------------~~-----------------~~SAT~~~---~~~~~~~--~~ 281 (480)
++ +||||.+. .+...+. .+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 22 88999764 3333221 12
Q ss_pred hc-cc-------ceeee-----------------------------ccccccccccE-----------------------
Q 011667 282 VK-DY-------NQLFV-----------------------------KKEELSLESVK----------------------- 301 (480)
Q Consensus 282 ~~-~~-------~~~~~-----------------------------~~~~~~~~~~~----------------------- 301 (480)
+. +. ..+.+ .....+...+.
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 21 10 00000 00000111111
Q ss_pred -----------------------E-EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEE
Q 011667 302 -----------------------Q-YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 357 (480)
Q Consensus 302 -----------------------~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~ 357 (480)
+ .+++ .....|...+...+......+.++||||+|++.++.++..|...|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 0 1222 24566887777766665556779999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC----------------------------------------
Q 011667 358 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV---------------------------------------- 397 (480)
Q Consensus 358 l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v---------------------------------------- 397 (480)
+||.+.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888788888877 699999999999999975
Q ss_pred ------------CEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 398 ------------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 398 ------------~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
.|||+|+.| .|...|.||+|||||.|.+|.++.|++..|+
T Consensus 568 ~~~~~~V~~~GGlhVI~te~p--------es~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERH--------ESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCC--------SSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCC--------CCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 599999999 8999999999999999999999999987654
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.2e-42 Score=349.26 Aligned_cols=305 Identities=22% Similarity=0.303 Sum_probs=227.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+. ..+.++|||||+++|+.||.+.+.++.......+
T Consensus 9 ~l~~~Q~~~i~~~~~~---~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET---NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS---CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC---CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5999999999999986 8999999999999999999988765 2356899999999999999999999874333455
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh------------------hhe
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVL 264 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------~~~ 264 (480)
....++...... ......++|+|+||++|...+....+.+.++++||+||||++.+ +++
T Consensus 84 ~~~~g~~~~~~~---~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 84 VALTGEKSPEER---SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEECSCSCHHHH---HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred EEeeCCcchhhh---hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 555554432210 00111468999999999999988777888999999999999864 278
Q ss_pred eeeccccHH---HHHHHHHHhcccceeeecccc----c-cccccEEEEEEcC----------------------------
Q 011667 265 LFSATFNET---VKNFVTRIVKDYNQLFVKKEE----L-SLESVKQYKVYCP---------------------------- 308 (480)
Q Consensus 265 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~---------------------------- 308 (480)
++|||+... +..++..+............. . ............+
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998733 333332221111100000000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011667 309 -------------------------------------------------------------------------------- 308 (480)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (480)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred -------------------chhHHHHHHHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecC-------
Q 011667 309 -------------------DELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG------- 360 (480)
Q Consensus 309 -------------------~~~~k~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~------- 360 (480)
....|+..+.+.+.... ....++||||+++..++.+++.|...++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 11224444445444432 36789999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEE
Q 011667 361 -ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439 (480)
Q Consensus 361 -~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l 439 (480)
+++..+|..+++.|++|..+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+ |.++.|
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~--------~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV--------PSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC--------HHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCC--------CCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9999999999999999999999999999999999999999999999 678899999999999997 999999
Q ss_pred eeCCc
Q 011667 440 LMDGD 444 (480)
Q Consensus 440 ~~~~~ 444 (480)
++..+
T Consensus 472 ~~~~t 476 (494)
T 1wp9_A 472 MAKGT 476 (494)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 98765
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-43 Score=366.53 Aligned_cols=312 Identities=23% Similarity=0.250 Sum_probs=233.6
Q ss_pred HHHHHHHHhhcCCCCChHHHHhhcccccCC----CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
..+++.+.+.++| .||++|.++|+.++.+ ...+++++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La 430 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILA 430 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 4566666666999 8999999999999874 12489999999999999999999988753 56899999999999
Q ss_pred HHHHHHHHHHhcccCceeeEeecCCCCCccc-cc-CCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-
Q 011667 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVP-IS-KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD- 261 (480)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~- 261 (480)
.|+++.+.+++...++.+...+++....... .. ......++|+|+||+.|.+ .+.+.++++||+||+|++..
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH
Confidence 9999999999888888887777765432211 11 1112247999999998854 45688999999999999743
Q ss_pred ------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCC
Q 011667 262 ------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 329 (480)
Q Consensus 262 ------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 329 (480)
++++||||+.+..... ....+.....+.........+...+... .....+...+.......+
T Consensus 506 qr~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~l~~~i~~~l~~g~ 579 (780)
T 1gm5_A 506 QREALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPM----DRVNEVYEFVRQEVMRGG 579 (780)
T ss_dssp --CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCS----STHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEecc----chHHHHHHHHHHHHhcCC
Confidence 4899999986654322 2233222222211111112222222211 122233344555556778
Q ss_pred cEEEEeCch--------hhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 011667 330 QTIIFVRTK--------NSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 398 (480)
Q Consensus 330 ~~lVf~~s~--------~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~ 398 (480)
+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC
Confidence 999999966 457888888887 378899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeC
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 442 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~ 442 (480)
+||++++|. .+...|.||+||+||.|++|.|++++.+
T Consensus 660 ~VIi~d~~r-------~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 660 VMVIENPER-------FGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp EEEBCSCSS-------SCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred EEEEeCCCC-------CCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999994 2577889999999999999999988873
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=370.98 Aligned_cols=336 Identities=18% Similarity=0.244 Sum_probs=221.9
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEEecCHHHHHHH-HHHHHHHhccc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTRELAIQN-LEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil~Pt~~La~q~-~~~~~~~~~~~ 198 (480)
.|+|+|.++++.++.| +++++++|||+|||++|++|++..+... ..+.++|||+|+++|+.|+ .+.+.+++..
T Consensus 7 ~l~~~Q~~~i~~il~g--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG--KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS--CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhC--CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 5999999999999998 8999999999999999999998876432 2236899999999999999 9999998865
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHH------hcCccccCceEEEEEcCchhhhh-----------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM------SAKKLGFSRLKILVYDEADHMLD----------- 261 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l------~~~~~~~~~~~~lViDEah~l~~----------- 261 (480)
++.+..+.++...... .......++|+|+||++|...+ ....+.+.++++|||||||++..
T Consensus 84 ~~~v~~~~g~~~~~~~--~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKIS--FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCC--HHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhH--HHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 3666666655543321 1111135799999999999988 34456788999999999998532
Q ss_pred ---------------------hheeeeccccHH-------HHHHHHHHhc--ccceeeecccc------ccccccEEEEE
Q 011667 262 ---------------------EVLLFSATFNET-------VKNFVTRIVK--DYNQLFVKKEE------LSLESVKQYKV 305 (480)
Q Consensus 262 ---------------------~~~~~SAT~~~~-------~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~ 305 (480)
+++++|||+... ....+..... ++..+...... ...........
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 268999998852 1111111111 11001000000 00000001100
Q ss_pred EcCc----------------------------------------------------------------------------
Q 011667 306 YCPD---------------------------------------------------------------------------- 309 (480)
Q Consensus 306 ~~~~---------------------------------------------------------------------------- 309 (480)
....
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred ---------------------------------------------------------hhHHHHHHHHHHHHhcc--c-CC
Q 011667 310 ---------------------------------------------------------ELAKVMVIRDRIFELGE--K-MG 329 (480)
Q Consensus 310 ---------------------------------------------------------~~~k~~~l~~~l~~~~~--~-~~ 329 (480)
...++..+.+.+..... . .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 00001111111222111 2 68
Q ss_pred cEEEEeCchhhHHHHHHHHHhC------CCcEEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 011667 330 QTIIFVRTKNSASALHKALKDF------GYEVTTIMGA--------TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 395 (480)
Q Consensus 330 ~~lVf~~s~~~~~~l~~~L~~~------~~~~~~l~~~--------~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~ 395 (480)
++||||++++.++.++..|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHH-----HHHHHHHHhCCcceecC-CCHHH
Q 011667 396 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI-----IMEKIERYFDIKVTEVR-NSDED 469 (480)
Q Consensus 396 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~-----~~~~i~~~l~~~~~~~~-~~~~~ 469 (480)
++++||+||+| .|+..|+||+||+||.| .+++|+...+... ....+++++...+..+. ....+
T Consensus 482 ~v~~VI~~d~p--------~s~~~~~Qr~GRArr~g---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (699)
T 4gl2_A 482 ECNIVIRYGLV--------TNEIAMVQARGRARADE---STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEE 550 (699)
T ss_dssp SCCCCEEESCC--------CCHHHHHHHHTTSCSSS---CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred cCCEEEEeCCC--------CCHHHHHHHcCCCCCCC---ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999999 78999999999976543 5555665444311 11234455555555443 34445
Q ss_pred HHHHH
Q 011667 470 FKAAL 474 (480)
Q Consensus 470 ~~~~~ 474 (480)
+...+
T Consensus 551 ~~~~i 555 (699)
T 4gl2_A 551 YAHKI 555 (699)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-41 Score=365.13 Aligned_cols=303 Identities=15% Similarity=0.174 Sum_probs=221.7
Q ss_pred hhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 117 ~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
..++|. |+|+|.++|+.+++| ++++++||||||||++|++++...+.. +.++||++|+++|+.|+++.+.+++.
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g--~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQG--DSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTT--CEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred HhCCCC-CCHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 346776 899999999999999 999999999999999999998876543 56899999999999999999998754
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh---------------
Q 011667 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------- 261 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------- 261 (480)
++.+...+++...+ ..++|+|+||++|..++......+.++++|||||||++.+
T Consensus 108 --~~~v~~l~G~~~~~---------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 108 --DVNIGLITGDVQIN---------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp ---CCEEEECSSCEEC---------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred --CCeEEEEeCCCccC---------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 45555555544221 2378999999999999988777789999999999999866
Q ss_pred ---hheeeeccccHHH--HHHHHHHhcccceeeeccccccccccEEEEEE------------------------------
Q 011667 262 ---EVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVY------------------------------ 306 (480)
Q Consensus 262 ---~~~~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 306 (480)
+++++|||+++.. ..++.........+. ........+.+++..
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi--~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVI--STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEE--ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEE--ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 3799999997543 222222211111111 111111112111110
Q ss_pred --------------------------------------------------------------cCchhHHHHHHHHHHHHh
Q 011667 307 --------------------------------------------------------------CPDELAKVMVIRDRIFEL 324 (480)
Q Consensus 307 --------------------------------------------------------------~~~~~~k~~~l~~~l~~~ 324 (480)
.......+..+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 000111233333322221
Q ss_pred cccCCcEEEEeCchhhHHHHHHHHHhCCC---------------------------------------cEEEecCCCCHH
Q 011667 325 GEKMGQTIIFVRTKNSASALHKALKDFGY---------------------------------------EVTTIMGATIQE 365 (480)
Q Consensus 325 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~~~~~ 365 (480)
...++||||++++.|+.++..|...++ .+..+||+|++.
T Consensus 335 --~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~ 412 (997)
T 4a4z_A 335 --ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPI 412 (997)
T ss_dssp --TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred --CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHH
Confidence 457999999999999999999977655 589999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC-CCCCCCCCCcccccccccccccCC--CceeEEEEee
Q 011667 366 ERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-KHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLM 441 (480)
Q Consensus 366 ~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~-~~~~~~~~s~~~y~qr~GR~gR~g--~~g~~~~l~~ 441 (480)
+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|+ .+....+.|+.+|+||+|||||.| ..|.|++++.
T Consensus 413 ~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 413 VKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999999999999999999 5556555552 111122248999999999999998 5688887774
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.2e-41 Score=367.65 Aligned_cols=316 Identities=18% Similarity=0.196 Sum_probs=242.4
Q ss_pred CCCCHHHHHHHHhhcCCCCChHHHHhhcccccC----CCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 105 ~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
++.++.+.+.+...++|. |||+|.++++.++. |...+++++++||+|||++|+++++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 456777777787778987 79999999999987 522399999999999999999888876553 5699999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc-cc-cCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV-PI-SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
++|+.|+++.+.+++...++.+..+.+..+.... .. .......++|+|+||+.|. ..+.+.++++|||||||+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 9999999999999887777777666554432211 11 1111224799999998663 356688999999999999
Q ss_pred hhh-------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhc
Q 011667 259 MLD-------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 325 (480)
Q Consensus 259 l~~-------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 325 (480)
+.. ++++||||+.+.........+.++..+... ......+..++..... ... ...+....
T Consensus 737 ~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~-~~i----~~~il~~l 809 (1151)
T 2eyq_A 737 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDS-MVV----REAILREI 809 (1151)
T ss_dssp SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCH-HHH----HHHHHHHH
T ss_pred cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCH-HHH----HHHHHHHH
Confidence 653 389999998766655444444443333221 1112234444433322 111 12233333
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
..+++++|||++++.++.+++.|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 46789999999999999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCC
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
+.+. .++.+|.||+||+||.|+.|.|++++.+.
T Consensus 890 ~~~~-------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADH-------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTTS-------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCC-------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 8852 46788999999999999999999888653
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.5e-41 Score=376.60 Aligned_cols=328 Identities=16% Similarity=0.146 Sum_probs=239.1
Q ss_pred CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHH
Q 011667 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (480)
Q Consensus 107 l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q 186 (480)
+.+...++++. .+|..++|+|.++++.++.++ .+++++||||||||++|.+||+..+... .+.++||++|+++||.|
T Consensus 911 L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~-~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSD-DNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCC-SCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHH
Confidence 55677888875 789999999999999998763 7899999999999999999999988654 34589999999999999
Q ss_pred HHHHHHH-HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC--ccccCceEEEEEcCchhhhh--
Q 011667 187 NLEVLRK-MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--KLGFSRLKILVYDEADHMLD-- 261 (480)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~-- 261 (480)
.++.+.+ ++...++++....|+...+.. ....++|+||||+++..++.+. ...++++++||+||+|.+.+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~-----~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~r 1062 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK-----LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN 1062 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH-----HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTT
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh-----hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCC
Confidence 9998875 556678877666654332211 1124789999999998777652 23478899999999998764
Q ss_pred ----------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch--hHHHHH-
Q 011667 262 ----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE--LAKVMV- 316 (480)
Q Consensus 262 ----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~- 316 (480)
+++++|||+++. .++...+-.....++......++..+..++...... ......
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 379999999853 333333322333333333334444444444333221 111111
Q ss_pred ---HHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----------------------------------CCcEEEec
Q 011667 317 ---IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----------------------------------GYEVTTIM 359 (480)
Q Consensus 317 ---l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----------------------------------~~~~~~l~ 359 (480)
+...+. .....+++||||++++.|+.++..|... ...+..+|
T Consensus 1142 ~~~~~~~i~-~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAIT-KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHH-HHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHH-HhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 112122 2336789999999999999888766421 23589999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCC--CCCCCcccccccccccccCCC--cee
Q 011667 360 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK--HLEPDCEVYLHRIGRAGRFGR--KGV 435 (480)
Q Consensus 360 ~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~--~~~~s~~~y~qr~GR~gR~g~--~g~ 435 (480)
|+|++.+|..+.+.|++|.++|||||+++++|+|+|..++||.....+.+.. ..+.++.+|.||+|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999999984221111100 011578999999999999986 799
Q ss_pred EEEEeeCCc
Q 011667 436 VFNLLMDGD 444 (480)
Q Consensus 436 ~~~l~~~~~ 444 (480)
|++++.+.+
T Consensus 1301 avll~~~~~ 1309 (1724)
T 4f92_B 1301 CVIMCQGSK 1309 (1724)
T ss_dssp EEEEEEGGG
T ss_pred EEEEecchH
Confidence 998887543
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.4e-41 Score=339.95 Aligned_cols=270 Identities=18% Similarity=0.169 Sum_probs=203.5
Q ss_pred CCCCChHHHHhhcccccCCCCccE-EEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNL-IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~-lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
|+.+|+|+|. +||.++++ +++ +++||||||||++|++|++..+.. .+.++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g----- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRG----- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGST--TCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT-----
T ss_pred CCCCCCCcHH-HHHHHHhc--CCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcC-----
Confidence 6789999985 79999998 555 999999999999999999876543 356899999999999999988742
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------------- 261 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------------- 261 (480)
..+....... . .....+..|.++|++.+.+.+... ..+.++++||+||||++..
T Consensus 71 -~~v~~~~~~~--~-----~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 71 -LPIRYQTPAV--K-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp -SCEEECCTTC--S-----CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTS
T ss_pred -ceeeeeeccc--c-----ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCC
Confidence 2221111111 0 112234679999999998888754 4578999999999998511
Q ss_pred -hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhh
Q 011667 262 -EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS 340 (480)
Q Consensus 262 -~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~ 340 (480)
++++||||++..+..+ +...+..+.... ...... + ...... +.. ..+++||||++++.
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~----~------~~~~~~----l~~---~~~~~lVF~~s~~~ 200 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS----W------NTGFDW----ITD---YQGKTVWFVPSIKA 200 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC----C------SSSCHH----HHH---CCSCEEEECSSHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCc-cCCchh----h------HHHHHH----HHh---CCCCEEEEcCCHHH
Confidence 3799999998643221 112222222211 000000 0 001111 222 45799999999999
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcc----------------
Q 011667 341 ASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD---------------- 404 (480)
Q Consensus 341 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~---------------- 404 (480)
++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 201 a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~ 275 (451)
T 2jlq_A 201 GNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVI 275 (451)
T ss_dssp HHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceee
Confidence 99999999999999999999764 57899999999999999999999999999 9999998
Q ss_pred ----CCCCCCCCCCCCcccccccccccccCCC-ceeEEEEeeC
Q 011667 405 ----PPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLMD 442 (480)
Q Consensus 405 ----~p~~~~~~~~~s~~~y~qr~GR~gR~g~-~g~~~~l~~~ 442 (480)
.| .|..+|+||+||+||.|. .|.|++|+..
T Consensus 276 ~~~~~p--------~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 276 LAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eccccc--------CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 77 889999999999999998 8899877754
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.1e-42 Score=352.44 Aligned_cols=298 Identities=16% Similarity=0.148 Sum_probs=216.6
Q ss_pred CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 105 ~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
+++++.+++++.. ....|+|+|..+++.+++| ++++++||||||||++|++|++..+.. .+.++||++||++||
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g--~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHH
Confidence 5677777766643 3588999999999999998 999999999999999999999988754 356899999999999
Q ss_pred HHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh---
Q 011667 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--- 261 (480)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--- 261 (480)
.|+++.+.. ..+.+. ... .......+..+.++|.+.+...+... ..+.++++|||||||++..
T Consensus 229 ~Qi~~~l~~------~~v~~~--~~~-----l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~~~~ 294 (618)
T 2whx_A 229 AEMEEALRG------LPIRYQ--TPA-----VKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDPCSV 294 (618)
T ss_dssp HHHHHHTTT------SCEEEC--CTT-----SSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCCSHHHH
T ss_pred HHHHHHhcC------CceeEe--ccc-----ceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCCCccHH
Confidence 999987762 222111 111 01112224568889999888776654 4588999999999999721
Q ss_pred ---------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcc
Q 011667 262 ---------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 326 (480)
Q Consensus 262 ---------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 326 (480)
++++||||++..+..+.. .++..+.+... .+.. ....+...+.+
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~--~~~~ll~~l~~--- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPER--SWNTGFDWITD--- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSS--CCSSSCHHHHH---
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHH--HHHHHHHHHHh---
Confidence 489999999866432111 12222222111 0000 00011111222
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE------
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI------ 400 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~V------ 400 (480)
..+++||||++++.++.+++.|...++++..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 46799999999999999999999999999999984 688899999999999999999999999997 9998
Q ss_pred --------------EEccCCCCCCCCCCCCcccccccccccccCC-CceeEEEEee--CCccHHHHHHHHHHh
Q 011667 401 --------------VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG-RKGVVFNLLM--DGDDMIIMEKIERYF 456 (480)
Q Consensus 401 --------------i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g-~~g~~~~l~~--~~~~~~~~~~i~~~l 456 (480)
|+|+.| .+.++|+||+||+||.| ++|.|++|+. +.++...+..+++.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P--------~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEccccc--------CCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 666667 88999999999999996 4999999997 234555666666654
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.8e-41 Score=353.59 Aligned_cols=325 Identities=18% Similarity=0.225 Sum_probs=236.1
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhcc--CCCCCCCeEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQAL 175 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l--~~~~~~~~~l 175 (480)
+..+|.++++++.+.+.+.. .+ ..|+++|.++|+.++.+ +++++++||||||||+ ++|++... .....+.+++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~-r~-~lP~~~q~~~i~~~l~~-~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~il 144 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKI-RR-ELPVHAQRDEFLKLYQN-NQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVA 144 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHH-HT-TSGGGGGHHHHHHHHHH-CSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEE
T ss_pred CCCCccccCCCHHHHHHHHH-hh-cCChHHHHHHHHHHHhC-CCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEE
Confidence 46789999999999999986 56 78999999999998876 2689999999999999 45554221 1112255799
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcC
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 255 (480)
|++|+++|+.|+++.+.... +..+...++.... ........++|+|+|||++.+.+... ..+.++++|||||
T Consensus 145 vl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~----~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDE 216 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIR----FENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDE 216 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEET----TEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECS
T ss_pred ecCchHHHHHHHHHHHHHHh---CCchhheecceec----cccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecC
Confidence 99999999999988775543 2221111111100 00111235789999999999888764 4588999999999
Q ss_pred chh-hhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHH
Q 011667 256 ADH-MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 316 (480)
Q Consensus 256 ah~-l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (480)
+|. .++ ++++||||++.. .+..++.....+.+.... ..+.+++...+... ....
T Consensus 217 ah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~-~~~~ 289 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRD-YLDS 289 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSC-HHHH
T ss_pred ccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchh-HHHH
Confidence 996 433 389999999743 234555554444443332 23445444433322 2222
Q ss_pred HHHHHHHh--cccCCcEEEEeCchhhHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHHh-----cCC
Q 011667 317 IRDRIFEL--GEKMGQTIIFVRTKNSASALHKALKD-----------FGYEVTTIMGATIQEERDKIVKEFK-----DGL 378 (480)
Q Consensus 317 l~~~l~~~--~~~~~~~lVf~~s~~~~~~l~~~L~~-----------~~~~~~~l~~~~~~~~r~~~~~~f~-----~g~ 378 (480)
....+... ....+++||||+++++++.++..|.. .++.+..+||+|++.+|..+++.|+ +|.
T Consensus 290 ~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~ 369 (773)
T 2xau_A 290 AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369 (773)
T ss_dssp HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc
Confidence 22222222 12578999999999999999999975 5788999999999999999999999 999
Q ss_pred CcEEEEccccccCCCCCCCCEEEEccCCCC-------CCCCC---CCCcccccccccccccCCCceeEEEEeeCC
Q 011667 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVK-------HGKHL---EPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 443 (480)
Q Consensus 379 ~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~-------~~~~~---~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~ 443 (480)
.+|||||+++++|||+|++++||+++++.. +...+ +.|..+|+||+|||||. ++|.|+.|+++.
T Consensus 370 ~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 370 RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999887210 00000 17899999999999998 799999999743
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-40 Score=372.57 Aligned_cols=318 Identities=21% Similarity=0.280 Sum_probs=235.9
Q ss_pred CCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC--------CCCCeEEEEecCHHHHHHHHHHH
Q 011667 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--------LKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 120 ~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~--------~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
||+.++++|.+++|.++.++ +|++++||||||||++|.+|++..+... ..+.++||++|+++||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~-~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETD-ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCC-CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 89999999999999998752 8999999999999999999999887531 24668999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc--cccCceEEEEEcCchhhhh--------
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLD-------- 261 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~-------- 261 (480)
.+.+...|+++...+|+..... .....++|+||||+++..++.+.. ..++++++||+||+|.+.+
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~-----~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK-----EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEA 229 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC-----TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc-----cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHH
Confidence 9988888988877776654332 122358999999999876665432 2478899999999997643
Q ss_pred ----------------hheeeeccccHHHHHHHHHHhcc--cceeeeccccccccccEEEEEEcCc--hhHHHHHHHHHH
Q 011667 262 ----------------EVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPD--ELAKVMVIRDRI 321 (480)
Q Consensus 262 ----------------~~~~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~~l 321 (480)
|++++|||+++. .+ +..++.. +..+.......++..+.+.++.... .......+...+
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~d-vA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-ED-VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HH-HHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HH-HHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 379999999853 22 2334332 1222223333344455555443332 222222222222
Q ss_pred HH---hcccCCcEEEEeCchhhHHHHHHHHHhC-------------------------------------CCcEEEecCC
Q 011667 322 FE---LGEKMGQTIIFVRTKNSASALHKALKDF-------------------------------------GYEVTTIMGA 361 (480)
Q Consensus 322 ~~---~~~~~~~~lVf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~~~ 361 (480)
.. .....+++||||+|++.|+.+++.|.+. ...+..+||+
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 22 1225679999999999999988887531 2348899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----ccCCCCCCCCCCCCcccccccccccccCC--Ccee
Q 011667 362 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGV 435 (480)
Q Consensus 362 ~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr~GR~gR~g--~~g~ 435 (480)
|++.+|..+.+.|++|.++|||||+++++|+|+|.+++||. |++..... .+.++.+|.||+|||||.| ..|.
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~--~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW--TELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEE--EECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCc--ccCCHHHHHHhhhhccCCCCCCccE
Confidence 99999999999999999999999999999999999999996 55432111 1157899999999999987 4799
Q ss_pred EEEEeeCCccHH
Q 011667 436 VFNLLMDGDDMI 447 (480)
Q Consensus 436 ~~~l~~~~~~~~ 447 (480)
++++....+...
T Consensus 466 ~ii~~~~~~~~~ 477 (1724)
T 4f92_B 466 GILITSHGELQY 477 (1724)
T ss_dssp EEEEEESTTCCH
T ss_pred EEEEecchhHHH
Confidence 998887665443
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.4e-40 Score=334.49 Aligned_cols=299 Identities=17% Similarity=0.123 Sum_probs=219.0
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (480)
..|+|+|.++++.++.+ +++++++|||+|||++|+.++...+.. ...++|||+||++|+.||++.+.+++...+..
T Consensus 112 ~~l~~~Q~~ai~~~~~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHH--SEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 47999999999999998 899999999999999999998877643 23489999999999999999999986655556
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------------hheeee
Q 011667 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------EVLLFS 267 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------~~~~~S 267 (480)
+....++...... ....++|+|+||+.|.. .....+.++++||+||||++.. ++++||
T Consensus 188 v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 188 IKKIGGGASKDDK-----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp EEECGGGCCTTGG-----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEE
T ss_pred eEEEecCCccccc-----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEE
Confidence 6566555443322 23457999999997654 2345678899999999999764 278999
Q ss_pred ccccHHHHHHHH-HHhcccceeeeccc------cccccccEEEEEEcCch--------------------hHHHHHHHHH
Q 011667 268 ATFNETVKNFVT-RIVKDYNQLFVKKE------ELSLESVKQYKVYCPDE--------------------LAKVMVIRDR 320 (480)
Q Consensus 268 AT~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~k~~~l~~~ 320 (480)
||++........ ..+..+..+..... ......+.......+.. ..+...+.+.
T Consensus 260 ATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 999765322111 11222222222111 11111112222222111 1122233443
Q ss_pred HHHhcccCC-cEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCC
Q 011667 321 IFELGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-DVLARGFDQQQVN 398 (480)
Q Consensus 321 l~~~~~~~~-~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~Gldi~~v~ 398 (480)
+.......+ ++||||+ .+.+..+++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|+|+++
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~ 418 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLH 418 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEE
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCc
Confidence 444333334 4555555 999999999999988899999999999999999999999999999999 9999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEee
Q 011667 399 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 441 (480)
Q Consensus 399 ~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~ 441 (480)
+||++++| .++..|+||+||+||.|+.|.++.++.
T Consensus 419 ~vi~~~~~--------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 419 HVVLAHGV--------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEESSCC--------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEeCCC--------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999 788999999999999998775555554
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-40 Score=344.66 Aligned_cols=298 Identities=19% Similarity=0.223 Sum_probs=206.3
Q ss_pred HHHhhcCCC-----CChHHHH-----hhccccc------CCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 114 GLYVEMKFQ-----KPSKIQA-----ISLPMIL------TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 114 ~l~~~~~~~-----~p~~~Q~-----~~i~~il------~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
++.. +||. .|+++|. ++||.++ .| ++++++||||||||++|++|++..+.. .+.++||+
T Consensus 202 ~l~~-~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g--~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lil 276 (673)
T 2wv9_A 202 GLYG-NGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVL 276 (673)
T ss_dssp EEEE-EEEECSSSCEEEEEECC-------CCCCCGGGGSTT--CEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEE
T ss_pred Eeee-ccccccCCCccCceeeccccccchHHHhhHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEE
Confidence 4443 5777 8999999 9999998 77 999999999999999999999987654 35689999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+||++||.|+++.+..+. +. ... .. .......+.-+-+.+.+.+...+... ..+.++++|||||||
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~~~--~~-----l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--YLT--PA-----VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--ECC--C--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred ccHHHHHHHHHHHHhcCC----ee--eec--cc-----ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999998887542 21 111 00 00011112235556666665555443 568899999999999
Q ss_pred hh-----hh-------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHH
Q 011667 258 HM-----LD-------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 319 (480)
Q Consensus 258 ~l-----~~-------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (480)
++ .. ++++||||++..+..+ ..... .+.......+... ...+..
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~----~~~~~------------~i~~v~~~~~~~~--~~~~l~ 404 (673)
T 2wv9_A 343 FTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPF----PDTNS------------PVHDVSSEIPDRA--WSSGFE 404 (673)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS----CCCSS------------CEEEEECCCCSSC--CSSCCH
T ss_pred ccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhh----cccCC------------ceEEEeeecCHHH--HHHHHH
Confidence 98 11 4899999998653211 11000 0111100011100 000111
Q ss_pred HHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 011667 320 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 399 (480)
Q Consensus 320 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~ 399 (480)
.+. ...+++||||++++.++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+| +++
T Consensus 405 ~l~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 405 WIT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHH---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHH---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 122 256899999999999999999999999999999994 789999999999999999999999999999 999
Q ss_pred EEEccCCCCCC------------CCCCCCcccccccccccccC-CCceeEEEEee--CCccHHHHHHHHHHh
Q 011667 400 IVNYDPPVKHG------------KHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLM--DGDDMIIMEKIERYF 456 (480)
Q Consensus 400 Vi~~~~p~~~~------------~~~~~s~~~y~qr~GR~gR~-g~~g~~~~l~~--~~~~~~~~~~i~~~l 456 (480)
||+++....+. ...+.+.++|+||+||+||. |++|.|++|+. ..++..++..++..+
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99843211100 01117889999999999998 78999999973 344544555555544
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.1e-40 Score=333.76 Aligned_cols=276 Identities=19% Similarity=0.241 Sum_probs=195.5
Q ss_pred HHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEe
Q 011667 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205 (480)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 205 (480)
+.|..+++.+..+ ++++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+.. +..+...
T Consensus 220 ~~q~~i~~~L~~~--~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 220 TDNSSPPAVPQSF--QVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp CCCCSCCCCCSSC--EEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 4454444555555 899999999999999999999863 5589999999999999998776653 3333344
Q ss_pred ecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-----------------h--heee
Q 011667 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-----------------E--VLLF 266 (480)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-----------------~--~~~~ 266 (480)
+++.. ...+++|+|+||++| +....+.+.++++|||||||++.. + +++|
T Consensus 289 vG~~~---------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 289 TGVRT---------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp CSSCE---------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred ECcEe---------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 44321 123579999999998 355667788999999999987532 1 4677
Q ss_pred eccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHH
Q 011667 267 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 346 (480)
Q Consensus 267 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~ 346 (480)
|||++..+. ...+....+.. ........ ...... .. ....+++||||++++.++.+++
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~---~~~~~i~~---~~~~~~---------l~-~~~~~~vLVFv~Tr~~ae~la~ 414 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVAL---SNTGEIPF---YGKAIP---------IE-AIRGGRHLIFCHSKKKCDELAA 414 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEEC---BSCSSEEE---TTEEEC---------GG-GSSSSEEEEECSCHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEee---cccchhHH---HHhhhh---------hh-hccCCcEEEEeCCHHHHHHHHH
Confidence 999987321 11111111100 00000010 000000 01 1256899999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE----------Ecc-----------C
Q 011667 347 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV----------NYD-----------P 405 (480)
Q Consensus 347 ~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi----------~~~-----------~ 405 (480)
.|...++.+..+||+|++.+ |.++..+|||||+++++|||+| +++|| ||| .
T Consensus 415 ~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~ 486 (666)
T 3o8b_A 415 KLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTV 486 (666)
T ss_dssp HHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEE
T ss_pred HHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccC
Confidence 99999999999999999875 4556679999999999999997 99998 566 7
Q ss_pred CCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHH-HH--HHHHHHhCCcceecC
Q 011667 406 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI-IM--EKIERYFDIKVTEVR 464 (480)
Q Consensus 406 p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~-~~--~~i~~~l~~~~~~~~ 464 (480)
| .+.++|+||+||+|| |++|. ++|+++.+... ++ ..+.+..+..+.++.
T Consensus 487 P--------~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~ 538 (666)
T 3o8b_A 487 P--------QDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYE 538 (666)
T ss_dssp E--------CBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSC
T ss_pred c--------CCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccccc
Confidence 7 789999999999999 99999 99998765432 01 344444444444443
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.8e-41 Score=333.00 Aligned_cols=269 Identities=17% Similarity=0.214 Sum_probs=182.1
Q ss_pred cccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCc
Q 011667 134 MILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213 (480)
Q Consensus 134 ~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (480)
.+++| ++++++||||||||++|++|++..+.. .+.+++|++||++||.|+++.+..+. + ... .....
T Consensus 4 ~l~~g--~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~~--~~~~~- 70 (440)
T 1yks_A 4 MLKKG--MTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLD----V--KFH--TQAFS- 70 (440)
T ss_dssp TTSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSC----E--EEE--SSCCC-
T ss_pred HhhCC--CCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcCC----e--EEe--cccce-
Confidence 45667 999999999999999999999987654 25689999999999999998887442 1 111 11000
Q ss_pred ccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh-----h-------------hhheeeeccccHHHH
Q 011667 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM-----L-------------DEVLLFSATFNETVK 275 (480)
Q Consensus 214 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-----~-------------~~~~~~SAT~~~~~~ 275 (480)
.....+.-+-+.+.+.+...+.. ...+.++++||+||||++ . .++++||||+++.+.
T Consensus 71 ----~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 71 ----AHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp ----CCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ----eccCCccceeeecccchhHhhhC-cccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 00000011222333333332222 234789999999999997 1 148999999976543
Q ss_pred HHHHHHhcccceeeeccccccccccEEEEEEcCch--hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCC
Q 011667 276 NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE--LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 353 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 353 (480)
.+. .....+ ......++.. ...+.. +.+ ..+++||||++++.++.+++.|...++
T Consensus 146 ~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~----l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~ 202 (440)
T 1yks_A 146 EFP----HSNGEI------------EDVQTDIPSEPWNTGHDW----ILA---DKRPTAWFLPSIRAANVMAASLRKAGK 202 (440)
T ss_dssp SSC----CCSSCE------------EEEECCCCSSCCSSSCHH----HHH---CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hhh----hcCCCe------------eEeeeccChHHHHHHHHH----HHh---cCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 211 111111 1111111111 111111 222 467999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-------------------ccCCCCCCCCCC
Q 011667 354 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-------------------YDPPVKHGKHLE 414 (480)
Q Consensus 354 ~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~-------------------~~~p~~~~~~~~ 414 (480)
.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.|
T Consensus 203 ~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p-------- 269 (440)
T 1yks_A 203 SVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR-------- 269 (440)
T ss_dssp CEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE--------
T ss_pred CEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc--------
Confidence 9999999 4688999999999999999999999999999 999997 7888
Q ss_pred CCcccccccccccccC-CCceeEEEEee--CCccHHHHHHHHHHh
Q 011667 415 PDCEVYLHRIGRAGRF-GRKGVVFNLLM--DGDDMIIMEKIERYF 456 (480)
Q Consensus 415 ~s~~~y~qr~GR~gR~-g~~g~~~~l~~--~~~~~~~~~~i~~~l 456 (480)
.+..+|+||+||+||. |++|.|++|+. ..++...+..++..+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 8899999999999997 68999999972 344555666666655
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.3e-39 Score=323.18 Aligned_cols=281 Identities=21% Similarity=0.260 Sum_probs=205.3
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce-
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT- 201 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~- 201 (480)
.|+|+|.++++.++.+ +++++++|||+|||++|+.++... +.++|||||+++|+.||.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~--~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTT--TEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999998 789999999999999999988765 458999999999999999999884 455
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------hheeeec
Q 011667 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------EVLLFSA 268 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------~~~~~SA 268 (480)
+....++... ..+|+|+||+.+...+.. ...++++||+||||++.+ +++++||
T Consensus 161 v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSA 226 (472)
T 2fwr_A 161 VGEFSGRIKE-----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTA 226 (472)
T ss_dssp EEEBSSSCBC-----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEES
T ss_pred eEEECCCcCC-----------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEec
Confidence 4444443321 368999999999876642 124589999999999875 3789999
Q ss_pred cccHH-------------------HHHHHHHHhcccceeee--ccccc------------------------cccccEEE
Q 011667 269 TFNET-------------------VKNFVTRIVKDYNQLFV--KKEEL------------------------SLESVKQY 303 (480)
Q Consensus 269 T~~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~------------------------~~~~~~~~ 303 (480)
|+... ...+...++..+....+ ..... ....+.+.
T Consensus 227 Tp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 227 TFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred CccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 98621 11111111111111000 00000 00000000
Q ss_pred EE--------------------EcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCC
Q 011667 304 KV--------------------YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363 (480)
Q Consensus 304 ~~--------------------~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 363 (480)
+. .......+...+.+.+.. ...+++||||++.+.++.+++.|. +..+||+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~ 379 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS 379 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC
Confidence 00 000122345555554444 357899999999999999999883 568999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc---eeEEEEe
Q 011667 364 QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK---GVVFNLL 440 (480)
Q Consensus 364 ~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~---g~~~~l~ 440 (480)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+. ..++.|+
T Consensus 380 ~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 380 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS--------GSAREYIQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp SHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS--------SCCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC--------CCHHHHHHHHhhccCCCCCCceEEEEEEE
Confidence 9999999999999999999999999999999999999999999 6889999999999999843 3455566
Q ss_pred eCCc
Q 011667 441 MDGD 444 (480)
Q Consensus 441 ~~~~ 444 (480)
+...
T Consensus 452 ~~~t 455 (472)
T 2fwr_A 452 SRGT 455 (472)
T ss_dssp ECSC
T ss_pred eCCC
Confidence 6543
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-38 Score=318.73 Aligned_cols=259 Identities=18% Similarity=0.193 Sum_probs=186.4
Q ss_pred ccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCC
Q 011667 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212 (480)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (480)
..+..+ ++++++||||||||++|++|++..+.. .+.++||++||++|+.|+++.+.. ..+.........
T Consensus 16 ~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~- 84 (459)
T 2z83_A 16 NMLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR- 84 (459)
T ss_dssp GGGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC------
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc-
Confidence 334455 899999999999999999999987653 356899999999999999988862 222111111100
Q ss_pred cccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh-----hhh-------------hheeeeccccHHH
Q 011667 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-----MLD-------------EVLLFSATFNETV 274 (480)
Q Consensus 213 ~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-----l~~-------------~~~~~SAT~~~~~ 274 (480)
....+.-+.++|.+.+...+... ..+.++++|||||||+ ++. ++++||||++..+
T Consensus 85 ------~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~ 157 (459)
T 2z83_A 85 ------EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTT 157 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred ------CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcch
Confidence 01123457889999887766653 4588999999999998 332 4899999998653
Q ss_pred HHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc
Q 011667 275 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 354 (480)
..+... ..|. ..+. .... .......... +.+ ..+++||||++++.++.++..|...++.
T Consensus 158 ~~~~~~--~~pi-~~~~-~~~~----------~~~~~~~~~~----l~~---~~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 158 DPFPDS--NAPI-HDLQ-DEIP----------DRAWSSGYEW----ITE---YAGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CSSCCC--SSCE-EEEE-CCCC----------SSCCSSCCHH----HHH---CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hhhccC--CCCe-EEec-ccCC----------cchhHHHHHH----HHh---cCCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 211100 0111 0000 0000 0000011111 222 3679999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE--------------------ccCCCCCCCCCC
Q 011667 355 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN--------------------YDPPVKHGKHLE 414 (480)
Q Consensus 355 ~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~--------------------~~~p~~~~~~~~ 414 (480)
+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p-------- 283 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP-------- 283 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE--------
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC--------
Confidence 9999995 6788999999999999999999999999999 99999 6688
Q ss_pred CCcccccccccccccCCC-ceeEEEEeeCC
Q 011667 415 PDCEVYLHRIGRAGRFGR-KGVVFNLLMDG 443 (480)
Q Consensus 415 ~s~~~y~qr~GR~gR~g~-~g~~~~l~~~~ 443 (480)
.|..+|+||+||+||.|. +|.|++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 899999999999999997 99999999875
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=284.44 Aligned_cols=193 Identities=45% Similarity=0.756 Sum_probs=166.9
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCC
Q 011667 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172 (480)
Q Consensus 93 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~ 172 (480)
..+..+..+|+++++++.+++++.. +||..|+++|.++||.++.|.++|++++||||||||++|++|+++++.....++
T Consensus 85 ~~p~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~ 163 (300)
T 3fmo_B 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (300)
T ss_dssp TCCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCcCCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc
Confidence 3455678899999999999999987 999999999999999999875589999999999999999999999998777788
Q ss_pred eEEEEecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEE
Q 011667 173 QALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKI 250 (480)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~ 250 (480)
++|||+||++||.|+++.+..++... ++.+.+.+++...... ...+++|+|+||++|++++.+ +.+.+.++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~ 238 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-----QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-----CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-----hcCCCCEEEECHHHHHHHHHhcCCCChhhceE
Confidence 99999999999999999999998754 4666666665543221 134579999999999999976 5667899999
Q ss_pred EEEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeeec
Q 011667 251 LVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVK 291 (480)
Q Consensus 251 lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~ 291 (480)
|||||||+|++ |+++||||++..+..++..++.+|..+.+.
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999886 389999999999999999999999887664
No 51
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-35 Score=296.83 Aligned_cols=310 Identities=16% Similarity=0.147 Sum_probs=235.1
Q ss_pred HHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 115 l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
....+|+. |+++|.-..-.+..| + |..+.||+|||+++.+|++-... .+..+.|++|++.||.|-++++..+
T Consensus 68 a~R~lg~r-~~dvQligg~~L~~G--~--iaEM~TGEGKTLva~lp~~lnAL---~G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 68 ARRTLGMR-PFDVQVMGGIALHEG--K--VAEMKTGEGKTLAATMPIYLNAL---IGKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp HHHHTSCC-CCHHHHHHHHHHHTT--C--EEECCTTSCHHHHTHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHHhCC--C--hhhccCCCCccHHHHHHHHHHHh---cCCceEEEeccHHHHHhHHHHHHHH
Confidence 33446666 999999988888887 3 99999999999999999874322 2557999999999999999999999
Q ss_pred hcccCceeeEeecCCC----------------------------C------------------CcccccCCCCCCCeEEE
Q 011667 195 GKHTGITSECAVPTDS----------------------------T------------------NYVPISKRPPVTAQVVI 228 (480)
Q Consensus 195 ~~~~~~~~~~~~~~~~----------------------------~------------------~~~~~~~~~~~~~~I~v 228 (480)
...+|+.+.+++..++ . ......++....++|.+
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 9999999988876210 0 00011112223589999
Q ss_pred eChHHH-HHHHhcC------ccccCceEEEEEcCchhhhhh---------------------------------------
Q 011667 229 GTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE--------------------------------------- 262 (480)
Q Consensus 229 ~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~~--------------------------------------- 262 (480)
+|..-| .++|..+ ......+.+.||||+|.++-.
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 999887 4555432 223467889999999987630
Q ss_pred --------------------------------------------------------------------------------
Q 011667 263 -------------------------------------------------------------------------------- 262 (480)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (480)
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence
Q ss_pred --------------------------------heeeeccccHHHHHHHHHHhcccceeeeccccccccccEEEEEEcCch
Q 011667 263 --------------------------------VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 310 (480)
Q Consensus 263 --------------------------------~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+.+||+|.......+...+-. ..+.++... +...+.+........
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnk-p~~R~d~~d~vy~t~ 456 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHK-PMIRKDHDDLVFRTQ 456 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSS-CCCCEECCCEEESSH
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCC-CcceeecCcEEEecH
Confidence 789999998877665444432 233333222 222223322223456
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 011667 311 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 390 (480)
Q Consensus 311 ~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~ 390 (480)
..|...+...+........++||||+|++.++.++..|...|+.+..+||+..+.++..+...|+.| .|+|||++++|
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgR 534 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGR 534 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhC
Confidence 6788888877766655678999999999999999999999999999999996666665555666655 69999999999
Q ss_pred CCCCC--------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCcc
Q 011667 391 GFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 445 (480)
Q Consensus 391 Gldi~--------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~ 445 (480)
|+||+ +..+||+|++| .|...|.||+|||||+|.+|.++.|++..|+
T Consensus 535 GtDI~lg~~V~~~GglhVInte~P--------es~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 535 GTDIKLGPGVAELGGLCIIGTERH--------ESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TCCCCCCTTTTTTTSCEEEESSCC--------SSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CcCccCCcchhhcCCCEEEecCCC--------CCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99998 67799999999 8999999999999999999999999997663
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.5e-37 Score=302.96 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=178.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. ++.+....+.... ..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-------~~ 67 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-------ER 67 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-------cC
Confidence 899999999999999999999965543 35689999999999999888775 2333333222110 11
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIV 282 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~ 282 (480)
..+.-+.++|.+.+...+.. ...+.++++||+||||++.. ++++||||+++.+.. +.
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~~ 142 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----FP 142 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----SC
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----hc
Confidence 11245778899988776666 55688999999999999831 379999999864221 10
Q ss_pred cccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCC
Q 011667 283 KDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 362 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 362 (480)
.... .+.......+.. ....+...+.+ ..+++||||++++.++.+++.|...++.+..+||+
T Consensus 143 ~~~~------------~i~~~~~~~~~~--~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~- 204 (431)
T 2v6i_A 143 PSNS------------PIIDEETRIPDK--AWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK- 204 (431)
T ss_dssp CCSS------------CCEEEECCCCSS--CCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-
T ss_pred CCCC------------ceeeccccCCHH--HHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-
Confidence 0000 000000001100 00111111222 36789999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE-----------------EEEccCCCCCCCCCCCCccccccccc
Q 011667 363 IQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL-----------------IVNYDPPVKHGKHLEPDCEVYLHRIG 425 (480)
Q Consensus 363 ~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~-----------------Vi~~~~p~~~~~~~~~s~~~y~qr~G 425 (480)
+|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.| .+..+|+||+|
T Consensus 205 ---~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p--------~~~~~~~Qr~G 272 (431)
T 2v6i_A 205 ---TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIA--------ITPASAAQRRG 272 (431)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEE--------CCHHHHHHHHT
T ss_pred ---cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccccc--------CCHHHHHHhhh
Confidence 577899999999999999999999999999 665 5677888 78999999999
Q ss_pred ccccCCC-ceeEEEEe
Q 011667 426 RAGRFGR-KGVVFNLL 440 (480)
Q Consensus 426 R~gR~g~-~g~~~~l~ 440 (480)
|+||.|. .|.++++.
T Consensus 273 R~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 273 RIGRNPEKLGDIYAYS 288 (431)
T ss_dssp TSSCCTTCCCCEEEEC
T ss_pred ccCCCCCCCCeEEEEc
Confidence 9999985 45555444
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.5e-37 Score=318.98 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=178.1
Q ss_pred CChHHHHhhcccccC----CCCccEEEEccCCCccchHhHHHHhhccCCC------CCCCeEEEEecCHHHHHHHH-HHH
Q 011667 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPTRELAIQNL-EVL 191 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~------~~~~~~lil~Pt~~La~q~~-~~~ 191 (480)
.|+|+|.++++.++. | .++++++++||||||++++..+...+... ..+.++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~-~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG-KKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT-CSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcC-CCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 4 26789999999999999655443333221 15679999999999999998 766
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc----CccccCceEEEEEcCchhhhh------
Q 011667 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA----KKLGFSRLKILVYDEADHMLD------ 261 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~----~~~~~~~~~~lViDEah~l~~------ 261 (480)
..++.. +..+.+. ......+|+|+||++|...+.. ..+....+++||+||||++..
T Consensus 257 ~~~~~~----~~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 257 TPFGDA----RHKIEGG----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp TTTCSS----EEECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred Hhcchh----hhhhhcc----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 655432 1111111 1123478999999999887642 234456789999999999874
Q ss_pred ----------hheeeeccccHHHHHHHHHHhcccceeeeccccc---cccccEEEEE-----------------------
Q 011667 262 ----------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL---SLESVKQYKV----------------------- 305 (480)
Q Consensus 262 ----------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------------------- 305 (480)
++++||||+..........++..+.......... .........+
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 2899999977433222333333322111000000 0000000000
Q ss_pred -----EcCch------hHHHHHHHHHH---HHhcccCCcEEEEeCchhhHHHHHHHHHhCCC--------cEEEecCCCC
Q 011667 306 -----YCPDE------LAKVMVIRDRI---FELGEKMGQTIIFVRTKNSASALHKALKDFGY--------EVTTIMGATI 363 (480)
Q Consensus 306 -----~~~~~------~~k~~~l~~~l---~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~--------~~~~l~~~~~ 363 (480)
....- ..+...+.+.+ .......+++||||+++.+|+.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000 01111222222 22223568999999999999999999977543 3788999976
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC
Q 011667 364 QEERDKIVKEFKDGLTQ---VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 432 (480)
Q Consensus 364 ~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~ 432 (480)
+ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++| .|+..|+||+||+||.+.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~--------~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVV--------NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC--------CCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecC--------CChHHHHHHHhhhcccCc
Confidence 4 799999999998766 89999999999999999999999999 789999999999999874
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.3e-35 Score=321.05 Aligned_cols=302 Identities=18% Similarity=0.153 Sum_probs=210.0
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.|+|+|..++..++.....++|++++||+|||++++..+...+... ...++|||||+ .|+.||...+.+++ ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 6899999999998876446899999999999999877776655432 34489999999 99999999997765 3333
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEEEEEcCchhhhh--------------------
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEADHMLD-------------------- 261 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~-------------------- 261 (480)
....+.................+|+|+|++.+...... ..+...++++||+||||++.+
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 33322111000011112223578999999988653221 123455799999999999853
Q ss_pred hheeeeccccH----HHHHHHHH----------------------------Hhcc-c---c-------------------
Q 011667 262 EVLLFSATFNE----TVKNFVTR----------------------------IVKD-Y---N------------------- 286 (480)
Q Consensus 262 ~~~~~SAT~~~----~~~~~~~~----------------------------~~~~-~---~------------------- 286 (480)
.++++|||+-. ++..++.. +... + .
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 26899999631 11000000 0000 0 0
Q ss_pred ---------------------------eeeec--cc---cccccccEEEEEE----------------------------
Q 011667 287 ---------------------------QLFVK--KE---ELSLESVKQYKVY---------------------------- 306 (480)
Q Consensus 287 ---------------------------~~~~~--~~---~~~~~~~~~~~~~---------------------------- 306 (480)
.+... .. .............
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000 00 0000000011111
Q ss_pred ----------------cCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHH
Q 011667 307 ----------------CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDK 369 (480)
Q Consensus 307 ----------------~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~ 369 (480)
......|...+...+.. ...+++||||+++..++.++..|.. .|+.+..+||+|++.+|..
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 11223456666664444 3678999999999999999999984 5999999999999999999
Q ss_pred HHHHHhcCC--CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEE
Q 011667 370 IVKEFKDGL--TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 439 (480)
Q Consensus 370 ~~~~f~~g~--~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l 439 (480)
+++.|++|+ ++|||||+++++|+|+|++++||+||+| .++..|.||+||+||.|+.|.++++
T Consensus 546 ~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p--------~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP--------FNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp HHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC--------SSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred HHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC--------CCHHHHHHHhhccccCCCCceEEEE
Confidence 999999998 9999999999999999999999999999 6799999999999999998865544
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.3e-34 Score=289.39 Aligned_cols=296 Identities=19% Similarity=0.196 Sum_probs=204.2
Q ss_pred CChHHHHhhccccc----CCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.|+|+|.++++.++ .+ +++|++++||+|||++++..+. .+.......++|||||+ .|+.||.+++.++....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICPL-SVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTS
T ss_pred cchHHHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCc
Confidence 59999999998764 34 7899999999999998655444 33333345689999995 58999999999987543
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---------------h
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---------------V 263 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~---------------~ 263 (480)
.+....+.... ......+|+|+||+++..... +....+++||+||||++.+. .
T Consensus 113 --~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~ 180 (500)
T 1z63_A 113 --RFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 180 (500)
T ss_dssp --CEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred --eEEEEecCchh-------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcE
Confidence 33333332211 112357899999999965443 33457899999999998642 7
Q ss_pred eeeeccccH-HHHHH---H---------------------------------HHHhcccceeeecccc----ccccccEE
Q 011667 264 LLFSATFNE-TVKNF---V---------------------------------TRIVKDYNQLFVKKEE----LSLESVKQ 302 (480)
Q Consensus 264 ~~~SAT~~~-~~~~~---~---------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~ 302 (480)
+++|||+.. ...++ + ...+. +..+...... ..++....
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~ 259 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIE 259 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeE
Confidence 899999742 11111 1 11111 1111100000 01111222
Q ss_pred EEEEcCc--------------------------------------------------------hhHHHHHHHHHHHHhcc
Q 011667 303 YKVYCPD--------------------------------------------------------ELAKVMVIRDRIFELGE 326 (480)
Q Consensus 303 ~~~~~~~--------------------------------------------------------~~~k~~~l~~~l~~~~~ 326 (480)
..+.++. ...|+..+.+.+.+...
T Consensus 260 ~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~ 339 (500)
T 1z63_A 260 TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALD 339 (500)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHc
Confidence 2222210 11333444454555445
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEccccccCCCCCCCCEEEEc
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLISTDVLARGFDQQQVNLIVNY 403 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-iLv~T~~~~~Gldi~~v~~Vi~~ 403 (480)
.+.++||||++...++.++..|... ++.+..+||++++.+|..+++.|++| ... +|++|+++++|+|++.+++||+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 6789999999999999999999875 99999999999999999999999988 454 79999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeE--EEEeeCC
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV--FNLLMDG 443 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~--~~l~~~~ 443 (480)
|+| .++..|.||+||++|.|+.+.+ +.|++..
T Consensus 420 d~~--------~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 420 DRW--------WNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp SCC--------SCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCC--------CCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999 5678899999999999976554 5667654
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.7e-34 Score=292.99 Aligned_cols=284 Identities=18% Similarity=0.182 Sum_probs=189.8
Q ss_pred cccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCC
Q 011667 132 LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211 (480)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (480)
....+.| ++++++||||||||+.++..++.. ...+|++|||+||.|+++.+... ++.+....|+...
T Consensus 149 ~ar~l~r--k~vlv~apTGSGKT~~al~~l~~~-------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 149 DARAMQR--KIIFHSGPTNSGKTYHAIQKYFSA-------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp HHHTSCC--EEEEEECCTTSSHHHHHHHHHHHS-------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred HHHhcCC--CEEEEEcCCCCCHHHHHHHHHHhc-------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 3445677 999999999999998433333321 24599999999999999998876 4555555554322
Q ss_pred CcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------------------hheeeeccccH
Q 011667 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------------------EVLLFSATFNE 272 (480)
Q Consensus 212 ~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-------------------~~~~~SAT~~~ 272 (480)
. ........+++++|++.+. ....+++|||||||++.+ +++++|||.+
T Consensus 216 i----v~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 216 T----VQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp C----CSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred E----ecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 1 1111112567888875441 246789999999999865 2778899943
Q ss_pred HHHHHHHHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCC
Q 011667 273 TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~ 352 (480)
.+..+.... .....+.... ...... . ...... . +.. ...+.+|||+++++++.++..|...+
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~---r~~~l~---~-~~~~l~---~----l~~---~~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYK---RLTPIS---V-LDHALE---S----LDN---LRPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECC---CSSCEE---E-CSSCCC---S----GGG---CCTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCceEEEEee---ecchHH---H-HHHHHH---H----HHh---cCCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 333333322 2222221110 000000 0 000000 0 111 23456899999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccCCCC-----C-CCCCCCCcccccccc
Q 011667 353 YEVTTIMGATIQEERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVK-----H-GKHLEPDCEVYLHRI 424 (480)
Q Consensus 353 ~~~~~l~~~~~~~~r~~~~~~f~~--g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~-----~-~~~~~~s~~~y~qr~ 424 (480)
+.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||++++++. + ....+.|..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 9999999999542 0 001126899999999
Q ss_pred cccccCCCc---eeEEEEeeCCccHHHHHHHHHHhCCccee
Q 011667 425 GRAGRFGRK---GVVFNLLMDGDDMIIMEKIERYFDIKVTE 462 (480)
Q Consensus 425 GR~gR~g~~---g~~~~l~~~~~~~~~~~~i~~~l~~~~~~ 462 (480)
|||||.|.. |.|+.++. ++...+..+.......+..
T Consensus 424 GRAGR~g~~g~~G~v~~l~~--~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMNH--EDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TTBTCTTSSCSSEEEEESST--THHHHHHHHHHSCCCCCCC
T ss_pred cCCCCCCCCCCCEEEEEEec--chHHHHHHHHhcCcchhhh
Confidence 999999964 66665543 3433444444444444443
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.9e-34 Score=264.85 Aligned_cols=198 Identities=26% Similarity=0.432 Sum_probs=169.5
Q ss_pred cCCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC--
Q 011667 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-- 168 (480)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~-- 168 (480)
.+...+.+..+|.++++++.+++++.+ +||..|+|+|.++|+.++.| +++++++|||||||++|++|++..+...
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g--~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHT--CCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 345566788999999999999999986 99999999999999999999 9999999999999999999999887532
Q ss_pred ---CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcccc
Q 011667 169 ---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (480)
Q Consensus 169 ---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 245 (480)
..++++||++||++|+.|+++.+++++...++.+.+.+++...... ......+++|+|+||++|.+++......+
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH--HHHHHHCCSEEEECHHHHHHHHHHTSCCC
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCCCc
Confidence 3467899999999999999999999998888888777766543321 11112247899999999999999888889
Q ss_pred CceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccc
Q 011667 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293 (480)
Q Consensus 246 ~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
.++++||+||||++.+ ++++||||+++.+..++..++.+|..+.+...
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999876 38999999999999999999999888877543
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.9e-33 Score=256.05 Aligned_cols=192 Identities=33% Similarity=0.539 Sum_probs=159.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEE
Q 011667 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (480)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~l 175 (480)
+.+..+|+++++++.+++++.. +||..|+++|.++++.+++| +++++++|||||||++|++|++..+.....+.++|
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 3457889999999999999986 99999999999999999998 99999999999999999999999987666677999
Q ss_pred EEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcC
Q 011667 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (480)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 255 (480)
|++||++|+.|+++.+.+++...++.+...+++...... ........++|+|+||++|.+++..+.+.+.++++||+||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE-MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH-HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 999999999999999999988777777666665543221 1112222389999999999999988777888999999999
Q ss_pred chhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeec
Q 011667 256 ADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVK 291 (480)
Q Consensus 256 ah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~ 291 (480)
||++.+ ++++||||+++.+..++..++.+|..+.+.
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999865 379999999999999999999988776553
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.4e-34 Score=262.89 Aligned_cols=201 Identities=29% Similarity=0.500 Sum_probs=162.5
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---------
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--------- 168 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~--------- 168 (480)
+..+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+...
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 97 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEH--RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccc
Confidence 67889999999999999986 99999999999999999999 9999999999999999999999887432
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCce
Q 011667 169 LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (480)
Q Consensus 169 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 248 (480)
..++++||++||++|+.|+++.+.+++...++.+...+++...... ......+++|+|+||++|.+++......+.++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ--IREVQMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHH--HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 2346899999999999999999999988777777666666543321 11122357999999999999999888888999
Q ss_pred EEEEEcCchhhhh----------------------hheeeeccccHHHHHHHHHHhcccceeeeccccccccccEEE
Q 011667 249 KILVYDEADHMLD----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 303 (480)
Q Consensus 249 ~~lViDEah~l~~----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (480)
++||+||||++.+ ++++||||+++.+..++..++.+|..+.+.........+.|.
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999998764 278999999999999999999998888777665555555543
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4e-33 Score=252.13 Aligned_cols=189 Identities=31% Similarity=0.527 Sum_probs=161.1
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.+ +||..|+++|.++++.+++| +++++++|||||||++|++|++..+.....+.++||++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 79 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRG--ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA 79 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc
Confidence 4679999999999999986 99999999999999999998 99999999999999999999999987766678999999
Q ss_pred cCHHHHHHHHHHHHHHhccc----CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEc
Q 011667 179 PTRELAIQNLEVLRKMGKHT----GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 254 (480)
||++|+.|+++.+.++.... ++.+...+++.... ........+++|+|+||++|.+++..+...+.++++||+|
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ--KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH--HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH--HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988765 55655555554322 1222333468999999999999998877788999999999
Q ss_pred Cchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeecc
Q 011667 255 EADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKK 292 (480)
Q Consensus 255 Eah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 292 (480)
|||++.+ ++++||||++..+..++..++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999875 3799999999999999999999987776543
No 61
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-32 Score=249.42 Aligned_cols=191 Identities=34% Similarity=0.554 Sum_probs=160.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEE
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~li 176 (480)
....+|+++++++.+++.+.. +||..|+|+|.++++.+++| +++++.+|||+|||++|++|++..+.....++++||
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred cccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC--CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 346789999999999999986 89999999999999999998 999999999999999999999999877667789999
Q ss_pred EecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCc
Q 011667 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (480)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 256 (480)
++||++|+.|+++.+..++...++.+....++....... . ....++|+|+||++|.+++......+.++++||+|||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA--E-GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH--h-cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 999999999999999999887788777776665433211 1 1123899999999999999888888899999999999
Q ss_pred hhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeeccc
Q 011667 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293 (480)
Q Consensus 257 h~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
|++.+ ++++||||+++.+..++..++.+|..+.+...
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99765 27899999999999999999998887766544
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=253.14 Aligned_cols=191 Identities=28% Similarity=0.442 Sum_probs=156.9
Q ss_pred CCCCCCCCCccc-CCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---
Q 011667 93 DTPYTSATTFED-LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--- 168 (480)
Q Consensus 93 ~~~~~~~~~f~~-~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~--- 168 (480)
...+.+..+|.+ +++++.+++++.+ +||..|+|+|.++++.+++| +++++.+|||||||++|++|++..+...
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~ 88 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQG--IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 88 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC-----
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhccch
Confidence 334567789999 7999999999987 89999999999999999999 9999999999999999999999877532
Q ss_pred ---CCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCcccc
Q 011667 169 ---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (480)
Q Consensus 169 ---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 245 (480)
..++++||++||++|+.|+++.+.++. ..++.+...+++...... ......+++|+|+||++|.+++......+
T Consensus 89 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 89 REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQ--IEDISKGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------C--HHHHHSCCSEEEECHHHHHHHHHTTCCCC
T ss_pred hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcCc
Confidence 256789999999999999999999986 346666666655543321 11122357999999999999998888889
Q ss_pred CceEEEEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceee
Q 011667 246 SRLKILVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLF 289 (480)
Q Consensus 246 ~~~~~lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 289 (480)
.++++||+||||++.+ ++++||||+++.+..++..++.+|..+.
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999875 3799999999999999999998887664
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-32 Score=246.35 Aligned_cols=184 Identities=34% Similarity=0.546 Sum_probs=157.9
Q ss_pred CCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++..+.....++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeC
Confidence 579999999999999986 99999999999999999998 999999999999999999999998876666779999999
Q ss_pred CHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 180 TRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 180 t~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
|++|+.|+++.+.++.... ++.+....++..... .......+++|+|+||++|.+++..+...+.++++||+||||+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD--DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHH--HHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 9999999999999998766 566666655543221 1112234689999999999999988777889999999999998
Q ss_pred hhh------------------hheeeeccccHHHHHHHHHHhccccee
Q 011667 259 MLD------------------EVLLFSATFNETVKNFVTRIVKDYNQL 288 (480)
Q Consensus 259 l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~ 288 (480)
+.+ ++++||||++..+..++..++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 765 379999999999999999999877544
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.1e-33 Score=251.98 Aligned_cols=193 Identities=28% Similarity=0.445 Sum_probs=158.1
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCC
Q 011667 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (480)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~ 171 (480)
++..+.+..+|+++++++.+++.+.. +||..|+++|.++++.+++| +++++++|||+|||++|++|++..+.....+
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 92 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLS 92 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 44555667899999999999999986 99999999999999999998 9999999999999999999999998766667
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEE
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 250 (480)
+++||++||++|+.|+++.+.+++... ++.+...+++........ ...+++|+|+||++|.+++..+.+.+.++++
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT---RLKKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH---HTTSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH---hccCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 899999999999999999999987654 666666665543221111 1125899999999999999887778899999
Q ss_pred EEEcCchhhhh-------------------hheeeeccccHHHHHHHHHHhcccceeee
Q 011667 251 LVYDEADHMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLFV 290 (480)
Q Consensus 251 lViDEah~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 290 (480)
||+||||++.+ ++++||||+++.+..++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999854 27899999999999988888887766543
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=253.90 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=165.5
Q ss_pred cCCCCCCCCCCcccC----CCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccC
Q 011667 91 TGDTPYTSATTFEDL----NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 91 ~~~~~~~~~~~f~~~----~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.+...+.+..+|+++ ++++.+++++.+ +||..|+|+|.++++.+++| +++++.+|||||||++|++|++..+.
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHG--RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 344556678889987 899999999987 89999999999999999999 99999999999999999999999886
Q ss_pred C-CCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC--cc
Q 011667 167 P-NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--KL 243 (480)
Q Consensus 167 ~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~ 243 (480)
. ...+.++||++||++|+.|+++.+.+++...++.+....++.... .........+++|+|+||++|..++... .+
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH-TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH-HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 4 335668999999999999999999999887777765554433211 1122233456899999999999999875 46
Q ss_pred ccCceEEEEEcCchhhhh----------------------hheeeeccccHHHHHHHHHHhcccceeeeccc
Q 011667 244 GFSRLKILVYDEADHMLD----------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 293 (480)
Q Consensus 244 ~~~~~~~lViDEah~l~~----------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
.+.++++||+||||++.+ ++++||||+++.+..++..++.+|..+.+...
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 788999999999999865 27999999999999999999999888776543
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=257.02 Aligned_cols=188 Identities=32% Similarity=0.458 Sum_probs=161.7
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
...+|+++++++.+++++.. +||..|+++|.++++.+++| +++++++|||||||++|++|++..+.....+.++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 46789999999999999986 99999999999999999999 9999999999999999999999987666567789999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhc-CccccCceEEEEEcCc
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEA 256 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 256 (480)
+||++|+.|+++.+++++...++.+.+.+++...... ......+++|+|+||++|.+++.. ..+.+.++++||+|||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ--SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH--HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 9999999999999999988888887777766543221 111123579999999999999886 4567889999999999
Q ss_pred hhhhh------------------hheeeeccccHHHHHHHHHHhcccceeee
Q 011667 257 DHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFV 290 (480)
Q Consensus 257 h~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 290 (480)
|++.+ ++++||||++..+..++..++.+|..+.+
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99876 37999999999999999999998877654
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.4e-31 Score=285.62 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=219.3
Q ss_pred CChHHHHhhccccc----CCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.++|+|.+++..++ .+ +++|++.+||+|||++++..+...+........+||||| ..|+.||.+.+.+++...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~--~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKG--DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTT--CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CcCHHHHHHHHHHHHHhhcC--CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 68999999998766 55 899999999999999866655444333333457999999 578999999999997543
Q ss_pred CceeeEeecCCCCCcc----------cccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh-------
Q 011667 199 GITSECAVPTDSTNYV----------PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD------- 261 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~------- 261 (480)
.+.+.++....... .........++|+|+|++.+...... +....+++|||||||++.+
T Consensus 313 --~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s~~~~ 388 (800)
T 3mwy_W 313 --NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAESSLYE 388 (800)
T ss_dssp --CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSSHHHH
T ss_pred --eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchhHHHH
Confidence 33333333211100 00012233578999999999765432 2234689999999999854
Q ss_pred --------hheeeecccc----HHHHHHHHHHhc-----------------------------ccceeeeccccc--ccc
Q 011667 262 --------EVLLFSATFN----ETVKNFVTRIVK-----------------------------DYNQLFVKKEEL--SLE 298 (480)
Q Consensus 262 --------~~~~~SAT~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~ 298 (480)
..+++|||+- .++-.++..... .+..+.-..... .++
T Consensus 389 ~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP 468 (800)
T 3mwy_W 389 SLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLP 468 (800)
T ss_dssp HHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSC
T ss_pred HHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccC
Confidence 2789999972 122111111100 000000000000 011
Q ss_pred ccEEEEEEcCc---------------------------------------------------------------------
Q 011667 299 SVKQYKVYCPD--------------------------------------------------------------------- 309 (480)
Q Consensus 299 ~~~~~~~~~~~--------------------------------------------------------------------- 309 (480)
......+.+..
T Consensus 469 ~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~ 548 (800)
T 3mwy_W 469 SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL 548 (800)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHH
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHH
Confidence 11111111110
Q ss_pred -----hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC---cE
Q 011667 310 -----ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT---QV 381 (480)
Q Consensus 310 -----~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~---~i 381 (480)
...|+..+..++......+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++.. .+
T Consensus 549 ~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~ 628 (800)
T 3mwy_W 549 RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628 (800)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCE
T ss_pred HHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEE
Confidence 1234555566555666677899999999999999999999999999999999999999999999998654 48
Q ss_pred EEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc--eeEEEEeeCCc-cHHHHHHHHHHhC
Q 011667 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK--GVVFNLLMDGD-DMIIMEKIERYFD 457 (480)
Q Consensus 382 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~--g~~~~l~~~~~-~~~~~~~i~~~l~ 457 (480)
|++|.+++.|||++.+++||+||+|| ++..+.||+||++|.|+. ..++.|++... +..++....+.+.
T Consensus 629 LlSt~agg~GlNL~~a~~VI~~D~~w--------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVIFDSDW--------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEESSCCS--------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred EEecccccCCCCccccceEEEecCCC--------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 678899999999999975 45566777653 4555665655553
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=2.2e-32 Score=293.46 Aligned_cols=315 Identities=14% Similarity=0.124 Sum_probs=204.3
Q ss_pred CCChHHHHhhcccccCC------------CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHH
Q 011667 122 QKPSKIQAISLPMILTP------------PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~------------~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (480)
..|+|+|..|++.++.+ .+++++++++||||||+++ ++++..+.......++|||||+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 35999999999998761 1268999999999999996 6666665543445699999999999999999
Q ss_pred HHHHHhcccCceeeEeecCCCCCcccccCC-CCCCCeEEEeChHHHHHHHhcCc--cccCceEEEEEcCchhhhh-----
Q 011667 190 VLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLD----- 261 (480)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~----- 261 (480)
.+..++... +.++.+.. ..... ....++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 349 ~f~~f~~~~------v~~~~s~~--~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS------VNGSENTA--GLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQK 420 (1038)
T ss_dssp HHHTTSTTC------SSSSCCCH--HHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHH
T ss_pred HHHHhcccc------cccccCHH--HHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHH
Confidence 998876431 11211111 11111 12357899999999999876532 2456789999999999753
Q ss_pred ---------hheeeeccccHHHH----HHHHHHhcccceeeecc----ccccccccEEEEEEc-----------C-----
Q 011667 262 ---------EVLLFSATFNETVK----NFVTRIVKDYNQLFVKK----EELSLESVKQYKVYC-----------P----- 308 (480)
Q Consensus 262 ---------~~~~~SAT~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~----- 308 (480)
++++||||+..... .....++..+...+... ..... .+...+... .
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHHH
Confidence 37999999863211 01122222221111000 00000 000000000 0
Q ss_pred --------chhHHHHHHHHHHHH-h---cc------cCCcEEEEeCchhhHHHHHHHHHhCC------------CcE-EE
Q 011667 309 --------DELAKVMVIRDRIFE-L---GE------KMGQTIIFVRTKNSASALHKALKDFG------------YEV-TT 357 (480)
Q Consensus 309 --------~~~~k~~~l~~~l~~-~---~~------~~~~~lVf~~s~~~~~~l~~~L~~~~------------~~~-~~ 357 (480)
........+...+.. . .. ...++||||+|+..|..++..|...+ +++ ..
T Consensus 500 ~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 500 AAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp HTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 011122222222222 1 10 23579999999999999999997653 455 45
Q ss_pred ecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEcccc
Q 011667 358 IMGA----------T----------IQ-----------------------------EERDKIVKEFKDGLTQVLISTDVL 388 (480)
Q Consensus 358 l~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~iLv~T~~~ 388 (480)
+|++ + ++ ..|..++++|++|+++|||+|+++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l 659 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF 659 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH
Confidence 5542 2 22 147889999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc----eeEEEEeeCCccHHHHHHHHHHhC
Q 011667 389 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK----GVVFNLLMDGDDMIIMEKIERYFD 457 (480)
Q Consensus 389 ~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~----g~~~~l~~~~~~~~~~~~i~~~l~ 457 (480)
.+|+|+|.+ +|+.+|.| .+...|+||+||++|.+.. |.++.|+.. ...+...+..|.+
T Consensus 660 ltGfDiP~l-~tlylDkp--------l~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~--~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 660 LTGFDAPTL-NTLFVDKN--------LRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL--ERSTIDAITLFGD 721 (1038)
T ss_dssp SSSCCCTTE-EEEEEESC--------CCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC--HHHHHHHHHHTSC
T ss_pred HhCcCcccc-cEEEEccC--------CCccceeehhhccCcCCCCCCCcEEEEEcccc--HHHHHHHHHHHhC
Confidence 999999999 77889999 7788899999999998753 777777642 3333344444443
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=5.9e-32 Score=247.44 Aligned_cols=189 Identities=31% Similarity=0.478 Sum_probs=158.4
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC----CCCCC
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAP 172 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~----~~~~~ 172 (480)
....+|+++++++.+++++.. +||..|+|+|.++++.+++| +++++++|||||||++|++|++..+.. ...++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 98 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQG--KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 98 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred cccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc
Confidence 456789999999999999986 99999999999999999999 999999999999999999999987642 12467
Q ss_pred eEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEEE
Q 011667 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKIL 251 (480)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~l 251 (480)
++||++||++|+.|+++.+..++...++.+...+++......... ..+++|+|+||++|.+++... .+.+.++++|
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---INNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---CCCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 899999999999999999999988777777777666543221111 125799999999999988764 4667899999
Q ss_pred EEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccceeeec
Q 011667 252 VYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFVK 291 (480)
Q Consensus 252 ViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~ 291 (480)
|+||||++.+ ++++||||+++.+..++..++.+|..+.+.
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999865 279999999999999999999888777654
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.2e-31 Score=242.69 Aligned_cols=187 Identities=29% Similarity=0.492 Sum_probs=156.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+|+++++++.+++++.. +||..|+|+|.++++.+++| +++++++|||+|||++|++|++..+.....+.++||++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 4679999999999999986 99999999999999999998 89999999999999999999999887665567999999
Q ss_pred cCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
||++|+.|+++.++++.... ++.+....++....... .......++|+|+||++|..++....+.+.++++||+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH-HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 99999999999999997765 56666665554321110 00011236899999999999998877888999999999999
Q ss_pred hhhh-------------------hheeeeccccHHHHHHHHHHhcccceee
Q 011667 258 HMLD-------------------EVLLFSATFNETVKNFVTRIVKDYNQLF 289 (480)
Q Consensus 258 ~l~~-------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 289 (480)
++.+ ++++||||++..+..++..++.+|..+.
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9864 2789999999999998998988876653
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.7e-32 Score=251.49 Aligned_cols=184 Identities=29% Similarity=0.416 Sum_probs=150.4
Q ss_pred CCCCcccCC--CCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC----CCC
Q 011667 98 SATTFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKA 171 (480)
Q Consensus 98 ~~~~f~~~~--l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~----~~~ 171 (480)
...+|.+++ +++.+++++.. +||..|+|+|.++++.++.| ++++++||||||||++|++|++..+... ..+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEG--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHT--CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred ccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 456778877 99999999987 99999999999999999999 9999999999999999999999876431 246
Q ss_pred CeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcC-ccccCceEE
Q 011667 172 PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKI 250 (480)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~ 250 (480)
.++||++||++|+.|+++.+++++...+..+...+++..... .......+++|+|+||+++..++... .+.+.++++
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA--EAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHH--HHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHH--HHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 689999999999999999999998888877777766553322 11111224789999999999988774 467889999
Q ss_pred EEEcCchhhhh------------------hheeeeccccHHHHHHHHHHhcccc
Q 011667 251 LVYDEADHMLD------------------EVLLFSATFNETVKNFVTRIVKDYN 286 (480)
Q Consensus 251 lViDEah~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~ 286 (480)
||+||||++.+ ++++||||+++.+..+++.++.++.
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999876 3799999999999999988876543
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=2e-31 Score=238.93 Aligned_cols=183 Identities=35% Similarity=0.518 Sum_probs=153.5
Q ss_pred CcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEE
Q 011667 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCI 177 (480)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil 177 (480)
+|+++++++.+++.+.. +||..|+|+|.++++.+++| +++++.+|||+|||++|++|++..+... ..++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCC--CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 69999999999999986 99999999999999999999 9999999999999999999999987542 346789999
Q ss_pred ecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCch
Q 011667 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (480)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 257 (480)
+||++|+.|+++.+.++... +.+...+++...... ......+++|+|+||+++.+++..+.+.+.++++||+||||
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQ--KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHH--HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred ECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHH--HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 99999999999999998765 444455544432211 11111247899999999999998888888999999999999
Q ss_pred hhhh------------------hheeeeccccHHHHHHHHHHhcccceeee
Q 011667 258 HMLD------------------EVLLFSATFNETVKNFVTRIVKDYNQLFV 290 (480)
Q Consensus 258 ~l~~------------------~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 290 (480)
++.+ ++++||||+++.+..++..++.+|..+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9865 37999999999999999999988876643
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=6.3e-30 Score=266.26 Aligned_cols=319 Identities=15% Similarity=0.168 Sum_probs=209.7
Q ss_pred CChHHHHhhcccccC-------CCCccEEEEccCCCccchHhHHHHhhccCCCC----CCCeEEEEecCHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILT-------PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~-------~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~----~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.++|+|.+++..+.. ..+..+|++.+||+|||++++..+...+.... ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 588999999988741 11268999999999999987776655443221 23469999997 7999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcc----c--ccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh---
Q 011667 192 RKMGKHTGITSECAVPTDSTNYV----P--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE--- 262 (480)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~--- 262 (480)
.++... .+.+....++...... . ........++|+|+|++.+..... .+....+++||+||||++.+.
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~~~ 210 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSDNQ 210 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChhhH
Confidence 999765 3333333333211100 0 001112247899999999976542 333457899999999998642
Q ss_pred ------------heeeeccccH-H------HHHHH------------HHHhc----------------------------
Q 011667 263 ------------VLLFSATFNE-T------VKNFV------------TRIVK---------------------------- 283 (480)
Q Consensus 263 ------------~~~~SAT~~~-~------~~~~~------------~~~~~---------------------------- 283 (480)
.+++|||+-. . +..++ ..+..
T Consensus 211 ~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 211 TYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999621 1 00000 00000
Q ss_pred -ccceeeeccccc--cccccEEEEEEcCc---------------------------------------------------
Q 011667 284 -DYNQLFVKKEEL--SLESVKQYKVYCPD--------------------------------------------------- 309 (480)
Q Consensus 284 -~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------------------------------------- 309 (480)
.+..+.-..... .++......+.+..
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~ 370 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKC 370 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHH
Confidence 000000000000 01111111111110
Q ss_pred --------------------------hhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCC
Q 011667 310 --------------------------ELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 362 (480)
Q Consensus 310 --------------------------~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 362 (480)
...|+..+..++.... ....++||||++...++.+...|...++.+..+||++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~ 450 (644)
T 1z3i_X 371 LTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 450 (644)
T ss_dssp HHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred hcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 1122222222222211 2467999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCce--eEE
Q 011667 363 IQEERDKIVKEFKDGLTQ---VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVF 437 (480)
Q Consensus 363 ~~~~r~~~~~~f~~g~~~---iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g--~~~ 437 (480)
++.+|..+++.|++|... +|++|+++++|+|++++++||+||+|| ++..|.|++||++|.|+.. .++
T Consensus 451 ~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w--------np~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW--------NPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS--------SHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC--------CccHHHHHHHhhhhcCCCCceEEE
Confidence 999999999999998754 899999999999999999999999994 6888999999999999754 566
Q ss_pred EEeeCCc-cHHHHHHHH
Q 011667 438 NLLMDGD-DMIIMEKIE 453 (480)
Q Consensus 438 ~l~~~~~-~~~~~~~i~ 453 (480)
.|++... +..++....
T Consensus 523 ~lv~~~tiEe~i~~~~~ 539 (644)
T 1z3i_X 523 RLLSTGTIEEKILQRQA 539 (644)
T ss_dssp EEEETTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHH
Confidence 6777653 333444333
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=3.2e-30 Score=263.34 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=111.5
Q ss_pred HHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 114 ~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+....+|+ .|+++|..++|.+++| + ++.+.||+|||++|++|++..... +.+++||+||++||.|.++++..
T Consensus 71 As~R~lG~-~Pt~VQ~~~ip~LlqG--~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 71 SAKRYLGM-RHFDVQLIGGAVLHEG--K--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HHHHHTCC-CCCHHHHHHHHHHHTT--S--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCcHHHHhhcccccCC--c--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHH
Confidence 33344799 8999999999999998 5 999999999999999999543332 45799999999999999999999
Q ss_pred HhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHH-HHHHhcCc------cccC---ceEEEEEcCchhhh
Q 011667 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFS---RLKILVYDEADHML 260 (480)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~l~ 260 (480)
++..+++++.+++++..... .....+++|+|+||++| ++++..+. +.++ .+.++|+||||.|+
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~----r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAE----RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHH----HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHH----HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999988887764221 11222589999999999 88887652 4577 89999999999987
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=4e-29 Score=259.81 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
.+...+...+........++||||+++..++.++..|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 34445555455555567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
+|+|++++||+++.+..+.- .|..+|+||+||+||.+ +|.|++|+...+
T Consensus 503 lDip~v~lVI~~d~d~~G~p---~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFL---RSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGG---GSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred ccCCCCCEEEEeCCcccCCC---CCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 99999999999998433221 78999999999999985 899999887643
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=214.96 Aligned_cols=165 Identities=38% Similarity=0.674 Sum_probs=143.4
Q ss_pred ccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 011667 295 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+.++.|+++.++....|...+...+.. . ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~-~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGS-I-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTT-S-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHh-C-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 35678999999998887788888774433 3 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHH
Q 011667 375 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 454 (480)
Q Consensus 375 ~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~ 454 (480)
++|..+|||||+++++|+|+|++++||+||+||.+... .+...|+||+||+||.|+.|.+++|+.+. +...+..+++
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~--~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~ 157 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEE--PDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQD 157 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCS--CCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcccc--CCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHH
Confidence 99999999999999999999999999999999876543 57899999999999999999999999865 5778899999
Q ss_pred HhCCcceecC
Q 011667 455 YFDIKVTEVR 464 (480)
Q Consensus 455 ~l~~~~~~~~ 464 (480)
.++..+.+++
T Consensus 158 ~~~~~~~~~~ 167 (175)
T 2rb4_A 158 HFNSSIKQLN 167 (175)
T ss_dssp HHTCCCEEEC
T ss_pred HhcCcccccC
Confidence 9999999987
No 77
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.7e-28 Score=212.26 Aligned_cols=161 Identities=32% Similarity=0.556 Sum_probs=142.6
Q ss_pred ccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhc
Q 011667 297 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 376 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 376 (480)
+..+.|+++.++. ..|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 4567888888764 56888877755443 56799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHh
Q 011667 377 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF 456 (480)
Q Consensus 377 g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l 456 (480)
|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+++.++...++.+++.+
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCC--------SSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCC--------CCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 789999999999999999999999998766778899999999
Q ss_pred CCcceecCCCHH
Q 011667 457 DIKVTEVRNSDE 468 (480)
Q Consensus 457 ~~~~~~~~~~~~ 468 (480)
+..+++++...+
T Consensus 152 ~~~~~~~~~~~~ 163 (172)
T 1t5i_A 152 EVNISELPDEID 163 (172)
T ss_dssp CCCEEECC----
T ss_pred hcchhhCChhhc
Confidence 999999985543
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=6.3e-28 Score=207.51 Aligned_cols=159 Identities=39% Similarity=0.670 Sum_probs=138.3
Q ss_pred cccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 011667 298 ESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
..+.|+++.++....|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 357888888887766888888855443 568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhC
Q 011667 378 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 457 (480)
Q Consensus 378 ~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~ 457 (480)
..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.|++|+++. +...+..++++++
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYS 150 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCC--------SSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHc
Confidence 99999999999999999999999999999 78999999999999999999999999865 6678889999999
Q ss_pred CcceecCCCH
Q 011667 458 IKVTEVRNSD 467 (480)
Q Consensus 458 ~~~~~~~~~~ 467 (480)
..+++++...
T Consensus 151 ~~~~~~~~~~ 160 (165)
T 1fuk_A 151 TQIEELPSDI 160 (165)
T ss_dssp CCCEECCSCC
T ss_pred cCccccCccH
Confidence 9999998543
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=216.75 Aligned_cols=175 Identities=26% Similarity=0.413 Sum_probs=137.6
Q ss_pred HHHhcccceeeeccccccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEe
Q 011667 279 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 358 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l 358 (480)
..++.+|..+.+.........+.+.++.++. ..|...|.+.+.. ..+++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4567778888887777778889999988865 4677777764433 34689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEE
Q 011667 359 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 438 (480)
Q Consensus 359 ~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~ 438 (480)
||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|++|.+++
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p--------~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP--------EEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC--------SSHHHHHHHHTTSCC---CCEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC--------CCHHHHHHHhCccccCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHhCCcceecCC
Q 011667 439 LLMDGDDMIIMEKIERYFDIKVTEVRN 465 (480)
Q Consensus 439 l~~~~~~~~~~~~i~~~l~~~~~~~~~ 465 (480)
|+++.++..++..+.+.++....++|.
T Consensus 157 l~~~~~~~~~~~~l~~~l~~~~~~~p~ 183 (191)
T 2p6n_A 157 FINKACDESVLMDLKALLLEAKQKVPP 183 (191)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTCCCCH
T ss_pred EEcCchhHHHHHHHHHHHHHccCcCCH
Confidence 999877778888999988777766653
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.5e-27 Score=204.67 Aligned_cols=158 Identities=32% Similarity=0.587 Sum_probs=141.4
Q ss_pred ccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 011667 295 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
....++.|.++.++. ..|...|...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 345668888888764 56788877755443 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHH
Q 011667 375 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 454 (480)
Q Consensus 375 ~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~ 454 (480)
++|..+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|++|.+++|+.+. +..+++.+++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~ 152 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLP--------LEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEE 152 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCC--------SSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHH
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCC--------CCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999 78999999999999999999999999854 6778899999
Q ss_pred HhCCcceecC
Q 011667 455 YFDIKVTEVR 464 (480)
Q Consensus 455 ~l~~~~~~~~ 464 (480)
+++..+.+++
T Consensus 153 ~~~~~~~~~~ 162 (163)
T 2hjv_A 153 YIGFEIQKIE 162 (163)
T ss_dssp HHTSCCEECC
T ss_pred HHCCCcCccC
Confidence 9999988764
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=5.7e-28 Score=251.07 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 011667 312 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 391 (480)
Q Consensus 312 ~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 391 (480)
.+...+...+......+.++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 34444545455555567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCc
Q 011667 392 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 444 (480)
Q Consensus 392 ldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~ 444 (480)
+|+|++++||+++.+..+.- .+..+|+||+||+||. ..|.|++|+.+.+
T Consensus 509 lDip~v~lVi~~d~d~~G~p---~s~~~~iQr~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFL---RSERSLIQTIGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTT---TSHHHHHHHHHTTTTS-TTCEEEEECSSCC
T ss_pred cccCCCCEEEEeCcccccCC---CCHHHHHHHhCcccCC-CCCEEEEEEeCCC
Confidence 99999999999998433321 7899999999999998 7999999987653
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.4e-26 Score=207.22 Aligned_cols=157 Identities=31% Similarity=0.510 Sum_probs=136.4
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
+..+.++ ...|+..+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|
T Consensus 8 ~~~~~~~-~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 8 EEAVPAP-VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CEEEECC-TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeEEeCC-HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 3444443 456777777744432 5689999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcce
Q 011667 382 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 461 (480)
Q Consensus 382 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~ 461 (480)
||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++. +...+..+++.++..+.
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~ 155 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFK 155 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCC--------SSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSSCCE
T ss_pred EEecChhhcCCCCccCcEEEECCCC--------cCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcCcCe
Confidence 9999999999999999999999999 78999999999999999999999999864 67788999999999999
Q ss_pred ecC-CCHHHH
Q 011667 462 EVR-NSDEDF 470 (480)
Q Consensus 462 ~~~-~~~~~~ 470 (480)
.++ +...++
T Consensus 156 ~~~~~~~~ei 165 (212)
T 3eaq_A 156 RVNPPTPEEV 165 (212)
T ss_dssp ECCCCCHHHH
T ss_pred ecCCCCHHHH
Confidence 987 555544
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=205.93 Aligned_cols=162 Identities=30% Similarity=0.487 Sum_probs=127.8
Q ss_pred cccccccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 011667 294 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
.....++.|.++.++. ..|...|.+.+... ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3456788999888864 46788887755543 357899999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHH
Q 011667 374 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 453 (480)
Q Consensus 374 f~~g~~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~ 453 (480)
|++|+.+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.|++|+++. +...++.+.
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~ 162 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLL 162 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCC--------SSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHH
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHH
Confidence 999999999999999999999999999999999 78999999999999999999999999865 556778888
Q ss_pred HHhCCcceecCCC
Q 011667 454 RYFDIKVTEVRNS 466 (480)
Q Consensus 454 ~~l~~~~~~~~~~ 466 (480)
+.++....+++..
T Consensus 163 ~~l~~~~~~~~~~ 175 (185)
T 2jgn_A 163 DLLVEAKQEVPSW 175 (185)
T ss_dssp HHHHHTTCCCCHH
T ss_pred HHHHhccCCCCHH
Confidence 8887777777643
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=4.2e-26 Score=213.47 Aligned_cols=159 Identities=31% Similarity=0.503 Sum_probs=136.7
Q ss_pred cEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 011667 300 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 379 (480)
Q Consensus 300 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 379 (480)
+.++++.+.. ..|+..+.+.+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 5677777665 46888877744433 37899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCc
Q 011667 380 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 459 (480)
Q Consensus 380 ~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~ 459 (480)
+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.|++|++.. +..++..+++.++..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p--------~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRR 150 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCC--------SSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHHTCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCC--------CCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHhCCc
Confidence 999999999999999999999999999 78999999999999999999999999864 677889999999999
Q ss_pred ceecC-CCHHHH
Q 011667 460 VTEVR-NSDEDF 470 (480)
Q Consensus 460 ~~~~~-~~~~~~ 470 (480)
+..++ +...++
T Consensus 151 ~~~~~~~~~~ei 162 (300)
T 3i32_A 151 FKRVNPPTPEEV 162 (300)
T ss_dssp CEECCCCCHHHH
T ss_pred ceEeCCCCHHHH
Confidence 99887 454444
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=3.4e-27 Score=203.89 Aligned_cols=155 Identities=29% Similarity=0.517 Sum_probs=136.1
Q ss_pred ccEEEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 299 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 299 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.+.|.++.++....|...+...+.. . ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~-~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ-P-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4566666666546677777664433 2 4578999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCC
Q 011667 379 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 458 (480)
Q Consensus 379 ~~iLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~ 458 (480)
.+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.+++|+... +...+..++++++.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMP--------RSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999 78899999999999999999999999765 56678889999988
Q ss_pred cceecC
Q 011667 459 KVTEVR 464 (480)
Q Consensus 459 ~~~~~~ 464 (480)
.+....
T Consensus 152 ~~~~~~ 157 (170)
T 2yjt_D 152 PIKARV 157 (170)
Confidence 887765
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=3.9e-22 Score=203.30 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=67.9
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEE--EccccccCCCCCC----CCEE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI--STDVLARGFDQQQ----VNLI 400 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv--~T~~~~~Gldi~~----v~~V 400 (480)
..+++|||++|...++.++..|.. .. ...++.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 467899999999999999988865 33 3445553 46888999999865 6776 8899999999998 8999
Q ss_pred EEccCCCCCCCCC------------CCC----------cccccccccccccCCCceeEEEEe
Q 011667 401 VNYDPPVKHGKHL------------EPD----------CEVYLHRIGRAGRFGRKGVVFNLL 440 (480)
Q Consensus 401 i~~~~p~~~~~~~------------~~s----------~~~y~qr~GR~gR~g~~g~~~~l~ 440 (480)
|++++|.-...+. ..+ +..+.|.+||+.|...+-.+++++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 9999996543210 000 123468999999976554455555
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=6.2e-21 Score=195.24 Aligned_cols=131 Identities=21% Similarity=0.092 Sum_probs=96.4
Q ss_pred CChHHHHhhcccc----cCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 123 KPSKIQAISLPMI----LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~i----l~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.|+|.|.+++..+ ..| +++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 5899999877644 456 89999999999999999999997 35689999999999999999998887665
Q ss_pred CceeeEeecCCCC--Cc-------------ccccC----------------------------------CCCCCCeEEEe
Q 011667 199 GITSECAVPTDST--NY-------------VPISK----------------------------------RPPVTAQVVIG 229 (480)
Q Consensus 199 ~~~~~~~~~~~~~--~~-------------~~~~~----------------------------------~~~~~~~I~v~ 229 (480)
++++..+.|.... +. ...+. .....++|+|+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 6665544331100 00 00000 01125799999
Q ss_pred ChHHHHHHHhcCcccc-CceEEEEEcCchhhhh
Q 011667 230 TPGTIKKWMSAKKLGF-SRLKILVYDEADHMLD 261 (480)
Q Consensus 230 Tp~~l~~~l~~~~~~~-~~~~~lViDEah~l~~ 261 (480)
||+.|++......+.+ ....++||||||.|.+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999988765443333 4678999999999877
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=5.5e-22 Score=178.49 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=100.0
Q ss_pred cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC---CCCCCeEEEEecCHHHHHH-HHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCICPTRELAIQ-NLEVLRKM 194 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~---~~~~~~~lil~Pt~~La~q-~~~~~~~~ 194 (480)
.+...|+++|.++++.++.+ +++++.+|||+|||++|+++++..+.. ...+.++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEG--KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcC--CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45557999999999999998 899999999999999999999876532 1235689999999999999 77888887
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCc------cccCceEEEEEcCchhhhh
Q 011667 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK------LGFSRLKILVYDEADHMLD 261 (480)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~lViDEah~l~~ 261 (480)
... ++.+....++..... ........++|+|+||++|..++.... ..+.++++||+||||++..
T Consensus 107 ~~~-~~~v~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKI--SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HTT-TSCEEECCC---CCC--CHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred hcc-CceEEEEeCCcccch--hHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 654 455555544432221 111111247899999999999887643 5678899999999998753
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=174.54 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=110.4
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC--CCCeEEEEecCHHHHHHHHHHHHHHhc-cc
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK-HT 198 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~-~~ 198 (480)
..++++|.++++.+..| +++++.||||||||+++.++++..+.... ...++++++|+++|+.|+.+.+..... ..
T Consensus 60 ~p~~~~q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 60 LPVKKFESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred CChHHHHHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34789999999999999 99999999999999998888887654322 245899999999999999888876533 22
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh-hh----------------
Q 011667 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM-LD---------------- 261 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~---------------- 261 (480)
+..+...... ........++|+|+||++|.+++.. .+.++++||+||||++ ++
T Consensus 138 ~~~~g~~~~~-------~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 138 GKSCGYSVRF-------ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TSSEEEEETT-------EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred CceEEEeech-------hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 2222221111 1111123588999999999999876 4789999999999985 22
Q ss_pred --hheeeeccccHHHHHHHHHHhcc
Q 011667 262 --EVLLFSATFNETVKNFVTRIVKD 284 (480)
Q Consensus 262 --~~~~~SAT~~~~~~~~~~~~~~~ 284 (480)
++++||||++... +..++.+
T Consensus 208 ~~~~il~SAT~~~~~---~~~~~~~ 229 (235)
T 3llm_A 208 EVRIVLMSATIDTSM---FCEYFFN 229 (235)
T ss_dssp TSEEEEEECSSCCHH---HHHHTTS
T ss_pred CCeEEEEecCCCHHH---HHHHcCC
Confidence 3899999999776 4445543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=4e-21 Score=180.12 Aligned_cols=140 Identities=19% Similarity=0.112 Sum_probs=109.2
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.|+|+|.++++.++.+ ++.++++|||+|||+++++++...+.. ...++||++||++|+.||.+.+.+++......+
T Consensus 113 ~l~~~Q~~ai~~~l~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHH--SEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhc--CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 7999999999999987 788999999999999998888776543 234899999999999999999999876555555
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh--------------hheeeec
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------------EVLLFSA 268 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~--------------~~~~~SA 268 (480)
..+.++..... ......+|+|+||+++... ....+.++++||+||||++.. +++++||
T Consensus 189 ~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 189 KKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp EECSTTCSSTT-----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECS
T ss_pred EEEeCCCcchh-----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeC
Confidence 55554443221 2224578999999987543 234577899999999999765 3789999
Q ss_pred cccHHH
Q 011667 269 TFNETV 274 (480)
Q Consensus 269 T~~~~~ 274 (480)
|++...
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 987543
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.82 E-value=2.4e-19 Score=184.82 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--cccccCCCCCC--CCEEEE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST--DVLARGFDQQQ--VNLIVN 402 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T--~~~~~Gldi~~--v~~Vi~ 402 (480)
..+++|||++|....+.++..|.. .... ...+++...+..+++.|+ +...||+++ ..+++|||+|+ .+.||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 467899999999999999988862 2222 555566678999999999 888899997 49999999996 789999
Q ss_pred ccCCCCCCCCC------------CC---------CcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcce
Q 011667 403 YDPPVKHGKHL------------EP---------DCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 461 (480)
Q Consensus 403 ~~~p~~~~~~~------------~~---------s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~ 461 (480)
.++|+-..+.. .. .+....|.+||+-|...+-.+++++ |.+. ..+.+.+.. +.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll---D~R~--~~~~~~LP~-~~ 596 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL---DKRA--GQFRKFIPD-MK 596 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE---CGGG--GGGGGGSTT-CE
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEE---ccch--HHHHHhCCc-hh
Confidence 99996543210 00 1112268999999976655555565 2332 444444433 33
Q ss_pred ecCCCHHHHHHHHHHc
Q 011667 462 EVRNSDEDFKAALKAA 477 (480)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (480)
+-.....++.+-+.++
T Consensus 597 ~~~~~~~~~~~f~~~~ 612 (620)
T 4a15_A 597 KTSDPASDIYNFFISA 612 (620)
T ss_dssp EESCHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHhCh
Confidence 3334466666666543
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=7.9e-19 Score=162.26 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEc
Q 011667 309 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLIST 385 (480)
Q Consensus 309 ~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-iLv~T 385 (480)
....|+..+.+.+........++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3567888888877776667789999999999999999999875 99999999999999999999999998 666 78999
Q ss_pred cccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcee--EEEEeeCCc
Q 011667 386 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDGD 444 (480)
Q Consensus 386 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~--~~~l~~~~~ 444 (480)
+++++|+|++++++||+||+|| ++..|.||+||++|.|+.+. ++.|++...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~w--------np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWW--------NPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCS--------CTTTC--------------CCEEEEEEETTS
T ss_pred hhhcCCcCcccCCEEEEECCCC--------ChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999995 57779999999999998765 466777553
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=1.5e-18 Score=157.74 Aligned_cols=124 Identities=23% Similarity=0.167 Sum_probs=97.8
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCce-
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT- 201 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~- 201 (480)
.|+++|.++++.++.+ +++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~--~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTT--SEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhC--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 6999999999999988 789999999999999988877654 458999999999999999988874 444
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhhh-------------heeeec
Q 011667 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-------------VLLFSA 268 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-------------~~~~SA 268 (480)
+....+... ...+|+|+||+.+...... ...++++|||||||++.+. .+++||
T Consensus 161 v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~~l~LSA 226 (237)
T 2fz4_A 161 VGEFSGRIK-----------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTA 226 (237)
T ss_dssp EEEESSSCB-----------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHHHHHHTCCCSEEEEEEE
T ss_pred EEEEeCCCC-----------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHHHHHHhccCCEEEEEec
Confidence 444433321 1368999999998776542 1245899999999998652 678888
Q ss_pred cccH
Q 011667 269 TFNE 272 (480)
Q Consensus 269 T~~~ 272 (480)
|+..
T Consensus 227 Tp~r 230 (237)
T 2fz4_A 227 TFER 230 (237)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8764
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.71 E-value=2.4e-08 Score=102.80 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=59.9
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccc--hHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCc
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKT--TCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKT--l~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
++.|+.+++.++.+ +.+++.|++|+||| ++++++.+..+.. ..+.++++++||..+|.++.+.+..++..+++
T Consensus 151 ~~~Q~~Ai~~~l~~--~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTR--RISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTB--SEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 78999999999988 99999999999999 6677777765532 23568999999999999998888776655443
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.25 E-value=1.1e-05 Score=83.79 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=52.5
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.+.+-|.+|+..++... .-.||+||+|+|||.+..-.+.+.+.. +.++|+++||...+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~-~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCS-SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCC-CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 46788999999988651 367999999999998744444444432 568999999999999998888654
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.21 E-value=1.7e-05 Score=82.63 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=53.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.+++-|.+++... + ..++|.|+.|||||.+.+--+...+.. .....++|++++|+..+.++.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~~--~--~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAAP--R--SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCC--C--CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 5789999999743 3 579999999999998754444444433 2344589999999999999999988764
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.00 E-value=7.5e-05 Score=69.05 Aligned_cols=127 Identities=16% Similarity=0.094 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 011667 310 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 389 (480)
Q Consensus 310 ~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~ 389 (480)
...|+..|..++....+.+.++|||++..+..+.+..+|...++++..+.|.....++ +. .+....+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 4678888888777777788899999999999999999999999999999998554322 11 245555555566666
Q ss_pred cCCC-----CCCCCEEEEccCCCCCCCCCCCCcccccccccccccC----CCceeEEEEeeCCccHHH
Q 011667 390 RGFD-----QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF----GRKGVVFNLLMDGDDMII 448 (480)
Q Consensus 390 ~Gld-----i~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~----g~~g~~~~l~~~~~~~~~ 448 (480)
-|++ ....+.||.||..|++.. ..+|.+-|+.|. +++-.++.|++...-...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~-------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQ-------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTS-------HHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCC-------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6675 678999999999986532 246766666665 245578899987653333
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.98 E-value=1.7e-05 Score=81.96 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
+..+++.|..|+..++.+ ..+++.||+|+|||.... .++..+... .+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~--~~~li~GppGTGKT~~~~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTC--SEEEEECCTTSCHHHHHH-HHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcC--CCeEEECCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 345789999999998876 789999999999998643 333333221 3568999999999999988887654
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.89 E-value=8.4e-06 Score=81.14 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=50.2
Q ss_pred cCCCCChHHHHhhcccccCC---CCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 119 MKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 119 ~~~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
+.|..+++-|.+++..++.. ....+++.|+.|||||.. +..++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 57788999999999876532 114899999999999975 334444443322 137899999998777665544
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.83 E-value=1.8e-05 Score=80.66 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=48.4
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (480)
.+++.|..++..++.+ +.+++.|+.|+|||.. +..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~--~~~~I~G~pGTGKTt~-i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGH--RLVVLTGGPGTGKSTT-TKAVADLAES--LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTC--SEEEEECCTTSCHHHH-HHHHHHHHHH--TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC--CEEEEEcCCCCCHHHH-HHHHHHHHHh--cCCeEEEecCcHHHHHHhHhh
Confidence 4789999999999987 8999999999999975 3333333332 356799999999888776553
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.3e-05 Score=82.84 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
..+++.|..|+..++.+ ..++|.||+|+|||....- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR--PLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTC--SEEEEECSTTSSHHHHHHH-HHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHH-HHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35679999999999886 7789999999999986333 33332211 3458999999999999999888765
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.99 E-value=0.00091 Score=64.87 Aligned_cols=85 Identities=24% Similarity=0.215 Sum_probs=54.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
+-.++.|+.|+|||... .+.+.. ...+|++||++++..+.+.+.+. +. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~~---------- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF----EEDLILVPGRQAAEMIRRRANAS----GI--------IV---------- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT----TTCEEEESCHHHHHHHHHHHTTT----SC--------CC----------
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------cc----------
Confidence 56789999999999852 222221 35799999999998877765322 10 00
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 259 (480)
....-|.|.++++. +.........++||||||-.+
T Consensus 212 --~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 212 --ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp --CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred --cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 01234778877653 222222234789999999854
No 103
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.81 E-value=0.0015 Score=69.11 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=53.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
.+++.|..|+..++.+ ...++.||+|+|||.+. ..++..+... .+.++|+++||...+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~ti-~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTS-ATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTS--SEEEEECCTTSCHHHHH-HHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccC--CeEEEEcCCCCCHHHHH-HHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4688999999998887 78999999999999863 3344433321 3568999999999999988887654
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.63 E-value=0.0033 Score=60.15 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=54.5
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
.++|+|...+..+... +.+++..+-+.|||.+....++..+.. ..+..++++.|++..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~--R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHS--SEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccC--cEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5899999988766433 678999999999998766555543322 24568999999999998888888776644
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.0061 Score=53.64 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=50.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (480)
.-.++.|++|+|||.+.+- ++.++.. .+.+++++.|...- . . ...+....++ .
T Consensus 13 ~i~litG~mGsGKTT~ll~-~~~r~~~--~g~kVli~~~~~d~--r-~--~~~i~srlG~-----------~-------- 65 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR-RLHRLEY--ADVKYLVFKPKIDT--R-S--IRNIQSRTGT-----------S-------- 65 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH-HHHHHHH--TTCCEEEEEECCCG--G-G--CSSCCCCCCC-----------S--------
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHHh--cCCEEEEEEeccCc--h-H--HHHHHHhcCC-----------C--------
Confidence 6789999999999987433 3333322 24578888886521 0 0 0011111110 0
Q ss_pred CCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchh
Q 011667 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (480)
Q Consensus 221 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 258 (480)
-..+.+.+...++..+... ..-.++++|||||++.
T Consensus 66 --~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 66 --LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQF 100 (223)
T ss_dssp --SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGG
T ss_pred --ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCcc
Confidence 0124456777777777652 2234588999999985
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.43 E-value=0.0033 Score=53.75 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=25.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
+-.++.|++|+|||...+- ++..... .+.+++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~-~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLS-FVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHH-HHHHHHH--TTCEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHHH--CCCeEEEEeecc
Confidence 6788999999999987433 3322221 244788988884
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.40 E-value=0.0037 Score=53.70 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=26.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
+-.++.|++|||||.+.+- ++.+.. ..+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~-~a~r~~--~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIR-RIRRAK--IAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHHH--HTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHH--HCCCEEEEEEecc
Confidence 6789999999999987443 333332 2356899999984
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.35 E-value=0.0066 Score=62.15 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=55.1
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhccc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (480)
.++|+|...+..+-.. +.+++..+-|+|||.+....++..+... ++..++++.|++..|..+...++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~--r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHC--SEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccc--cEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4799999988766333 7799999999999987655444433332 35589999999999999888888776544
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.31 E-value=0.0034 Score=65.52 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=52.9
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHhc
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (480)
.+++-|.+++... + ..++|.|+.|||||.+..--+...+.. .....++|+|+.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~--~--~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T--GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--S--SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--C--CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 3679999999753 3 679999999999998744434433332 23456899999999999999998887643
No 110
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.16 E-value=0.0056 Score=68.24 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=54.4
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCC---CCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL---KAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~---~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.+|+-|.++|..- + ++++|.|..|||||.+.+-=++..+.... ...++|++++|+..|..+.+.+....
T Consensus 10 ~~t~eQ~~~i~~~--~--~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--G--QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--S--SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--C--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4789999999754 4 79999999999999975544555554432 45689999999999999998887743
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.15 E-value=0.0056 Score=64.36 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=52.9
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCC-CCCCCeEEEEecCHHHHHHHHHHHHHHh
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (480)
.+++-|.+++... + ..++|.|..|||||.+..--+...+.. .....++|+|+.|+..|.++.+++..+.
T Consensus 11 ~Ln~~Q~~av~~~--~--g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--E--GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--C--CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5789999999763 3 579999999999998744444444432 3345689999999999999998887763
No 112
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.13 E-value=0.025 Score=59.47 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=79.8
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
..+..+....|.....-.+......+.+++|.++++.-+..+++.+.. .++.+..+||+++..+|...++.+.+|.
T Consensus 392 ~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~ 471 (780)
T 1gm5_A 392 RLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ 471 (780)
T ss_dssp CEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 344555566665554433444444678999999999988888777654 3799999999999999999999999999
Q ss_pred CcEEEEcc-ccccCCCCCCCCEEEEccCC
Q 011667 379 TQVLISTD-VLARGFDQQQVNLIVNYDPP 406 (480)
Q Consensus 379 ~~iLv~T~-~~~~Gldi~~v~~Vi~~~~p 406 (480)
.+|+|+|. .+...+.+.++.+||.-..-
T Consensus 472 ~~IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 472 IDVVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred CCEEEECHHHHhhhhhccCCceEEecccc
Confidence 99999996 44567888899998864443
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.97 E-value=0.0056 Score=53.13 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=26.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
+-.++.|++|||||...+--+..... .+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccC
Confidence 66779999999999874444433332 2558999999864
No 114
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.53 E-value=0.03 Score=53.98 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHH-HhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ-AISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q-~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
....+|+++.-.....+.+.... . .+.. ...+..+. ...+.+++.||+|+|||..
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~--~--~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIV--I--LPSLRPELFTGLR-APARGLLLFGPPGNGKTML 164 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHT--H--HHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHH--H--HhccCHHHhcccC-CCCceEEEECCCCCCHHHH
Confidence 34567888877777777776521 0 0110 00111111 1127899999999999975
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.24 E-value=0.018 Score=49.85 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=26.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
.-.++.|+.|+|||...+--+ .+... .+.+++|+.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~-~r~~~--~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRL-RRGIY--AKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHHHH--TTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCCceEEEEeccC
Confidence 778999999999998643333 33322 2457899999764
No 116
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.22 E-value=0.082 Score=51.31 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=75.1
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~ 380 (480)
.+..+....|.....-.+........++||.++++.-+..+++.+.. .++.+..++|+.+..++...++.+..|..+
T Consensus 40 lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~ 119 (414)
T 3oiy_A 40 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 119 (414)
T ss_dssp ECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC
Confidence 44455566665543332333335678999999999999999999988 588999999999999998899999999999
Q ss_pred EEEEccccc----cCCCCCCCCEEEE
Q 011667 381 VLISTDVLA----RGFDQQQVNLIVN 402 (480)
Q Consensus 381 iLv~T~~~~----~Gldi~~v~~Vi~ 402 (480)
|+|+|.-.- .-++...+++||.
T Consensus 120 Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 120 ILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EEEECHHHHHHHHHHhccccccEEEE
Confidence 999995321 1245567888875
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.18 E-value=0.012 Score=50.10 Aligned_cols=38 Identities=16% Similarity=-0.069 Sum_probs=26.8
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
++-.++.|++|||||.-.+-.+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 3788999999999996533333333332 4579999887
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.11 E-value=0.017 Score=50.66 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=28.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
+-.++.|++|||||...+--+..... .+.+++++-|...
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecCC
Confidence 77899999999999875444444433 3568999988763
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.98 E-value=0.027 Score=57.51 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=68.5
Q ss_pred CChHHHHhhcccccCCCCccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCcee
Q 011667 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
.+|.-|.+++..++.-.....++.|+-|.|||.+..+.+-.. .. .++|..|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~-----~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG-----RAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS-----CEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh-----CcEEECCCHHHHHHHHH----HhhC-----
Confidence 578899999987776322457999999999997655544433 21 36888899876654333 2211
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEEEEEcCchhhhh----------hheeeecccc
Q 011667 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD----------EVLLFSATFN 271 (480)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----------~~~~~SAT~~ 271 (480)
.|-+..|..+.. .....++||||||=.+-. ..++||.|..
T Consensus 240 ----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~pll~~ll~~~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPAPLLHQLVSRFPRTLLTTTVQ 289 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCHHHHHHHHTTSSEEEEEEEBS
T ss_pred ----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCHHHHHHHHhhCCeEEEEecCC
Confidence 033345655432 133578999999987533 1688888864
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.55 E-value=0.019 Score=47.07 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.9
Q ss_pred CCCCccEEEEccCCCccchH
Q 011667 137 TPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~ 156 (480)
.| +.+++.||+|+|||..
T Consensus 35 ~g--~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HG--QFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CC--SEEEEESSSTTTTCHH
T ss_pred CC--CEEEEECCCCCCHHHH
Confidence 46 8899999999999974
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.049 Score=50.58 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=20.7
Q ss_pred ccCCCCccEEEEccCCCccchHhHHHHhhcc
Q 011667 135 ILTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
+..+...++++.||+|+|||.+.- .++..+
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 334445789999999999998633 334444
No 122
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.09 E-value=0.22 Score=54.96 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=78.3
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcC
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
...+..+....|........+.....+.+++|.|++...+..+++.+.. .++.+..+++..+..++...++.+..|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 4455666667776554433334444667999999999999888887764 367899999999999999999999999
Q ss_pred CCcEEEEcc-ccccCCCCCCCCEEEE
Q 011667 378 LTQVLISTD-VLARGFDQQQVNLIVN 402 (480)
Q Consensus 378 ~~~iLv~T~-~~~~Gldi~~v~~Vi~ 402 (480)
..+|+|+|. .+...+.+.++.+||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 999999994 5556688888888774
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.79 E-value=0.27 Score=42.50 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=14.2
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999974
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.76 E-value=0.057 Score=47.74 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 53 ~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999975
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.75 E-value=0.082 Score=49.72 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=22.4
Q ss_pred hHHHHhhccccc----CCC-CccEEEEccCCCccchHhHH
Q 011667 125 SKIQAISLPMIL----TPP-YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 125 ~~~Q~~~i~~il----~~~-~~~~lv~a~TGsGKTl~~~l 159 (480)
.|+|..++..+. +|. .+.+++.||.|+|||.....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 466665554433 332 23589999999999976433
No 126
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.73 E-value=0.21 Score=54.79 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=77.4
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLT 379 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 379 (480)
..+..+....|.....-.+......+.++||.++++.-+..+++.+.. .++.+..+||+++..+|...++.+..|..
T Consensus 96 vlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~ 175 (1104)
T 4ddu_A 96 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY 175 (1104)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 345556666776654444444445778999999999999999999988 47799999999999888889999999999
Q ss_pred cEEEEccccc-c---CCCCCCCCEEEEc
Q 011667 380 QVLISTDVLA-R---GFDQQQVNLIVNY 403 (480)
Q Consensus 380 ~iLv~T~~~~-~---Gldi~~v~~Vi~~ 403 (480)
+|+|+|.-.- . -++..++.+||.-
T Consensus 176 ~IlV~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp SEEEEEHHHHHHSHHHHHTSCCSEEEES
T ss_pred CEEEECHHHHHHHHHhhcccCcCEEEEe
Confidence 9999995321 1 1455678888853
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.65 E-value=0.08 Score=50.63 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.2
Q ss_pred CccEEEEccCCCccchH
Q 011667 140 YRNLIAQARNGSGKTTC 156 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~ 156 (480)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 37899999999999985
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.48 E-value=0.12 Score=48.36 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 38 ~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SSEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6899999999999975
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.10 E-value=0.34 Score=45.13 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCC-ccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPY-RNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~-~~~lv~a~TGsGKTl~ 156 (480)
+.+|+++--.+...+.+... ++ .+.. ..+++.+|+|+|||..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~--------l~--------~~~~~~~~L~~G~~G~GKT~l 64 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSI--------TS--------KGKIPHIILHSPSPGTGKTTV 64 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHH--------HH--------TTCCCSEEEECSSTTSSHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHH--------HH--------cCCCCeEEEeeCcCCCCHHHH
Confidence 45677777777777666541 11 2211 3467778899999985
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.73 E-value=0.23 Score=47.52 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.4
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999853
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.27 E-value=0.091 Score=49.41 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=27.9
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+.+|+++--....++.+.... ...... ......+++.||+|+|||..
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l-----~~~~~~------~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFI-----AAAKKR------NECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHH-----HHHHHT------TSCCCCEEEECSTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-----HHHHhc------CCCCCeEEEECcCCCCHHHH
Confidence 346777766666666665310 000000 11125799999999999985
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.11 E-value=0.17 Score=49.51 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=22.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
+.+++.||+|+|||..+. .+...+.....+..++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH
Confidence 689999999999998532 23333322222334555543
No 133
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.02 E-value=0.41 Score=43.25 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 68999999999999853
No 134
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.99 E-value=2.2 Score=36.84 Aligned_cols=97 Identities=11% Similarity=0.205 Sum_probs=66.8
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.....-.+..... ...++||.|+++..+..+++.+... ++.+..++|+.+...+.. .+
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~ 130 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VL 130 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HH
Confidence 445556666676544333333322 2348999999999999988887654 788999999988765543 34
Q ss_pred hcCCCcEEEEccc-c-----ccCCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDV-L-----ARGFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~-~-----~~Gldi~~v~~Vi~ 402 (480)
..+..+|+|+|.- + ...+++..+++||.
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 5577799999952 1 23567788888885
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.81 E-value=0.1 Score=49.90 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999853
No 136
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.62 E-value=5 Score=35.17 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-cCCCCCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA-RGFDQQQ 396 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~~-~Gldi~~ 396 (480)
...++||.++++..+..+++.+.. .++.+..++|+.+...+...+. . ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888777654 4889999999998776655443 2 468999995 222 3457888
Q ss_pred CCEEEE
Q 011667 397 VNLIVN 402 (480)
Q Consensus 397 v~~Vi~ 402 (480)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888885
No 137
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.61 E-value=4.3 Score=34.36 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc------ccCCcEEEEeCchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG------EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~------~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.....-.+.... ....++||.++++..+..+++.+... ++.+..++|+.........+.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 118 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL-- 118 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH--
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh--
Confidence 45556667777655333233332 24568999999999999999998765 467889999887654433332
Q ss_pred hcCCCcEEEEccc-----c-ccCCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDV-----L-ARGFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~-----~-~~Gldi~~v~~Vi~ 402 (480)
...+|+|+|.- + ...+++..+++||.
T Consensus 119 --~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 119 --RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp --HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred --CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 24689999952 1 23566778888885
No 138
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.49 E-value=2.4 Score=37.10 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=58.7
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+....|.....-.+..... ...++||.++++..+..+++.+... +..+..++|+..... ....+.
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~ 146 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQ 146 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHh
Confidence 445566677776553333333322 4568999999999999998888654 577888888765433 233455
Q ss_pred cCCCcEEEEcc-----ccc-cCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTD-----VLA-RGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~-----~~~-~Gldi~~v~~Vi~ 402 (480)
.+..+|+|+|. .+. ..+++..+++||.
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 67789999993 233 3466777888875
No 139
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.44 E-value=2 Score=36.60 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=82.9
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.....-.+.... ....++||.++++..+..+++.+... +..+..++|+.........+
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 119 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL--- 119 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT---
T ss_pred EEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc---
Confidence 34555566666543332233322 13457999999999999988887653 67889999998765543222
Q ss_pred hcCCCcEEEEccc-----cc-cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHH
Q 011667 375 KDGLTQVLISTDV-----LA-RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 448 (480)
Q Consensus 375 ~~g~~~iLv~T~~-----~~-~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~ 448 (480)
.+..+|+|+|.- +. ..+++.++++||.-..-.. .+ ..|...+.+..+.-.++.-+++++..-....
T Consensus 120 -~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~------~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 191 (206)
T 1vec_A 120 -DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL------LS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 191 (206)
T ss_dssp -TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH------TS-TTTHHHHHHHHHHSCTTCEEEEEESCCCHHH
T ss_pred -CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh------Hh-hCcHHHHHHHHHhCCccceEEEEEeeCCHHH
Confidence 356789999952 22 2456778888875222100 00 1122222222221122345566665555556
Q ss_pred HHHHHHHhCCcc
Q 011667 449 MEKIERYFDIKV 460 (480)
Q Consensus 449 ~~~i~~~l~~~~ 460 (480)
.+.+.++++.++
T Consensus 192 ~~~~~~~l~~p~ 203 (206)
T 1vec_A 192 QKFMNSHLEKPY 203 (206)
T ss_dssp HHHHHHHCSSCE
T ss_pred HHHHHHHcCCCe
Confidence 666677766543
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.08 E-value=0.85 Score=44.26 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=33.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCcee
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITS 202 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~ 202 (480)
..++++|++|+|||+...- +..++.. .+.+++++. |.|.-+ .+.+..++...++.+
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEE
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcE
Confidence 6789999999999986333 2233332 245666665 556544 344555665555543
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.99 E-value=0.43 Score=46.28 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=30.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHHHHHHHHHHHHhcccCc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGI 200 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~ 200 (480)
..+++.|++|+|||+...-.+ ..+.. .+.+++++. +.|.-+. +.+..++...++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv 153 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGYKVGLVAADVYRPAAY---DQLLQLGNQIGV 153 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTCCEEEEEECCSCHHHH---HHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCCeEEEEecCccchhHH---HHHHHHHHhcCC
Confidence 688999999999998533322 22222 244666665 4454332 334444444444
No 142
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.91 E-value=0.94 Score=44.64 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=39.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (480)
....+.+-||||||++.. .++... +..+|||+|+...|.|++..++.+...
T Consensus 15 ~~~~l~g~~gs~ka~~~a-~l~~~~-----~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVA-EIAERH-----AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp CEEEEECCCTTHHHHHHH-HHHHHS-----SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CeEEEeCCCchHHHHHHH-HHHHHh-----CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 678999999999998522 222221 335899999999999999999988653
No 143
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.87 E-value=5.3 Score=35.26 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=63.9
Q ss_pred EEEEcCchhHHHHHHHHHHHH-hc--ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMVIRDRIFE-LG--EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~-~~--~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+....|.....-.+.. .. ....++||.++++..+..+++.+... ++.+..++|+.....+...+
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 158 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---- 158 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----
Confidence 345556666665443222222 11 13457999999999998888777654 78999999998876554333
Q ss_pred cCCCcEEEEccc-----c--ccCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTDV-----L--ARGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~~-----~--~~Gldi~~v~~Vi~ 402 (480)
.+..+|+|+|.- + ..++++..+++||.
T Consensus 159 ~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 159 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 256789999942 1 24577888888885
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.58 E-value=0.42 Score=44.32 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+.+|+++--.+..++.+... ++ .+...++++.||+|+|||..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~--------l~--------~~~~~~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHY--------VK--------TGSMPHLLFAGPPGVGKTTA 62 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHH--------HH--------HTCCCEEEEESCTTSSHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHH--------HH--------cCCCCeEEEECcCCCCHHHH
Confidence 44566665566666655431 11 12113699999999999975
No 145
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.51 E-value=1.6 Score=43.59 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=67.4
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
..++..+....|.....-... ...+.+||.++++.-+......|...++.+..++++.+..++..++..+..|..+|
T Consensus 42 d~lv~apTGsGKTl~~~lp~l---~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~i 118 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPAL---LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL 118 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHHH---HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSE
T ss_pred CEEEECCCCcHHHHHHHHHHH---HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 355667788888754321111 13578999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 011667 382 LISTD 386 (480)
Q Consensus 382 Lv~T~ 386 (480)
+++|.
T Consensus 119 lv~Tp 123 (523)
T 1oyw_A 119 LYIAP 123 (523)
T ss_dssp EEECH
T ss_pred EEECH
Confidence 99995
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.02 E-value=0.26 Score=46.93 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 46 ~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999985
No 147
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.87 E-value=0.24 Score=47.98 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=39.5
Q ss_pred CCCCCcccCCCCHHHHHHHHhh--cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~--~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|++.+-.+...+.+... +.+..|--++...++. .+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-----prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-----PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-----CCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeeEEECcCCCCHHHH
Confidence 4567899999888888887652 1334455555554432 26799999999999985
No 148
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.33 E-value=0.95 Score=42.12 Aligned_cols=54 Identities=15% Similarity=-0.057 Sum_probs=30.7
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCC---CCCCCeEEEEecCHHH-HHHHHHHHHH
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCICPTREL-AIQNLEVLRK 193 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~---~~~~~~~lil~Pt~~L-a~q~~~~~~~ 193 (480)
+.-+++.|++|+|||...+-.+.+.... ...+.+++++.-...+ ..++.+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999997644434332221 1114578888744322 3344444443
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.85 E-value=0.53 Score=43.50 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.++++.||+|+|||..
T Consensus 43 ~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTS 58 (323)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 3599999999999975
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.77 E-value=0.54 Score=46.01 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999985
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.66 E-value=0.54 Score=37.87 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 25 ~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp SCEEEESSTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 78999999999999853
No 152
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.22 E-value=3.4 Score=36.06 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=60.4
Q ss_pred EEEEcCchhHHHHHHHHHHHHh-------cccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFEL-------GEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~-------~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~ 371 (480)
..+..+...+|.....-.+... .....++||.++++..+..+++.+... ++.+..++|+.+.......+
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC
Confidence 3455556666654422212211 124678999999999999998888764 47889999987655443322
Q ss_pred HHHhcCCCcEEEEccc-c----cc--CCCCCCCCEEEE
Q 011667 372 KEFKDGLTQVLISTDV-L----AR--GFDQQQVNLIVN 402 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~~-~----~~--Gldi~~v~~Vi~ 402 (480)
+..+|+|+|.- + .+ .+++.++++||.
T Consensus 145 -----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 145 -----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 45789999952 1 12 467778888885
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.21 E-value=0.98 Score=41.60 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
...++.||.|+|||...
T Consensus 19 ~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 19 ISILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57999999999999753
No 154
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.15 E-value=3.3 Score=35.93 Aligned_cols=95 Identities=12% Similarity=0.171 Sum_probs=59.0
Q ss_pred EEEcCchhHHHHHH-HHHHHHhc--------ccCCcEEEEeCchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHH
Q 011667 304 KVYCPDELAKVMVI-RDRIFELG--------EKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 304 ~~~~~~~~~k~~~l-~~~l~~~~--------~~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~ 371 (480)
.+..+....|.... ...+.... ....++||.++++..+..+++.+... ++.+..++|+.....+...+
T Consensus 61 l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (228)
T 3iuy_A 61 IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI 140 (228)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh
Confidence 45566666665432 22222211 24567999999999999999888764 77889999987755443332
Q ss_pred HHHhcCCCcEEEEccc------cccCCCCCCCCEEEE
Q 011667 372 KEFKDGLTQVLISTDV------LARGFDQQQVNLIVN 402 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~~------~~~Gldi~~v~~Vi~ 402 (480)
. ...+|+|+|.- ....+++.++++||.
T Consensus 141 ---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 141 ---S-KGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp ---H-SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred ---c-CCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 2 34789999942 123567788888885
No 155
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.08 E-value=3.6 Score=35.79 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=64.9
Q ss_pred EEEEcCchhHHHHHH-HHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVI-RDRIFELG--EKMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l-~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.... ...+.... ....++||.++++..+..+++.+... ++.+..++|+.....+...+
T Consensus 64 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 140 (230)
T 2oxc_A 64 LIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--- 140 (230)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---
Confidence 345566667776543 23233322 24568999999999999998888764 67899999998876654433
Q ss_pred hcCCCcEEEEcccc------ccCCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDVL------ARGFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~~------~~Gldi~~v~~Vi~ 402 (480)
...+|+|+|.-. ...+++..+++||.
T Consensus 141 --~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 --KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp --TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred --cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 357899999531 23566778888875
No 156
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.87 E-value=0.39 Score=45.39 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||||||||..
T Consensus 124 g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTT 139 (356)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5899999999999974
No 157
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.61 E-value=0.29 Score=41.13 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 39 ~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHL 54 (180)
T ss_dssp CEEEECCSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 8899999999999985
No 158
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.44 E-value=0.43 Score=43.97 Aligned_cols=42 Identities=14% Similarity=-0.033 Sum_probs=27.8
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHH
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La 184 (480)
.+++.+|+|+|||...+-.+.+... ...+.+++++.....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhh
Confidence 5899999999999864443333332 11255889988765553
No 159
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.33 E-value=5.9 Score=37.40 Aligned_cols=97 Identities=11% Similarity=0.222 Sum_probs=67.3
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.....-.+..... ...++||.|+++..+..+++.+... ++.+..++|+.+....... +
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~ 124 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---L 124 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---H
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---H
Confidence 455566677776544332333321 3458999999999999988887664 7889999999887665443 4
Q ss_pred hcCCCcEEEEccc-c-----ccCCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDV-L-----ARGFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~-~-----~~Gldi~~v~~Vi~ 402 (480)
..+..+|+|+|.- + ...+++..+++||.
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 4577899999942 2 23466778888875
No 160
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.30 E-value=1.8 Score=37.44 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEEEcCchhHHHHH-HHHHHHHhc--ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMV-IRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+...+|... +...+.... ....++||.++++..+..+++.+... ++.+..++|+.....+...+
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 129 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---- 129 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C----
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC----
Confidence 45666777777655 333233222 24568999999999999888877653 77889999987655443322
Q ss_pred cCCCcEEEEcccc------ccCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTDVL------ARGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~~~------~~Gldi~~v~~Vi~ 402 (480)
...+|+|+|.-. ...+++..+++||.
T Consensus 130 -~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 -RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 237899999522 34566778888875
No 161
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.11 E-value=1.3 Score=45.09 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=64.0
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--hcCCCc
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF--KDGLTQ 380 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f--~~g~~~ 380 (480)
.++..+....|.....-.. +. ..+.+||.++++.-+...+..|...|+.+..++|+++..++..++..+ ..+..+
T Consensus 62 ~lv~~pTGsGKTl~~~lpa--l~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 138 (591)
T 2v1x_A 62 VFLVMPTGGGKSLCYQLPA--LC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELK 138 (591)
T ss_dssp EEEECCTTSCTTHHHHHHH--HT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCC
T ss_pred EEEEECCCChHHHHHHHHH--HH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCC
Confidence 4555666666654322111 11 457899999999999999999999999999999999999999888888 578899
Q ss_pred EEEEcc
Q 011667 381 VLISTD 386 (480)
Q Consensus 381 iLv~T~ 386 (480)
||++|.
T Consensus 139 Ilv~Tp 144 (591)
T 2v1x_A 139 LIYVTP 144 (591)
T ss_dssp EEEECH
T ss_pred EEEECh
Confidence 999997
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.05 E-value=4 Score=38.36 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45799999999999753
No 163
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.62 E-value=1.3 Score=48.36 Aligned_cols=94 Identities=13% Similarity=0.232 Sum_probs=65.9
Q ss_pred cCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 307 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GY----EVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 307 ~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.+....|.......+......+.++||.++++..+..+++.+... ++ .+..++|+.+...+....+.+.+
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-- 155 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 155 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--
Confidence 344445543333334444446789999999999999888887643 56 89999999999888777777776
Q ss_pred CcEEEEcc-ccccCCC-CCCCCEEEE
Q 011667 379 TQVLISTD-VLARGFD-QQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~~~Gld-i~~v~~Vi~ 402 (480)
.+|+|+|. .+..-+. +..+++||.
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 89999995 2222222 557788875
No 164
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.44 E-value=0.49 Score=45.24 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++.+=-....+.+.... .+..|--++...++. .+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-----prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-----PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCceEEeCCCCCCHHHH
Confidence 5678999987777777776522 233444444444331 26799999999999985
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.27 E-value=1.9 Score=43.97 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.8
Q ss_pred ccCCCCccEEEEccCCCccchH
Q 011667 135 ILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..| ..+++.||+|+|||..
T Consensus 57 i~~g--~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 57 ANQK--RHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHTT--CCEEEECCTTSSHHHH
T ss_pred ccCC--CEEEEEeCCCCCHHHH
Confidence 3345 7999999999999985
No 166
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.13 E-value=0.45 Score=46.01 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||||||||..
T Consensus 168 gii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT 183 (418)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6789999999999984
No 167
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.75 E-value=0.55 Score=54.08 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=28.6
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHH
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~ 182 (480)
++++++.+|+|+|||..+...+.+... .+.+++++.....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 389999999999999865444444333 3557888876543
No 168
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.60 E-value=0.54 Score=45.85 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 185 (480)
.++++.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 78999999999999874 223332222 2457788889988764
No 169
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.05 E-value=0.36 Score=38.85 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.++++.|++|+|||..
T Consensus 28 ~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 28 SPVFLTGEAGSPFETV 43 (143)
T ss_dssp SCEEEEEETTCCHHHH
T ss_pred CcEEEECCCCccHHHH
Confidence 7899999999999974
No 170
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.68 E-value=7.3 Score=34.27 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=51.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----ccCCCCCCC
Q 011667 328 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----ARGFDQQQV 397 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-~-----~~Gldi~~v 397 (480)
..++||.++++..+..+++.+... ++.+..++|+.........+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888877653 57788899988765443322 345789999952 1 234577788
Q ss_pred CEEEE
Q 011667 398 NLIVN 402 (480)
Q Consensus 398 ~~Vi~ 402 (480)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.49 E-value=0.52 Score=45.74 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=36.3
Q ss_pred CCCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|++.+-.....+.+.... .+..|--++...++ ..+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-----~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-----PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-----CCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCCeEEEECCCCCcHHHH
Confidence 35678999987777777765421 23334444443332 126799999999999985
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=84.28 E-value=1.5 Score=40.72 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC---CCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++++-...+.+.+.... . .|.+ .|.++.+ ..+.+++.||+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v--~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV--I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH--H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568999888888877776421 0 1111 1222221 126899999999999985
No 173
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.17 E-value=0.52 Score=43.87 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC---CCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.....+.+..... .|.. .|.++.+ ..+.+++.||+|+|||+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~----~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI----LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH----HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH----HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 45679999888888888875221 1111 1222211 126799999999999985
No 174
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.90 E-value=7.3 Score=34.63 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=53.1
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc--ccCCCCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VL--ARGFDQQ 395 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~-----~~--~~Gldi~ 395 (480)
...++||.++++..+..+++.+... +..+..++|+......... +..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999998888763 6778889998876554433 3334 78999994 12 2357788
Q ss_pred CCCEEEE
Q 011667 396 QVNLIVN 402 (480)
Q Consensus 396 ~v~~Vi~ 402 (480)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888885
No 175
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.78 E-value=0.51 Score=45.91 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=36.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++.+-...+.+.|.... .+..|--++...++ ..+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-----pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGID-----PPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-----CCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-----CCCceEeeCCCCCcHHHH
Confidence 4578999998888888876521 22333334433332 127899999999999974
No 176
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.76 E-value=1.3 Score=39.55 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCCcccCCCCHHHHHHHHhhcC-CCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~-~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.+...+.+..... +..|.. +..+-....+.+++.||+|+|||..
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSR-----FQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGG-----C-----CCCCEEEEECCTTSCHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHH-----HHHcCCCCCCeEEEECcCCCCHHHH
Confidence 35678888777777776654110 111111 1111001125799999999999975
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.26 E-value=1.5 Score=38.99 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCcccCCCCHHHHHHHHhhcC-CCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 100 TTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~~-~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+|+++.-...+.+.+..... +..|..+....+ ...+.+++.||+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~-----~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGA-----KVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------C-----CCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCC-----CCCceEEEECCCCCCHHHH
Confidence 467777666666666643100 111111111111 1126799999999999975
No 178
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.14 E-value=0.71 Score=45.94 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||||||||+.
T Consensus 261 ~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 261 FSAIVVGETASGKTTT 276 (511)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999984
No 179
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.69 E-value=0.96 Score=43.53 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=37.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|++++=-....+.+.... .+..|--++...++. .+.+|+.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-----prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-----PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-----CSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCCCceECCCCchHHHH
Confidence 35678999987777777766421 234455555544431 26799999999999984
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.61 E-value=0.38 Score=43.68 Aligned_cols=54 Identities=19% Similarity=0.419 Sum_probs=27.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++++-.+.+.+.+.... .+..+.-++ .+..-. . +.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~--~~~l~~-~--~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFK--ALGLVT-P--AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHH--HTTCCC-C--SEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHH--HcCCCC-C--CeEEEECCCCCcHHHH
Confidence 3567899887777777775421 111111111 111111 1 4599999999999984
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.50 E-value=0.56 Score=45.41 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCCCCcccCCCCHHHHHHHHhhc--CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~--~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|++.+=-..+.+.+.... .+..|--++...++ ..+.+++.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~-----~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID-----PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-----CCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCceEEEECCCCCCHHHH
Confidence 34678999987777777765421 23334444443332 126799999999999985
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.16 E-value=0.92 Score=39.96 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=29.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
.-+++.|++|+|||...+-.+...+. .+..++++.-.. -..++.+.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS-CHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC-CHHHHHHHHHH
Confidence 78999999999999863332332222 244677776332 23455555543
No 183
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=81.80 E-value=14 Score=34.17 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhcc--cCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHh
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
...+..+....|.......+..... ...++||.++++..+..+++.+.. .++.+..++|+.........+.
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 122 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--- 122 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---
Confidence 3455566777776654433444332 467899999999999988888865 3678899999987665443332
Q ss_pred cCCCcEEEEccc-c-----ccCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTDV-L-----ARGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~~-~-----~~Gldi~~v~~Vi~ 402 (480)
..+|+|+|.- + ...+++..+++||.
T Consensus 123 --~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 --NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp --TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred --CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4689999942 1 12356777888775
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.67 E-value=1.1 Score=42.93 Aligned_cols=16 Identities=50% Similarity=0.534 Sum_probs=14.2
Q ss_pred ccEEE--EccCCCccchH
Q 011667 141 RNLIA--QARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv--~a~TGsGKTl~ 156 (480)
..+++ .|+.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 67888 99999999985
No 185
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.43 E-value=0.87 Score=43.12 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.9
Q ss_pred CCCCccEEEEccCCCccchH
Q 011667 137 TPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~ 156 (480)
.| ..+++.||||||||..
T Consensus 174 ~G--~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LE--RVIVVAGETGSGKTTL 191 (361)
T ss_dssp TT--CCEEEEESSSSCHHHH
T ss_pred cC--CEEEEECCCCCCHHHH
Confidence 45 8999999999999983
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.41 E-value=0.94 Score=41.39 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=31.9
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHH-hhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQA-ISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~-~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.....+.+.... .. |... ..+..+. ...+.+++.||+|+|||+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i--~~--~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV--IL--PSVRPELFTGLR-APAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT--HH--HHHCGGGSCGGG-CCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH--Hh--hhhCHHHHhcCC-CCCCeEEEECcCCCCHHHH
Confidence 3567888877777777776521 10 1110 1111111 1227899999999999985
No 187
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.21 E-value=12 Score=35.28 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=63.9
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+....|.....-.+..... ...++||.++++..+..+++.+... ++.+..++|+......... .
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~ 136 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----L 136 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----T
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----h
Confidence 345566667776543332333322 3458999999999998888877653 6789999999876543322 2
Q ss_pred cCCCcEEEEccc-----cc-cCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTDV-----LA-RGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~~-----~~-~Gldi~~v~~Vi~ 402 (480)
.+..+|+|+|.- +. ...++.++++||.
T Consensus 137 ~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 137 NETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred cCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 466789999942 22 3456778888875
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.12 E-value=0.62 Score=42.86 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhcC--CCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~--~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.....+.+..... +..|..+.... +-.+ +.+++.||+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~--~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPS--KGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCC--SEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC---CCCC--ceEEEECCCCcCHHHH
Confidence 35678888777777777664211 11111111111 1123 7899999999999985
No 189
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.06 E-value=0.74 Score=38.47 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6899999999999975
No 190
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.04 E-value=1.2 Score=49.43 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=28.1
Q ss_pred EEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
-+|.|..|||||.+.+-=+...+.....+.++|+|||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 378889999999875544444444444557899999986
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.94 E-value=0.78 Score=41.64 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCCcccCCCCHHHHHHHHhhcC--CCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~--~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-....++.+..... ...+..++... +..+ +.+++.||+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG---IEPP--KGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC---CCCC--SEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCC--CeEEEECCCCCcHHHH
Confidence 35678888877887777765211 11111111111 1123 7899999999999975
No 192
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.62 E-value=15 Score=34.77 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=65.1
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+....|.....-.+.... ....++||.++++..+..+++.+... ++.+..++|+.........+.
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 153 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD--- 153 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---
T ss_pred EEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---
Confidence 45556677777655443344433 25678999999999999998887653 578889999988766544332
Q ss_pred cCCCcEEEEcc-----ccc-cCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTD-----VLA-RGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~-----~~~-~Gldi~~v~~Vi~ 402 (480)
...+|+|+|. .+. ..++...+++||.
T Consensus 154 -~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 154 -YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp -HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 2357999994 222 3456667787774
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.41 E-value=0.56 Score=39.13 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 44 ~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 44 NNPILLGDPGVGKTAI 59 (187)
T ss_dssp CEEEEESCGGGCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6899999999999975
No 194
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.09 E-value=1.6 Score=43.27 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.0
Q ss_pred ccEEEEccCCCccchHhHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGM 161 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~i 161 (480)
.++++.|+||||||.+.-..+
T Consensus 168 pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999998643333
No 195
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.96 E-value=8.4 Score=37.33 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc-ccCCcEEEEeCchhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHhcC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDF-GY---EVTTIMGATIQEERDKIVKEFKDG 377 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~f~~g 377 (480)
..+..+....|.......+.... ....++||.|+++..+..+++.+.+. +. .+..+||+....++.....
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 34455666666555444333322 35789999999999999999888765 55 8999999998877655433
Q ss_pred CCcEEEEcc-ccc-----cCCCCCCCCEEEE
Q 011667 378 LTQVLISTD-VLA-----RGFDQQQVNLIVN 402 (480)
Q Consensus 378 ~~~iLv~T~-~~~-----~Gldi~~v~~Vi~ 402 (480)
..+|+|+|. .+. ..+....+++||.
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 357999994 222 2456777888885
No 196
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=79.67 E-value=15 Score=34.48 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=64.1
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHh
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+..+....|.....-.+.... ....++||.|+++..+..+++.+.. .++.+..++|+.........+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---
Confidence 45556677777755332233322 1456899999999999988887765 3688999999988766554443
Q ss_pred cCCCcEEEEcccc------ccCCCCCCCCEEEE
Q 011667 376 DGLTQVLISTDVL------ARGFDQQQVNLIVN 402 (480)
Q Consensus 376 ~g~~~iLv~T~~~------~~Gldi~~v~~Vi~ 402 (480)
..+|+|+|.-. ...+....+++||.
T Consensus 138 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp --HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 35799999421 23455667888775
No 197
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.64 E-value=1.2 Score=41.45 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=18.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
..+++.||||||||. ++-++..+.
T Consensus 172 ~~v~i~G~~GsGKTT--ll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTT--YIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHH--HHHHGGGGS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 799999999999998 344444443
No 198
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=79.62 E-value=4.7 Score=36.85 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=77.2
Q ss_pred EEEcCchhHHHHH-HHHHHHHhcc--cCCcEEEEeCchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHh
Q 011667 304 KVYCPDELAKVMV-IRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 304 ~~~~~~~~~k~~~-l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
.+..+....|... +...+..... ...++||.+++++.+..++..+... ++.+..++|+.....+.
T Consensus 135 l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 207 (300)
T 3fmo_B 135 IAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ------- 207 (300)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------
T ss_pred EEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------
Confidence 3444455556443 3333333322 2347999999999999988877653 56777887776532211
Q ss_pred cCCCcEEEEcccc------c-cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHH
Q 011667 376 DGLTQVLISTDVL------A-RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 448 (480)
Q Consensus 376 ~g~~~iLv~T~~~------~-~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~ 448 (480)
....+|+|+|.-. . ..+++..+.+||.-..... .+...|...+-+..+.-....-+++++..-....
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l------~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v 281 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM------IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH------HHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHH
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH------hhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHH
Confidence 3456899999532 1 3677889999885322100 0000121112222222223445667765555555
Q ss_pred HHHHHHHhCC
Q 011667 449 MEKIERYFDI 458 (480)
Q Consensus 449 ~~~i~~~l~~ 458 (480)
......++..
T Consensus 282 ~~~a~~~l~~ 291 (300)
T 3fmo_B 282 WKFAQKVVPD 291 (300)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHCCC
Confidence 5555666543
No 199
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.22 E-value=1.2 Score=42.53 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=28.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
.++++.|+||||||...-.-+.+... .+.+++|+=|..+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPEREY 75 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCCS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcCH
Confidence 78999999999999864443333322 35578888787653
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.12 E-value=0.93 Score=38.67 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999985
No 201
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=79.01 E-value=3.3 Score=30.99 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=34.4
Q ss_pred cccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHH
Q 011667 325 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQE 365 (480)
Q Consensus 325 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~ 365 (480)
.....+++|||.+-..+...+..|...|+. +..+.|++...
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 90 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAW 90 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHH
Confidence 346678999999988899999999999985 88899987543
No 202
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.53 E-value=1.1 Score=37.57 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+++.||+|||||..
T Consensus 6 ~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999984
No 203
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.47 E-value=1.3 Score=38.26 Aligned_cols=30 Identities=27% Similarity=0.122 Sum_probs=23.2
Q ss_pred hHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+.-|..++..+-.| .-+.+.||.|||||+.
T Consensus 9 ~~g~~~~l~~i~~G--e~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTN--TIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHC--SEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCC--CEEEEECCCCCCHHHH
Confidence 34455666667667 8899999999999984
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.22 E-value=1.3 Score=40.76 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+++++.||+|+|||...
T Consensus 153 ~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999853
No 205
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.22 E-value=0.98 Score=37.68 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=15.3
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.|++|||||...
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 78999999999999853
No 206
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=78.10 E-value=2.2 Score=32.16 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=35.0
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHH
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQE 365 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~ 365 (480)
....+++|||.+-..+...+..|...|+++..+.|++...
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W 92 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSW 92 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHH
Confidence 3567899999999999999999999999999999997643
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.88 E-value=0.74 Score=43.80 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||||||||..
T Consensus 137 ~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTT 152 (372)
T ss_dssp EEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999984
No 208
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=77.87 E-value=3.9 Score=35.87 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=60.5
Q ss_pred EEEEcCchhHHHHHH-HHHHHHhc---ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVI-RDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l-~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
..+..+....|.... ...+.... ....++||.++++..+..+++.+... ++.+..++|+.....+ ....
T Consensus 69 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 145 (245)
T 3dkp_A 69 LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPK 145 (245)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhh
Confidence 355566666676542 22222222 24457999999999999999888764 6777777765322111 1122
Q ss_pred hcCCCcEEEEccc-----ccc---CCCCCCCCEEEE
Q 011667 375 KDGLTQVLISTDV-----LAR---GFDQQQVNLIVN 402 (480)
Q Consensus 375 ~~g~~~iLv~T~~-----~~~---Gldi~~v~~Vi~ 402 (480)
..+..+|+|+|.- +.. .+++.++.+||.
T Consensus 146 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 146 SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 3456789999942 212 578888998885
No 209
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.59 E-value=2.4 Score=44.52 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|.+++......+.+....-+....|.+-..+. + ...+.+|+.||+|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g--~-~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG--M-TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC--C-CCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC--C-CCCceEEEecCCCCCchHH
Confidence 4567899999999999888763222211111111111 1 1226799999999999975
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.48 E-value=1.1 Score=40.20 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||||||||..
T Consensus 26 ~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTT 41 (261)
T ss_dssp EEEEEECSTTCSHHHH
T ss_pred CEEEEECCCCccHHHH
Confidence 7899999999999984
No 211
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.38 E-value=1.2 Score=39.27 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=28.9
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
+.-+++.|++|+|||...+-.+.+.... .+..+++++-. .-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHHHH
Confidence 3789999999999996533323332221 13357776643 224455554443
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.09 E-value=0.87 Score=43.01 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCC---CCccEEEEccCCCccchHh
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~ 157 (480)
..+|+++.-.....+.+.... . .|.. .|.++.+ ..+.+++.||+|+|||+.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v--~--~~~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAV--I--LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHT--H--HHHH---CGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH--H--HHHh---CHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 557888776666666665421 1 0111 1111111 1267999999999999853
No 213
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.96 E-value=8.9 Score=37.05 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred EEEEcCchhHHHHH-HHHHHHHhc-------ccCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHH
Q 011667 303 YKVYCPDELAKVMV-IRDRIFELG-------EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKI 370 (480)
Q Consensus 303 ~~~~~~~~~~k~~~-l~~~l~~~~-------~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~ 370 (480)
.....+....|... +...+.... ....++||.+++++.+..+++.+.+. ++.+..++|+.+...+...
T Consensus 96 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 175 (434)
T 2db3_A 96 LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC 175 (434)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH
Confidence 44555666666553 222222221 12458999999999999998887653 5788899999987655443
Q ss_pred HHHHhcCCCcEEEEccc-----ccc-CCCCCCCCEEEE
Q 011667 371 VKEFKDGLTQVLISTDV-----LAR-GFDQQQVNLIVN 402 (480)
Q Consensus 371 ~~~f~~g~~~iLv~T~~-----~~~-Gldi~~v~~Vi~ 402 (480)
+ ....+|+|+|.- +.+ .+++..+++||.
T Consensus 176 l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 176 I----TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp H----TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred h----hcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 3 245789999942 222 356778888875
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=76.77 E-value=1.6 Score=38.46 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 32 e~~~iiG~nGsGKST--Ll~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKST--MLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 789999999999998 4555555544
No 215
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.55 E-value=6.3 Score=33.79 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=61.8
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIV 371 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~ 371 (480)
..+..+....|.....-.+..... ...++||.++++..+..+++.+... ++.+..++|+.+.......
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 122 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK- 122 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC-
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH-
Confidence 355667777776653332333322 3568999999999999888877543 6788889998754332211
Q ss_pred HHHhcCCCcEEEEcc-----ccc-cCCCCCCCCEEEE
Q 011667 372 KEFKDGLTQVLISTD-----VLA-RGFDQQQVNLIVN 402 (480)
Q Consensus 372 ~~f~~g~~~iLv~T~-----~~~-~Gldi~~v~~Vi~ 402 (480)
+ ....+|+|+|. .+. ..+++..+++||.
T Consensus 123 --~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 123 --L-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp --C-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred --c-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 1 23568999994 222 2456777888775
No 216
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=76.50 E-value=3.4 Score=45.83 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=40.8
Q ss_pred cEEEEccCCCccchHhHHHHhhccCCC---------CCCCeEEEEecCHHHHHHHHHHHHHH
Q 011667 142 NLIAQARNGSGKTTCFVLGMLSRVDPN---------LKAPQALCICPTRELAIQNLEVLRKM 194 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~~l~~~---------~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (480)
..+|.|.-|||||.+..--++..+... ....++|+|+=|+.-|..+.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999987655566655421 23457999999999999998888764
No 217
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.46 E-value=2.3 Score=42.64 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=19.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.+++|.|.||||||.+.-..++..+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999875444444443
No 218
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.37 E-value=2.5 Score=39.07 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=31.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC---------CCC----CeEEEEecCHHH-HHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---------LKA----PQALCICPTREL-AIQNLEVLRKM 194 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~---------~~~----~~~lil~Pt~~L-a~q~~~~~~~~ 194 (480)
.-+++.|++|+|||...+-.+.+..... ..+ .+++++.-...+ ..++.+.+..+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999975444333322110 112 478888744322 34444444443
No 219
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=76.37 E-value=30 Score=28.32 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=62.1
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv 383 (480)
+..+.+.......+.+.+.......+.+-|.|.+..++..+...|...|+.+..+.++.. ...-.|.|
T Consensus 37 ~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v 104 (174)
T 3dmn_A 37 VVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIV 104 (174)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEE
Confidence 334445555555555545442224678899999999999999999999998877765431 12346999
Q ss_pred EccccccCCCCCCCCEEEEccCC
Q 011667 384 STDVLARGFDQQQVNLIVNYDPP 406 (480)
Q Consensus 384 ~T~~~~~Gldi~~v~~Vi~~~~p 406 (480)
.|--.+.|+.+ ++||.+++.
T Consensus 105 ~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 105 VPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp EEGGGCTTCCE---EEEEEETCB
T ss_pred EEccccCCcCC---CEEEEecCC
Confidence 99999999987 677777654
No 220
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.26 E-value=6.9 Score=41.29 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred EEEEcCchhHHHHHHHHHHHHhccc-----CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
..+..+...+|.....-.+...... .+++||.|+++..+..++..+... ++.+..+||+.+...+...+.
T Consensus 266 ~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~- 344 (797)
T 4a2q_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI- 344 (797)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH-
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh-
Confidence 3455566666655433333332212 678999999999988887777654 899999999987655433222
Q ss_pred HhcCCCcEEEEccc-c----ccC-C-CCCCCCEEEEc
Q 011667 374 FKDGLTQVLISTDV-L----ARG-F-DQQQVNLIVNY 403 (480)
Q Consensus 374 f~~g~~~iLv~T~~-~----~~G-l-di~~v~~Vi~~ 403 (480)
+..+|+|+|.- + ..+ + .+.++++||.-
T Consensus 345 ---~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 378 (797)
T 4a2q_A 345 ---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (797)
T ss_dssp ---HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEET
T ss_pred ---CCCCEEEEchHHHHHHHHhccccccccCCEEEEE
Confidence 34689999942 1 222 3 56678888853
No 221
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.21 E-value=1.4 Score=39.22 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhc-CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.+.....+..-. .+..+. ++..+--.-.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHH-----HHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHH-----HHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 4567888877776666554310 111111 11111101114599999999999974
No 222
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.61 E-value=1.5 Score=37.40 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+++.||||+|||..
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 7899999999999864
No 223
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=75.61 E-value=4.6 Score=40.25 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred EEEcCchhHHHHHHHHHHHHhcc--c---CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 304 KVYCPDELAKVMVIRDRIFELGE--K---MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~--~---~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
.+..+....|.....-.+..... . ..++||.|+++..+..++..+... ++.+..++|+.+...+...+.
T Consensus 23 l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 100 (555)
T 3tbk_A 23 IICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII-- 100 (555)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH--
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh--
Confidence 44555566665443332333221 1 678999999999888887777654 899999999986554432221
Q ss_pred hcCCCcEEEEccc-c----ccC-C-CCCCCCEEEEc
Q 011667 375 KDGLTQVLISTDV-L----ARG-F-DQQQVNLIVNY 403 (480)
Q Consensus 375 ~~g~~~iLv~T~~-~----~~G-l-di~~v~~Vi~~ 403 (480)
+..+|+|+|.- + ..+ + .+..+++||.-
T Consensus 101 --~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 134 (555)
T 3tbk_A 101 --EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFD 134 (555)
T ss_dssp --HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEET
T ss_pred --cCCCEEEECHHHHHHHHhcCcccccccCCEEEEE
Confidence 23679999942 2 222 3 56678888853
No 224
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=75.53 E-value=6.1 Score=39.40 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=58.7
Q ss_pred EEEcCchhHHHHHHHHHHHHhccc-----CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
.+..+....|.....-.+...... ..++||.++++..+..++..+... ++.+..++|+.+...+...+.
T Consensus 26 l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 103 (556)
T 4a2p_A 26 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI-- 103 (556)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--
T ss_pred EEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--
Confidence 445555666654433223332211 678999999999988888777654 899999999986655433222
Q ss_pred hcCCCcEEEEccc-c----ccC-C-CCCCCCEEEEc
Q 011667 375 KDGLTQVLISTDV-L----ARG-F-DQQQVNLIVNY 403 (480)
Q Consensus 375 ~~g~~~iLv~T~~-~----~~G-l-di~~v~~Vi~~ 403 (480)
...+|+|+|.- + ..+ + .+..+++||.-
T Consensus 104 --~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 104 --EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp --HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred --CCCCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 23679999942 2 222 3 67788888853
No 225
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=75.33 E-value=4 Score=31.82 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=33.8
Q ss_pred cC-CcEEEEe-CchhhHHHHHHHHHhCCCcEEEecCCCCHHH
Q 011667 327 KM-GQTIIFV-RTKNSASALHKALKDFGYEVTTIMGATIQEE 366 (480)
Q Consensus 327 ~~-~~~lVf~-~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~ 366 (480)
.. .+++||| .+-..+..++..|...|+++..+.|++....
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 128 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAYR 128 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHHH
Confidence 44 7899999 5777888999999999999999999987654
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.84 E-value=1.8 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=22.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.-+++.|++|+|||......+. ..+..++++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~ 52 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL------LSGKKVAYVD 52 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEE
Confidence 7899999999999975433332 1244677776
No 227
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.83 E-value=1.4 Score=40.74 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=22.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
.-+++.|+.|||||.. +-.+.... .+.++.|+.|.
T Consensus 5 ~v~~i~G~~GaGKTTl--l~~l~~~~---~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL--LRHILNEQ---HGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHH--HHHHHHSC---CCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHH--HHHHHhhc---CCCcEEEEEec
Confidence 3578999999999984 22222222 24466666665
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.83 E-value=1.3 Score=37.87 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.5
Q ss_pred ccCCCCccEEEEccCCCccchH
Q 011667 135 ILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..| +-++++||+|||||..
T Consensus 9 ~~~~--~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARI--PPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCC--CCEEEECCTTSCHHHH
T ss_pred cccC--CEEEEECCCCCCHHHH
Confidence 3445 7899999999999984
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.60 E-value=1.4 Score=40.50 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 56789999999999753
No 230
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.50 E-value=0.99 Score=42.50 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.3
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45667888556789999999999986
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.48 E-value=1.2 Score=40.75 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.|++|+|||...
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.48 E-value=3.3 Score=38.94 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=31.6
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHH-hhcccccCCCCccEEEEccCCCccchHh
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQA-ISLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~-~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
..+|+++.-.....+.+.... . .|... ..+.... ...+.+++.||+|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i--~--~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIV--V--WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHT--H--HHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH--H--HHhhChHhHhhcc-CCCceEEEECCCCCCHHHHH
Confidence 567888776777777776521 1 11111 0111111 22378999999999999853
No 233
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.43 E-value=2.7 Score=37.77 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~ 168 (480)
.-+.+.||+|||||+ ++-++..+...
T Consensus 38 e~~~liG~nGsGKST--Ll~~l~Gl~~p 63 (266)
T 4g1u_C 38 EMVAIIGPNGAGKST--LLRLLTGYLSP 63 (266)
T ss_dssp CEEEEECCTTSCHHH--HHHHHTSSSCC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCCC
Confidence 788999999999998 45555555443
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.36 E-value=1.3 Score=36.71 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||..
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6789999999999985
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.23 E-value=2.5 Score=39.86 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||..+
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999853
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.21 E-value=2.5 Score=38.59 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999985
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.10 E-value=1.4 Score=41.02 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999753
No 238
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.00 E-value=1.4 Score=41.28 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=21.9
Q ss_pred hcccccCCCCccEEEEccCCCccchHh
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.+..++.|.+--++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 567778885556889999999999873
No 239
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.85 E-value=3.6 Score=36.63 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|+|||..
T Consensus 30 ~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 30 KPVLIIGERGTGKELI 45 (265)
T ss_dssp SCEEEECCTTSCHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 7899999999999974
No 240
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.76 E-value=1.1 Score=41.46 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=20.5
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 44556778555689999999999986
No 241
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.61 E-value=1.5 Score=42.73 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccC---CCCccEEEEccCCCccchH
Q 011667 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT---PPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~---~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..+|+++.-...+.+.+..... .|... |.++. ...+.+++.||+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~----~p~~~---~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI----LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT----HHHHC---TTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH----HHhhC---HHHhhccCCCCceEEEECCCCCCHHHH
Confidence 345688988877787777765211 11111 11111 1126899999999999985
No 242
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.60 E-value=1.1 Score=40.08 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 45 ~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLL 60 (268)
T ss_dssp SCCCCBCSSCSSHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5699999999999985
No 243
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=73.50 E-value=6 Score=33.59 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=57.1
Q ss_pred EEEEcCchhHHHHHHHHHHHHhc------ccCCcEEEEeCchhhHHH-HHHHHHh---CCCcEEEecCCCCHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELG------EKMGQTIIFVRTKNSASA-LHKALKD---FGYEVTTIMGATIQEERDKIVK 372 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~------~~~~~~lVf~~s~~~~~~-l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~ 372 (480)
..+..+....|.......+.... ....++||+|+++..+.. +.+.+.. .++.+..++|+.....+...+.
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 130 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc
Confidence 45666777777655443333221 136799999999988777 5555443 3678999998765332221111
Q ss_pred HHhcCCCcEEEEccc-c----cc-------CCCCCCCCEEEEc
Q 011667 373 EFKDGLTQVLISTDV-L----AR-------GFDQQQVNLIVNY 403 (480)
Q Consensus 373 ~f~~g~~~iLv~T~~-~----~~-------Gldi~~v~~Vi~~ 403 (480)
...+|+|+|.- + .. ++.+.++++||.-
T Consensus 131 ----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 131 ----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp ----HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred ----cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 24679999943 2 12 2566777888753
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.46 E-value=1.3 Score=37.72 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+.+.||+|+|||..
T Consensus 5 ~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTL 20 (198)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999984
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.43 E-value=1.7 Score=37.33 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+++.||+|+|||..
T Consensus 9 ~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 7899999999999985
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.39 E-value=1.3 Score=36.99 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.4
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+.+++.|++|||||...-
T Consensus 6 ~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 679999999999998543
No 247
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=73.31 E-value=3.1 Score=30.75 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=33.7
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
+..+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 56789999999999999999999999999999998653
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.31 E-value=1.2 Score=37.39 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||+.
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7899999999999984
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.30 E-value=1.4 Score=37.51 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.|++|||||...
T Consensus 26 ~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 78999999999999853
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.23 E-value=1.4 Score=37.49 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+++.|++|||||..
T Consensus 7 ~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7889999999999984
No 251
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=73.17 E-value=3.1 Score=34.45 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=46.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCc
Q 011667 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (480)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 247 (480)
...++||.|+++..+..++..+... ++.+..+++..+..... .........+|+|+|.- + ...+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCccc
Confidence 3568999999999998888877664 45555666554322111 11111234689999942 1 23566778
Q ss_pred eEEEEE
Q 011667 248 LKILVY 253 (480)
Q Consensus 248 ~~~lVi 253 (480)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888874
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=73.07 E-value=2.2 Score=38.60 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 35 e~~~iiGpnGsGKST--Ll~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKST--LFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHHcCCC
Confidence 788999999999998 4555555443
No 253
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=72.91 E-value=1.5 Score=41.16 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=21.9
Q ss_pred hcccccCCCCccEEEEccCCCccchHh
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.+..++.|.+--++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 667788885556788999999999873
No 254
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=72.85 E-value=12 Score=39.15 Aligned_cols=92 Identities=7% Similarity=-0.040 Sum_probs=60.7
Q ss_pred EEEcCchhHHHHHHH-HHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 304 KVYCPDELAKVMVIR-DRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~-~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.........|..... ..+.... .+.+++|.++|+..|...+..+.. .|+.+..+.|+++...|.... .
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~ 163 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------A 163 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------H
T ss_pred eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------C
Confidence 445555566644432 3222232 456899999999999888777644 589999999999976554432 2
Q ss_pred CcEEEEcccc------ccC-------CCCCCCCEEEE
Q 011667 379 TQVLISTDVL------ARG-------FDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~~~------~~G-------ldi~~v~~Vi~ 402 (480)
.+|+|+|.-- ..+ +...++.++|.
T Consensus 164 ~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 164 ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEE
Confidence 6899999521 222 45567777764
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.85 E-value=1.6 Score=40.09 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+-++++||||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 45789999999999753
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.81 E-value=1.3 Score=36.37 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 2 ~~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFA 18 (179)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999853
No 257
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=72.67 E-value=3.1 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=33.5
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
+..+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 56789999999989999999999999999999998653
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=72.67 E-value=5.6 Score=36.65 Aligned_cols=49 Identities=16% Similarity=0.008 Sum_probs=29.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (480)
.-+++.|++|+|||...+-.+.+.... +..+++++-- .-..|+..++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 789999999999996533333333322 3468887743 233454544443
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.64 E-value=2.3 Score=42.15 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=21.2
Q ss_pred HHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
..=..++..+..+ .++++.||+|+|||..
T Consensus 29 ~~i~~l~~al~~~--~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSG--ESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHT--CEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHhcC--CeeEeecCchHHHHHH
Confidence 3333444455566 8999999999999974
No 260
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=72.62 E-value=1.3 Score=41.53 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=20.5
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 34556778556788999999999986
No 261
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=72.55 E-value=21 Score=33.81 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=63.0
Q ss_pred EEEcCchhHHHHHHHHHHHHhcc---cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhc
Q 011667 304 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 376 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 376 (480)
.+..+....|.....-.+..... ...++||.++++..+..+++.+... +..+..++|+...... ...+..
T Consensus 81 lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 157 (414)
T 3eiq_A 81 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQM 157 (414)
T ss_dssp EECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTT
T ss_pred EEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhc
Confidence 44455555665443322333322 4678999999999999888887653 6788888888765443 344556
Q ss_pred CCCcEEEEcc-----ccc-cCCCCCCCCEEEE
Q 011667 377 GLTQVLISTD-----VLA-RGFDQQQVNLIVN 402 (480)
Q Consensus 377 g~~~iLv~T~-----~~~-~Gldi~~v~~Vi~ 402 (480)
+..+|+|+|. .+. ..++...+++||.
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 7889999994 222 3456667787774
No 262
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.54 E-value=26 Score=33.15 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=51.4
Q ss_pred CcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-cCCCCCCCC
Q 011667 329 GQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LA-RGFDQQQVN 398 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~-----~~-~Gldi~~v~ 398 (480)
.++||.++++..+..+++.+.. .++.+..++|+.........+ ....+|+|+|.- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999998888765 468899999998876544332 235689999952 11 235677788
Q ss_pred EEEE
Q 011667 399 LIVN 402 (480)
Q Consensus 399 ~Vi~ 402 (480)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 263
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=72.49 E-value=4.8 Score=44.15 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=61.9
Q ss_pred EEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011667 304 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 383 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv 383 (480)
++..+....|.....-.+......++++||.++++.-+...+..|....-.+..++|+.+ .++..+|+|
T Consensus 203 LV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV 271 (1108)
T 3l9o_A 203 LVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLV 271 (1108)
T ss_dssp EEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEE
Confidence 445556666665544434444456789999999999999999999886668999999886 246678999
Q ss_pred Ec-----cccccCCC-CCCCCEEEE
Q 011667 384 ST-----DVLARGFD-QQQVNLIVN 402 (480)
Q Consensus 384 ~T-----~~~~~Gld-i~~v~~Vi~ 402 (480)
+| +.+.++-. +.++.+||.
T Consensus 272 ~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 272 MTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp EEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred eChHHHHHHHHcCccccccCCEEEE
Confidence 99 33334332 556666664
No 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.38 E-value=1.7 Score=39.90 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999753
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.35 E-value=4.2 Score=37.12 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=13.9
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+.+.+++|+|||..
T Consensus 99 ~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTT 114 (295)
T ss_dssp EEEEEECCTTTTHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7788889999999974
No 266
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.32 E-value=2.8 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 68999999999999853
No 267
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=72.28 E-value=1.4 Score=41.87 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeE
Confidence 34556778555688899999999986
No 268
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=72.25 E-value=22 Score=26.19 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=39.7
Q ss_pred EEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 011667 331 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 380 (480)
Q Consensus 331 ~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~ 380 (480)
.+||....+-...+...++..|+.+..++++.....|..-++.|...-.+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 36677777777888888888899999999999888888888888654433
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=72.10 E-value=2.4 Score=37.63 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=19.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 36 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKST--LTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 789999999999998 4445555443
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=72.06 E-value=1.6 Score=36.69 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5688999999999984
No 271
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.91 E-value=1.3 Score=41.43 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.2
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 34456678556788999999999986
No 272
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.87 E-value=1.3 Score=41.70 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.4
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 34556778556788999999999986
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.86 E-value=2.8 Score=36.99 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||. ++-++..+..
T Consensus 29 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKST--IFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 789999999999998 4455555543
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.83 E-value=2 Score=36.53 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|||||..
T Consensus 8 ~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSL 23 (205)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 7789999999999984
No 275
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.69 E-value=2.1 Score=36.47 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+++.||+|+|||..
T Consensus 20 ~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 20 KTLVLIGASGVGRSHI 35 (197)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECcCCCCHHHH
Confidence 7899999999999984
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.63 E-value=1.5 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-+.+.||+|||||..+
T Consensus 10 ei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 78899999999999853
No 277
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=71.63 E-value=1.5 Score=41.31 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.5
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 34556778555688999999999986
No 278
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=71.49 E-value=2.7 Score=36.34 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=18.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.-+.+.||.|||||+ ++-++.-+.
T Consensus 36 e~~~iiG~NGsGKST--Llk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTT--LLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 789999999999998 444454443
No 279
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.45 E-value=1.8 Score=38.60 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 280
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=71.37 E-value=3.5 Score=30.81 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=32.9
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 363 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 363 (480)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 5678999999988899999999999999988888864
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.37 E-value=3.8 Score=38.33 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=26.6
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEEecCH
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTR 181 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil~Pt~ 181 (480)
+.-+++.|++|+|||...+-.+.+..... ..+.+++++.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 36789999999999976444343322211 1245788887543
No 282
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.32 E-value=1.3 Score=42.47 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.2
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 34556778555688999999999987
No 283
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.30 E-value=1.3 Score=41.51 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.4
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 34556778556788999999999986
No 284
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.26 E-value=1.4 Score=40.92 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.3
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 44556778555688999999999986
No 285
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=71.19 E-value=4.3 Score=29.51 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=32.0
Q ss_pred CcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 329 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 329 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
.+++|||.+-..+...+..|...|+.+..+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 889999999988999999999999998888898753
No 286
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.19 E-value=3.6 Score=35.89 Aligned_cols=39 Identities=15% Similarity=-0.079 Sum_probs=24.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil~P 179 (480)
.-+++.||+|+|||......+...+... ..+..++++.-
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 7899999999999986444333322211 01345677653
No 287
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.11 E-value=1.3 Score=41.81 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.5
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 44566778556788999999999986
No 288
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.98 E-value=1.4 Score=42.17 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=21.6
Q ss_pred hcccccCCCCccEEEEccCCCccchHh
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.+..++.|.+--++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 566778885556789999999999873
No 289
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=70.92 E-value=1.5 Score=41.52 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.5
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 44556778556788999999999986
No 290
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.89 E-value=2.3 Score=36.25 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=16.4
Q ss_pred cEEEEccCCCccchHhHHHHhh
Q 011667 142 NLIAQARNGSGKTTCFVLGMLS 163 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l~il~ 163 (480)
-.++.|+.|||||+....-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999864443333
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.79 E-value=3.2 Score=38.09 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|+|||..
T Consensus 26 ~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELV 41 (304)
T ss_dssp SCEEEESCTTSCHHHH
T ss_pred CcEEEECCCCchHHHH
Confidence 7899999999999975
No 292
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=70.75 E-value=17 Score=38.19 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=61.3
Q ss_pred EEEcCchhHHHHHH-HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 304 KVYCPDELAKVMVI-RDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 304 ~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.........|.... +..+.... .+..++|.++++.-|.+.++.+.. .|+.+..+.|+++...|.... .
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~ 172 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------A 172 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------H
T ss_pred EEEccCCcHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------C
Confidence 34445555554433 23232333 456899999999999988877654 589999999999987665432 2
Q ss_pred CcEEEEcc-cc-----c-------cCCCCCCCCEEEE
Q 011667 379 TQVLISTD-VL-----A-------RGFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~-----~-------~Gldi~~v~~Vi~ 402 (480)
.+|+++|+ -+ . ..++...+.++|.
T Consensus 173 ~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 173 ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 68999995 22 1 2356677777764
No 293
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=70.64 E-value=2.5 Score=36.83 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=18.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||.|||||+ ++-++.-+..
T Consensus 31 e~~~iiG~nGsGKST--Ll~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKST--LLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 788899999999998 4445555443
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.47 E-value=1.6 Score=40.05 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+.+.||+|||||..
T Consensus 127 e~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSML 142 (305)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 7899999999999974
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.46 E-value=2.2 Score=38.56 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCCcccCCCCHHHHHHHHhhc-CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.+.....+..-. .+..+ ..+..+--.-.+.+++.||+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567888877777766664310 11111 111111001114599999999999974
No 296
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=70.43 E-value=2.7 Score=36.71 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=18.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.-+.+.||.|||||+ ++-++..+.
T Consensus 35 e~~~i~G~nGsGKST--Ll~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTS--LLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 444454443
No 297
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.42 E-value=2.7 Score=37.60 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 33 e~~~liG~nGsGKST--Llk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKST--FLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 788999999999998 4445555443
No 298
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.36 E-value=1.7 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||..
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6789999999999985
No 299
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.32 E-value=4.6 Score=36.12 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCChHHHH-hhcccccCCC---CccEEEEccCCCccchHhH
Q 011667 110 ELLKGLYVEMKFQKPSKIQA-ISLPMILTPP---YRNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 110 ~l~~~l~~~~~~~~p~~~Q~-~~i~~il~~~---~~~~lv~a~TGsGKTl~~~ 158 (480)
.+.+.|.. .|+. |++- .++..++.+. .+.+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 56666643 6766 6653 3356666663 2369999999999998654
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=70.25 E-value=1.8 Score=36.46 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999973
No 301
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.24 E-value=1.3 Score=41.41 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.1
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34556678555688999999999986
No 302
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=70.23 E-value=1.8 Score=35.61 Aligned_cols=16 Identities=38% Similarity=0.572 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|+.|||||..
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999984
No 303
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.12 E-value=1.4 Score=41.37 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.6
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45666788555678899999999986
No 304
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=70.07 E-value=2 Score=39.43 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||. ++-++..+..
T Consensus 81 e~vaivG~sGsGKST--Ll~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKST--ILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCchHHH--HHHHHHcCCC
Confidence 889999999999998 4455555543
No 305
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.00 E-value=2.8 Score=36.93 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=19.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 33 e~~~l~G~nGsGKST--Ll~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTT--TLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 788999999999998 4445555443
No 306
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.95 E-value=1.5 Score=41.31 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.7
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 45667788555678999999999986
No 307
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=69.93 E-value=1.7 Score=35.62 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCce
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 248 (480)
+.++||.|+++.-+..+++.+... ++.+..++++.+..... .........+|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA-----ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCchhcC
Confidence 458999999999999988888765 45555666554322111 1111123467999994 22 235567777
Q ss_pred EEEEE
Q 011667 249 KILVY 253 (480)
Q Consensus 249 ~~lVi 253 (480)
++||.
T Consensus 105 ~~Vi~ 109 (163)
T 2hjv_A 105 SLVIN 109 (163)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77775
No 308
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=69.85 E-value=1.3 Score=41.66 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.6
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45566778555688999999999986
No 309
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=69.79 E-value=2.5 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 24 ~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIF 39 (235)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 7899999999999974
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=69.78 E-value=2.8 Score=37.36 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 34 e~~~liG~nGsGKST--Llk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKST--LINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 788999999999998 4445554443
No 311
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.65 E-value=1.7 Score=41.09 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=21.3
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 56677888555688899999999986
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=69.61 E-value=2.9 Score=37.64 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=19.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||.|||||+ ++-++..+..
T Consensus 46 e~~~i~G~nGsGKST--Llk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKST--VAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 788999999999998 4455555443
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=69.60 E-value=2.9 Score=37.42 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||.|||||+ ++-++..+..
T Consensus 51 ei~~liG~NGsGKST--Llk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKST--FLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHH--HHHHHHcCCC
Confidence 788999999999998 4455555443
No 314
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.52 E-value=27 Score=29.46 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=82.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc----cccCCCCCCCCEEEEc
Q 011667 328 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV----LARGFDQQQVNLIVNY 403 (480)
Q Consensus 328 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~----~~~Gldi~~v~~Vi~~ 403 (480)
..+++++++.......+.+.+.+.+..+..+.+++.. -....+.+ +...+|+|+-.. +..-+++| + |.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP---V-V~- 75 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP---S-IS- 75 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC---E-EE-
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC---E-EE-
Confidence 4578888888888887777777667777778888643 33334445 566789998743 33445543 3 32
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHH
Q 011667 404 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKA 476 (480)
Q Consensus 404 ~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 476 (480)
.+ .|..++++.+-++-+.+. -.+++-+ .+-...++.++..++..+.... .+.++.+..+++
T Consensus 76 -I~--------~s~~Dil~al~~a~~~~~-kIavvg~--~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~ 137 (196)
T 2q5c_A 76 -IK--------VTRFDTMRAVYNAKRFGN-ELALIAY--KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISK 137 (196)
T ss_dssp -EC--------CCHHHHHHHHHHHGGGCS-EEEEEEE--SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHH
T ss_pred -Ec--------CCHhHHHHHHHHHHhhCC-cEEEEeC--cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHH
Confidence 23 456677888877766553 2333333 2334456789999999988887 555566655544
No 315
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.37 E-value=1.7 Score=40.77 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=20.4
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 44566778555688999999999986
No 316
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.35 E-value=1.5 Score=42.06 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=20.9
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 45667788555688999999999986
No 317
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.22 E-value=3 Score=37.16 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 42 ei~~l~G~NGsGKST--Llk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTT--TLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred cEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 788999999999998 4445554443
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.99 E-value=2.1 Score=35.86 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||.+.
T Consensus 11 ~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 11 INILITGTPGTGKTSMA 27 (184)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 319
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=68.93 E-value=1.3 Score=41.78 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=20.1
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 45556678545678899999999986
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.84 E-value=1.8 Score=35.79 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 45889999999999853
No 321
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.76 E-value=1.9 Score=39.36 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 51 ~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6899999999999975
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.70 E-value=2.2 Score=38.93 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=22.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.-+++.|++|+|||......+ ..+... .+..++++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia-~~~~~~-~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQA-LQWGTA-MGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHH-HHHHHT-SCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHH-HHHHHH-cCCeEEEEe
Confidence 789999999999997533322 222211 133566665
No 323
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.69 E-value=2.1 Score=37.04 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|+|||..
T Consensus 24 ~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999984
No 324
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.49 E-value=1.9 Score=35.33 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=13.8
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999853
No 325
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.21 E-value=1.7 Score=41.31 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=20.8
Q ss_pred hcccccCCCCccEEEEccCCCccchHh
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
.+..++.|.+--++..|+||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345567785556889999999999873
No 326
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=68.16 E-value=1.5 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.4
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|+||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 44556778556788999999999986
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=68.06 E-value=2.5 Score=36.13 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=18.1
Q ss_pred cccccCCCCccEEEEccCCCccchH
Q 011667 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
++.+-.+ .-+.+.|++|||||..
T Consensus 15 ~~~~~~~--~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 15 VPRGSKT--FIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCSCCC--EEEEEEESTTSSHHHH
T ss_pred cccCCCC--eEEEEECCCCCCHHHH
Confidence 4555555 7789999999999984
No 328
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.92 E-value=3.3 Score=37.13 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=18.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 34 e~~~liG~nGsGKST--Ll~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKST--LLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCCC
Confidence 788999999999998 4445554443
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=67.83 E-value=2.2 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=15.8
Q ss_pred cccCCCCccEEEEccCCCccchH
Q 011667 134 MILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 134 ~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+-.| .-+.+.||+|||||..
T Consensus 16 ~i~~G--ei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVG--RVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CC--CEEEEECSTTSSHHHH
T ss_pred CCCCC--CEEEEECCCCCCHHHH
Confidence 34456 7899999999999984
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.83 E-value=2.8 Score=38.49 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+.+.||+|+|||+. +..+..+.... +.++++..
T Consensus 103 ~vi~lvG~nGsGKTTl--l~~Lagll~~~-~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTT--IAKLGRYYQNL-GKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHH--HHHHHHHHHTT-TCCEEEEC
T ss_pred eEEEEECCCCCcHHHH--HHHHHHHHHhc-CCEEEEEe
Confidence 7888999999999984 33333332222 33555554
No 331
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.00 E-value=1.1 Score=37.12 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=43.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeChHHHHHHHhcCccccCc
Q 011667 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (480)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 247 (480)
.+.++||.|+++.-+..++..+... ++.+..++++...... ..........+|+|+|. .+. ..+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA-----RGIDIPD 98 (170)
Confidence 3568999999999988888877664 3444445554332211 12222233567899983 221 2345556
Q ss_pred eEEEEE
Q 011667 248 LKILVY 253 (480)
Q Consensus 248 ~~~lVi 253 (480)
+++||.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 666654
No 332
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=67.68 E-value=1.9 Score=41.90 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=20.7
Q ss_pred hcccccCCCCccEEEEccCCCccchH
Q 011667 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
.+..++.|.+--++..|.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 45566788556788999999999986
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.67 E-value=2.4 Score=39.25 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.++++||||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999753
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.62 E-value=1.7 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||+..
T Consensus 5 ~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999853
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.62 E-value=3.5 Score=38.26 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|+|||+.
T Consensus 130 ~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7899999999999984
No 336
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.61 E-value=4.3 Score=39.66 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchHh
Q 011667 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (480)
+...|+++--.....+.+.... ..+. .....+ +.+++.||+|+|||..+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~-----~~~~----~~~~~~--~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIV-----ELIK----SKKMAG--RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHH-----HHHH----TTCCTT--CEEEEECCTTSSHHHHH
T ss_pred hhhchhhccCHHHHHHHHHHHH-----HHHH----hCCCCC--CeEEEECCCcCCHHHHH
Confidence 3445677666666666554310 0111 111223 68999999999999753
No 337
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=67.35 E-value=7 Score=35.11 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=18.9
Q ss_pred ccccCCCCccEEEEccCCCccchHhHH
Q 011667 133 PMILTPPYRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~~l 159 (480)
.-+..| .-+++.|++|+|||+....
T Consensus 25 ggl~~G--~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAG--TVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETT--SEEEEEESTTSSHHHHHHH
T ss_pred CCccCC--CEEEEEcCCCCCHHHHHHH
Confidence 334455 8899999999999975443
No 338
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=67.07 E-value=6.3 Score=36.68 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=28.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.-+++.|++|+|||...+-.+.+... .+..++|++.-- -..|+..++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS-CHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC-CHHHHHHHH
Confidence 77999999999999754333333222 345788887432 233444443
No 339
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.01 E-value=2.3 Score=36.13 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|+.|||||..
T Consensus 30 ~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 7899999999999984
No 340
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.98 E-value=9.1 Score=37.13 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=43.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeChHHHHHHHhcCccccCceEE
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 250 (480)
+.++||+||++.-+..+++.+... ++.+..+++.. .............+|+|+|.- +. ..+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~--R~~~~~~F~~g~~~vLVaT~v-----~e-~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT--FEREYPTIKQKKPDFILATDI-----AE-MGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS--CC--------CCCSEEEESSS-----TT-CCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh--HHHHHhhhcCCCceEEEECCh-----hh-eeeccC-ceE
Confidence 458999999999999998888775 45666666622 222233333446789999962 22 345666 777
Q ss_pred EE
Q 011667 251 LV 252 (480)
Q Consensus 251 lV 252 (480)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 341
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=66.84 E-value=3.5 Score=37.28 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.-+.+.||+|||||+ ++-++.-+.
T Consensus 48 e~~~liG~NGsGKST--Llk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTT--LLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCC
Confidence 788999999999998 444554443
No 342
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=66.78 E-value=11 Score=40.69 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=59.9
Q ss_pred EEEEcCchhHHHHHHHHHHHHhccc-----CCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHH
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
..+..+...+|.....-.+...... .+++||.++++..+..++..+... ++.+..+||+.+...+...+.
T Consensus 266 ~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~- 344 (936)
T 4a2w_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI- 344 (936)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH-
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc-
Confidence 3455566677765544444444332 678999999999888887777654 899999999986554332221
Q ss_pred HhcCCCcEEEEccc-c----ccC-C-CCCCCCEEEE
Q 011667 374 FKDGLTQVLISTDV-L----ARG-F-DQQQVNLIVN 402 (480)
Q Consensus 374 f~~g~~~iLv~T~~-~----~~G-l-di~~v~~Vi~ 402 (480)
+..+|+|+|.- + .++ + .+..+++||.
T Consensus 345 ---~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 345 ---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp ---HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred ---cCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 23679999942 2 222 3 5567788875
No 343
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.75 E-value=6.3 Score=38.30 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=24.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEec
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~P 179 (480)
.-+++.|++|+|||...+-.+.+.... +.++++++-
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 779999999999997544333333322 457888874
No 344
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.67 E-value=2.2 Score=35.20 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 67899999999999853
No 345
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.64 E-value=6.1 Score=36.81 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+.+|+++--.+.+.+.+... +. ..+...++++.||+|+|||..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~--~~-------------~~~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSL--SD-------------QPRDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTT--TT-------------CTTCCCCEEEECSTTSSHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHH--Hh-------------hCCCCCeEEEECCCCCCHHHH
Confidence 45677766677777766541 10 112113499999999999985
No 346
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.51 E-value=2.4 Score=36.36 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCChHHHHhhcccccCCC--CccEEEEccCCCccchH
Q 011667 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPP--YRNLIAQARNGSGKTTC 156 (480)
Q Consensus 110 ~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~--~~~~lv~a~TGsGKTl~ 156 (480)
.+.+.|.- .|+. +... ...+..++.+. .+.+++.||+|+|||..
T Consensus 29 ~I~~~l~y-q~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 29 PIVQFLRY-QQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp HHHHHHHH-TTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH
T ss_pred HHHHHHHH-cCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 45555532 2322 3333 33444444441 14699999999999975
No 347
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=66.46 E-value=10 Score=28.29 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=34.3
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCC-cEEEecCCCCHH
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATIQE 365 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~~~ 365 (480)
....+++|||.+-..+...+..|...|+ ++..+.|++...
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 4668899999998899999999999998 488999997654
No 348
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=66.44 E-value=5.7 Score=30.94 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=34.0
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHH
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQE 365 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~ 365 (480)
....+++|||.+-..+...+..|...|+. +..+.|++...
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W 120 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAW 120 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHHH
Confidence 46678999999988899999999999884 88999997643
No 349
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=66.44 E-value=2.4 Score=36.80 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+++.||.|+|||..
T Consensus 17 ~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSL 32 (219)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 7899999999999984
No 350
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.42 E-value=26 Score=31.88 Aligned_cols=92 Identities=11% Similarity=0.137 Sum_probs=62.9
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
..+..+....|.......+.. ...++||.++++..+..+++.+.. .+..+..++|+......... +. .
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 105 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--N 105 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--T
T ss_pred EEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--C
Confidence 455666677776554333333 367899999999999999888875 36789999999887654433 22 3
Q ss_pred CcEEEEcccc------ccCCCCCCCCEEEE
Q 011667 379 TQVLISTDVL------ARGFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~~~------~~Gldi~~v~~Vi~ 402 (480)
.+|+|+|.-. ...+++..+++||.
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 106 ADIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp CSEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 6899999421 12345667777774
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=66.20 E-value=2.6 Score=39.23 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-++++||||||||...
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 46899999999999753
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.01 E-value=3 Score=47.44 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=54.2
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCC
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (480)
++.+.+.+|.|||||+..+-.+.+... .+..++++.+-.+|.... +++++ +..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~---~~~~G----v~~----------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY---ARKLG----VDI----------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH---HHHTT----CCG-----------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH---HHHcC----CCH-----------------
Confidence 478999999999999874443333322 366899999877776553 44443 221
Q ss_pred CCCCCeEEEeChHHH---HHHHhcCccccCceEEEEEcCchhhh
Q 011667 220 PPVTAQVVIGTPGTI---KKWMSAKKLGFSRLKILVYDEADHML 260 (480)
Q Consensus 220 ~~~~~~I~v~Tp~~l---~~~l~~~~~~~~~~~~lViDEah~l~ 260 (480)
-++++..|..- +..+.. .+.-..+++||||.+--+.
T Consensus 1484 ----~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1484 ----DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ----GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCC
T ss_pred ----HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCC
Confidence 12667777443 222222 1222357899999887544
No 353
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=65.74 E-value=8.4 Score=30.57 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=33.7
Q ss_pred cccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCH
Q 011667 325 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQ 364 (480)
Q Consensus 325 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 364 (480)
.....+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 345678999999988899999999999985 8889998754
No 354
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.57 E-value=4 Score=36.47 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=19.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 47 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKST--IAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhccCC
Confidence 789999999999998 4445555443
No 355
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=65.57 E-value=4.4 Score=33.92 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=47.2
Q ss_pred CCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEE
Q 011667 150 GSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVV 227 (480)
Q Consensus 150 GsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~ 227 (480)
.+.|-.. ++-++... ..+.++||.|+++.-+..++..+... ++.+..++++.+..... ..........|+
T Consensus 29 ~~~K~~~-L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3456443 44444442 23568999999999998888887764 45555666554322211 111112346799
Q ss_pred EeChHHHHHHHhcCccccCceEEEEE
Q 011667 228 IGTPGTIKKWMSAKKLGFSRLKILVY 253 (480)
Q Consensus 228 v~Tp~~l~~~l~~~~~~~~~~~~lVi 253 (480)
|+|. .+. ..+++..+++||.
T Consensus 101 vaT~-~~~-----~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-VAA-----RGLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC-hhh-----cCCCcccCCEEEE
Confidence 9994 221 2455667777765
No 356
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=65.27 E-value=12 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=31.5
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 363 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 363 (480)
...+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 567899999998888899999999998 5999999885
No 357
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=65.18 E-value=4 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=33.2
Q ss_pred cCCcEEEEeCchhh--HHHHHHHHHhCCCcEEEecCCCCHH
Q 011667 327 KMGQTIIFVRTKNS--ASALHKALKDFGYEVTTIMGATIQE 365 (480)
Q Consensus 327 ~~~~~lVf~~s~~~--~~~l~~~L~~~~~~~~~l~~~~~~~ 365 (480)
...+++|||.+-.. +..++..|...|+++..+.|++...
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~W 110 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGW 110 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHHH
Confidence 56789999998877 8899999999999988999987543
No 358
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.14 E-value=2.8 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|||||+.
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7889999999999974
No 359
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=65.12 E-value=8.6 Score=35.00 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCcccCCCCHHHHHHHHhhcCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+.+|.++--.+..++.+... +. .+...++++.||+|+|||..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~--l~--------------~~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGY--VE--------------RKNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTT--TT--------------TTCCCCEEEESSSSSSHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHH--Hh--------------CCCCCeEEEECcCCcCHHHH
Confidence 45667666667777666541 11 12223599999999999975
No 360
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=64.98 E-value=24 Score=37.34 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=53.5
Q ss_pred EEEcCchhHHHHHH-HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 304 KVYCPDELAKVMVI-RDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 304 ~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.........|.... +..+.... .+.+++|.++|...|.+.+..+.. .|+.+..+.|+++...|.... .
T Consensus 96 IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~ 168 (997)
T 2ipc_A 96 IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------L 168 (997)
T ss_dssp EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------T
T ss_pred eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------C
Confidence 34455566665443 22223333 456899999999998888877654 599999999999977666554 3
Q ss_pred CcEEEEcc
Q 011667 379 TQVLISTD 386 (480)
Q Consensus 379 ~~iLv~T~ 386 (480)
++|+++|.
T Consensus 169 ~DIvyGTp 176 (997)
T 2ipc_A 169 ADVTYVTN 176 (997)
T ss_dssp SSEEEEEH
T ss_pred CCEEEECc
Confidence 68999995
No 361
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=64.79 E-value=2.4 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999854
No 362
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=64.71 E-value=2.6 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.++++.||+|+|||..+
T Consensus 73 ~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 68999999999999753
No 363
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.62 E-value=4.2 Score=36.04 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
..+.+.||.|+|||+ ++-++.-+..
T Consensus 27 e~~~liG~NGsGKST--Llk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKST--LLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCCC
Confidence 788999999999998 4445555443
No 364
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.58 E-value=2.9 Score=38.73 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.++++.||+|+|||..
T Consensus 47 ~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 47 GHILLEGVPGLAKTLS 62 (331)
T ss_dssp CCEEEESCCCHHHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999974
No 365
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.51 E-value=3.2 Score=36.16 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=10.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|||||..
T Consensus 28 ~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTV 43 (231)
T ss_dssp CEEEEECSCC----CH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7889999999999984
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.44 E-value=3.7 Score=38.61 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=25.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~L 183 (480)
.-+++.||+|+|||... +.++..+.. .+.+++++.....+
T Consensus 62 ~i~~I~GppGsGKSTLa-l~la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLA-LHAIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHHHHH--TTCCEEEEESSCCC
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeccccc
Confidence 78999999999999753 333333222 24468888755433
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=64.42 E-value=2.7 Score=38.57 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
.-+.+.||+|+|||+. +..+..+... .+.++++..
T Consensus 101 ~vi~lvG~nGsGKTTl--l~~Lag~l~~-~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTS--LGKLAHRLKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHHH-TTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHH--HHHHHHHHHH-cCCeEEEEe
Confidence 7889999999999984 3333332222 234566654
No 368
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=64.37 E-value=23 Score=37.42 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=61.4
Q ss_pred EEEcCchhHHHHHH-HHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 304 KVYCPDELAKVMVI-RDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 304 ~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.........|.... +..+.... .+.+++|.+++...|.+.++.+.. .|+.+..+.|+++...|.... .
T Consensus 128 Iaem~TGeGKTLa~~LP~~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~ 200 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCVLPAYLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------N 200 (922)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------H
T ss_pred EEEecCCCccHHHHHHHHHHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------C
Confidence 44455556664432 22222333 456899999999999888877654 599999999999987665443 2
Q ss_pred CcEEEEccc-c-----cc-------CCCCCCCCEEEE
Q 011667 379 TQVLISTDV-L-----AR-------GFDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~~-~-----~~-------Gldi~~v~~Vi~ 402 (480)
++|+++|+- + .. .+...++.++|.
T Consensus 201 ~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 201 ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 689999952 1 11 355667777764
No 369
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.36 E-value=4.1 Score=38.22 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=24.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
.-+++.|++|+|||...+..+..... .+.+++++.-.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E 98 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAE 98 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 78999999999999764433333222 24467877743
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=64.30 E-value=2.3 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|||||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5678999999999984
No 371
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=64.16 E-value=13 Score=38.48 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=65.3
Q ss_pred EEEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 302 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
...+..+....|.....-.+.+....++++++.++++.-+...++.+.. .|+.+..++|+....++ ..+.
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~ 114 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGD 114 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTT
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccC
Confidence 4566777888887665443444333578999999999999999988843 37899999998765432 1246
Q ss_pred CcEEEEcc-----ccccCCC-CCCCCEEEE
Q 011667 379 TQVLISTD-----VLARGFD-QQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-----~~~~Gld-i~~v~~Vi~ 402 (480)
.+|+|+|. .+..+.. +.++++||.
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 78999995 2233333 567788875
No 372
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.15 E-value=4.2 Score=37.86 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.++++.||+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999975
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.13 E-value=2.6 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.4
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
+++++.|+.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 589999999999998543
No 374
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.92 E-value=8.5 Score=46.74 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCChHHHH----hhcccccCCCCccEEEEccCCCccchHhHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQA----ISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~----~~i~~il~~~~~~~lv~a~TGsGKTl~~~l~ 160 (480)
..+.+.+.+ .|+. |.+.+. +....+... +.+++.||||||||.++-+.
T Consensus 875 ~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vR--hGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 875 KKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNIN--HGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTC--SEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHhe--eeEEEECCCCCCHHHHHHHH
Confidence 444444444 6776 555554 222334444 67999999999999976543
No 375
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=63.85 E-value=5.9 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=33.1
Q ss_pred cCCcEEEEeCch--hhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 327 KMGQTIIFVRTK--NSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 327 ~~~~~lVf~~s~--~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
...+++|||.+- ..+..++..|...|+++..+.|++..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 567899999987 58889999999999999999999754
No 376
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.81 E-value=4.6 Score=37.98 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=25.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt 180 (480)
+.+++.|++|+|||...+-.+.+... .+.+++++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCC
Confidence 78999999999999864443333322 24468887753
No 377
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.68 E-value=2.6 Score=38.82 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999975
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.59 E-value=2.8 Score=38.09 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999853
No 379
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.56 E-value=3.7 Score=36.06 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=17.6
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
.-+.+.||+|||||+ ++-++..+
T Consensus 32 e~~~i~G~nGsGKST--Ll~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSS--LLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcC
Confidence 789999999999998 34444443
No 380
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=63.54 E-value=4.1 Score=35.89 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=18.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 567899999999998 4455555443
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.52 E-value=2.8 Score=33.83 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-.++.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4678999999999974
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.52 E-value=2.7 Score=35.74 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999853
No 383
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=63.44 E-value=28 Score=25.88 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=35.4
Q ss_pred cCCcEEEEeC------chhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 011667 327 KMGQTIIFVR------TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 327 ~~~~~lVf~~------s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 373 (480)
...+++||.. ....|.++..+|...++....+.=......+..+.+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 5678999998 4899999999999998887766555455555555443
No 384
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.35 E-value=2.6 Score=38.58 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999853
No 385
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=63.24 E-value=6.1 Score=31.18 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.0
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCC-cEEEecCCCCH
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATIQ 364 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~~ 364 (480)
....+++|||.+-..+...+..|...|+ ++..+.|++..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 4667899999999899999999999998 59999999754
No 386
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=63.15 E-value=3 Score=39.78 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-+++.||||||||...
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 45789999999999753
No 387
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.06 E-value=3.6 Score=36.08 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhH
Q 011667 141 RNLIAQARNGSGKTTCFV 158 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~ 158 (480)
.-+.+.||+|||||....
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 789999999999998533
No 388
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.04 E-value=7 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+.+++.||+|+|||..
T Consensus 46 ~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSI 61 (250)
T ss_dssp SEEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 389
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=62.98 E-value=5 Score=32.71 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=50.3
Q ss_pred cchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeC
Q 011667 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGT 230 (480)
Q Consensus 153 KTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~T 230 (480)
|... +..++... .+.++||.|+++.-+..++..+... ++.+..+++........ ..........|+|+|
T Consensus 17 K~~~-l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 17 KYEC-LTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHHH-HHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHH-HHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 5433 44455442 3458999999999998888888764 44555555554322111 111112346799999
Q ss_pred hHHHHHHHhcCccccCceEEEEE
Q 011667 231 PGTIKKWMSAKKLGFSRLKILVY 253 (480)
Q Consensus 231 p~~l~~~l~~~~~~~~~~~~lVi 253 (480)
.- + ...+++..+++||.
T Consensus 88 ~~-----~-~~G~d~~~~~~Vi~ 104 (165)
T 1fuk_A 88 DL-----L-ARGIDVQQVSLVIN 104 (165)
T ss_dssp GG-----G-TTTCCCCSCSEEEE
T ss_pred Ch-----h-hcCCCcccCCEEEE
Confidence 42 1 23556677777765
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=62.91 E-value=3.2 Score=35.18 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||+..
T Consensus 5 ~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999853
No 391
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=62.90 E-value=2.9 Score=34.93 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.0
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999984
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.74 E-value=2.6 Score=39.27 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.++++.||+|+|||..
T Consensus 46 ~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCEEEECCGGGCTTHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5699999999999975
No 393
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=62.73 E-value=24 Score=30.63 Aligned_cols=85 Identities=25% Similarity=0.185 Sum_probs=56.7
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
..+..+....|.......+... ..++||+|+++..+..+.+.+...++. +..++|+.. ...+|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i 174 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPL 174 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCE
Confidence 3444456667766655434332 578999999999999999999888888 889988764 24578
Q ss_pred EEEcc-ccccCCCC--CCCCEEEEc
Q 011667 382 LISTD-VLARGFDQ--QQVNLIVNY 403 (480)
Q Consensus 382 Lv~T~-~~~~Gldi--~~v~~Vi~~ 403 (480)
+|+|. .+...++. ..+++||.-
T Consensus 175 ~v~T~~~l~~~~~~~~~~~~llIiD 199 (237)
T 2fz4_A 175 TVSTYDSAYVNAEKLGNRFMLLIFD 199 (237)
T ss_dssp EEEEHHHHHHTHHHHTTTCSEEEEE
T ss_pred EEEeHHHHHhhHHHhcccCCEEEEE
Confidence 88883 22222111 236666643
No 394
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.50 E-value=3 Score=35.51 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 67899999999999853
No 395
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.49 E-value=3 Score=35.41 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||..
T Consensus 26 ~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7899999999999974
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.34 E-value=4.9 Score=35.62 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6789999999999985
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=62.23 E-value=4.7 Score=32.84 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.9
Q ss_pred ccEEEEccCCCccch
Q 011667 141 RNLIAQARNGSGKTT 155 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl 155 (480)
.-+.+.||.|+|||.
T Consensus 34 e~v~L~G~nGaGKTT 48 (158)
T 1htw_A 34 IMVYLNGDLGAGKTT 48 (158)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 778899999999997
No 398
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.18 E-value=11 Score=37.12 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCCcccCCCCHHHHHHHHhhc-CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|+++.-.......+..-. .+..| ..+..+-....+.+++.||+|+|||+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHH
Confidence 3567888876677666665310 01111 111111101125699999999999985
No 399
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=62.14 E-value=3.7 Score=36.48 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=18.8
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++..+..
T Consensus 32 e~~~l~G~nGsGKST--Ll~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKST--LLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 788999999999998 4445554443
No 400
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.09 E-value=14 Score=38.22 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=60.2
Q ss_pred EEEcCchhHHHHHHHHHHHHhcc-----cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 011667 304 KVYCPDELAKVMVIRDRIFELGE-----KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 374 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 374 (480)
.+..+...+|.....-.+..... ..+++||.++++..+...+..+... ++.+..++|+.+...+...+
T Consensus 32 iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~--- 108 (696)
T 2ykg_A 32 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI--- 108 (696)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---
T ss_pred EEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---
Confidence 44555566665443322322221 1278999999999888888877654 78999999988643322222
Q ss_pred hcCCCcEEEEccc-----cccC-C-CCCCCCEEEEc
Q 011667 375 KDGLTQVLISTDV-----LARG-F-DQQQVNLIVNY 403 (480)
Q Consensus 375 ~~g~~~iLv~T~~-----~~~G-l-di~~v~~Vi~~ 403 (480)
. ...+|+|+|.- +..| + ++..+++||.-
T Consensus 109 ~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViD 143 (696)
T 2ykg_A 109 V-ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 143 (696)
T ss_dssp H-HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEE
T ss_pred c-cCCCEEEECHHHHHHHHhcCcccccccccEEEEe
Confidence 1 24789999942 2233 3 56778888853
No 401
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.01 E-value=3.1 Score=40.85 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.6
Q ss_pred CccEEEEccCCCccchHh
Q 011667 140 YRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (480)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999853
No 402
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.59 E-value=3 Score=34.91 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999853
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=61.51 E-value=3.6 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56899999999999853
No 404
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.39 E-value=3.3 Score=34.17 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.9
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|++|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999853
No 405
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=61.24 E-value=3.8 Score=37.78 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.||+|||||+.
T Consensus 91 ~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTT 106 (312)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCchHHHH
Confidence 6788999999999974
No 406
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.13 E-value=10 Score=35.15 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.9
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
++++.||+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999753
No 407
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=61.11 E-value=4 Score=35.08 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=46.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCce
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 248 (480)
+.++||.|+++.-+..+++.+... ++.+..++++.+..... .........+|+|+|.- + ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----A-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----T-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----h-hcCCCCccC
Confidence 458999999999999888888765 45555666654322111 11112234689999942 2 235667778
Q ss_pred EEEEE
Q 011667 249 KILVY 253 (480)
Q Consensus 249 ~~lVi 253 (480)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 408
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=61.09 E-value=9.2 Score=37.48 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=30.5
Q ss_pred CCCcccCCCCHHHHHHHHhhc-CCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 99 ATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~-~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
..+|+++.-..+..+.+.... .+..|..++...+ ...+.+++.||+|+|||+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~-----~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA-----RMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC-----CCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC-----CCCCeEEEECCCCCCHHHH
Confidence 457888876666666554311 1122322222111 1115699999999999985
No 409
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=60.95 E-value=4.4 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.5
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
+-+++.||+||||++....
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 6788999999999985433
No 410
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=60.43 E-value=5.8 Score=37.17 Aligned_cols=20 Identities=25% Similarity=0.006 Sum_probs=16.3
Q ss_pred CccEEEEccCCCccchHhHH
Q 011667 140 YRNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l 159 (480)
+.-+.+.||+|+|||.....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 37899999999999975443
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.34 E-value=3.7 Score=34.16 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999854
No 412
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=60.31 E-value=3.3 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHhH
Q 011667 142 NLIAQARNGSGKTTCFV 158 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~ 158 (480)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 413
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=60.26 E-value=3.2 Score=39.28 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-.++.||||||||..+
T Consensus 24 g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35779999999999754
No 414
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=60.11 E-value=5.7 Score=34.50 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.6
Q ss_pred ccEEEEccCCCccchHhHH
Q 011667 141 RNLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l 159 (480)
-++++.++.|+|||...+-
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 3699999999999987433
No 415
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=60.00 E-value=5.2 Score=37.59 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 31 e~~~llGpsGsGKST--LLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTT--LLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEECCCCchHHH--HHHHHhcCCC
Confidence 788999999999998 4455555443
No 416
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=59.94 E-value=5.6 Score=37.44 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=19.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||.|||||+ ++-++..+..
T Consensus 55 ei~~IiGpnGaGKST--Llr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKST--LIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEEcCCCchHHH--HHHHHhcCCC
Confidence 789999999999998 4555655554
No 417
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=59.93 E-value=36 Score=25.46 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=35.0
Q ss_pred cCCcEEEEe------CchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 011667 327 KMGQTIIFV------RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 372 (480)
Q Consensus 327 ~~~~~lVf~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 372 (480)
...+++||. ++...|..+..+|...++....+.=......+..+.+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 567999999 5788999999999999888776655555555555544
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=59.89 E-value=3.4 Score=34.68 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67999999999999853
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.83 E-value=3.7 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.75 E-value=4.2 Score=37.80 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999984
No 421
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=59.71 E-value=4 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.104 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
.-+.+.||+|+|||...
T Consensus 26 ~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLA 42 (231)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 422
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=59.67 E-value=7.5 Score=32.71 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeChHHHHHHHhcCccccCce
Q 011667 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (480)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 248 (480)
+.++||.|+++.-+..++..+... ++.+..+++........ .........+|+|+|. . +. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~----~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-V----AS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-H----HH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-c----hh-cCCCcccC
Confidence 347999999999999988888765 45555666554322111 1111122467999993 2 22 25567777
Q ss_pred EEEEE
Q 011667 249 KILVY 253 (480)
Q Consensus 249 ~~lVi 253 (480)
++||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77765
No 423
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=59.44 E-value=20 Score=34.85 Aligned_cols=68 Identities=29% Similarity=0.243 Sum_probs=51.4
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQV 381 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~~i 381 (480)
..+..+....|.......+... ..++||.|+++..+..+++.+...+.. +..+||+... ..+|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~I 174 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPL 174 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCE
Confidence 4455566677766555444443 579999999999999999999888899 9999998752 3578
Q ss_pred EEEcc
Q 011667 382 LISTD 386 (480)
Q Consensus 382 Lv~T~ 386 (480)
+|+|.
T Consensus 175 vv~T~ 179 (472)
T 2fwr_A 175 TVSTY 179 (472)
T ss_dssp EEEEH
T ss_pred EEEEc
Confidence 88874
No 424
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.41 E-value=3.4 Score=35.33 Aligned_cols=16 Identities=31% Similarity=0.167 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-+.+.|++|||||+.
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5688999999999974
No 425
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=59.40 E-value=3.3 Score=42.93 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=57.2
Q ss_pred EEEcCchhHHHHHHHHHHHHhcc------cCCcEEEEeCchhhHHHH-HHHHHhCC---CcEEEecCCCCHHHHHHHHHH
Q 011667 304 KVYCPDELAKVMVIRDRIFELGE------KMGQTIIFVRTKNSASAL-HKALKDFG---YEVTTIMGATIQEERDKIVKE 373 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~------~~~~~lVf~~s~~~~~~l-~~~L~~~~---~~~~~l~~~~~~~~r~~~~~~ 373 (480)
.+..+....|.....-.+..... ..+++||.++++.-+..+ ++.|.... +.+..++|+.....+...+.
T Consensus 26 ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~- 104 (699)
T 4gl2_A 26 IICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV- 104 (699)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH-
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh-
Confidence 44455555665443332222211 227899999999998888 87776653 89999999986554333222
Q ss_pred HhcCCCcEEEEcc-ccc-----------cCCCCCCCCEEEE
Q 011667 374 FKDGLTQVLISTD-VLA-----------RGFDQQQVNLIVN 402 (480)
Q Consensus 374 f~~g~~~iLv~T~-~~~-----------~Gldi~~v~~Vi~ 402 (480)
+..+|+|+|. .+. ..+.+..+++||.
T Consensus 105 ---~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 105 ---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 142 (699)
T ss_dssp ---HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEE
T ss_pred ---cCCCEEEECHHHHHHHHhccccccccceecccCcEEEE
Confidence 5678999994 222 2356677888885
No 426
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.21 E-value=41 Score=33.44 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred EEEEEcCchhHHHHHHHHHHHH-hcc------cCCcEEEEeCchhhHHHHHHHHHhC--------CCcEEEecCCCCHHH
Q 011667 302 QYKVYCPDELAKVMVIRDRIFE-LGE------KMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEE 366 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~-~~~------~~~~~lVf~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~ 366 (480)
..++..+....|.....-.+.. ... ...++||.++++..+..+++.+... ...+..++|+.....
T Consensus 113 ~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (563)
T 3i5x_A 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192 (563)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH
Confidence 4455566666776542221222 111 1348999999999999998888652 455778888876544
Q ss_pred HHHHHHHHhcCCCcEEEEcccc-----cc--CCCCCCCCEEEE
Q 011667 367 RDKIVKEFKDGLTQVLISTDVL-----AR--GFDQQQVNLIVN 402 (480)
Q Consensus 367 r~~~~~~f~~g~~~iLv~T~~~-----~~--Gldi~~v~~Vi~ 402 (480)
.+..+..+..+|+|+|.-. .+ ...+..+.+||.
T Consensus 193 ---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 193 ---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp ---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 3344555677899999532 11 223556677664
No 427
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=59.10 E-value=5.9 Score=37.24 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=19.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 30 e~~~llGpnGsGKST--LLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTT--TLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEEcCCCchHHH--HHHHHHCCCC
Confidence 788999999999998 4555555543
No 428
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=59.06 E-value=5.8 Score=37.20 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=19.0
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 42 e~~~llGpnGsGKST--LLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTT--ILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCCC
Confidence 788999999999998 4445555443
No 429
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.05 E-value=10 Score=37.69 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=15.2
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
+.+++.||+|+|||..+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999863
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.92 E-value=4.8 Score=35.69 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=17.0
Q ss_pred cCCCCccEEEEccCCCccchHh
Q 011667 136 LTPPYRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 136 l~~~~~~~lv~a~TGsGKTl~~ 157 (480)
+.| ..+++.|++|||||...
T Consensus 46 l~g--~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNG--RSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTT--CCEEEECSTTSCHHHHH
T ss_pred cCC--CEEEEECCCCCCHHHHH
Confidence 346 89999999999999853
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.71 E-value=3.6 Score=35.29 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.7
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 432
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=58.58 E-value=7.5 Score=30.55 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=33.5
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCHH
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQE 365 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~ 365 (480)
...+++|||.+-..+..++..|...|+. +..+.|++...
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W 124 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAW 124 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHH
Confidence 5678999999988888999999999985 99999997543
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.56 E-value=4.6 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.3
Q ss_pred cEEEEccCCCccchHhHH
Q 011667 142 NLIAQARNGSGKTTCFVL 159 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~~l 159 (480)
.+++.||+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999985433
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=58.55 E-value=6.1 Score=37.45 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 30 e~~~llGpsGsGKST--LLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKST--LLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEEcCCCchHHH--HHHHHHcCCC
Confidence 788999999999998 4555555543
No 435
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=58.50 E-value=3.4 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.7
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 436
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=58.48 E-value=6.1 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=27.1
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+++..++|.|||.+++-.++..+.. +.+++|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 478999999999999876666665544 56788884
No 437
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=58.30 E-value=10 Score=36.79 Aligned_cols=48 Identities=17% Similarity=-0.095 Sum_probs=27.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (480)
.-+++.|++|+|||...+-.+.+.... .+..++++..-- -..|+..++
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~-~~~~l~~R~ 248 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEM-PAAQLTLRM 248 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSS-CHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCC-CHHHHHHHH
Confidence 778999999999997533333332221 144677776432 223444443
No 438
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=58.23 E-value=10 Score=34.75 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=14.2
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+++.+++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 6788999999999974
No 439
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=58.14 E-value=8.3 Score=35.58 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=13.3
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
-+.+.||+|||||+.
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 440
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.07 E-value=6.3 Score=35.22 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=18.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
..+.+.||.|||||+ ++-++.-+.
T Consensus 31 e~~~i~G~NGsGKST--Llk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTT--LLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 444454443
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=58.07 E-value=3.8 Score=38.54 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=21.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~ 178 (480)
..+.+.||+|+|||+. +..+..+.... +.++++..
T Consensus 158 ~vi~lvG~nGsGKTTl--l~~Lag~l~~~-~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS--LGKLAHRLKNE-GTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHHHT-TCCEEEEC
T ss_pred eEEEEEcCCCChHHHH--HHHHHhhcccc-CCEEEEec
Confidence 7889999999999984 33333322222 34566554
No 442
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=57.94 E-value=6.2 Score=37.22 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=24.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~ 181 (480)
.-+++.|++|+|||...+-.+.+... .+..++++..-.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence 78999999999999754333332222 234677777443
No 443
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.89 E-value=4.1 Score=33.75 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.4
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|+.|||||..
T Consensus 6 ~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999984
No 444
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=57.83 E-value=23 Score=34.87 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred EEEcCchhHHHHHHHHHHHHhcc-cCCcEEEEeCchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhcCC
Q 011667 304 KVYCPDELAKVMVIRDRIFELGE-KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGL 378 (480)
Q Consensus 304 ~~~~~~~~~k~~~l~~~l~~~~~-~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~ 378 (480)
.+..+....|.......+..... ..+++||.|+++.-+..+++.+... +..+..++|+.+..++ ..+.
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~ 204 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKND 204 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccC
Confidence 45556666776554443333332 3459999999999999999999765 2478899998776554 3577
Q ss_pred CcEEEEcc-ccccC--CCCCCCCEEEE
Q 011667 379 TQVLISTD-VLARG--FDQQQVNLIVN 402 (480)
Q Consensus 379 ~~iLv~T~-~~~~G--ldi~~v~~Vi~ 402 (480)
.+|+|+|. .+... ..+.++.+||.
T Consensus 205 ~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp CSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred CcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 89999995 23222 33455666664
No 445
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.80 E-value=4.5 Score=34.22 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999853
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.77 E-value=4.6 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.7
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-.++.|++|||||..
T Consensus 27 g~~~i~G~NGsGKStl 42 (182)
T 3kta_A 27 GFTAIVGANGSGKSNI 42 (182)
T ss_dssp SEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 3678999999999984
No 447
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=57.74 E-value=6.4 Score=37.05 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=18.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~ 166 (480)
.-+.+.||+|||||+ ++-++.-+.
T Consensus 30 e~~~llGpnGsGKST--LLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKST--LLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHH--HHHHHHTSS
T ss_pred CEEEEECCCCchHHH--HHHHHhcCC
Confidence 788999999999998 444454443
No 448
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.58 E-value=3.6 Score=35.73 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999853
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.57 E-value=4.9 Score=33.55 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=22.9
Q ss_pred EEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEecCHHHHHHHHHHHH
Q 011667 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (480)
++|.|++|||||.-+.- +. .. +..++++......-..+.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~-la---~~---~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI---GD---APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH---CS---CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHH-HH---hc---CCCeEEEecCCCCCHHHHHHHH
Confidence 68999999999964322 21 11 3357888765433333443343
No 450
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.56 E-value=3.8 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.8
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 13 ~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67899999999999853
No 451
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=57.19 E-value=47 Score=33.28 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=59.8
Q ss_pred EEEEEcCchhHHHHHHHHHHHH-hc------ccCCcEEEEeCchhhHHHHHHHHHhC--------CCcEEEecCCCCHHH
Q 011667 302 QYKVYCPDELAKVMVIRDRIFE-LG------EKMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEE 366 (480)
Q Consensus 302 ~~~~~~~~~~~k~~~l~~~l~~-~~------~~~~~~lVf~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~ 366 (480)
..++..+....|.....-.+.. .. ....++||.++++..+..++..+... ...+..++|+.....
T Consensus 62 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 141 (579)
T 3sqw_A 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141 (579)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH
Confidence 3455566666675542211221 11 12348999999999999988888652 456778888876543
Q ss_pred HHHHHHHHhcCCCcEEEEcccc-----cc--CCCCCCCCEEEE
Q 011667 367 RDKIVKEFKDGLTQVLISTDVL-----AR--GFDQQQVNLIVN 402 (480)
Q Consensus 367 r~~~~~~f~~g~~~iLv~T~~~-----~~--Gldi~~v~~Vi~ 402 (480)
.+..+..+..+|+|+|.-. .+ ...+..+++||.
T Consensus 142 ---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 142 ---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp ---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 3444555667899999521 11 234556777664
No 452
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=57.16 E-value=13 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.0
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 364 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 364 (480)
....+++|||.+-..+...+..|...|+....+.|++..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 366789999999989999999999999865788888753
No 453
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=57.15 E-value=7.6 Score=37.11 Aligned_cols=40 Identities=13% Similarity=-0.132 Sum_probs=25.4
Q ss_pred CccEEEEccCCCccchHhHHHHhhccCCC---CCCCeEEEEec
Q 011667 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~~l~il~~l~~~---~~~~~~lil~P 179 (480)
+.-+.+.||+|+|||......++..+... ..+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 47899999999999986443333333221 12456777764
No 454
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=57.11 E-value=6.6 Score=37.10 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||.|||||+ ++-++.-+..
T Consensus 38 e~~~llGpnGsGKST--LLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTT--TLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEECCCCChHHH--HHHHHHcCCC
Confidence 788999999999998 4445555443
No 455
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=57.09 E-value=23 Score=24.83 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=30.0
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 363 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 363 (480)
....+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35678999999988899999999999885 5555 7654
No 456
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=57.07 E-value=4 Score=33.82 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=10.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999854
No 457
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=56.98 E-value=4.2 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|++|||||..
T Consensus 26 ~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTL 41 (211)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999974
No 458
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.92 E-value=3.8 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999853
No 459
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=56.90 E-value=4.5 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67899999999999853
No 460
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=56.79 E-value=5.7 Score=35.60 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=17.5
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
.-+.+.||+|+|||+ ++-++.-+
T Consensus 47 e~~~l~G~NGsGKST--Llk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKST--LSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHH--HHHHHHTC
T ss_pred CEEEEECCCCCCHHH--HHHHHhCC
Confidence 789999999999998 34444443
No 461
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.57 E-value=4.1 Score=34.59 Aligned_cols=15 Identities=40% Similarity=0.279 Sum_probs=13.2
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
.+.+.|+.|||||+.
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 462
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=56.52 E-value=5.9 Score=34.49 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999854
No 463
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.42 E-value=4.2 Score=40.16 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.||+|+|||+.+
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 67999999999999853
No 464
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=56.41 E-value=5.8 Score=35.14 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=17.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSR 164 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~ 164 (480)
.-+.+.||.|||||+ ++-++.-
T Consensus 30 e~~~l~G~nGsGKST--Llk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKST--LGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHH--HHHHHHT
T ss_pred CEEEEECCCCCCHHH--HHHHHhC
Confidence 788999999999998 3444444
No 465
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.24 E-value=8.2 Score=43.28 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=20.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~ 168 (480)
..+-++|+||||||. ++-++.++...
T Consensus 1106 e~vaIVG~SGsGKST--L~~lL~rl~~p 1131 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKST--VVALLERFYDT 1131 (1321)
T ss_dssp CEEEEECSTTSSTTS--HHHHHTTSSCC
T ss_pred CEEEEECCCCChHHH--HHHHHhcCccC
Confidence 889999999999998 45556665543
No 466
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=56.20 E-value=8.3 Score=38.97 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||. ++-++..+..
T Consensus 370 ~~~~ivG~sGsGKST--ll~~l~g~~~ 394 (582)
T 3b5x_A 370 KTVALVGRSGSGKST--IANLFTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 789999999999998 4445555544
No 467
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.10 E-value=5.2 Score=34.51 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+.+.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999853
No 468
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=56.07 E-value=4.5 Score=33.71 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.0
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999853
No 469
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=55.85 E-value=4.7 Score=40.92 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=13.9
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 470
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=55.85 E-value=7 Score=36.94 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=18.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 30 e~~~llGpnGsGKST--LLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTT--TLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHH--HHHHHHTSSC
T ss_pred CEEEEECCCCcHHHH--HHHHHHcCCC
Confidence 788999999999998 4445554443
No 471
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.77 E-value=6.7 Score=46.97 Aligned_cols=48 Identities=23% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCChHHHHh----hcccccCCCCccEEEEccCCCccchHhHHH
Q 011667 109 PELLKGLYVEMKFQKPSKIQAI----SLPMILTPPYRNLIAQARNGSGKTTCFVLG 160 (480)
Q Consensus 109 ~~l~~~l~~~~~~~~p~~~Q~~----~i~~il~~~~~~~lv~a~TGsGKTl~~~l~ 160 (480)
..+.+.+.+ .|+. +++.+.. ....+... +.+++.||||||||.++-+.
T Consensus 892 ~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r--~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 892 QCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQ--QALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHC--SEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhc--ceEEEECCCCCCHHHHHHHH
Confidence 344445543 5665 5555432 22333334 67999999999999976543
No 472
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.57 E-value=4.3 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.9
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999854
No 473
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.39 E-value=6.4 Score=33.16 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.1
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+.+.|++|+|||..
T Consensus 2 ~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCEEEESCCSSCHHHH
T ss_pred CEEEEECCCCChHHHH
Confidence 5688999999999984
No 474
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.37 E-value=4.5 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.6
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999853
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.34 E-value=4.6 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.7
Q ss_pred CccEEEEccCCCccchHh
Q 011667 140 YRNLIAQARNGSGKTTCF 157 (480)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (480)
..++++.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999854
No 476
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.34 E-value=4.1 Score=34.52 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.3
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999985
No 477
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=55.31 E-value=4.4 Score=35.66 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=14.5
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
..+++.|+.|||||+.
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6799999999999984
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.18 E-value=4 Score=38.63 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.0
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-.++.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4678999999999984
No 479
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.05 E-value=4.5 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.2
Q ss_pred cEEEEccCCCccchH
Q 011667 142 NLIAQARNGSGKTTC 156 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (480)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999985
No 480
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.01 E-value=5 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.1
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|+.|||||...
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 78999999999999853
No 481
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=54.81 E-value=5.6 Score=37.23 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||+ ++-++.-+..
T Consensus 27 e~~~llGpnGsGKST--LLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTL--FLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHH--HHHHHHTSSC
T ss_pred CEEEEECCCCccHHH--HHHHHHcCCC
Confidence 788999999999998 4555555543
No 482
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=54.73 E-value=12 Score=29.34 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=32.6
Q ss_pred ccCCcEEEEeCchhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011667 326 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 363 (480)
Q Consensus 326 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 363 (480)
....+++|||.+=..+...+..|...|+ ++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567899999998888899999999998 5889999984
No 483
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=54.54 E-value=8.1 Score=39.22 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=19.3
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||. ++-++..+..
T Consensus 382 ~~~~ivG~sGsGKST--ll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTT--IVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCcC
Confidence 889999999999998 4455555543
No 484
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.38 E-value=15 Score=33.40 Aligned_cols=41 Identities=20% Similarity=0.014 Sum_probs=23.9
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEEe--cCHHHH
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELA 184 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil~--Pt~~La 184 (480)
..+++.+++|+|||......+. .+.. .+.+++++. +.+..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~-~~~~--~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY-FYKK--KGFKVGLVGADVYRPAA 141 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH-HHHH--TTCCEEEEECCCSSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--CCCeEEEEecCCCCHHH
Confidence 6788899999999975333221 1221 244666665 444443
No 485
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=54.36 E-value=11 Score=29.70 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.8
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCCCc-EEEecCCCCH
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQ 364 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 364 (480)
...+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4678999999988899999999999984 8899998754
No 486
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=54.22 E-value=1.1e+02 Score=26.41 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=80.9
Q ss_pred cCCcEEEEeCchhhHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc----cccCCCCCCCCEE
Q 011667 327 KMGQTIIFVRTKNSASALHKALKDFG--YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV----LARGFDQQQVNLI 400 (480)
Q Consensus 327 ~~~~~lVf~~s~~~~~~l~~~L~~~~--~~~~~l~~~~~~~~r~~~~~~f~~g~~~iLv~T~~----~~~Gldi~~v~~V 400 (480)
...++++.++.........+.+.+.+ ..+..+.+.+..... .+.+....+..+|+|+-.. +..-+++| |
T Consensus 11 ~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~-~a~~~~~~~~~dVIISRGgta~~Lr~~~~iP----V 85 (225)
T 2pju_A 11 DDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVT-YIRKKLANERCDAIIAAGSNGAYLKSRLSVP----V 85 (225)
T ss_dssp --CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHH-HHHHHTTTSCCSEEEEEHHHHHHHHTTCSSC----E
T ss_pred cCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHH-HHHHHHhcCCCeEEEeCChHHHHHHhhCCCC----E
Confidence 35677888887777775555555544 456666677643222 2223344455889998743 33445543 3
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCceeEEEEeeCCccHHHHHHHHHHhCCcceecC-CCHHHHHHHHHH
Q 011667 401 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKA 476 (480)
Q Consensus 401 i~~~~p~~~~~~~~~s~~~y~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 476 (480)
|. .+ .|..++++.+-++.+.+. -.+++-+ .+-...+..++..++..+.... .+.++.+..+++
T Consensus 86 V~--I~--------vs~~Dil~aL~~a~~~~~-kIavVg~--~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~ 149 (225)
T 2pju_A 86 IL--IK--------PSGYDVLQFLAKAGKLTS-SIGVVTY--QETIPALVAFQKTFNLRLDQRSYITEEDARGQINE 149 (225)
T ss_dssp EE--EC--------CCHHHHHHHHHHTTCTTS-CEEEEEE--SSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred EE--ec--------CCHHHHHHHHHHHHhhCC-cEEEEeC--chhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHH
Confidence 32 23 456778888877766553 2333333 3445567889999999999888 777777776654
No 487
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.81 E-value=4.8 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.7
Q ss_pred ccEEEEccCCCccchHh
Q 011667 141 RNLIAQARNGSGKTTCF 157 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (480)
..+++.|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 56899999999999853
No 488
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=53.80 E-value=8.4 Score=39.06 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=19.2
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCC
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~ 167 (480)
.-+.+.||+|||||. ++-++..+..
T Consensus 371 ~~~~ivG~sGsGKST--Ll~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKST--VLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCcC
Confidence 789999999999998 4455555543
No 489
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=53.78 E-value=4.9 Score=33.53 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.4
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 490
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=53.75 E-value=5.2 Score=39.30 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=21.4
Q ss_pred ccEEEEccCCCccchHhHHHHhhccCCCCCCCeEEEE
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l~~~~~~~~~lil 177 (480)
..+.+.|++|+|||+. +-.|..+... .+.++++.
T Consensus 294 eVI~LVGpNGSGKTTL--l~~LAgll~~-~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT--IGKLARQFEQ-QGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHHH-TTCCEEEE
T ss_pred eEEEEECCCcccHHHH--HHHHHHHhhh-cCCeEEEe
Confidence 6788999999999984 3333332221 23466665
No 491
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=53.63 E-value=5 Score=38.89 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.6
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+++++.||+|+|||..
T Consensus 51 ~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 51 KNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 6899999999999985
No 492
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=53.58 E-value=4.5 Score=34.69 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.6
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 493
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.52 E-value=6 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.162 Sum_probs=13.3
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
+-+.+.|+.|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTL 20 (169)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3578899999999974
No 494
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.49 E-value=15 Score=38.46 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=29.4
Q ss_pred CCCCcccCCCCHHHHHHHHhh--cCCCCChHHHHhhcccccCCCCccEEEEccCCCccchH
Q 011667 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (480)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~~~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (480)
+..+|++++=.....+.+... +.+..|.-++...+. ..+.+|+.||+|+|||+.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~-----~p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-----PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC-----CCCEEEEECCTTSCHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC-----CCCeEEEECCCCCCHHHH
Confidence 456787775444444444321 122233333222111 126899999999999985
No 495
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=53.47 E-value=18 Score=39.25 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=59.5
Q ss_pred EEEEcCchhHHHHHHHHHHHHhcccCCcEEEEeCchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011667 303 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 382 (480)
Q Consensus 303 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~iL 382 (480)
.++..+....|.....-.+......+.++|+.++++.-+...+..|....-.+..++|+.+. +...+|+
T Consensus 104 vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~Iv 172 (1010)
T 2xgj_A 104 VLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCL 172 (1010)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEE
T ss_pred EEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEE
Confidence 34555666666554333344444467899999999999999999887764488899998753 2356788
Q ss_pred EEcc-----ccccC-CCCCCCCEEEE
Q 011667 383 ISTD-----VLARG-FDQQQVNLIVN 402 (480)
Q Consensus 383 v~T~-----~~~~G-ldi~~v~~Vi~ 402 (480)
|+|. .+.+| ..+.++.+||.
T Consensus 173 V~Tpe~L~~~L~~~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 173 VMTTEILRSMLYRGSEVMREVAWVIF 198 (1010)
T ss_dssp EEEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred EEcHHHHHHHHHcCcchhhcCCEEEE
Confidence 8885 22233 44556777764
No 496
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=52.60 E-value=5.3 Score=33.47 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.0
Q ss_pred EEEEccCCCccchHh
Q 011667 143 LIAQARNGSGKTTCF 157 (480)
Q Consensus 143 ~lv~a~TGsGKTl~~ 157 (480)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999853
No 497
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=52.35 E-value=5.3 Score=34.56 Aligned_cols=16 Identities=44% Similarity=0.455 Sum_probs=13.6
Q ss_pred cEEEEccCCCccchHh
Q 011667 142 NLIAQARNGSGKTTCF 157 (480)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (480)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=52.30 E-value=5.4 Score=34.01 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred ccEEEEccCCCccchH
Q 011667 141 RNLIAQARNGSGKTTC 156 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (480)
.-.++.||+|+|||..
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 5678999999999985
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=52.26 E-value=7.5 Score=35.31 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.7
Q ss_pred ccEEEEccCCCccchHhHHHHhhcc
Q 011667 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (480)
Q Consensus 141 ~~~lv~a~TGsGKTl~~~l~il~~l 165 (480)
.-+.+.||.|||||. ++-++..+
T Consensus 65 e~~~i~G~NGsGKST--Llk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTS--LLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHH--HHHHHTTS
T ss_pred CEEEEECCCCCcHHH--HHHHHhcC
Confidence 788999999999998 34444444
No 500
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=52.00 E-value=53 Score=23.95 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=35.2
Q ss_pred CCcEEEEe------CchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHh
Q 011667 328 MGQTIIFV------RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 375 (480)
Q Consensus 328 ~~~~lVf~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~ 375 (480)
..+++||. +....|..+...|...++.+..+.-...+..+..+...+.
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 45788988 4678899999999988888777766656665655555443
Done!