Your job contains 1 sequence.
>011668
MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP
PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE
LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG
YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
VNQRYSGREQEPSRGPSRSAEPRIREDRHGDRDRERSRERGRDREREREKSLELSHDRPR
DRDHRDDRHHRDRDRTRDRERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDRDKERD
RDRTRERERDRDYEVGDPDRDRGYSRDRDSDYDRIDSKHERDRHGERDYDPTDQEDDRGW
YDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011668
(480 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 930 5.1e-104 2
ZFIN|ZDB-GENE-040825-2 - symbol:snrnp70 "small nuclear ri... 526 1.4e-56 2
UNIPROTKB|Q66II8 - symbol:snrnp70 "U1 small nuclear ribon... 521 2.3e-56 2
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 509 2.9e-56 2
MGI|MGI:98341 - symbol:Snrnp70 "small nuclear ribonucleop... 529 6.1e-56 2
UNIPROTKB|I3LNE5 - symbol:SNRNP70 "Uncharacterized protei... 529 1.3e-55 2
UNIPROTKB|P08621 - symbol:SNRNP70 "U1 small nuclear ribon... 529 1.3e-55 2
UNIPROTKB|F6V5G7 - symbol:SNRNP70 "Uncharacterized protei... 529 1.3e-55 2
UNIPROTKB|Q1RMR2 - symbol:SNRNP70 "U1 small nuclear ribon... 529 1.3e-55 2
UNIPROTKB|E2QRU8 - symbol:SNRNP70 "Uncharacterized protei... 529 1.3e-55 2
GENEDB_PFALCIPARUM|MAL13P1.338 - symbol:MAL13P1.338 "u1 s... 414 2.6e-51 2
UNIPROTKB|Q8ID37 - symbol:MAL13P1.338 "U1 small nuclear r... 414 2.6e-51 2
FB|FBgn0016978 - symbol:snRNP-U1-70K "small ribonucleopro... 445 3.7e-48 2
DICTYBASE|DDB_G0268004 - symbol:snrp70 "U1 small nuclear ... 436 4.7e-48 2
ASPGD|ASPL0000006999 - symbol:AN6903 species:162425 "Emer... 376 2.5e-41 2
POMBASE|SPAC19A8.13 - symbol:usp101 "U1 snRNP-associated ... 415 7.8e-39 1
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd... 414 9.9e-39 1
RGD|1307120 - symbol:Snrnp70 "small nuclear ribonucleopro... 377 8.3e-35 1
UNIPROTKB|J9NZ89 - symbol:SNRNP70 "Uncharacterized protei... 373 2.2e-34 1
RGD|1310724 - symbol:Snrnp35 "small nuclear ribonucleopro... 234 1.9e-26 2
UNIPROTKB|Q5U1W5 - symbol:Snrnp35 "U11/U12 small nuclear ... 234 1.9e-26 2
MGI|MGI:1923417 - symbol:Snrnp35 "small nuclear ribonucle... 236 8.2e-26 2
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 239 2.1e-25 2
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 238 7.1e-25 2
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 239 1.2e-24 2
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 245 2.4e-24 2
UNIPROTKB|Q16560 - symbol:SNRNP35 "U11/U12 small nuclear ... 231 6.2e-24 2
ZFIN|ZDB-GENE-050706-77 - symbol:snrnp35 "small nuclear r... 239 1.0e-23 2
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 227 3.4e-23 2
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 239 3.5e-20 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 165 6.1e-19 2
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 165 5.3e-18 2
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 163 5.6e-18 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 167 5.2e-15 2
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 165 1.3e-14 2
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 165 1.5e-14 2
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 163 1.5e-14 2
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 165 1.5e-14 2
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 165 1.5e-14 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 149 2.7e-14 2
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 171 3.3e-14 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 155 3.7e-14 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 155 3.7e-14 2
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 165 7.3e-14 2
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 7.6e-14 2
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 165 7.9e-14 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 1.6e-13 2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 1.6e-13 2
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 155 1.6e-13 2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 1.6e-13 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 153 1.6e-13 2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 149 2.9e-13 2
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 149 2.9e-13 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 4.2e-13 2
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 154 4.2e-13 2
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 154 4.2e-13 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 147 4.9e-13 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 153 1.1e-12 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 155 1.6e-12 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 134 2.7e-12 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 147 3.3e-12 2
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 147 3.3e-12 2
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 165 3.5e-12 2
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 156 4.8e-12 2
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 156 4.8e-12 2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 166 5.5e-12 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 162 7.1e-12 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 158 7.2e-12 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 144 7.2e-12 2
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 160 8.8e-12 2
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho... 160 2.1e-11 2
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"... 160 2.1e-11 2
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho... 160 2.1e-11 2
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog... 160 2.1e-11 2
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr... 160 2.1e-11 2
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 151 3.2e-11 2
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 151 3.8e-11 2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 151 4.2e-11 2
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 159 5.0e-11 2
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 150 5.1e-11 2
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 151 5.1e-11 2
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 149 7.1e-11 3
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 156 7.2e-11 1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 151 8.1e-11 2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 151 8.2e-11 2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 151 8.2e-11 2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 151 8.2e-11 2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 151 8.3e-11 2
FB|FBgn0003742 - symbol:tra2 "transformer 2" species:7227... 145 8.5e-11 2
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 174 8.9e-11 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 9.2e-11 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 9.2e-11 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 155 9.2e-11 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 170 1.3e-10 1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 149 1.4e-10 2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 149 1.4e-10 2
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 155 2.2e-10 2
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 151 2.6e-10 1
UNIPROTKB|B7ZMD9 - symbol:RBMY1D "RNA-binding motif prote... 141 3.3e-10 2
UNIPROTKB|J3KPK3 - symbol:RBMY1E "RNA-binding motif prote... 141 3.3e-10 2
WARNING: Descriptions of 672 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 930 (332.4 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
Identities = 181/262 (69%), Positives = 200/262 (76%)
Query: 1 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKP
Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60
Query: 61 PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXX 120
PPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIH
Sbjct: 61 PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120
Query: 121 XXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+G
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXX 240
YAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPR
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGG-- 238
Query: 241 XNQRYSGREQEPSRGPSRSAEP 262
+ G EQ+P S+S EP
Sbjct: 239 -GEEIVG-EQQPQGRTSQSEEP 258
Score = 120 (47.3 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
Identities = 31/81 (38%), Positives = 42/81 (51%)
Query: 399 HERDRHG--ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDND------RY 450
H+RDR ERDY+ + E + G + E+ RG + R Y DD D RY
Sbjct: 343 HDRDRSRKKERDYEGGEYEHEGGGRSRERDAEY-RGEPEETR-GYYEDDQGDTDRYSHRY 400
Query: 451 DQMEEDDYRYDRATSESRDKE 471
D+MEEDD+RY+R S+ E
Sbjct: 401 DKMEEDDFRYEREYKRSKRSE 421
Score = 92 (37.4 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 400 ERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY-HDDDNDRYDQMEED- 456
ER+R E ++ P ++ DR D H + +G D DR ++ D DR D+ D
Sbjct: 274 ERERSRELSHEQPRERSRDRPREDKHHR-DRDQGGRDRDRDSRRDRDRTRDRGDRDRRDR 332
Query: 457 DYRYDRATSESRDKERTRDLDREY 480
D DR TS D++R+R +R+Y
Sbjct: 333 DRGRDR-TSRDHDRDRSRKKERDY 355
Score = 83 (34.3 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 28/84 (33%), Positives = 36/84 (42%)
Query: 398 KHERDR-HGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
KH RDR G RD D + D D + R G DR ++ HD D R + E D
Sbjct: 298 KHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRG-RDRTSRDHDRDRSR--KKERD 354
Query: 457 DYRYDRATSESRDKERTRDLDREY 480
Y+ E R+R+ D EY
Sbjct: 355 ---YEGGEYEHEGGGRSRERDAEY 375
Score = 40 (19.1 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 449 RYDQMEEDDY-RYDRATS--ESRDKERTRDLDRE 479
R Q EE R +R S + +++ER+R+L E
Sbjct: 251 RTSQSEEPSRPREEREKSREKGKERERSRELSHE 284
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 526 (190.2 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 111/222 (50%), Positives = 135/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKP-----PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ + P P EK P G+A F+ HF +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V +K+T KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N ++SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRD-DTSRYDDR 222
Score = 74 (31.1 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 397 SKHERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDD-NDRYDQME 454
S +RDR R+ D++ +RG + E R H+R D+ + E
Sbjct: 226 SDRDRDRGERRERSRERDRDKERGERRRSRSRERRRHTRSHERERAAAGDEAGGSSRRRE 285
Query: 455 EDDYRYDRATSESRDKERTRDLDRE 479
+ R ESR++ R RD DR+
Sbjct: 286 RERERGGAGAGESRERSRDRDRDRD 310
Score = 68 (29.0 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 400 ERDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHD 444
ERDR +R + D+E DR D + +H R GD DR + D
Sbjct: 383 ERDRDRKRSHRDKDRERDRDRRRDRDRDRDHKRDRGDRDRGERRED 428
Score = 65 (27.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYE--HHRGYGDHD 437
+ +RDR +RD D D + DRG D E E H GDH+
Sbjct: 398 ERDRDRRRDRDRD-RDHKRDRGDRDRGERREDRHITSSGDHE 438
Score = 64 (27.6 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
DD RYD R DR E R++ R RD D+E
Sbjct: 214 DDTSRYDDRPIGSDR-DRDRGERRERSRERDRDKE 247
Score = 62 (26.9 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 417 DRGWYDHHENYEHHRGY-GDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRD 475
DRG D E RG G + + D D DR + + D R R RD++R RD
Sbjct: 350 DRGIEDPLGG-EPGRGEEGGPEGEERGRDRDKDR--ERDRDRKRSHRDKDRERDRDRRRD 406
Query: 476 LDRE 479
DR+
Sbjct: 407 RDRD 410
Score = 61 (26.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 24/75 (32%), Positives = 29/75 (38%)
Query: 405 GERDY-DPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRA 463
G+R DP E RG E E R D DR + D DR + D DR
Sbjct: 349 GDRGIEDPLGGEPGRGEEGGPEGEERGRDR-DKDR-----ERDRDRKRSHRDKDRERDRD 402
Query: 464 TSESRDKERTRDLDR 478
RD++R DR
Sbjct: 403 RRRDRDRDRDHKRDR 417
Score = 52 (23.4 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 21/75 (28%), Positives = 28/75 (37%)
Query: 400 ERDRHGE-RDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQMEEDD 457
ER RH + + D+ G E RG G + + D D DR D
Sbjct: 258 ERRRHTRSHERERAAAGDEAGGSSRRRERERERGGAGAGESRERSRDRDRDR------DR 311
Query: 458 YRYDRATSESRDKER 472
R R+ RD+ER
Sbjct: 312 KRRSRSRDRKRDRER 326
Score = 40 (19.1 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 461 DRATSESRDKERTRDLDREY 480
+R +D+ER RD R +
Sbjct: 373 ERGRDRDKDRERDRDRKRSH 392
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 521 (188.5 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 111/225 (49%), Positives = 135/225 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 261
RTV WRPR N R+SGR+ + SR R +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRD 225
Score = 77 (32.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 406 ERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 464
E +P ++ DR D ++ + R D DR + D + D+ D+ + D R DR
Sbjct: 345 ELKQEPEEKNRDRDRERDREKDRDKDRDR-DRDRRRSHRDRERDK-DRERDRDRRRDRDR 402
Query: 465 SESRDKERTRDLDR 478
RD++ R+ DR
Sbjct: 403 DRDRDRDHKRERDR 416
Score = 75 (31.5 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ R+R ER+ + + R E E R + R ++ D D D+ + ++D
Sbjct: 234 ERSRERDKERERRRSRSRERRRRSRSREKEERKRSR-ERSR-DKDKDKDKDKDKEKDKDK 291
Query: 458 YRYDRATSESRDKERTRDLDRE 479
R + S SR+++R RD DRE
Sbjct: 292 DRDRKRRSRSRERKRERDRDRE 313
Score = 68 (29.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 17/82 (20%), Positives = 33/82 (40%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ + R+ ERD D + D R + R +R + + + + E
Sbjct: 213 RDDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERS 272
Query: 458 YRYDRATSESRDKERTRDLDRE 479
D+ + +DKE+ +D DR+
Sbjct: 273 RDKDKDKDKDKDKEKDKDKDRD 294
Score = 67 (28.6 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 400 ERDRHGERDYDPT-DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQMEE-- 455
ERD+ ERD D D++ DR D +++ R GD + DN +Q EE
Sbjct: 385 ERDKDRERDRDRRRDRDRDR---DRDRDHKRERDRGDRGEKREERVPDNGMVMEQAEETS 441
Query: 456 DDYRYDRATSESRD 469
D D+ + +S D
Sbjct: 442 QDMYLDQESMQSGD 455
Score = 66 (28.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 430 HRGYGDHDRYNQYHDD---DNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
H G D RY++ D + DR ++ E D +R S SR++ R R RE
Sbjct: 210 HSGRDDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRERRR-RSRSRE 261
Score = 63 (27.2 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDY 458
+RD+ +RD D DR E R D DR ++ H + DR D+ E+ +
Sbjct: 366 DRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRERDRGDRGEKREE 425
Query: 459 RY-DRATSESRDKERTRD--LDRE 479
R D + +E ++D LD+E
Sbjct: 426 RVPDNGMVMEQAEETSQDMYLDQE 449
Score = 58 (25.5 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 435 DHDRYNQYHDDDNDRYDQMEEDDYR-YDRATSESRDKERTRDLDRE 479
+ DR D D DR D+ +R +R RD++R RD DR+
Sbjct: 360 ERDREKD-RDKDRDR-DRDRRRSHRDRERDKDRERDRDRRRDRDRD 403
Score = 58 (25.5 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 460
R+R ERD D ++++DR + E+ + + D + D + + EE +
Sbjct: 302 RERKRERDRD-REKKEDRVEGEVPESVDVPQ---DDAQTGDLGIDGIELKQEPEEKNRDR 357
Query: 461 DRATSESRDKERTRDLDRE 479
DR +D+++ RD DR+
Sbjct: 358 DRERDREKDRDKDRDRDRD 376
Score = 48 (22.0 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
K ER R ER D D++ D+ D ++ + R D R ++ + +R E+ +
Sbjct: 262 KEERKRSRERSRDK-DKDKDKD-KDKEKDKDKDR---DRKRRSRSRERKRERDRDREKKE 316
Query: 458 YRYDRATSES----RDKERTRDL 476
R + ES +D +T DL
Sbjct: 317 DRVEGEVPESVDVPQDDAQTGDL 339
Score = 37 (18.1 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 459 RYDRATSESRDKERTRDLDRE 479
R+ SR ER RD +RE
Sbjct: 209 RHSGRDDTSRYDERDRDRERE 229
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 509 (184.2 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 112/228 (49%), Positives = 135/228 (59%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213
EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 214 ERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 261
ERGRTV WRPR N R+SGR+ + SR R E
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRE 228
Score = 88 (36.0 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
ERDR +RD + +++ D+ D + + R + D DR D D DR D R
Sbjct: 351 ERDRERDRDREKGEKDRDK---DRDRDRDRRRSHRDRDREK---DRDRDR-------DRR 397
Query: 460 YDRATSESRDKERTRDLDR 478
DR RDK+ R+ DR
Sbjct: 398 RDRDRDRERDKDHKRERDR 416
Score = 78 (32.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 29/79 (36%), Positives = 35/79 (44%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 460
R+R ERD D E DR D + + R + D DR D D DR D R
Sbjct: 350 RERDRERDRDREKGEKDRD-KDRDRDRDRRRSHRDRDREK---DRDRDR-------DRRR 398
Query: 461 DRATSESRDKERTRDLDRE 479
DR RD+ER +D RE
Sbjct: 399 DR----DRDRERDKDHKRE 413
Score = 74 (31.1 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH----DDDNDRYDQMEE 455
ERDR ERD +E ++ + + R R + + D+ + ++
Sbjct: 224 ERDRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREKSKDKDKEKDK 283
Query: 456 DDYRYDRAT-SESRDKERTRDLDRE 479
D+ DR S SR+++R RD DRE
Sbjct: 284 DNKDRDRKRRSRSRERKRERDRDRE 308
Score = 72 (30.4 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 414 QEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERT 473
QE + + + R G+ DR ++ D D DR + D DR RD+ R
Sbjct: 343 QEPEEKSRERDRERDRDREKGEKDR-DKDRDRDRDRRRSHRDRDREKDR--DRDRDRRRD 399
Query: 474 RDLDRE 479
RD DRE
Sbjct: 400 RDRDRE 405
Score = 70 (29.7 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 406 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
E +P ++ +R D + + +G D D+ D D DR D+ R DR
Sbjct: 340 ELKQEPEEKSRER---DRERDRDREKGEKDRDK-----DRDRDR-DRRRSHRDR-DREKD 389
Query: 466 ESRDKERTRDLDRE 479
RD++R RD DR+
Sbjct: 390 RDRDRDRRRDRDRD 403
Score = 65 (27.9 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 397 SKHERDRHGERDYDPTDQED-DRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQME 454
S +RDR +RD D + D DR + ++++ R GD + DN +Q E
Sbjct: 380 SHRDRDREKDRDRDRDRRRDRDRD-RERDKDHKRERDRGDRSEKREERVPDNGMVMEQAE 438
Query: 455 E--DDYRYDRATSESRD 469
E D D+ + +S D
Sbjct: 439 ETSQDMYLDQESMQSGD 455
Score = 65 (27.9 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
+RDR R + D+E DR D + R D +R ++ H + DR D+ E+ + R
Sbjct: 372 DRDRDRRRSHRDRDREKDRD-RDRDRRRDRDR---DRER-DKDHKRERDRGDRSEKREER 426
Query: 460 Y-DRATSESRDKERTRD--LDRE 479
D + +E ++D LD+E
Sbjct: 427 VPDNGMVMEQAEETSQDMYLDQE 449
Score = 59 (25.8 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKE---RTRDLDRE 479
DD RYD+ + + R R S R+KE R R RE
Sbjct: 217 DDTSRYDERDRERERDRRERSREREKEPRERRRSRSRE 254
Score = 50 (22.7 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD-HDRYN-QYHDDDNDRYDQMEEDDY 458
+D+ E+D D D++ R E R +R + + D+ D + D
Sbjct: 275 KDKDKEKDKDNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDL 334
Query: 459 RYDRATSESRDKERTRDLDRE 479
D + +E++R+ DRE
Sbjct: 335 GIDGIELKQEPEEKSRERDRE 355
Score = 41 (19.5 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKERTRD 475
D N R+ +D RYD RD+ER RD
Sbjct: 208 DVNIRHSG-RDDTSRYDE-----RDRERERD 232
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 529 (191.3 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 65 (27.9 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 22/77 (28%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D D R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDR 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 59 (25.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D++
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKD 272
Score = 57 (25.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 430 HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
H G D RY++ + + D R R S RDKER R R
Sbjct: 210 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSR 258
Score = 57 (25.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 454
+ ER+R +RD D D+E RG + RG G + N D D Y + E
Sbjct: 371 RSERERRRDRDRD-RDREHKRGERGSERGRDEARGGGGSGQDNGLEGLGSDGRDMYMEAE 429
Query: 455 EDD 457
D
Sbjct: 430 GGD 432
Score = 43 (20.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 444 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 480
D ++ + + R R+ E R ++R RD DRE+
Sbjct: 353 DGPEEKGRDRDRERRRSHRSERERR-RDRDRDRDREH 388
Score = 43 (20.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 438
RDR ER + + R D + EH RG +R
Sbjct: 360 RDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSER 397
Score = 41 (19.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 448 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
DR D+ +R +R RD++R R+ R
Sbjct: 361 DR-DRERRRSHRSERERRRDRDRDRDREHKR 390
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 529 (191.3 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 48 (22.0 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ +RDR ERD+ ++ +RG E G G + +D D Y + E D
Sbjct: 380 RRDRDRDRERDHKRGERGGERG---RDEARGGGGGGGQDNGLEGLGNDSRDMYMEAEGGD 436
Score = 46 (21.3 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 19/68 (27%), Positives = 26/68 (38%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 464
GE D + +++G E HR + R D D DR E D R +R
Sbjct: 348 GELGPDGPEGPEEKGRDRDRERRRSHRSERERRR-----DRDRDR----ERDHKRGERGG 398
Query: 465 SESRDKER 472
RD+ R
Sbjct: 399 ERGRDEAR 406
Score = 45 (20.9 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 448 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
DR D+ +R +R RD++R RD R
Sbjct: 364 DR-DRERRRSHRSERERRRDRDRDRERDHKR 393
Score = 42 (19.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 461 DRATSESRDKERTRDLDRE 479
+R S ++ER RD DR+
Sbjct: 368 ERRRSHRSERERRRDRDRD 386
Score = 41 (19.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 462 RATSESRDKERTRDLDRE 479
R+ R++ R RD DRE
Sbjct: 371 RSHRSERERRRDRDRDRE 388
Score = 38 (18.4 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRG 432
RDR ER + + R D +H RG
Sbjct: 363 RDRDRERRRSHRSERERRRDRDRDRERDHKRG 394
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 529 (191.3 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 61 (26.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D + R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 54 (24.1 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 398 KHERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGD-HDR-YNQYHDDDNDRYDQME 454
+ ER+R +RD D D+E RG + RG G D +D D Y + E
Sbjct: 359 RSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESE 418
Query: 455 EDD 457
D
Sbjct: 419 GGD 421
Score = 51 (23.0 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 448 DRYDQMEEDDYRYDRATSESRDKERTRDLDREY 480
DR D+ +R +R RD++R RD DRE+
Sbjct: 349 DR-DRERRRSHRSER--ERRRDRDRDRDRDREH 378
Score = 50 (22.7 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 464
GE D D +++G E HR + R D D DR D+ + + R +R +
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRR-----DRDRDR-DR-DREHKRGERGS 385
Query: 465 SESRDKER 472
RD+ R
Sbjct: 386 ERGRDEAR 393
Score = 46 (21.3 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 398 KHERDRHGERDYDP---TDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD---DDN---- 447
+ R+R ++D D + + +R + E G GD ++ D DD
Sbjct: 275 RRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE 334
Query: 448 ---DRYDQMEED--DYRYDRATSESRDKERTRDLDRE 479
D D EE D +R S ++ER RD DR+
Sbjct: 335 LGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371
Score = 41 (19.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 444 DDDNDRY-DQMEEDDYRYDRATSESRDKERTR 474
D D +R E + R DR RD+E R
Sbjct: 349 DRDRERRRSHRSERERRRDRDRDRDRDREHKR 380
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 529 (191.3 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 53 (23.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 454
+ ER+R +RD D D+E RG + RG G + N ++ D Y + E
Sbjct: 362 RSERERRRDRDRD-RDREHKRGERGGERGRDEARGGGGGGQDNGLEGLGNESRDMYMESE 420
Query: 455 EDD 457
D
Sbjct: 421 GGD 423
Score = 44 (20.5 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
D D ++ D R +R S ++ER RD DR+
Sbjct: 341 DGPDGPEEKGRDRDR-ERRRSHRSERERRRDRDRD 374
Score = 43 (20.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 444 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 480
D ++ + + R R+ E R ++R RD DRE+
Sbjct: 344 DGPEEKGRDRDRERRRSHRSERERR-RDRDRDRDREH 379
Score = 42 (19.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRG 432
RDR ER + + R D + EH RG
Sbjct: 351 RDRDRERRRSHRSERERRRDRDRDRDREHKRG 382
Score = 41 (19.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 448 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
DR D+ +R +R RD++R R+ R
Sbjct: 352 DR-DRERRRSHRSERERRRDRDRDRDREHKR 381
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 529 (191.3 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 61 (26.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D + R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 55 (24.4 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 454
+ ER+R +RD D D+E RG + RG G + N +D D Y + E
Sbjct: 362 RSERERRRDRDRD-RDREHKRGERGGDRGRDEARGGGGGGQDNGLEGLGNDGRDMYMESE 420
Query: 455 EDD 457
D
Sbjct: 421 GGD 423
Score = 48 (22.0 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
D D ++ D R DR S ++ER RD DR+
Sbjct: 341 DGPDGPEEKGRDRDR-DRRRSHRSERERRRDRDRD 374
Score = 43 (20.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 438
RDR +R + + R D + EH RG DR
Sbjct: 351 RDRDRDRRRSHRSERERRRDRDRDRDREHKRGERGGDR 388
Score = 40 (19.1 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 448 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
DR D+ +R +R RD++R R+ R
Sbjct: 352 DR-DRDRRRSHRSERERRRDRDRDRDREHKR 381
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 529 (191.3 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 112/222 (50%), Positives = 134/222 (60%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 258
RTV WRPR N R+SGR+ + SR R
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 479
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 404 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 463 ATSESRDKERTRDLDRE 479
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 414 (150.8 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 83/185 (44%), Positives = 119/185 (64%)
Query: 41 GLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVE 100
G+ ++L LF+ R LE+ P +K+K +G++ F+++F E G+ APP K E+ E
Sbjct: 5 GMPQHILILFQARPMLEFYKPIKKKKPKEYSGLSDFLNYFEE-GE---APPKIKVESFKE 60
Query: 101 RRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFES 160
R+ + YDP + +++ DP KTLF+ RLSYE +E K+K+EFES
Sbjct: 61 RKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFES 120
Query: 161 YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVP 220
YG IK V+++ DK KPRGYAFIE+ HT+ M AYK ADG+K++ RR+LVD+ERGRT+
Sbjct: 121 YGKIKTVKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIK 179
Query: 221 NWRPR 225
NW PR
Sbjct: 180 NWIPR 184
Score = 136 (52.9 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 398 KHER-DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY--HD--DDNDRYD 451
KH+R D++ D YD D+ D YD H+ Y+ H Y H+R+++Y HD D DR+D
Sbjct: 310 KHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDRHNRHDKYDRHDRHDKYDRHD 369
Query: 452 QMEEDDYRYDRATSESRDKE 471
+ D YD +T + KE
Sbjct: 370 KHHNSDNPYDNSTKDDIRKE 389
Score = 130 (50.8 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 402 DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRYDQMEEDDY 458
DRHG D +D D+ D YD H+ Y+ H Y HDRY++ HD D ++R+D+ + D
Sbjct: 303 DRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRHD- 360
Query: 459 RYDRATSESRDKERTRD 475
R+D+ + DK D
Sbjct: 361 RHDKY--DRHDKHHNSD 375
Score = 111 (44.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN-DRYDQMEEDDY 458
+R H R D + + DR +YD H ++ H + +DR ++Y D DR+D+ ++ D
Sbjct: 281 DRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHD- 339
Query: 459 RYDRATSESRDKERTRD-LDR 478
RYDR + D+ D DR
Sbjct: 340 RYDR--HDKYDRHNRHDKYDR 358
Score = 84 (34.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 398 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDD---NDRYDQ 452
KH+R DRH + YD ++ D +D H+ Y+ H + + D Y+ DD + +
Sbjct: 337 KHDRYDRHDK--YDRHNRHDKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEIND 394
Query: 453 MEEDDYRYDRATSE 466
++ +DY +R +E
Sbjct: 395 IQHNDYENNREHNE 408
Score = 81 (33.6 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 29/90 (32%), Positives = 40/90 (44%)
Query: 398 KHER-DRH---GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHD--DDNDRY 450
KH R D H +RD + + HH++ R D DR Y H D +DR+
Sbjct: 255 KHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRH 314
Query: 451 DQMEEDDYRYDRATSESR-DKERTRD-LDR 478
D+ + +D +YDR R DK D DR
Sbjct: 315 DKYDRND-KYDRHDKYDRHDKYDKHDRYDR 343
Score = 63 (27.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 404 HGERDYDPTDQEDD------RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ ER+ D D EDD R Y HH + +H RG R+ + +DR+
Sbjct: 234 YNERNND--DDEDDGISSTMRD-YKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR-- 288
Query: 458 YRYDRATSESRDK 470
R DR+ + RD+
Sbjct: 289 -RRDRSRDD-RDR 299
Score = 49 (22.3 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 439 YNQYH-DDDNDRYDQMEEDDYRYDRATSESRDKERTR 474
YN+ + DDD D DY++ R+ R +R R
Sbjct: 234 YNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR 270
Score = 44 (20.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 398 KHERDRHGERDYDPTDQED--------DRGWYDHHENYEHHRGY 433
+H++ + + YD + ++D D D+ N EH+ G+
Sbjct: 367 RHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNEGF 410
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 414 (150.8 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 83/185 (44%), Positives = 119/185 (64%)
Query: 41 GLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVE 100
G+ ++L LF+ R LE+ P +K+K +G++ F+++F E G+ APP K E+ E
Sbjct: 5 GMPQHILILFQARPMLEFYKPIKKKKPKEYSGLSDFLNYFEE-GE---APPKIKVESFKE 60
Query: 101 RRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFES 160
R+ + YDP + +++ DP KTLF+ RLSYE +E K+K+EFES
Sbjct: 61 RKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFES 120
Query: 161 YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVP 220
YG IK V+++ DK KPRGYAFIE+ HT+ M AYK ADG+K++ RR+LVD+ERGRT+
Sbjct: 121 YGKIKTVKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIK 179
Query: 221 NWRPR 225
NW PR
Sbjct: 180 NWIPR 184
Score = 136 (52.9 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 398 KHER-DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY--HD--DDNDRYD 451
KH+R D++ D YD D+ D YD H+ Y+ H Y H+R+++Y HD D DR+D
Sbjct: 310 KHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDRHNRHDKYDRHDRHDKYDRHD 369
Query: 452 QMEEDDYRYDRATSESRDKE 471
+ D YD +T + KE
Sbjct: 370 KHHNSDNPYDNSTKDDIRKE 389
Score = 130 (50.8 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 402 DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRYDQMEEDDY 458
DRHG D +D D+ D YD H+ Y+ H Y HDRY++ HD D ++R+D+ + D
Sbjct: 303 DRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRHD- 360
Query: 459 RYDRATSESRDKERTRD 475
R+D+ + DK D
Sbjct: 361 RHDKY--DRHDKHHNSD 375
Score = 111 (44.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN-DRYDQMEEDDY 458
+R H R D + + DR +YD H ++ H + +DR ++Y D DR+D+ ++ D
Sbjct: 281 DRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHD- 339
Query: 459 RYDRATSESRDKERTRD-LDR 478
RYDR + D+ D DR
Sbjct: 340 RYDR--HDKYDRHNRHDKYDR 358
Score = 84 (34.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 398 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDD---NDRYDQ 452
KH+R DRH + YD ++ D +D H+ Y+ H + + D Y+ DD + +
Sbjct: 337 KHDRYDRHDK--YDRHNRHDKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEIND 394
Query: 453 MEEDDYRYDRATSE 466
++ +DY +R +E
Sbjct: 395 IQHNDYENNREHNE 408
Score = 81 (33.6 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 29/90 (32%), Positives = 40/90 (44%)
Query: 398 KHER-DRH---GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHD--DDNDRY 450
KH R D H +RD + + HH++ R D DR Y H D +DR+
Sbjct: 255 KHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRH 314
Query: 451 DQMEEDDYRYDRATSESR-DKERTRD-LDR 478
D+ + +D +YDR R DK D DR
Sbjct: 315 DKYDRND-KYDRHDKYDRHDKYDKHDRYDR 343
Score = 63 (27.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 404 HGERDYDPTDQEDD------RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ ER+ D D EDD R Y HH + +H RG R+ + +DR+
Sbjct: 234 YNERNND--DDEDDGISSTMRD-YKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR-- 288
Query: 458 YRYDRATSESRDK 470
R DR+ + RD+
Sbjct: 289 -RRDRSRDD-RDR 299
Score = 49 (22.3 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 439 YNQYH-DDDNDRYDQMEEDDYRYDRATSESRDKERTR 474
YN+ + DDD D DY++ R+ R +R R
Sbjct: 234 YNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR 270
Score = 44 (20.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 398 KHERDRHGERDYDPTDQED--------DRGWYDHHENYEHHRGY 433
+H++ + + YD + ++D D D+ N EH+ G+
Sbjct: 367 RHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNEGF 410
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 445 (161.7 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 92/212 (43%), Positives = 125/212 (58%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L NLL LF R P+ + PP P ++K G+A+F++ F +P D VE +
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQE 64
Query: 98 PVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
+ERR R +DP N + DP++TLF+AR++Y+T+ESK++RE
Sbjct: 65 RLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217
FE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 218 TVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 249
TV W PR N ++SGRE
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSGRE 213
Score = 75 (31.5 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 402 DRHGERDYDPTDQEDDRG-------WYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQM 453
+R R + D+E DRG + E R G +RY+++ D DR D+
Sbjct: 254 ERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEF--DRRDRRDRE 311
Query: 454 EEDDYRYDRATSESRDKERTRDLDRE 479
E D +R + R K R R+ RE
Sbjct: 312 RERDRDREREKKKKRSKSRERESSRE 337
Score = 51 (23.0 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 27/95 (28%), Positives = 39/95 (41%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
S+ RDR ERD G R G +RY+++ D DR D+ E
Sbjct: 260 SRERRDR--ERDRG-RGAVASNGRSRSRSRERRKRRAGSRERYDEF--DRRDRRDRERER 314
Query: 457 DYRYDRAT----SESRDKERTRDL--------DRE 479
D +R S+SR++E +R+ DRE
Sbjct: 315 DRDREREKKKKRSKSRERESSRERRERKRERRDRE 349
Score = 46 (21.3 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 397 SKHERDRHG-ERDYDPTDQEDD-RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 454
++ ER+R+ ER+ + D+E RG + + RG+G R ++ + + D+
Sbjct: 215 NERERERYRLERERE--DREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGR 272
Query: 455 EDDYRYDRATSESRDKERTRDLDRE 479
R+ S SR++ + R RE
Sbjct: 273 GAVASNGRSRSRSRERRKRRAGSRE 297
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 436 (158.5 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 89/223 (39%), Positives = 122/223 (54%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPV 99
L NL +F PR P + PPP PP TG+ ++S F +P +P +E E
Sbjct: 4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE--- 60
Query: 100 ERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
E+R + +DP+++ +GDPYKT+FV+R+SY+TT+ K++ EF
Sbjct: 61 EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFG 120
Query: 160 SYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 218
+GPIK + LV D K GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR
Sbjct: 121 QFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRV 180
Query: 219 VPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 261
+ NW+PR NQ +SGRE SR + E
Sbjct: 181 IKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSESREKEKERE 223
Score = 83 (34.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 400 ERDR--HGER-DYDPTDQEDDRGWYDHH-ENYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 455
+RDR G+R D D+E RG DH E R DR D DR D+
Sbjct: 269 DRDRGDRGDRSDRSDRDRERGRGDRDHRGSGGERERERDQRDRGGDRGGDRGDRSDRGRS 328
Query: 456 D-DYRYDRATSESRDKERTRDLDR 478
D R DR+ D+ER RD DR
Sbjct: 329 DRGDRGDRSDRGRDDRERGRD-DR 351
Score = 79 (32.9 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 32/90 (35%), Positives = 39/90 (43%)
Query: 398 KHERDRHGER-DYDPTDQE---DDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 453
+ +R G+R D D+E DDRG + RG D DR DD DR D+
Sbjct: 327 RSDRGDRGDRSDRGRDDRERGRDDRG----DRGRDDRRGGSDRDRDRGSRDDRGDRDDR- 381
Query: 454 EEDDYRYDRATSESRDK---ERTRDLDREY 480
D R DR RD ER RD R+Y
Sbjct: 382 -SDRGRDDRRGGSDRDHRIDERRRD-QRDY 409
Score = 74 (31.1 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 28/86 (32%), Positives = 39/86 (45%)
Query: 398 KHERDRHGERDYDPTDQED----DRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQ 452
+ +RDR G+R D D+ D DRG D + R G DR ++ DD D+
Sbjct: 306 RDQRDRGGDRGGDRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDDRGDRGRDDRRGGSDR 365
Query: 453 MEEDDYRYDRATSESRDKERTRDLDR 478
+ R DR + R +R RD DR
Sbjct: 366 DRDRGSRDDRGDRDDRS-DRGRD-DR 389
Score = 71 (30.1 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 28/86 (32%), Positives = 38/86 (44%)
Query: 400 ERDRHG-----ERDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQM 453
+RD G ER+ D D+ DRG D + + R GD + DD +R
Sbjct: 292 DRDHRGSGGERERERDQRDRGGDRGG-DRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDD 350
Query: 454 EEDDYRYDRATSESRDKER-TRDLDR 478
D R DR RD++R +RD DR
Sbjct: 351 RGDRGRDDRRGGSDRDRDRGSRD-DR 375
Score = 60 (26.2 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 401 RDRHGERDYDPTDQ--EDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDY 458
RD G+RD D +D+ +D RG D + R D Y D D + + +
Sbjct: 372 RDDRGDRD-DRSDRGRDDRRGGSDRDHRIDERRR--DQRDYGSISDAHFDHFQYQPQQHH 428
Query: 459 RYDRATSESRDKERTRDLDREY 480
+ + ++ ++R+Y
Sbjct: 429 HHQQNHQSHHNQPHPERVNRDY 450
Score = 48 (22.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 462 RATSESRDKERTRDLDRE 479
R SESR+KE+ R+ ++E
Sbjct: 210 REMSESREKEKEREKEKE 227
>ASPGD|ASPL0000006999 [details] [associations]
symbol:AN6903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
GO:GO:0030529 EMBL:AACD01000113 eggNOG:COG0724 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OrthoDB:EOG4HMNKR
RefSeq:XP_664507.1 ProteinModelPortal:Q5AXS7 STRING:Q5AXS7
EnsemblFungi:CADANIAT00007705 GeneID:2870614 KEGG:ani:AN6903.2
HOGENOM:HOG000177264 OMA:GRGYTKA Uniprot:Q5AXS7
Length = 373
Score = 376 (137.4 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 87/195 (44%), Positives = 113/195 (57%)
Query: 46 LLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVER 101
LL LF+PR PL + P P+ K L+G+AQF+ + + P AET ++R
Sbjct: 9 LLALFQPRPPLRWVTPIDRAPDDIKKSKLSGVAQFLPEVKKTAEETEYNP---AETWLQR 65
Query: 102 RARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESY 161
+ R YDP++DP GDP+KTLFV+RLSYE TE ++REF +
Sbjct: 66 KLRQKAEKKEQLHKHLTEGLAAYDPNSDPQARGDPFKTLFVSRLSYEATEQDLEREFGRF 125
Query: 162 GPIKRVRLVTD----KETNKP-RGYAFIEYMHTRDMK------AAYKQADGRKLDGRRVL 210
GPI+R+R+V D K KP RGYAFI Y +DMK AAYK+ DG ++ RRVL
Sbjct: 126 GPIERIRIVKDTVTPKGAKKPHRGYAFIVYEREKDMKDLIHKLAAYKETDGIRIKDRRVL 185
Query: 211 VDVERGRTVPNWRPR 225
VDVERGRTV W+PR
Sbjct: 186 VDVERGRTVKGWKPR 200
Score = 79 (32.9 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 25/64 (39%), Positives = 31/64 (48%)
Query: 417 DRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRD 475
DRG + E YGD DR ++ D D DR D+ + D YRY RD+ER R
Sbjct: 296 DRGGTGSNREPIRPRDSYGDRDRRDR--DRDGDRRDR-DRDSYRY-----RDRDRERERY 347
Query: 476 LDRE 479
RE
Sbjct: 348 GSRE 351
Score = 78 (32.5 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 460
RD +G+RD D++ DR D ++Y + + +RY D RY E+D Y
Sbjct: 310 RDSYGDRDRRDRDRDGDRRDRDR-DSYRYRDRDRERERYGSREDQGRKRYH--EDDSYDD 366
Query: 461 DRA 463
RA
Sbjct: 367 SRA 369
Score = 67 (28.6 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQ--YHDDDNDRYD 451
+RDR +RD D ++ DR Y + + YG + + YH+DD+ YD
Sbjct: 315 DRDRR-DRDRDGDRRDRDRDSYRYRDRDRERERYGSREDQGRKRYHEDDS--YD 365
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 88/188 (46%), Positives = 117/188 (62%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L A LL LF PR PL Y PP PEKR P ++G+A+++ +A+ D Y P E E
Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP-TESLE- 61
Query: 98 PVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
E+R R+ +DP +D +V GDPYKT+F++RLSY+T ES I+RE
Sbjct: 62 --EKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIERE 119
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217
F YGPI+R+R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGR
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGR 179
Query: 218 TVPNWRPR 225
TV W PR
Sbjct: 180 TVKGWLPR 187
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 88/191 (46%), Positives = 117/191 (61%)
Query: 42 LTANLLKLFEPRAPLEYKPP------PEKRKCPPLTGMAQFVSHFAEPGD-PLYAPPVEK 94
L NLL LFE R P++Y PP + K P+TG+AQ++ F +P D P P V K
Sbjct: 5 LPPNLLALFEARPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAKIPVVTK 64
Query: 95 AETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKI 154
AE E+R + ++P +P S DPY+TLFV R++YET+ESK+
Sbjct: 65 AEAKEEKRRQ----KDELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKL 120
Query: 155 KREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214
+REFE+YG IK++ +V D E KPRGYAFIEY +M AYK+ADG K+DG+R++VD E
Sbjct: 121 RREFEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYE 179
Query: 215 RGRTVPNWRPR 225
RGRT W PR
Sbjct: 180 RGRTQKTWLPR 190
>RGD|1307120 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1307120 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR022023 Pfam:PF12220 IPI:IPI00564444
ProteinModelPortal:D4ADS7 Ensembl:ENSRNOT00000051455
UCSC:RGD:1307120 ArrayExpress:D4ADS7 Uniprot:D4ADS7
Length = 187
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 79/160 (49%), Positives = 95/160 (59%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM Y
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHCEY 161
>UNIPROTKB|J9NZ89 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:AAEX03000805 ProteinModelPortal:J9NZ89
Ensembl:ENSCAFT00000045168 Uniprot:J9NZ89
Length = 166
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 79/163 (48%), Positives = 97/163 (59%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM + + A
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSTTQLA 164
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 234 (87.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 55/129 (42%), Positives = 70/129 (54%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
PN V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAFIEY
Sbjct: 41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
R + AY+ ADG +D + VD E RT+ W PR R+ G
Sbjct: 101 EERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQL---RFGG 157
Query: 248 REQEPSRGP 256
R++ P R P
Sbjct: 158 RDR-PFRKP 165
Score = 79 (32.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 455
K+E R G+R+ + DR W +H RG H DR + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQDRARVWPENDWER-----E 226
Query: 456 DDYRYDRA-TSESRDKER 472
++R +RA T + RD+ +
Sbjct: 227 REFRDERAKTRDKRDRSK 244
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 234 (87.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 55/129 (42%), Positives = 70/129 (54%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
PN V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAFIEY
Sbjct: 41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
R + AY+ ADG +D + VD E RT+ W PR R+ G
Sbjct: 101 EERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQL---RFGG 157
Query: 248 REQEPSRGP 256
R++ P R P
Sbjct: 158 RDR-PFRKP 165
Score = 79 (32.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 455
K+E R G+R+ + DR W +H RG H DR + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQDRARVWPENDWER-----E 226
Query: 456 DDYRYDRA-TSESRDKER 472
++R +RA T + RD+ +
Sbjct: 227 REFRDERAKTRDKRDRSK 244
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 236 (88.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 55/129 (42%), Positives = 70/129 (54%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
PN V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAFIEY
Sbjct: 41 PNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
R + AY+ ADG +D + VD E RT+ W PR R+ G
Sbjct: 101 EERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQL---RFGG 157
Query: 248 REQEPSRGP 256
R++ P R P
Sbjct: 158 RDR-PFRKP 165
Score = 71 (30.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 455
K+E R G+R+ + DR W +H RG H +R + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQERARVWPENDWER-----E 226
Query: 456 DDYRYDRATS-ESRDKER 472
++R +R S + RD+ +
Sbjct: 227 REFREERVKSRDKRDRSK 244
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 239 (89.2 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 55/133 (41%), Positives = 71/133 (53%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAF
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAF 96
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQ 243
IEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 97 IEYKEERSLIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQL--- 153
Query: 244 RYSGREQEPSRGP 256
R+ GR++ P R P
Sbjct: 154 RFGGRDR-PFRKP 165
Score = 64 (27.6 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY----DQM 453
K+++ R G+R+ + +R W + +H D +R ++ + + R D
Sbjct: 172 KNDQYREGKREKRERSRSRERHWDSRTRDRDH-----DRNREKRWQEREPSRVWLESDWE 226
Query: 454 EEDDYRYDRATS-ESRDKER 472
E D+R DRA E RD+ +
Sbjct: 227 RERDFRDDRAKGREKRDRSK 246
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 238 (88.8 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 55/133 (41%), Positives = 71/133 (53%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAF
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 96
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQ 243
IEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 97 IEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQL--- 153
Query: 244 RYSGREQEPSRGP 256
R+ GR++ P R P
Sbjct: 154 RFGGRDR-PFRKP 165
Score = 60 (26.2 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 398 KHERDRHGERDYDPTDQEDDRGW----YDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 453
K+++ R G+R+ + +R W DHH+ R + + + + + D +R
Sbjct: 172 KNDQFREGKRERRERSRSRERHWDSRMRDHHDRGREKR-WQEREPARAWPEGDWER---- 226
Query: 454 EEDDYRYDRATS-ESRDKER 472
E D+R DR E RD+ +
Sbjct: 227 -ERDFRDDRVKGREKRDRSK 245
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 239 (89.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 55/133 (41%), Positives = 71/133 (53%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAF
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 96
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQ 243
IEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 97 IEYKEERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQL--- 153
Query: 244 RYSGREQEPSRGP 256
R+ GR++ P R P
Sbjct: 154 RFGGRDR-PFRQP 165
Score = 57 (25.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN--DRYDQMEE 455
K+++ R G+R+ + +R W + H RG D+ Q + D E
Sbjct: 172 KNDQFREGKRERRERSRSRERHWDSRMRDRGHDRG---RDKRWQEREPARVWPEGDWERE 228
Query: 456 DDYRYDRATS-ESRDKER 472
D+R DR E RD+ +
Sbjct: 229 RDFRDDRVKGREKRDRSK 246
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 245 (91.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 53/135 (39%), Positives = 69/135 (51%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
YDP D GDPY TLFV RLS+ TTE ++ YG IK +RLV T RGY F
Sbjct: 50 YDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGF 109
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQ 243
+EY ++M AY+ A +DGR ++VD R + +P W PR
Sbjct: 110 VEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQL--- 166
Query: 244 RYSGREQEPSRGPSR 258
R+ GR++ P R P R
Sbjct: 167 RFGGRDR-PFRAPLR 180
Score = 48 (22.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 412 TDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDR---ATSESR 468
+D+E++ +Y + E + + YH + + DR + ESR
Sbjct: 217 SDREEE--YYREKSSVEREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDREECSREESR 274
Query: 469 D--KERTRDLDREY 480
KER R ++ Y
Sbjct: 275 SDRKERARGMEDRY 288
Score = 43 (20.2 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 406 ERDYDPTDQEDDRGWYDH----HENYEHHRGYGDHDRYNQYHDDDNDRYDQME--EDDYR 459
ER+ + ++ R ++ H H + H R D + ++ + +DR ++ ED Y
Sbjct: 231 EREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDREECSR-EESRSDRKERARGMEDRYG 289
Query: 460 YDRA-TSESRDKERTRDLDR 478
++ S S+ +R+ + DR
Sbjct: 290 DNKGEVSGSKRSKRSEE-DR 308
Score = 39 (18.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYG-DH 436
G + ++++ R + H ++ H R Y DH
Sbjct: 297 GSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDH 329
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 231 (86.4 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 55/129 (42%), Positives = 69/129 (53%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
PN V GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +GYAFIEY
Sbjct: 41 PNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
R + AY+ ADG +D + VD E RT+ W PR R+ G
Sbjct: 101 EERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQL---RFGG 157
Query: 248 REQEPSRGP 256
R++ P R P
Sbjct: 158 RDR-PFRKP 165
Score = 58 (25.5 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----YGDHDRYNQYHDDDNDRYDQM 453
K++ R G+R+ + +R W + +H RG + + + + D+D +R
Sbjct: 172 KNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWER---- 227
Query: 454 EEDDYRYDRATSESRDKER 472
E D+R DR + KER
Sbjct: 228 -ERDFRDDRIKGREK-KER 244
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 239 (89.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 60/144 (41%), Positives = 79/144 (54%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
Y P+ V GDP TLFVARL+ +TTE K++ F +G I+R+RLV D T + YAF
Sbjct: 38 YKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAF 95
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQ 243
IEY R +K A++ A+ LD +LVDVE+ RT+P WRPR
Sbjct: 96 IEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQL--- 152
Query: 244 RYSGREQEPSRGP-----SRSAEP 262
R+ GR++ P R P R AEP
Sbjct: 153 RFGGRDR-PFRKPINLSTRRPAEP 175
Score = 48 (22.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGY 433
R R ER+ D D D R H E+ H Y
Sbjct: 176 RGRETERERDRRDYRDRRHERTHTEDRTHRHTY 208
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 227 (85.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 53/129 (41%), Positives = 71/129 (55%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
PN V+GDP+ TLFVARL+ +TTE K+K F YG I+++RLV D T +GYAFIEY
Sbjct: 46 PNKGVTGDPHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYK 105
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
R + A++ A+ +D V VD E RT+ W PR R+ G
Sbjct: 106 EERALLKAHRDANRLVIDQHEVFVDFELERTLKGWIPRRLGGGFGGKKESGQL---RFGG 162
Query: 248 REQEPSRGP 256
R++ P R P
Sbjct: 163 RDR-PFRKP 170
Score = 55 (24.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 438
K R G RD+ D+E +R E G+GD +R
Sbjct: 188 KRNWSREGTRDWRTRDREHERSREKRGPERERSWGWGDSER 228
Score = 49 (22.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 401 RDRHGERDYDPTDQEDDR--GWYDHHENYEHHRGYG----DHDR 438
RDR ER + E +R GW D + + R G D DR
Sbjct: 202 RDREHERSREKRGPERERSWGWGDSERDSKEERSRGRERKDRDR 245
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 62/191 (32%), Positives = 100/191 (52%)
Query: 48 KLFEPRAPLEYKPPPE----KRKCPP-LTGMAQFVS----HFAEPGDPLYAPPVEKAETP 98
+LF+PR PL YK P + KR+ P +TG+A +S H+ E P
Sbjct: 14 RLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEF------PEGSPNNH 67
Query: 99 VERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSG-DPYKTLFVARLSYETTESKIKRE 157
++R I ++P+ DP++ DPY+T+F+ RL Y+ E ++++
Sbjct: 68 LQRYEDIKLSKIKNAQLLDRRLQN-WNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKY 126
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD---GRKLDGRRVLVDVE 214
F +G I+++R+V DK T K +GYAFI + K A+K+ G ++ R +VD+E
Sbjct: 127 FVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIE 186
Query: 215 RGRTVPNWRPR 225
RGRTV ++PR
Sbjct: 187 RGRTVKYFKPR 197
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 165 (63.1 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 66
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 67 ERIDDSKEAMERANGMELDGRRIRVD 92
Score = 85 (35.0 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R+ S + R+R R Y
Sbjct: 126 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRSPSPYYSRYRSRSRSRSY 175
Score = 51 (23.0 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 449
G R D+ DRG YD +E+Y++ Y++Y R
Sbjct: 130 GRRRDSYYDRGYDRG-YDRYEDYDYRYRRSPSPYYSRYRSRSRSR 173
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 165 (63.1 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 66
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 67 ERIDDSKEAMERANGMELDGRRIRVD 92
Score = 76 (31.8 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 126 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 176
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 163 (62.4 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYF 66
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A + A+G +LDGRR+ VD
Sbjct: 67 ERIDDSKEAMEHANGMELDGRRIRVD 92
Score = 78 (32.5 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ EE DYRY R + S + R+R R Y
Sbjct: 127 GGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSRSRSY 177
Score = 50 (22.7 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDR 449
G R D+ DRG YD +E Y++ +R Y++Y R
Sbjct: 131 GRRRDSYYDRGYDRG-YDRYEEYDYRYRRRSPSPYYSRYRSRSRSR 175
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 167 (63.8 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 32/95 (33%), Positives = 59/95 (62%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
++ +++ + D K LF+ LSY+TTE ++ F YG I +V ++ D+ET++ RG+ F
Sbjct: 10 FNRNSEVIIMSDEGK-LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGF 68
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 218
+ + + D K A +G+++DGR + VD E G++
Sbjct: 69 VTFENPEDAKDAMAAMNGKQVDGRMIRVD-EAGKS 102
Score = 45 (20.9 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 419 GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 454
G Y Y +R G +DR + D D Y E
Sbjct: 189 GGYSSGGGYRDNRNQGGYDRSGGSYRDGYDSYASHE 224
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 165 (63.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 276
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 165 (63.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 276
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 163 (62.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 110 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYF 169
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A + A+G +LDGRR+ VD
Sbjct: 170 ERIDDSKEAMEHANGMELDGRRIRVD 195
Score = 78 (32.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ EE DYRY R + S + R+R R Y
Sbjct: 222 GGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSRSRSY 272
Score = 50 (22.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDR 449
G R D+ DRG YD +E Y++ +R Y++Y R
Sbjct: 226 GRRRDSYYDRGYDRG-YDRYEEYDYRYRRRSPSPYYSRYRSRSRSR 270
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 165 (63.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 227 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 277
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 165 (63.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 106 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 165
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 166 ERIDDSKEAMERANGMELDGRRIRVD 191
Score = 76 (31.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 227 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 277
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 149 (57.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSEN 88
Score = 58 (25.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHR---GYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
G+R Y + + G Y+ +Y + R GYGD Y D YD + ++++
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSRSQGGYGDRSSGGSYRDS----YDSYGKSWFKWE 174
Query: 462 R 462
R
Sbjct: 175 R 175
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 171 (65.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 37/90 (41%), Positives = 52/90 (57%)
Query: 125 DPHN--DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYA 182
D HN D + DP L V LS TTE ++ F YG + V +V D+ T + RG+A
Sbjct: 120 DSHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFA 179
Query: 183 FIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212
F+ + H D K A ++A+G +LDGRR+ VD
Sbjct: 180 FVYFEHIDDAKEAMERANGMELDGRRIRVD 209
Score = 67 (28.6 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 438 RYNQYHDDDNDR-YDQ-MEEDDYRYDRATSESR--DKERTRDLDREY 480
R + Y+D DR YD+ +E DYRY R S S + R+R R Y
Sbjct: 246 RRDSYYDRGYDRGYDRGYDEYDYRYSRRRSPSPYYSRYRSRSRSRSY 292
Score = 41 (19.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 420 WYDHHENYEHHRGYGDHD-RYNQ 441
+YD + + RGY ++D RY++
Sbjct: 250 YYDRGYDRGYDRGYDEYDYRYSR 272
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 155 (59.6 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 50 (22.7 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHR----GYGDHDRYNQYHDDDNDRY 450
G+R Y + E G Y +Y R GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 155 (59.6 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 50 (22.7 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHR----GYGDHDRYNQYHDDDNDRY 450
G+R Y + E G Y +Y R GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 165 (63.1 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVD 193
Score = 69 (29.3 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYR R+ S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRR-RSPSPYYSRYRSRSRSRSY 274
Score = 51 (23.0 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 449
G R D+ DRG YD +E+Y++ R Y++Y R
Sbjct: 230 GRRRDSYYDRGYDRG-YDRYEDYDYRRR-SPSPYYSRYRSRSRSR 272
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 155 (59.6 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 47 (21.6 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
G+R Y E G Y D++ + GY D Y D D Y+ + + R
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYEAGQRAEAR 176
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 165 (63.1 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+ T + RG+AF+ +
Sbjct: 106 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 165
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
D K A ++A+G +LDGRR+ VD
Sbjct: 166 ERIDDSKEAMERANGMELDGRRIRVD 191
Score = 69 (29.3 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 432 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 480
G G R + Y+D DR YD+ E+ DYR R+ S + R+R R Y
Sbjct: 228 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRR-RSPSPYYSRYRSRSRSRSY 276
Score = 51 (23.0 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 449
G R D+ DRG YD +E+Y++ R Y++Y R
Sbjct: 232 GRRRDSYYDRGYDRG-YDRYEDYDYRRR-SPSPYYSRYRSRSRSR 274
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 155 (59.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 44 (20.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 155 (59.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 44 (20.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 155 (59.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 44 (20.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRG----YGDHDRYNQYHDDDNDRY 450
G+R Y + E G Y +Y R YGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGSYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 155 (59.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 44 (20.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 153 (58.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ETTE +++ F YG + V +V D+E+ + RG+ F+ + + D K A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRT 218
+G+ +DGR++ VD + G++
Sbjct: 68 NGKSVDGRQIRVD-QAGKS 85
Score = 46 (21.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 417 DRGWYDHHENYEHHRG-Y---GDHDRYNQYHDDDNDRYDQMEEDDY 458
DRG Y +E+ G Y G D Y + H DR D Y
Sbjct: 115 DRG-YGGSSRFENRSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSY 159
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 149 (57.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSEN 88
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
G+R Y + + G Y D++ + GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 149 (57.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSEN 88
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
G+R Y + + G Y D++ + GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 154 (59.3 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 41 (19.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 451
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 154 (59.3 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 41 (19.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 451
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 154 (59.3 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 41 (19.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 451
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 147 (56.8 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 200 DGRKLDGRRVLVD 212
+G LDGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
Score = 48 (22.0 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR--YNQYHDDD-NDRYD 451
G++ Y + G Y + Y R YG + Y++Y + D YD
Sbjct: 106 GDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSRSQGSYDRYSGGNYRDNYD 155
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 153 (58.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS++TTE ++ F YG I V + ++ETN+ RG+ F+ + + D K A +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 200 DGRKLDGRRVLVDVERGR 217
+G+ +DGR + VD E G+
Sbjct: 67 NGKSVDGRTIRVD-EAGK 83
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 427 YEHHRGYGDHDRYNQYHD 444
Y RG G DR + Y D
Sbjct: 159 YNRDRGSGYGDRSSSYKD 176
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 155 (59.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 40 (19.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 405 GERDYDPTDQEDDRGWYDHHENYEHHRGYGD-HDRYNQ-YHDDDNDRY 450
G+R Y + E G Y +Y R G +DR + + D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYDRSSGGSYRDSYDSY 166
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 134 (52.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D ET + +G+ FI + + A +
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 200 DGRKLDGRRVLVD 212
+G LDGR++ VD
Sbjct: 68 NGESLDGRQIHVD 80
Score = 55 (24.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 399 HERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD----HDRYNQYHDDDN-DRY 450
+ R R G + Y + + G Y + Y R YG +DRY+ + DN DRY
Sbjct: 101 YSRGR-GHQSYGSSRYDSLPGGYGYGYGYGRSRDYGSSQGSYDRYSGGNYRDNYDRY 156
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 147 (56.8 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E ++ F YG I+ V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 200 DGRKLDGRRVLVDVERGRT 218
+G+ +DGR++ VD + G++
Sbjct: 68 NGKTVDGRQIRVD-QAGKS 85
Score = 40 (19.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 419 GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
GW + + YGD + + D D Y
Sbjct: 132 GWIPDYYSSGRESSYGDRSAGGRSYRDSYDSY 163
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 147 (56.8 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 200 DGRKLDGRRVLVD 212
+G LDGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
Score = 40 (19.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 405 GERDYDPTDQEDDR--GW-YDHHENYEHHRGYGDHDRYN--QYHDD-DN 447
G++ Y + + D R G+ Y + + ++ G +DRY+ Y D+ DN
Sbjct: 106 GDQGYG-SGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNYDN 153
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 165 (63.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTES ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 99 HVGNRANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 158
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 159 ENVDDAKEAKERANGMELDGRRIRVD 184
Score = 53 (23.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 211 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 266
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 267 RSRSRSRS 274
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 211 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 266
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 267 RSRSRSRSY 275
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 156 (60.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTR 190
N P +L + +L ++T+ S ++ +F+ +G IK V L D T +PRG+ F+E+ +
Sbjct: 6 NQKNQPM-SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAK 64
Query: 191 DMKAAYKQADGRKLDGRRVLVDV-ERGRTVP 220
D + A K+ +G ++DG R+ V V ++GR+ P
Sbjct: 65 DAEQALKEMNGSEIDGSRIEVFVAQKGRSDP 95
Score = 66 (28.3 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 397 SKHERDRHGERDYDP-TDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQME 454
S +R + + YD D+ DR Y ++ Y D RY++Y+ + R + E
Sbjct: 158 SYRDRKNYHMKSYDKYRDRNHDRSLSRRSREYRNNTSRYRDKRRYDKYYRSTSRRASRHE 217
Query: 455 EDDYRYDRATSESRD--KERTRD 475
+ + Y + S D + TR+
Sbjct: 218 KRNENYKSKYNHSNDDYSDETRN 240
Score = 64 (27.6 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 397 SKHE-RDRHGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 453
S+HE R+ + + Y+ + D D+ H EH +N DD + D
Sbjct: 214 SRHEKRNENYKSKYNHSNDDYSDETRNSSKHSRKEH---VSRSISFNSEKDDAKKKNDNT 270
Query: 454 EEDDYRYDRATSESRDKERTRDLDRE 479
E D D SE R +E ++++E
Sbjct: 271 SERDNSNDWKGSEQRKEEEDEEVEKE 296
Score = 62 (26.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 418 RGWYDHH-ENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 472
R YD +Y + Y H + Y++Y D ++DR +YR + TS RDK R
Sbjct: 149 RSSYDRKMSSYRDRKNY--HMKSYDKYRDRNHDRSLSRRSREYRNN--TSRYRDKRR 201
Score = 46 (21.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 424 HENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
H Y+ GY Y + + D+ R + + + RY S SRDK R R+ +E
Sbjct: 97 HMRYKEKGGYA----YRK-NPDNKIRRRYISKSNSRYG---SYSRDKIRRRERSKE 144
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 406 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDD-NDRYDQMEEDDYRYDRAT 464
+R YD + R H + E+++ +H + Y D+ N +E R
Sbjct: 199 KRRYDKYYRSTSRRASRHEKRNENYKSKYNHSN-DDYSDETRNSSKHSRKEHVSRSISFN 257
Query: 465 SESRDKERTRD 475
SE D ++ D
Sbjct: 258 SEKDDAKKKND 268
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 156 (60.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTR 190
N P +L + +L ++T+ S ++ +F+ +G IK V L D T +PRG+ F+E+ +
Sbjct: 6 NQKNQPM-SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAK 64
Query: 191 DMKAAYKQADGRKLDGRRVLVDV-ERGRTVP 220
D + A K+ +G ++DG R+ V V ++GR+ P
Sbjct: 65 DAEQALKEMNGSEIDGSRIEVFVAQKGRSDP 95
Score = 66 (28.3 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 397 SKHERDRHGERDYDP-TDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQME 454
S +R + + YD D+ DR Y ++ Y D RY++Y+ + R + E
Sbjct: 158 SYRDRKNYHMKSYDKYRDRNHDRSLSRRSREYRNNTSRYRDKRRYDKYYRSTSRRASRHE 217
Query: 455 EDDYRYDRATSESRD--KERTRD 475
+ + Y + S D + TR+
Sbjct: 218 KRNENYKSKYNHSNDDYSDETRN 240
Score = 64 (27.6 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 397 SKHE-RDRHGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 453
S+HE R+ + + Y+ + D D+ H EH +N DD + D
Sbjct: 214 SRHEKRNENYKSKYNHSNDDYSDETRNSSKHSRKEH---VSRSISFNSEKDDAKKKNDNT 270
Query: 454 EEDDYRYDRATSESRDKERTRDLDRE 479
E D D SE R +E ++++E
Sbjct: 271 SERDNSNDWKGSEQRKEEEDEEVEKE 296
Score = 62 (26.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 418 RGWYDHH-ENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 472
R YD +Y + Y H + Y++Y D ++DR +YR + TS RDK R
Sbjct: 149 RSSYDRKMSSYRDRKNY--HMKSYDKYRDRNHDRSLSRRSREYRNN--TSRYRDKRR 201
Score = 46 (21.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 424 HENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
H Y+ GY Y + + D+ R + + + RY S SRDK R R+ +E
Sbjct: 97 HMRYKEKGGYA----YRK-NPDNKIRRRYISKSNSRYG---SYSRDKIRRRERSKE 144
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 406 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDD-NDRYDQMEEDDYRYDRAT 464
+R YD + R H + E+++ +H + Y D+ N +E R
Sbjct: 199 KRRYDKYYRSTSRRASRHEKRNENYKSKYNHSN-DDYSDETRNSSKHSRKEHVSRSISFN 257
Query: 465 SESRDKERTRD 475
SE D ++ D
Sbjct: 258 SEKDDAKKKND 268
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 166 (63.5 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV+RLS TT+ +++ F +G IK RL+ D ET +P+G+ FI + D + A K
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 200 DGRKLDGRRVLVDVER 215
DG+ +DGR + V+V +
Sbjct: 69 DGKIVDGRLIFVEVAK 84
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 162 (62.1 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HIGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVEDAKEAKERANGMELDGRRIRVD 192
Score = 55 (24.4 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G D D++ + Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGGWRAVQDRDQFYRRRSPSPYYSRGGY 275
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 276 RSRSRSRS 283
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 158 (60.7 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 38/100 (38%), Positives = 53/100 (53%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ ERGR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPR 101
Score = 67 (28.6 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR--YDR 462
RDY P ++ Y H + + + RGYGD D Y + D D D YR Y+
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR----DRDYSDHPSGGSYRDSYE- 286
Query: 463 ATSESRDKERTR 474
+ SR TR
Sbjct: 287 SYGNSRSAPLTR 298
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 144 (55.7 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRY-SGR 248
+G LDGR++ VD G++ R +Q Y SGR
Sbjct: 68 NGESLDGRQIRVD-HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGR 116
Score = 40 (19.1 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 405 GERDYDPTDQEDDR--GW-YDHHENYEHHRGYGDHDRYN--QYHDD-DN 447
G++ Y + + D R G+ Y + + ++ G +DRY+ Y D+ DN
Sbjct: 108 GDQGYG-SGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNYDN 155
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 160 (61.4 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ EF YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLV 211
KAA + +G+ LDG+ + V
Sbjct: 62 AKAAARDMNGKSLDGKAIKV 81
Score = 64 (27.6 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 27/91 (29%), Positives = 34/91 (37%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D D + E+Y RG YG RY +Y D
Sbjct: 259 DRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDA 318
Query: 450 YDQMEEDDYR--YDRATSESRDKERTRDLDR 478
Y D Y Y R+ SR + R DR
Sbjct: 319 YSG-GRDSYSSSYGRSDRYSRGRHRVGRPDR 348
Score = 59 (25.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 401 RDRHGERDY-DPTDQEDDRGWYDHHENYEHH--------RGYGDHDRYNQYHDDDNDRYD 451
RD + RDY +P G Y H + Y H RGY D D Y D D D
Sbjct: 217 RDGYSSRDYREPRGFAPSPGEYTHRD-YGHSSVRDDCPLRGYSDRDGYG---GRDRDYGD 272
Query: 452 QMEEDDYR 459
+ +R
Sbjct: 273 HLSRGSHR 280
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 160 (61.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVDDAKEAKERANGMELDGRRIRVD 192
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 160 (61.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVDDAKEAKERANGMELDGRRIRVD 192
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 160 (61.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVDDAKEAKERANGMELDGRRIRVD 192
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 160 (61.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVDDAKEAKERANGMELDGRRIRVD 192
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 160 (61.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ +
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A ++A+G +LDGRR+ VD
Sbjct: 167 ENVDDAKEAKERANGMELDGRRIRVD 192
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 466 ESRDKERT 473
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 471
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 472 RTRDLDREY 480
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 151 (58.2 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 69 (29.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R DR
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQDR 347
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 151 (58.2 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 64 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 103
Score = 62 (26.9 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 246 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 285
Score = 58 (25.5 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 234 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 284
Score = 45 (20.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENY 427
+RD +G RD D +D + D +E+Y
Sbjct: 264 DRDGYG-RDRDYSDHPSGGSYRDSYESY 290
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 151 (58.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 62 (26.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 58 (25.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 282
Score = 45 (20.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENY 427
+RD +G RD D +D + D +E+Y
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESY 288
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 159 (61.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AFI + D
Sbjct: 2 VEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLV 211
KAA + +G+ LDG+ + V
Sbjct: 62 AKAAVRDMNGKSLDGKAIKV 81
Score = 58 (25.5 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 25/90 (27%), Positives = 33/90 (36%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHD-RYNQYHDDDND 448
+RD +G RD D D + D E+Y R YG RY +Y D
Sbjct: 262 DRDGYGGRDRDYADHPSGGSYRDPFESYGDPRSAAPARGPPPSYGGGGGRYEEYRGCSPD 321
Query: 449 RYDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R DR
Sbjct: 322 AYGG-GRDGYAGGRSERYSGGRDRVGRADR 350
Score = 49 (22.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEH--HRGYGDHDRYN----QYHDDDNDRYDQMEEDDYRY 460
RD+ P+ +E Y H + RGYGD D Y Y D + + + Y
Sbjct: 232 RDFAPSPREYTYRDYGHSSARDECPSRGYGDRDGYGGRDRDYADHPSGGSYRDPFESYGD 291
Query: 461 DRATSESR 468
R+ + +R
Sbjct: 292 PRSAAPAR 299
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 150 (57.9 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 36/100 (36%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I + L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 68 (29.0 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR--YDR 462
RDY P ++ Y H + + + RGYGD D Y + D D D YR Y+
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGR----DRDYSDHPSGGSYRDSYE- 283
Query: 463 ATSESRDKERTR 474
+ SR TR
Sbjct: 284 SYGNSRSAPPTR 295
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 151 (58.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 62 (26.9 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 243 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 282
Score = 58 (25.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 231 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 281
Score = 45 (20.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENY 427
+RD +G RD D +D + D +E+Y
Sbjct: 261 DRDGYG-RDRDYSDHPSGGSYRDSYESY 287
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 149 (57.5 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A + +G+ LDG+ + V+
Sbjct: 62 AKDAARDMNGKSLDGKAIKVE 82
Score = 64 (27.6 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 397 SKHERDRHGE-RDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDD 445
S +RD +G RD D +D + D +E+Y + R YG RY+ Y
Sbjct: 252 SYSDRDGYGGGRDRDYSDHPSGGSYRDSYESYGNSRSAPPARGPPPSYGGSSRYDDY-GS 310
Query: 446 DNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
D Y E Y R+ S ++R DR
Sbjct: 311 TRDGYGSRES--YSSSRSDVYSSGRDRVGRQDR 341
Score = 37 (18.1 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 246 SGREQEPSRGPSRSA 260
S R++ PSRG S S+
Sbjct: 238 SSRDEYPSRGYSLSS 252
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 156 (60.0 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+ S P L+V+ LS+ TTE ++ FE +G + + +V DK N+P+G+AF+ Y
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVERGRT-VPNWRPR 225
+ A + G+ LDGR + V+ + R+ + +PR
Sbjct: 129 EEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPR 165
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 151 (58.2 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 65 (27.9 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 261 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 318
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 319 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 346
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 243 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 282
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 151 (58.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 65 (27.9 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 151 (58.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 65 (27.9 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 151 (58.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 65 (27.9 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 151 (58.2 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 37/100 (37%), Positives = 52/100 (52%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 3 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 62
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K A + +G+ LDG+ + V+ E GR P PR
Sbjct: 63 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 102
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 263 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 320
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 321 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 348
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 245 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 284
>FB|FBgn0003742 [details] [associations]
symbol:tra2 "transformer 2" species:7227 "Drosophila
melanogaster" [GO:0007530 "sex determination" evidence=NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006397 "mRNA
processing" evidence=NAS;IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0030237 "female sex determination" evidence=IMP]
[GO:0036002 "pre-mRNA binding" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP;IDA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007283
"spermatogenesis" evidence=NAS] [GO:0019102 "male somatic sex
determination" evidence=TAS] [GO:0019101 "female somatic sex
determination" evidence=NAS;TAS] [GO:0000245 "spliceosomal complex
assembly" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0030154 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0007548
GO:GO:0019102 GO:GO:0071011 GO:GO:0000245 GO:GO:0000381
GeneTree:ENSGT00700000104309 GO:GO:0019101 KO:K12897
eggNOG:NOG297815 EMBL:M23633 EMBL:X57484 EMBL:M30939 EMBL:M76381
EMBL:AY058768 EMBL:J03155 PIR:A32373 PIR:D35846 PIR:S12003
RefSeq:NP_476763.1 RefSeq:NP_476764.1 RefSeq:NP_476765.1
RefSeq:NP_476766.1 RefSeq:NP_599107.1 RefSeq:NP_995834.1
RefSeq:NP_995835.1 UniGene:Dm.4216 ProteinModelPortal:P19018
SMR:P19018 DIP:DIP-17430N IntAct:P19018 MINT:MINT-277223
STRING:P19018 PaxDb:P19018 PRIDE:P19018 EnsemblMetazoa:FBtr0089617
EnsemblMetazoa:FBtr0089620 EnsemblMetazoa:FBtr0089621 GeneID:36619
KEGG:dme:Dmel_CG10128 CTD:36619 FlyBase:FBgn0003742
InParanoid:P19018 OMA:KDACTGM OrthoDB:EOG4TQJSF PhylomeDB:P19018
GenomeRNAi:36619 NextBio:799520 Bgee:P19018 GermOnline:CG10128
Uniprot:P19018
Length = 264
Score = 145 (56.1 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 145 LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204
L+ T++ K++ F YGPI+R+++V D +T + RG+ FI + D +AA G ++
Sbjct: 104 LNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEV 163
Query: 205 DGRRVLVD 212
DGRR+ VD
Sbjct: 164 DGRRIRVD 171
Score = 63 (27.2 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 429 HHRGYGDHDRYNQYHDDDNDRYDQ---MEEDDYRYDRATSESRDK 470
H R +D Y +D NDRYD+ RY R S SR +
Sbjct: 209 HDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYSRSR 253
Score = 60 (26.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 436 HDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDREY 480
HDR +D+ DRYD + RYDR S + R TR+ R Y
Sbjct: 209 HDRSASPYDNYRDRYDYRND---RYDRNLRRSPSRNRYTRN--RSY 249
Score = 48 (22.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 406 ERDYDPTDQEDDRGWYDH-HENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 460
+R P D DR YD+ ++ Y+ + R +RY + R Q+ RY
Sbjct: 210 DRSASPYDNYRDR--YDYRNDRYDRNLRRSPSRNRYTRNRSYSRSRSPQLRRTSSRY 264
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 174 (66.3 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS ETTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 214 PRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 270
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 271 FNSEEDAKAAKEAMEDGEIDGNKVTLD 297
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ L+Y TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 136 SGES-KTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 190
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 191 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 221
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 155 (59.6 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 155 (59.6 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 155 (59.6 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 170 (64.9 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G + R R+VTD+ET +G+ F++
Sbjct: 185 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVD 241
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 242 FNSEEDAKAAKEAMEDGEIDGNKVTLD 268
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTR 190
+V G+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+
Sbjct: 105 HVLGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFE 159
Query: 191 DMKAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
D K A + R+++GR + ++++ R PN R
Sbjct: 160 DAKEALNSCNKREIEGRAIRLELQGPRGSPNAR 192
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 149 (57.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A + +G+ LDG+ + V+
Sbjct: 62 AKDAARDMNGKSLDGKAIKVE 82
Score = 65 (27.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 400 ERDRHG-ERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDND 448
+RD +G ERDY +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYGRERDY--SDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRD 318
Query: 449 RYDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 319 GYGG-SRDSYTSSRSDLYSSGRDRVGRQER 347
Score = 63 (27.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRERDYSDHPSGGSYRD 283
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 149 (57.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A + +G+ LDG+ + V+
Sbjct: 62 AKDAARDMNGKSLDGKAIKVE 82
Score = 65 (27.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 155 (59.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
H + DP L V LS TTE ++ F YGP+ V +V D+++ + RG+A + +
Sbjct: 112 HIGDRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYF 171
Query: 187 MHTRDMKAAYKQADGRKLDGRRVLVD--VERGRTVP 220
+ D K A ++A+G +LDGRR+ VD + +G P
Sbjct: 172 ENREDSKEAKERANGMELDGRRIRVDYSITKGPHTP 207
Score = 48 (22.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 438 RYNQYHDDDNDR-YDQMEEDDYRYDRATSES----RDKERTRDLDREY 480
R +D +R YD E+ DY +R S S R R+R R Y
Sbjct: 226 RRRDSYDRGYERGYDSYEDRDYHNNRRRSPSPYYSRGPYRSRSRSRSY 273
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 151 (58.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVD 212
+G+ +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 141 (54.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 61 (26.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 456
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 457 DYR 459
YR
Sbjct: 352 SYR 354
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 141 (54.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 61 (26.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 456
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 457 DYR 459
YR
Sbjct: 352 SYR 354
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRY-SGREQEPSRG 255
+G LDGR++ VD G++ R +Q Y SGR + G
Sbjct: 68 NGESLDGRQIRVD-HAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 174 (66.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS ETTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 573 PRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 629
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 630 FNSEEDAKAAKEAMEDGEIDGNKVTLD 656
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ L+Y TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 495 SGES-KTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 549
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 550 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 580
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 141 (54.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 418 RGWYDHHENYEHHRGY 433
RGW HE + GY
Sbjct: 120 RGWLPSHEGHLDDGGY 135
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 141 (54.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 418 RGWYDHHENYEHHRGY 433
RGW HE + GY
Sbjct: 120 RGWLPSHEGHLDDGGY 135
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 141 (54.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 141 (54.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 141 (54.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 169 (64.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K FE G + R R+VTD+ET +G+ F++
Sbjct: 417 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVD 473
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D K A + + ++DG +V +D
Sbjct: 474 FNSEEDAKTAKEAMEDGEIDGNKVTLD 500
Score = 120 (47.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V K +GYAFIE+ D
Sbjct: 339 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDA 393
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + +++GR + ++++ R PN R
Sbjct: 394 KEALNSCNKMEIEGRTIRLELQGPRGSPNAR 424
Score = 43 (20.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 5 NDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
+D F +N AAV RT + + + + L LK+F LE KP
Sbjct: 186 SDLFAKNDLAAVDVRTGTNRKFGYVDFES-AEDLEKALELTGLKVFGNEIKLE-KP 239
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 149 (57.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A + +G+ LDG+ + V+
Sbjct: 62 AKDAARDMNGKSLDGKAIKVE 82
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 149 (57.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 39/135 (28%), Positives = 65/135 (48%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+++G +L + LSY+TT + ++R FE YG I V + DK + + +G+ F+ +
Sbjct: 13 PDING--LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GRTVPNWRPRXXXXXXXXXXX-XXXXXNQRYSG 247
RD + A + DG+ +DGR + V + + R R + RYS
Sbjct: 71 RDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYS- 129
Query: 248 REQEPSRGPSRSAEP 262
R + P R SR+ P
Sbjct: 130 RSRSPRRSRSRTRSP 144
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 149 (57.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 39/135 (28%), Positives = 65/135 (48%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+++G +L + LSY+TT + ++R FE YG I V + DK + + +G+ F+ +
Sbjct: 13 PDING--LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GRTVPNWRPRXXXXXXXXXXX-XXXXXNQRYSG 247
RD + A + DG+ +DGR + V + + R R + RYS
Sbjct: 71 RDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYS- 129
Query: 248 REQEPSRGPSRSAEP 262
R + P R SR+ P
Sbjct: 130 RSRSPRRSRSRTRSP 144
>DICTYBASE|DDB_G0292710 [details] [associations]
symbol:DDB_G0292710 "peptidylprolyl isomerase"
species:44689 "Dictyostelium discoideum" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0292710 GO:GO:0006457
GO:GO:0000166 EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
KO:K12735 OMA:DRTQNRS RefSeq:XP_629577.1 ProteinModelPortal:Q54CU3
STRING:Q54CU3 EnsemblProtists:DDB0215524 GeneID:8628838
KEGG:ddi:DDB_G0292710 InParanoid:Q54CU3 ProtClustDB:CLSZ2846584
Uniprot:Q54CU3
Length = 489
Score = 112 (44.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ T ++ F G +K +V DK TN YAF+EY + + A
Sbjct: 241 PDHVLFVCKLNPITEAEDLELVFSQCGTVKSCEVVRDKVTNDSLCYAFVEYSTKEECEKA 300
Query: 196 YKQADGRKLDGRRVLVD 212
Y + + +D RR+ VD
Sbjct: 301 YLKLENILIDERRIHVD 317
Score = 104 (41.7 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 26/65 (40%), Positives = 33/65 (50%)
Query: 398 KHERDRHGERD---YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 454
+ ERDR +RD Y D+E DR Y + Y Y D DRY+ D DN+R E
Sbjct: 429 ERERDRERDRDRDRYSDRDRERDRDRYSDRDRYRDRDRYSDRDRYS---DRDNER--NRE 483
Query: 455 EDDYR 459
+D YR
Sbjct: 484 KDRYR 488
Score = 100 (40.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 401 RDR-HGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY-HDDDNDRYDQMEE--D 456
+DR H +R+Y+ + D+R D E + R D DRY+ + D DRY + D
Sbjct: 406 KDRNHHDRNYNRSYDRDNRNKDDERER-DRERDR-DRDRYSDRDRERDRDRYSDRDRYRD 463
Query: 457 DYRY-DRATSESRDKERTRDLDR 478
RY DR RD ER R+ DR
Sbjct: 464 RDRYSDRDRYSDRDNERNREKDR 486
Score = 93 (37.8 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYD-HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
K R+R + + E D + D +H + ++R Y DR N+ DD+ +R + + D
Sbjct: 383 KDSRERDMKSSSSSSSSESDNRYKDRNHHDRNYNRSY---DRDNRNKDDERERDRERDRD 439
Query: 457 DYRYDRATSESRDKERTRDLDR 478
RY E RD++R D DR
Sbjct: 440 RDRYSDRDRE-RDRDRYSDRDR 460
Score = 91 (37.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDY 458
++ + E+D D + E+ ++ HDR YN+ +D DN D E D
Sbjct: 376 KKQKSNEKDSRERDMKSSSS-SSSSESDNRYKDRNHHDRNYNRSYDRDNRNKDDERERDR 434
Query: 459 RYDRATSESRDKERTRDLDR 478
DR D++R RD DR
Sbjct: 435 ERDRDRDRYSDRDRERDRDR 454
Score = 77 (32.2 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
+K+ + G + Y+ D +DDR + N + R + + ++RY
Sbjct: 353 NKNYQQESGTKGYNYVD-DDDRNFKKQKSNEKDSRERDMKSSSSSSSSESDNRYKDRNHH 411
Query: 457 DYRYDRATS-ESRDKERTRDLDRE 479
D Y+R+ ++R+K+ R+ DRE
Sbjct: 412 DRNYNRSYDRDNRNKDDERERDRE 435
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 148 (57.2 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L++ET E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 200 DGRKLDGRRVLVDVERGRT 218
+G+ +DGR++ VD + G++
Sbjct: 67 NGKSVDGRQIRVD-QAGKS 84
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 148 (57.2 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 35/110 (31%), Positives = 53/110 (48%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRY-SGR 248
+G LDGR++ VD G++ R +Q Y SGR
Sbjct: 68 NGESLDGRQIRVD-HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGR 116
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 138 (53.6 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G L G+ + V+
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVE 81
Score = 74 (31.1 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETRE 304
Score = 64 (27.6 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ +H + E R Y R + Y D + R + Y Y
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNHRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYSYH 333
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 334 DGYGEALGRDHSEHL 348
Score = 61 (26.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 456
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 457 DYR 459
YR
Sbjct: 352 SYR 354
Score = 40 (19.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 418 RGWYDHHENYEHHRGY 433
RGW HE + GY
Sbjct: 120 RGWLPSHEGHLDDGGY 135
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 171 (65.3 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 475 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 531
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 532 FNSEEDAKAAKEAMEDGEIDGNKVTLD 558
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 397 SGES-KTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDA 451
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 452 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 482
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 171 (65.3 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 480 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 536
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 537 FNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 402 SGES-KTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDA 456
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 457 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 487
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 171 (65.3 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 480 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 536
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 537 FNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 402 SGES-KTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDA 456
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 457 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 487
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 152 (58.6 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERG 216
+G+ +DGR++ VD G
Sbjct: 68 NGKSVDGRQIRVDQAGG 84
Score = 45 (20.9 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
G+R Y E G Y D++ + GY D Y D D Y + +
Sbjct: 85 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYGKSHSE 139
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 147 (56.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 200 DGRKLDGRRVLVD 212
+G+ LDGR++ VD
Sbjct: 68 NGKSLDGRQIRVD 80
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 147 (56.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 145 LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204
+ YE TE ++K F GP+ RLV D+ET KP+GY F EY +A + +GR+
Sbjct: 4 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 63
Query: 205 DGRRVLVD 212
GR + VD
Sbjct: 64 SGRALRVD 71
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 147 (56.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 200 DGRKLDGRRVLVDVERGRT 218
+G+ +DGR++ VD + G++
Sbjct: 67 NGKAVDGRQIRVD-QAGKS 84
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 171 (65.3 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G I R R+VTD+ET +G+ F++
Sbjct: 570 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVD 626
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 627 FNSEEDAKAAKEAMEDGEIDGNKVTLD 653
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 492 SGES-KTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDA 546
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 547 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 577
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 155 (59.6 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDN 88
Score = 45 (20.9 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 405 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
G+R Y E G Y D++ + GY D Y D D Y + +
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYGKSHSE 173
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 138 (53.6 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G L G+ + V+
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVE 81
Score = 74 (31.1 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETRE 304
Score = 70 (29.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 404 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
H RDY + D+ RG+ +H + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNHRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 462 RATSESRD 469
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 69 (29.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 404 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 462 RATSESRDKERTRDL 476
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 61 (26.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 423 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 469
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 418 RGWYDHHENYEHHRGY 433
RGW HE + GY
Sbjct: 120 RGWLPSHEGHLDDGGY 135
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 25/84 (29%), Positives = 33/84 (39%)
Query: 401 RDRHGERDYDPT--DQEDDRGWYDHHENY---------EHHRG--YGDH-DRYNQYHDDD 446
RD + RDY + D+ RG Y +H+ Y EH G Y D RY H
Sbjct: 347 RD-YAYRDYGHSSWDEHSSRG-YSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
Query: 447 NDRYDQMEEDDYRYDRATSESRDK 470
R +M A S +RD+
Sbjct: 405 PARGPRMSYGGSTC-HAYSNTRDR 427
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 173 (66.0 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K FE G + R R+VTD+ET +G+ F++
Sbjct: 563 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVD 619
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 620 FNSEEDAKAAKEAMEDGEIDGNKVTLD 646
Score = 120 (47.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V K +GYAFIE+ D
Sbjct: 485 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDA 539
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + +++GR + ++++ R PN R
Sbjct: 540 KEALNSCNKMEIEGRTIRLELQGPRGSPNAR 570
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 83 PGDPLYAPPVEKAETPVE 100
PG A P +KA TP +
Sbjct: 85 PGKKAAATPAKKAVTPAK 102
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 5 NDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
++ F +N AAV RT + + + + L LK+F LE KP
Sbjct: 332 SELFAKNDLAAVDVRTGTNRKFGYVDFES-AEDLEKALELTGLKVFGNEIKLE-KP 385
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 173 (66.0 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K FE G + R R+VTD+ET +G+ F++
Sbjct: 564 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVD 620
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 621 FNSEEDAKAAKEAMEDGEIDGNKVTLD 647
Score = 120 (47.3 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V K +GYAFIE+ D
Sbjct: 486 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDA 540
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + +++GR + ++++ R PN R
Sbjct: 541 KEALNSCNKMEIEGRTIRLELQGPRGSPNAR 571
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 83 PGDPLYAPPVEKAETPVE 100
PG A P +KA TP +
Sbjct: 85 PGKKAAATPAKKAVTPAK 102
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 5 NDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
++ F +N AAV RT + + + + L LK+F LE KP
Sbjct: 333 SELFAKNDLAAVDVRTGTNRKFGYVDFES-AEDLEKALELTGLKVFGNEIKLE-KP 386
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 173 (66.0 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K FE G + R R+VTD+ET +G+ F++
Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVD 616
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLD 643
Score = 124 (48.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 482 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDA 536
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + +++GR + ++++ R PN R
Sbjct: 537 KEALNSCNKMEIEGRTIRLELQGPRGSPNAR 567
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 83 PGDPLYAPPVEKAETPVE 100
PG A P +KA TP +
Sbjct: 84 PGKKAAATPAKKAVTPAK 101
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 146 (56.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I + L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 61 (26.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 241 RDYSHSSSRDDYPSRGYGDR-DGYGRDREYSDHPSGGSYRD 280
Score = 61 (26.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
RDY P ++ Y H + + + RGYGD D Y + D + D YR
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGR----DREYSDHPSGGSYR 279
Score = 60 (26.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHH------RG----YGDHDRYNQY------H 443
+RD +G RD + +D + D +E+Y + RG YG RY+ Y +
Sbjct: 259 DRDGYG-RDREYSDHPSGGSYRDSYESYGNSCSAPPTRGPPPSYGGSSRYDDYSSSRDGY 317
Query: 444 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 480
D Y D Y DR +++ ++R Y
Sbjct: 318 GGSRDSYSSSRSDLYSSDRDRVGRQERGLPPSMERGY 354
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 146 (56.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I + L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD------VERGRTVPNWRPR 225
K + +G+ LDG+ + V+ E GR P PR
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
Score = 61 (26.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 407 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 444
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 241 RDYSHSSSRDDYPSRGYGDR-DGYGRDREYSDHPSGGSYRD 280
Score = 61 (26.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 449
+RD +G RD + +D + D +E+Y + R YG RY+ Y D
Sbjct: 259 DRDGYG-RDREYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 316
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R+ S ++R +R
Sbjct: 317 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 344
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 146 (56.5 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 200 DGRKLDGRRVLVD 212
+G LDGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 146 (56.5 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 35/110 (31%), Positives = 52/110 (47%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L++ T E ++ F S+GPI V +V D+ET + RG+ FI + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRY-SGR 248
+G LDGR++ VD G++ R +Q Y SGR
Sbjct: 68 NGESLDGRQIRVD-HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGR 116
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 170 (64.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G + R R+VTD+ET +G+ F++
Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVD 616
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLD 643
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 482 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 536
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 537 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 567
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 170 (64.9 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G + R R+VTD+ET +G+ F++
Sbjct: 562 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVD 618
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 619 FNSEEDAKAAKEAMEDGEIDGNKVTLD 645
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 484 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 538
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 539 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 569
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 170 (64.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G + R R+VTD+ET +G+ F++
Sbjct: 565 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVD 621
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 622 FNSEEDAKAAKEAMEDGEIDGNKVTLD 648
Score = 131 (51.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 487 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 541
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 542 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 572
Score = 41 (19.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 62 PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEK-AETPVE 100
P K+ P +A PG L A P +K A TP +
Sbjct: 93 PAKKAVAPAKAVATPGKKGTTPGKALVATPGKKGAATPAK 132
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 146 (56.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG + V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A ++ +G+ LDG+ + V+
Sbjct: 62 AKDAARELNGKALDGKPIKVE 82
Score = 59 (25.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/90 (26%), Positives = 35/90 (38%)
Query: 400 ERDRHGERDY-DPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDND 448
+RD +G RD D +D + + D +E Y + R YG RY+ Y D
Sbjct: 240 DRDGYGGRDSRDYSDHQSGGSYRDSYEGYGNSRSAPPARGPPPSYGGSSRYDDY-SSTRD 298
Query: 449 RYDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y D Y R S ++R +R
Sbjct: 299 GYGG--RDSYSSSRNDIYSSGRDRVGRQER 326
Score = 55 (24.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 17/72 (23%), Positives = 24/72 (33%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
K D + RDY + D G +Y + D Y D D Y + D
Sbjct: 192 KDRYDGYSGRDYGSSRDSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSDRDGYGGRDSRD 251
Query: 458 YRYDRATSESRD 469
Y ++ RD
Sbjct: 252 YSDHQSGGSYRD 263
Score = 52 (23.4 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 401 RDRHGERDYDPTDQ---EDDRGWYDHHE--NY-EHHRGYGD 435
RD +G R Y D D R + DH +Y + + GYG+
Sbjct: 230 RDDYGSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGYGN 270
Score = 49 (22.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 432 GYGDHDRYNQYHDDD----NDRYDQMEED-DYRY-DRATSESRDKERTRDL-DRE 479
GY DRY+ Y D D D DY Y D S SRD +R DR+
Sbjct: 188 GYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSDRD 242
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F E
Sbjct: 5 PVRDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
Y +A + +GR+ GR + VD
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVD 90
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 145 (56.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+++V ++TTE ++ F S G I VR+V D+ET +PRG+AFIE+ + A +Q
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 199 ADGRKLDGRRVLVDV 213
+G + +GR + V++
Sbjct: 66 MNGAEFNGRPLRVNL 80
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 130 (50.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 125 DPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFI 184
D ND N+ +FV LS++ TE +++ F+ YG I +++ ++T +PRG+ FI
Sbjct: 3 DRENDGNLES----RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
Query: 185 EYMHTRDMKAAYKQADGRKLDGRRVL 210
+ R A K GR+L G +V+
Sbjct: 59 TFTDRRGADDAIKHMHGREL-GNKVI 83
Score = 72 (30.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 400 ERDRHGERDYDP-TDQEDDR--GWYDHHENYEHHRGYGDHDRYN-QYHDDDNDRY--DQM 453
ER+R ER++D D DR G Y + + ++ Y D Y + + DR+ D+
Sbjct: 166 EREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPPGDRFVSDRY 225
Query: 454 EEDDYRYDRATSESRDKERTRDLDR 478
++ + +E R +ER+ D DR
Sbjct: 226 GMPEHHLE---NEYRGRERSYDRDR 247
Score = 68 (29.0 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRYDQMEEDDY 458
RDR+G+RD + ++E +R +D + + R D RY+ Y D D D+Y+ D Y
Sbjct: 157 RDRYGDRDLE-RERERERE-FDRYMDGRRDR---DGGRYS-YRDRFDSGDKYEP--RDHY 208
Query: 459 RYDR 462
++R
Sbjct: 209 PFER 212
Score = 64 (27.6 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 398 KHE-RDRHG-ERDYDPTDQ--EDDRGWYDHH-EN-YE-HHRGYGDHDRYNQYHDDDNDRY 450
K+E RD + ER P D+ D G +HH EN Y R Y D DRY + D +DRY
Sbjct: 201 KYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLENEYRGRERSY-DRDRYAR---DTSDRY 256
Query: 451 DQM 453
M
Sbjct: 257 GDM 259
Score = 38 (18.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 468 RDKERTRDLDREY 480
RD ER R+ +RE+
Sbjct: 163 RDLEREREREREF 175
Score = 37 (18.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 459 RYDRATSESRDKERTRDLDR 478
RY E R++ER R+ DR
Sbjct: 159 RYGDRDLE-REREREREFDR 177
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRP 224
+G K+ GR + VD V N+RP
Sbjct: 98 NGIKIKGRTIRVD-----HVANYRP 117
Score = 81 (33.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ ERDR GER+ D ++E DRG E + R G R + D + +R + D
Sbjct: 252 QRERDREGEREGDK-ERERDRGRQRDGER-QRERD-GGRQRDGE-RDRERERDGGRQRDG 307
Query: 458 YRY-DRATSESRDKERTRDLDRE 479
R +R RD ER R+ +R+
Sbjct: 308 ERQRERDGGRQRDGERDRERERD 330
Score = 69 (29.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 400 ERDRHG--ERDYD-PTDQEDDRGWY-DHHENYEHHRGYG---DHDR-YNQYHDDDNDR-Y 450
ER+R G +RD D +QE D G D + E R G D DR Q D R
Sbjct: 326 ERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQEQERDGGRQRDV 385
Query: 451 DQMEEDDYRYDRATSESRDKERTRDLDRE 479
++++E + R RD+ER RD R+
Sbjct: 386 EKVKERERDGGRQRDGERDRERERDGGRQ 414
Score = 66 (28.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 28/83 (33%), Positives = 35/83 (42%)
Query: 400 ERDRHGERDYD-PTDQEDDR--GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
ER+R G R D DQE +R G E + G R D + DR + E D
Sbjct: 358 ERERDGGRQRDGDRDQEQERDGGRQRDVEKVKERERDGGRQR-----DGERDR--ERERD 410
Query: 457 DYRYDRATSESRDKERTRDLDRE 479
R E R ++R RD DRE
Sbjct: 411 G---GRQRDEERVRQRERDRDRE 430
Score = 64 (27.6 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 29/89 (32%), Positives = 36/89 (40%)
Query: 401 RDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGY---GDHDRYNQY---HDDDNDRYDQM 453
R R GERD ++E D G D E G G+ DR + D DR +
Sbjct: 287 RQRDGERD---RERERDGGRQRDGERQRERDGGRQRDGERDRERERDGGRQRDGDRDREQ 343
Query: 454 EEDDYRY---DRATSESRDKERTRDLDRE 479
E D R +R RD R RD DR+
Sbjct: 344 ERDGGRQRDVERDRERERDGGRQRDGDRD 372
Score = 51 (23.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 400 ERDRHGERDYDPTDQEDDRG---WYDHHENYEHHR 431
ER R ERD D+E DRG DH EH R
Sbjct: 418 ERVRQRERD---RDRERDRGNGKHRDHSREREHRR 449
Score = 50 (22.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 437 DRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
D Q + + +R ++ ++ D R+ RD+E R+ D+E
Sbjct: 225 DEQEQLKEKERER-EEGKKTDRRHAETQQRERDREGEREGDKE 266
Score = 49 (22.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYG---DHDRYNQY 442
ERDR ERD E+ + + E RG G DH R ++
Sbjct: 402 ERDRERERDGGRQRDEERVRQRERDRDRERDRGNGKHRDHSREREH 447
Score = 40 (19.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHEN 426
+ ERDR ERD D +H N
Sbjct: 422 QRERDRDRERDRGNGKHRDHSREREHRRN 450
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 144 (55.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS+ T +S +K+ F S+G + ++ D+ET + RG+ F+ + A K+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 200 DGRKLDGRRVLVDVERGRT 218
DG++L+GR++ V++ R+
Sbjct: 97 DGKELNGRQIRVNLATERS 115
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 125 (49.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ TT+ ++ F +G IK ++ D +T + YAFIE+ D + A
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGLIKCCEIIRDWKTGESLCYAFIEFEKEEDCEKA 297
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPNWR 223
Y + D +D RR+ VD + + W+
Sbjct: 298 YFKMDNVLIDDRRIHVDFSQSVSKIKWK 325
Score = 84 (34.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 472
D+++D G D E E R + D +R D D + E+D R S SRD+ER
Sbjct: 368 DEDEDDGRKDDREKRERKR-HSDSERTKDKRSKDRDE-SRREKDK---SRQRSRSRDRER 422
Query: 473 TRDLDRE 479
+D RE
Sbjct: 423 QKDKQRE 429
Score = 55 (24.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 398 KHERDRHG--ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 455
K ER RH ER D ++ D + ++ + R DR Q D +R +
Sbjct: 381 KRERKRHSDSERTKDKRSKDRDESRREKDKSRQRSRS---RDRERQ-KDKQRERGRDRDG 436
Query: 456 DDYRYDRATSESRDKER 472
D R+ R S S + R
Sbjct: 437 DHKRHRRERSRSPKRSR 453
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 170 (64.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P PN P KTLFV LS +TTE +K F+ G + R R+VTD+ET +G+ F++
Sbjct: 561 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVD 617
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVD 212
+ D KAA + + ++DG +V +D
Sbjct: 618 FNSEEDAKAAKEAMEDGEIDGNKVTLD 644
Score = 131 (51.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D
Sbjct: 483 SGES-KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 537
Query: 193 KAAYKQADGRKLDGRRVLVDVERGRTVPNWR 223
K A + R+++GR + ++++ R PN R
Sbjct: 538 KEALNSCNKREIEGRAIRLELQGPRGSPNAR 568
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 62 PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEK-AETPVE 100
P K+ P +A A PG L A P +K A P +
Sbjct: 93 PAKKTVTPAKAVATPGKKGATPGKALVATPGKKGAAIPAK 132
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 164 (62.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM-KAAYKQ 198
++V LSY+ T +++ F YG I+ +L+ D+ET + +G+AFI Y T+D + A +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITY-GTQDAAQEAVSK 78
Query: 199 ADGRKLDGRRVLVDVERGRT 218
A+G L GR++ V++ R T
Sbjct: 79 ANGIDLQGRKIRVNIARENT 98
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM-KAAYKQ 198
++V LSY+ T +++ F YG I+ +L+ D+ET + +G+AFI Y T+D + A +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITY-GTQDAAQEAVSK 78
Query: 199 ADGRKLDGRRVLVDVERGRT 218
A+G L GR++ V++ R T
Sbjct: 79 ANGIDLQGRKIRVNIARENT 98
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 139 (54.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 34/126 (26%), Positives = 60/126 (47%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ TT+ ++ F S+G +K ++ D++T YAF+E+ + +AA
Sbjct: 238 PENVLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAA 297
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRG 255
Y + D +D RR+ VD + + WR + N R ++P+ G
Sbjct: 298 YFKMDNVLIDDRRIHVDFSQSVSKVTWRGKGRGIEGDYRKLDFN--NLRDDKDHRKPNNG 355
Query: 256 PSRSAE 261
SR+ +
Sbjct: 356 RSRTED 361
Score = 72 (30.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
RD+ G+R D+ D R ++ E + R + + R NQ + R +D+R
Sbjct: 498 RDQTGKRPTQNRDRNDSRRFHSPQEGRRNDERSHRETSR-NQRRSPER-RQQSRNREDHR 555
Query: 460 YDRATSESRDKERTRDLDRE 479
D +S ++ E+ R L E
Sbjct: 556 MDTHSSPNKSHEKKRKLSVE 575
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V L +S+++R F YGP++ V + + P G+AF+E+ RD A ++
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDATDAVREL 65
Query: 200 DGRKLDGRRVLVDVERG--RT-----VPNW--RPR 225
DGR L G RV V++ G RT P+W RPR
Sbjct: 66 DGRTLCGCRVRVELSNGEKRTRSRGPPPSWNRRPR 100
Score = 42 (19.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 462 RATSESRDKERTRDLDRE 479
R+ S SR++ R R L RE
Sbjct: 125 RSRSFSRERRRERSLSRE 142
Score = 37 (18.1 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 450 YDQMEEDDYRYDRATSESRDKERTRDLDR 478
+++ DDYR + + R R R R
Sbjct: 95 WNRRPRDDYRRRSSPPQRRRSPRRRSFSR 123
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 131 (51.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P DP + TL+V LS+ TTE ++ F G IKR+ + D+ P G+ F+E
Sbjct: 39 PQEDPLANST---TLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVE 95
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
Y +D K G KLD R + D++ G
Sbjct: 96 YYTHQDAIDCMKYIGGTKLDERVIRTDLDPG 126
Score = 46 (21.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
D +E R YG Q D+ + YD+ R + E+R +E+ D E
Sbjct: 122 DLDPGFEEGRQYGRGKSGGQVRDEYREDYDEGRGGLGRAIQMEREARAREQRDSRDEE 179
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 164 (62.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 140 (54.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 44 (20.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 438 RYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
RY + D + R R R+ S SR + R+R R
Sbjct: 91 RYGRPPDSHHSRRGPPPRSPRRRRRSRSRSRSRSRSRSRSR 131
Score = 43 (20.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 459 RYDRATSESRDKERTRDLDR 478
RY R+ S SR + R+R +
Sbjct: 131 RYSRSKSRSRTRSRSRSTSK 150
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 164 (62.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 164 (62.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 164 (62.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 164 (62.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 164 (62.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 164 (62.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 164 (62.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 164 (62.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 164 (62.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 152 (58.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET+E ++ F +G I V L+ D+ETNK RG+AF+ Y + D K A ++
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 200 DGRKLDGRRVLVD 212
+G+ LDG+ + V+
Sbjct: 70 NGKPLDGKPIKVE 82
Score = 47 (21.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 430 HRGYGDHDRYNQYHDDDNDRYDQMEE------DDYRYDRATSESRDKERTRDLDREY 480
+ G G RY+ Y D Y + D Y +R R + L+R Y
Sbjct: 292 YSGSGGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYSTNRGDRPGRQERGPPPLERGY 348
Score = 45 (20.9 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 407 RDYDPTDQEDDRGWYDHH----ENY-EHHRGYGDHDRY 439
RDY P ++ Y H ++Y RGY D D Y
Sbjct: 214 RDYGPPPRDYPYREYSGHSSSRDDYGSGSRGYSDRDGY 251
Score = 38 (18.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 401 RDRHGERDYDPTDQED 416
RD +G RD P+ + D
Sbjct: 309 RDGYGSRDSYPSSRSD 324
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 111 (44.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
S PY ++V L+Y+ E + F YG I LV +KET + +G+ F+ Y +
Sbjct: 30 SHSPY--IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKST 87
Query: 193 KAAYKQADGRKLDGRRVLVD 212
A +G L G+ + VD
Sbjct: 88 VLAVDNLNGINLLGKTIKVD 107
Score = 92 (37.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 32/82 (39%), Positives = 41/82 (50%)
Query: 401 RDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQMEEDDY 458
+DR R + D+E DR Y D N R Y D R ++ D RY D+ E +Y
Sbjct: 273 KDRSRSRSRE-RDRERDRERYRDRDRNRSREREYRDRSR-SRSKSRDRYRYRDRSREREY 330
Query: 459 RYDRATSESRDKERTRDLDREY 480
R DR SRD+ER RD R+Y
Sbjct: 331 R-DR----SRDRERYRD-SRDY 346
Score = 77 (32.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR- 459
RD+H R+ D+ DR + E R + DR +Y D D +R E +YR
Sbjct: 259 RDKHNHRNTS-RDRIKDRS---RSRSRERDR---ERDR-ERYRDRDRNR---SREREYRD 307
Query: 460 YDRATSESRDKERTRDLDRE 479
R+ S+SRD+ R RD RE
Sbjct: 308 RSRSRSKSRDRYRYRDRSRE 327
Score = 70 (29.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 400 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG---YGDHDRYNQYHDDDNDRYDQMEED 456
ERDR RD D ++ +R + D + R Y D R +Y D DR +
Sbjct: 286 ERDRERYRDRD-RNRSREREYRDRSRSRSKSRDRYRYRDRSREREYRDRSRDRERYRDSR 344
Query: 457 DYR 459
DYR
Sbjct: 345 DYR 347
Score = 61 (26.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 445 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 479
D N D++E D R TS R K+R+R RE
Sbjct: 248 DQNKSNDKLENRDKHNHRNTSRDRIKDRSRSRSRE 282
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 434 GDHDRYN-QYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GD ++ N + + D + D + DR+ S SR+++R RD +R
Sbjct: 247 GDQNKSNDKLENRDKHNHRNTSRDRIK-DRSRSRSRERDRERDRER 291
Score = 55 (24.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 407 RDYD-PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 465
+DY P +D D ++ +++ G D N DDDN+ D E+ + R
Sbjct: 110 KDYKRPKKNNEDLTDTDDDDDDDNNSDDGTDD--NSDSDDDNNNNDNDEKKKEKKKRKLE 167
Query: 466 ESRDKERTRDLDRE 479
+ K++ R+ R+
Sbjct: 168 KKLKKKQKREEKRK 181
Score = 48 (22.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDDDNDRY------DQMEEDDYRYDRATSESRDKERTRD 475
DH ++Y+ + + D + DDD+D D + DD + E + +++ R
Sbjct: 107 DHVKDYKRPKK-NNEDLTDTDDDDDDDNNSDDGTDDNSDSDDDNNNNDNDEKKKEKKKRK 165
Query: 476 LDRE 479
L+++
Sbjct: 166 LEKK 169
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN 221
D + + GR++ + +G R PN
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPN 94
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V L+Y ++ ++R F +YG +K ++V D+ T + RG+ F+E ++ +AA
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 200 DGRKLDGRRVLVDVER 215
+G+++DGR ++V+ R
Sbjct: 65 NGKEMDGRNLMVNEAR 80
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 158 (60.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
+ D + LF+ L+ +T E +K EF YG I +V L+ D++TNK RG+AF+ + D
Sbjct: 2 MEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLV 211
KAA + +G+ LDG+ ++V
Sbjct: 62 AKAAARDMNGKYLDGKAIMV 81
Score = 53 (23.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 407 RDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRY-NQYHDDDNDRYDQMEEDDYRYDR 462
+ Y +D+ G Y+ ++ GDHDR N Y +DRY + + R DR
Sbjct: 969 KSYGLSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSY--GRSDRYSRGRDRVGRPDR 1023
Score = 50 (22.7 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 408 DYDPTDQEDDRGWYDHHE--NYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 459
D+ P ++ R +Y H +Y RG G+ N Y D++ D + YR
Sbjct: 251 DFVPALRDYSRRYYGHSSVPDYRPLRGDGNQ---NGYRGRDHEYTDHPSKGSYR 301
Score = 48 (22.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 419 GWYDHHEN-YEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR----YDRATSESRD 469
G D N Y+ YG Y +Y +D + + D Y A S RD
Sbjct: 840 GGRDSSSNSYDRSHRYGGGGHYEEYRGRSHDTHSRGRSPDAHSGDHYTEAYSRGRD 895
Score = 43 (20.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 21/83 (25%), Positives = 29/83 (34%)
Query: 402 DRHGER----DYDPTDQEDDRGWYDHHEN-YEHHRGYGDHDRYNQYHDDDND-RYDQMEE 455
DR+GE +Y + G + N Y YG RY +Y ++ R
Sbjct: 381 DRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHYGGEGRYEEYRGRSHEARSGGRST 440
Query: 456 DDY---RYDRATSESRDKERTRD 475
D + R D A S D D
Sbjct: 441 DAHSRGRSDDAYSGGHDSSSWSD 463
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 423 HHENYEHHRGYGDHDRYNQY 442
H + HR YG RY +Y
Sbjct: 764 HDSSSRSHR-YGGGGRYEEY 782
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 424 HENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKE 471
H++ YG RY +Y D D Y R S +
Sbjct: 693 HDSSSQSNRYGGGGRYEEYRGHSLDANSGGRSPD-TYSRGHDSSSQSD 739
Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY 450
RG + ++ YG RY +Y D +
Sbjct: 928 RGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAH 960
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGALLDGRELRVQMARYGR 94
Score = 46 (21.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 449 RYDQMEEDDYRYDRATSESRDKERT 473
RY + Y R+ S SR K RT
Sbjct: 145 RYSRSRSRSYSRSRSRSRSRSKTRT 169
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 460 YDRATSESRDKERTR 474
Y R+ S SR + +TR
Sbjct: 154 YSRSRSRSRSRSKTR 168
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 459 RYDRATSESRDKERTRDLDR 478
RY R+ S S + R+R R
Sbjct: 145 RYSRSRSRSYSRSRSRSRSR 164
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 438 RYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTR 474
RY Y R + + R+ S SR + R+R
Sbjct: 109 RYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSRSR 145
Score = 38 (18.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 459 RYDRATSESRDKERTRDLDR 478
++ R+ S SR + R+R R
Sbjct: 126 KHSRSRSRSRSRSRSRSRSR 145
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 140 (54.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 156 (60.0 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 46/136 (33%), Positives = 64/136 (47%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G TL V L+Y T+ ++R FE YG + V + + T PRG+AF+ +
Sbjct: 8 PDVDG--MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GRT-VPNWRPRXXXXXXXXXXXXXXXXNQRYSG 247
RD + A DG +LDGR + V V R GR +P R R ++ Y
Sbjct: 66 RDAQDAEAAMDGAELDGRELRVQVARYGRRDLP--RSRQGEPRGRSRGGGYGRRSRSYGR 123
Query: 248 REQEPSRGP-SRSAEP 262
R + P R SRS P
Sbjct: 124 RSRSPRRRHRSRSRGP 139
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 146 (56.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG + V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A ++ +G+ LDG+ + V+
Sbjct: 62 AKDAARELNGKALDGKPIKVE 82
Score = 52 (23.4 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 401 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
RD +G R Y +D+ D G D + +H G D Y Y + R+ +E D
Sbjct: 230 RDDYGSRGY--SDR-DGYGGRDSRDYSDHPSGGSYRDSYESY---EGPRHHMVEAVD 280
Score = 52 (23.4 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 21/86 (24%), Positives = 31/86 (36%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYG---DHDRYNQYHDDDNDRYDQME 454
K D + RDY + D R + +Y + R YG D Y D D Y +
Sbjct: 192 KDRYDGYSGRDYGSS--RDSRDYGPPPRDYAY-RDYGHSSSRDDYGSRGYSDRDGYGGRD 248
Query: 455 EDDYRYDRATSESRDKERTRDLDREY 480
DY + RD + + R +
Sbjct: 249 SRDYSDHPSGGSYRDSYESYEGPRHH 274
Score = 49 (22.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 432 GYGDHDRYNQYHDDD----NDRYDQMEED-DYRY-DRATSESRDKERTRDL-DRE 479
GY DRY+ Y D D D DY Y D S SRD +R DR+
Sbjct: 188 GYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYAYRDYGHSSSRDDYGSRGYSDRD 242
>UNIPROTKB|H7BXF3 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
Uniprot:H7BXF3
Length = 127
Score = 112 (44.5 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 163 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212
PI V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 2 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 51
Score = 46 (21.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 433 YGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSE---SRDKERTRDLDREY 480
YG R Y+D DR YD + Y R + SR R+R R Y
Sbjct: 72 YGS-SRRRDYYDRGYDRGYDDRDYYSRSYRRRSPSPYYSRGGYRSRSRSRSY 122
Score = 46 (21.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 418 RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERT 473
R +YD Y+ RGY D D Y++ Y + Y Y R SR + R+
Sbjct: 78 RDYYDR--GYD--RGYDDRDYYSR-------SYRRRSPSPY-YSRGGYRSRSRSRS 121
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 140 (54.3 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 44 (20.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 432 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 137 (53.3 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
S P LF+ LS+ E +K F S+G + VR+ DK + + RG+ F+++ D
Sbjct: 36 SASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA 95
Query: 193 KAAYKQADGRKLDGR--RVLVDVERGRTVPNWRPR 225
+A DG+ L GR R+ +ER R P PR
Sbjct: 96 LSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPR 130
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 137 (53.3 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+ V L + T+E +KREF ++G I V+L+ D+ + +GYAFI++ D A +
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 200 DGRKLDGRRVLVDVER 215
D R +GR + +D+ +
Sbjct: 102 DRRMYNGRMIYIDIAK 117
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 129 (50.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
+S DP F+ L++ T++ ++ FE YG + ++V DK + + RG+ FI + +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
M A +G LDGR + VD
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD 81
Score = 61 (26.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 28/87 (32%), Positives = 36/87 (41%)
Query: 397 SKHERD---RHGERDYDPTDQEDDR-GWYDHHENYEHHRGYG-DHDRYNQYHD---DDND 448
S+ RD R +D D +DDR G D + R YG DRY+ D +D
Sbjct: 135 SESSRDGGGRFSSKD-DRYSSKDDRYGAKDDRYGAKEDR-YGAKDDRYSSKDDRYSSKDD 192
Query: 449 RYDQMEEDDYRYDRATSESRDKERTRD 475
RY + RY S R R+RD
Sbjct: 193 RYGSRDGGGSRYGPDRSGERAGGRSRD 219
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+++V + Y+ TE +I F + G + VR+V D+ET +PRG+AF+E+ + A +Q
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 199 ADGRKLDGRRVLVD 212
+G +GR + V+
Sbjct: 67 LNGVAFNGRNLRVN 80
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 143 (55.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 429 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 143 (55.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 429 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 143 (55.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R PN + + +R R E
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
Query: 254 RGPSRS 259
R SRS
Sbjct: 128 RSRSRS 133
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 429 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 144 (55.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 35/128 (27%), Positives = 59/128 (46%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ + ++REF YGPI V + D +PRG+A++++ RD + A
Sbjct: 8 PNSSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPS 253
D + + GR++ + +G R P+ + + N+R R E
Sbjct: 68 LHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGSSTYGSSRYDDDRYNRRSRSRSYERR 127
Query: 254 RGPSRSAE 261
R SRS E
Sbjct: 128 RSRSRSIE 135
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 431 RGYGDHDRYNQYHDDDN-DRYDQMEEDDYRY-DRATSESRDKERTR 474
RG+ D ++ + +R + EE + R+ S SR K R+R
Sbjct: 203 RGHSKADSKSRCRESSKYNRESRREEQASKSPSRSVSRSRSKSRSR 248
Score = 37 (18.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQ 441
+ R R E++Y ++ RG E R DH R+N+
Sbjct: 127 RRSRSRSIEQNYGRSNSP--RGGRGA-ERLRRSRSRSDHGRFNR 167
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 113 (44.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V S+ T + EFE YG + R + + + R +AF+EY RD AY
Sbjct: 7 TLYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSASS-RLFAFVEYEDRRDADEAYHD 65
Query: 199 ADGRKLDGRRVLVDVERGRTVPN--WR 223
++L GR ++ +E RT P+ WR
Sbjct: 66 MHNKRL-GRDDILKIEWARTPPSASWR 91
Score = 73 (30.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
+ +RDR +RDYD D DR +N + R D DR DD DR + +
Sbjct: 133 RRDRDRDRDRDYD-RDSRRDRDRSRSPDNRDRDREMKDVDR------DDRDRRENGTNGE 185
Query: 458 YRYDRATSESRDKERTRDLD 477
R + ++S R DLD
Sbjct: 186 DR--KPAADSPPPAREEDLD 203
Score = 70 (29.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 413 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 472
D+ DRG D R Y +DR D+ + D YDR + RD+ R
Sbjct: 99 DRGSDRG--DRSRRSPRRGRSPSPPRRRDYSPRKDDRRDRDRDRDRDYDRDSRRDRDRSR 156
Query: 473 T---RDLDRE 479
+ RD DRE
Sbjct: 157 SPDNRDRDRE 166
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 435 DHDRYNQYHDDD--NDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 480
D DR + D + R + R D + + ++R RD DR+Y
Sbjct: 97 DRDRGSDRGDRSRRSPRRGRSPSPPRRRDYSPRKDDRRDRDRDRDRDY 144
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I+ F G +KR+ + DK P G+ F+EY D + A +
Sbjct: 44 TLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF 103
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R V D + G
Sbjct: 104 INGTRLDDRIVRTDWDAG 121
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
G P +TL+V LS + TE I + F GP K +++T+ +N P Y F+E+ RD
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAA 62
Query: 194 AAYKQADGRKLDGRRVLVD 212
AA +GRK+ G+ V V+
Sbjct: 63 AALAAMNGRKILGKEVKVN 81
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/93 (32%), Positives = 46/93 (49%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 192 MKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 224
K A + +G+ + + + R+ W P
Sbjct: 64 AKDAARDMNGKGVPSSTRFLQQFKPRSTKRWWP 96
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SGD FV L++ T + ++ F YG + +++ D+ET + RG+ F+ + + M
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 193 KAAYKQADGRKLDGRRVLVDVERGR 217
K A + +G+ LDGR + V+ + R
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEAQSR 87
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+++V ++TTE + F G + VR+V D+ET +PRG+AF+E+ + A Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 199 ADGRKLDGRRVLVDVERGR 217
+G +GR + V++ + R
Sbjct: 65 FNGVDFNGRALRVNLAQNR 83
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+++V ++TTE + F G + VR+V D+ET +PRG+AF+E+ + A Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 199 ADGRKLDGRRVLVDVERGR 217
+G +GR + V++ + R
Sbjct: 65 FNGVDFNGRALRVNLAQNR 83
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 139 (54.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVDG--MTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GR 217
RD + A DG LDGR + V + R GR
Sbjct: 66 RDAEDAMDAMDGAILDGRELRVQMARYGR 94
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/77 (22%), Positives = 24/77 (31%)
Query: 403 RHG-ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 461
RHG R P + R + R R Y + + +
Sbjct: 118 RHGARRSRSPRRRRRSRS-RSRSRSRSRSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPS 176
Query: 462 RATSESRDKERTRDLDR 478
R+ S SR K R+R R
Sbjct: 177 RSRSRSRSKSRSRSRSR 193
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 127 (49.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 98 NGIKIKGRTIRVD 110
Score = 66 (28.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 397 SKHERDRHGERDY-DPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 454
SKHE R+ + +E DRG D H R G HDR ++ R +
Sbjct: 255 SKHEHKSSSRREEREDRHRERDRGRSSDIHSRRHDRRSEGRHDRGSEGRSH-RSR-SRSR 312
Query: 455 EDDYRYDRATSESRDKERTRDLDREY 480
+ +R+ ++ SRD+E + + Y
Sbjct: 313 DKSHRHKKSR-HSRDRESSNPRELRY 337
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 133 (51.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I+ F G +KR+ + DK P G+ F+EY D + A +
Sbjct: 44 TLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF 103
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R + D + G
Sbjct: 104 INGTRLDDRIIRTDWDAG 121
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 154 (59.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 125 DPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFI 184
D + ++ +++FV + YE TE K+K F GP+ ++LV D+E+ KP+G+ F
Sbjct: 3 DKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFC 62
Query: 185 EYMHTRDMKAAYKQADGRKLDGRRVLVD 212
EY +A + +G ++ GR + VD
Sbjct: 63 EYKDQETALSAMRNLNGYEIGGRTLRVD 90
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 157 (60.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTR 190
N P KTLFV LS +TTE +K FE G + R R+VTD+ET +G+ F+++
Sbjct: 562 NSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEE 618
Query: 191 DMKAAYKQADGRKLDGRRVLVD 212
D KAA + + ++DG +V +D
Sbjct: 619 DAKAAKEAMEDGEIDGNKVTLD 640
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP V +++FV + YE TE ++K F G + RLV D+ET KP+GY F EY
Sbjct: 16 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQD 74
Query: 189 TRDMKAAYKQADGRKLDGRRVLVD 212
+A + +GR+ GR + VD
Sbjct: 75 QETALSAMRNLNGREFSGRALRVD 98
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 153 (58.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 79
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 80 NLNGREFSGRALRVD 94
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 131 (51.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/86 (27%), Positives = 51/86 (59%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
++++V + Y++T +++ F G I+RV ++ D+ + P+GYA+IE+ T ++ A
Sbjct: 28 RSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAID 87
Query: 198 QADGRKLDGRRVLVDVERGRTVPNWR 223
+ G++ GR + V +R +P +R
Sbjct: 88 ELHGKEFRGRELRVTAKR-TNLPGFR 112
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 131 (51.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 141 FVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200
FV L + T + ++ F YG + +++TD+ET + RG+ F+ + M+ A + +
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 201 GRKLDGRRVLVDVERGR 217
G+ LDGR + V+ + R
Sbjct: 69 GQDLDGRNITVNEAQSR 85
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P S + TLFV RLS+ ++ +KREFE G + R++ ++ T K RGY ++++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVERGR 217
+ A ++ G+++DGR + +D+ G+
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P TLF+ LS+ + F YG + R+ T +T +P+G+ ++++ + KAA
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPN 221
+ +G ++GR +D R N
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTN 353
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P S + TLFV RLS+ ++ +KREFE G + R++ ++ T K RGY ++++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVERGR 217
+ A ++ G+++DGR + +D+ G+
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P TLF+ LS+ + F YG + R+ T +T +P+G+ ++++ + KAA
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPN 221
+ +G ++GR +D R N
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTN 353
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 135 (52.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ TT+ ++ F +GPIK ++ D +T + YAFIE+ D + A
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPNWR 223
Y + D +D RR+ VD + W+
Sbjct: 298 YFKMDNVLIDDRRIHVDFSQSVAKIKWK 325
Score = 59 (25.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 406 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR-YDRAT 464
++ Y D+EDD+ + ++ H G ++ + DR+ R Y +
Sbjct: 388 KKHYHSEDEEDDKRTKKYKDSDRKHEGERCREKMKS---EKKDRHRSRSRSQERSYSKHK 444
Query: 465 SESRDKERTRDLDRE 479
+ R+ R RD D++
Sbjct: 445 DKYREDVRIRDWDKK 459
Score = 52 (23.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 397 SKHERDRHGERDYDPTDQ--EDDRGWYD-HHENYEHHRGYG-DHDRYNQYHDDDNDRYDQ 452
S+ E D + Y +D+ E +R E + HR +R H D +
Sbjct: 393 SEDEEDDKRTKKYKDSDRKHEGERCREKMKSEKKDRHRSRSRSQERSYSKHKDKYREDVR 452
Query: 453 MEEDDYRYDRATS--ESRDKERTR 474
+ + D + DR+ S +S+DKER++
Sbjct: 453 IRDWDKKRDRSRSPKKSKDKERSK 476
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 130 (50.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
K L+V +SYE TE ++R F G + V ++TD ET + +G ++ + + K A +
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 198 QADGRKLDGRRVLVDVER 215
DG L R + V V R
Sbjct: 63 TLDGALLRNRVITVSVAR 80
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 130 (50.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
K L+V +SYE TE ++R F G + V ++TD ET + +G ++ + + K A +
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 198 QADGRKLDGRRVLVDVER 215
DG L R + V V R
Sbjct: 63 TLDGALLRNRVITVSVAR 80
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 153 (58.9 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 153 (58.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 153 (58.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>WB|WBGene00000890 [details] [associations]
symbol:sig-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0040007
GO:GO:0006457 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS
EMBL:Z97628 EMBL:Z81080 PIR:T22008 RefSeq:NP_492343.2 HSSP:Q27450
ProteinModelPortal:G5EEW6 SMR:G5EEW6 PRIDE:G5EEW6
EnsemblMetazoa:F39H2.2a GeneID:172664 KEGG:cel:CELE_F39H2.2
CTD:172664 WormBase:F39H2.2a NextBio:876477 Uniprot:G5EEW6
Length = 427
Score = 113 (44.8 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ TT+ ++ F +G I +V D+ + YAFIE+ + + + A
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
Query: 196 YKQADGRKLDGRRVLVD 212
+ + D +D RR+ VD
Sbjct: 299 FFKMDNVLIDDRRIHVD 315
Score = 81 (33.6 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 399 HERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH-DRYNQYHDDDNDRYDQMEEDD 457
H+R R P+ ++D + Y E R +H DR Y D++ DR D + D
Sbjct: 352 HQRSPSPRRRRSPSPKKDKKRDY-RREPARRRRSSDNHRDRDRSYRDNNRDRRDNHRDSD 410
Query: 458 Y---RYDRATSESRDK 470
R+DR+ RD+
Sbjct: 411 RDRRRHDRSPDRRRDR 426
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 153 (58.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 153 (58.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 153 (58.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F G + RLV D+ET KP+GY F EY +A +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 129 (50.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 24/88 (27%), Positives = 50/88 (56%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TLFV +S+ +TE + + F YG + +V ++ DK +P+G+A++ + + + A +
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 199 ADGRKLDGRRVLVDVERG--RTVPNWRP 224
+ + +DGR V++D + P+ +P
Sbjct: 82 LNAQLVDGRVVILDTTKAAKHNPPDTKP 109
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 129 (50.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV+ LS TT K++ F S+G + R++TD+++ + +G+ F+ Y D + A +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 200 DGRKLDGRRVLVDVERGR 217
+ + LDG + VD R R
Sbjct: 96 NAKFLDGWVIFVDPARPR 113
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 129 (50.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 21/77 (27%), Positives = 47/77 (61%)
Query: 141 FVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200
FV L++ T + ++R F +G + +++ D+E+ + RG+ F+ + + M+ A ++ +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 201 GRKLDGRRVLVDVERGR 217
G++LDGR + V+ + R
Sbjct: 69 GKELDGRVITVNEAQSR 85
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 142 (55.0 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER-GRTVPNWR------PRXXXXXXXXXXXXXXXXN 242
RD + A DG LDGR + V + R GR + PR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRSPRRR 125
Query: 243 QRYSGREQEPSRGPSRS 259
+R R + SR SRS
Sbjct: 126 RRSRSRSRSRSRSRSRS 142
>DICTYBASE|DDB_G0282873 [details] [associations]
symbol:DDB_G0282873 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0282873 GO:GO:0000166
EMBL:AAFI02000047 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG313287
RefSeq:XP_639372.1 ProteinModelPortal:Q54RW5
EnsemblProtists:DDB0233751 GeneID:8623811 KEGG:ddi:DDB_G0282873
InParanoid:Q54RW5 OMA:RDRDDHD Uniprot:Q54RW5
Length = 952
Score = 107 (42.7 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 16/72 (22%), Positives = 43/72 (59%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+++ L + TT+ +++ F +G I +++ ++ K +GYAF+E+ H + A +
Sbjct: 165 LYISGLEWWTTDQQLENVFLEFGKIVTLKIFENENNGKSKGYAFVEFEHIEQAQLAKSKT 224
Query: 200 DGRKLDGRRVLV 211
+ ++++G+ + +
Sbjct: 225 EKKEINGKEMTI 236
Score = 95 (38.5 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 24/77 (31%), Positives = 36/77 (46%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDD-DNDRYDQMEE 455
S+ +RD H + ++ DR +D + R DHD + D D DR D+ +
Sbjct: 600 SRRDRDDHDSNSNSSSRRDRDRDDHDSSSSSRRDRDRDDHDSSSSSRRDRDRDR-DRERD 658
Query: 456 DDYRYDRATSESRDKER 472
D DR + +RDKER
Sbjct: 659 RDRSSDRRSESTRDKER 675
Score = 85 (35.0 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 26/83 (31%), Positives = 35/83 (42%)
Query: 401 RDRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDR--YNQYHDDDNDRYDQMEEDD 457
RDR +RD +D DR +D N + R DHD N+ DD+D
Sbjct: 540 RDRDRDRDDHDSGSSRRDRDDHDSGNNSSNRRDRDDHDSGSSNRRDRDDHDSGSSSNSGS 599
Query: 458 YRYDRATSESRDKERTR-DLDRE 479
R DR +S +R D DR+
Sbjct: 600 SRRDRDDHDSNSNSSSRRDRDRD 622
Score = 84 (34.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
S + RDR ++ R D H++ + D DR + HD + + D
Sbjct: 580 SSNRRDRDDHDSGSSSNSGSSRRDRDDHDSNSNSSSRRDRDRDD--HDSSSSSRRDRDRD 637
Query: 457 DYRYDRATSESRDKERTRDLDRE 479
D+ D ++S RD++R RD +R+
Sbjct: 638 DH--DSSSSSRRDRDRDRDRERD 658
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 400 ERDRHG-ERD-YDPT-DQEDDRGWYDHHENY----EHHRGYGDHDRYNQYHDDDNDRYDQ 452
ERDR ERD YD D++ DR YD + +H G DR + HD N+ ++
Sbjct: 513 ERDRERRERDDYDNRRDRDRDRDDYDRRDRDRDRDDHDSGSSRRDRDD--HDSGNNSSNR 570
Query: 453 MEEDDYRYDRATSESRDKE 471
+ DD+ D +S RD++
Sbjct: 571 RDRDDH--DSGSSNRRDRD 587
Score = 79 (32.9 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD-DDNDR-YDQMEE 455
+ ER+R ERD + +++D YD+ + + R D+DR ++ D DD+D + +
Sbjct: 505 ERERERDRERDRERRERDD----YDNRRDRDRDRD--DYDRRDRDRDRDDHDSGSSRRDR 558
Query: 456 DDYRYDRATSESRDKE 471
DD+ +S RD++
Sbjct: 559 DDHDSGNNSSNRRDRD 574
Score = 75 (31.5 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 27/77 (35%), Positives = 35/77 (45%)
Query: 402 DRHGE-RDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR--YDQMEEDDY 458
D HGE R D D D+R + + E R + D Y+ D D DR YD+ + D
Sbjct: 491 DYHGEKRKRD--DDVDER---ERERDRERDRERRERDDYDNRRDRDRDRDDYDRRDRDRD 545
Query: 459 RYDRATSESRDKERTRD 475
R D + SR R RD
Sbjct: 546 RDDHDSGSSR---RDRD 559
Score = 74 (31.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 397 SKHERDRH--GERDYDPTDQED-DRGWYDHHENYEHHRGY----GDHDRYNQYHDDDNDR 449
S+ +RD H G + D++D D G + + +H G G R HD +++
Sbjct: 554 SRRDRDDHDSGNNSSNRRDRDDHDSGSSNRRDRDDHDSGSSSNSGSSRRDRDDHDSNSNS 613
Query: 450 YDQMEEDDYRYDRATSESRDKER 472
+ + D +D ++S RD++R
Sbjct: 614 SSRRDRDRDDHDSSSSSRRDRDR 636
Score = 69 (29.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 417 DRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDL 476
DR D+H E + D D + D + DR ++ E DDY R RD RD
Sbjct: 486 DRYGGDYHG--EKRKRDDDVDERERERDRERDR-ERRERDDYDNRRDRDRDRDDYDRRDR 542
Query: 477 DRE 479
DR+
Sbjct: 543 DRD 545
Score = 66 (28.3 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 421 YDHHENYEHHRGYGDHDRYN-QYHDDDNDRYDQMEEDDYRYDRATSESR----DKERTRD 475
Y + E G DRY YH + R D ++E + DR R D + RD
Sbjct: 470 YSSSKRDEWSSGGSSPDRYGGDYHGEKRKRDDDVDERERERDRERDRERRERDDYDNRRD 529
Query: 476 LDRE 479
DR+
Sbjct: 530 RDRD 533
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 398 KHERDRHGERDYDPT-DQE-DDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 455
+ +RDR +R + T D+E DDR D+ + +H+ D D + + E
Sbjct: 656 ERDRDRSSDRRSESTRDKERDDRS--DNRSSRDHY----DRDSTRDRETSSSSGSGKREN 709
Query: 456 DDYRYDRATSESRDKERTRD 475
D Y ++ S +RD+E RD
Sbjct: 710 DSYPSSKSDS-NRDREN-RD 727
Score = 61 (26.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 19/73 (26%), Positives = 27/73 (36%)
Query: 397 SKHERDR--HGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 454
S+ +RDR H D++ DR + R D+ D+ D +
Sbjct: 630 SRRDRDRDDHDSSSSSRRDRDRDRDRERDRDRSSDRRSESTRDKERDDRSDNRSSRDHYD 689
Query: 455 EDDYRYDRATSES 467
D R DR TS S
Sbjct: 690 RDSTR-DRETSSS 701
Score = 60 (26.2 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/83 (27%), Positives = 31/83 (37%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
S RDR RDY T R D + G D + Y + D+
Sbjct: 717 SDSNRDREN-RDYSSTTSGSKRESKDRASDSNQSSSGGRKDSDHSYSSSGSGNRDR---- 771
Query: 457 DYRYDRATSESRDKERTRDLDRE 479
D DR TS + KE + + DR+
Sbjct: 772 DRDRDRDTSSNARKETSDNRDRD 794
Score = 59 (25.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 405 GERDYD--PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDR 462
G+R+ D P+ + D ++ + Y + ++ D + ++ D+ Y
Sbjct: 705 GKRENDSYPSSKSDSNRDRENRD-YSSTTSGSKRESKDRASDSNQSSSGGRKDSDHSYSS 763
Query: 463 ATSESRDKERTRDLD 477
+ S +RD++R RD D
Sbjct: 764 SGSGNRDRDRDRDRD 778
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 148 (57.2 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 125 DPHNDPNVSGDPYKT--LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYA 182
D + + P KT LF+ LS+ T+E ++ FE +G + V+++ DK + + +GYA
Sbjct: 267 DSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
Query: 183 FIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215
F+EY A K+ +G+ ++G ++VDV +
Sbjct: 327 FLEYTTEEAAGTALKEMNGKIINGWMIVVDVAK 359
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV +SY T E ++ F YG + +++ D+ET + RG+AF+ + T + A Q
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 200 DGRKLDGRRVLVD--VERG 216
DG+ L GRR+ V+ ERG
Sbjct: 95 DGQDLHGRRIRVNYATERG 113
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L++ TT+ ++ F YG I+ +V D++TN+ RG+ F+ + + AA
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 200 DGRKLDGRRVLVD 212
+ ++ DGR + VD
Sbjct: 64 NNQEFDGRIIRVD 76
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I F G ++ + + DK P G+ F+EY + +AA +
Sbjct: 31 TLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRF 90
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R + VD + G
Sbjct: 91 VNGTRLDDRLIRVDWDAG 108
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L Y+ TE + F YG + + LV DK+T K +G+ F+ Y R A
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 200 DGRKLDGRRVLVDVERGRTVPNWRP 224
+G K+ GR + VD V N+RP
Sbjct: 98 NGIKIKGRTIRVD-----HVANYRP 117
>DICTYBASE|DDB_G0287197 [details] [associations]
symbol:ncbp2 "nuclear cap-binding protein subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000339 "RNA cap binding"
evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
Length = 234
Score = 130 (50.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
D T++V LS+ TTE ++ F G IKR+ + D+ P G+ F+EY D
Sbjct: 29 DKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVEYYSKEDAAD 88
Query: 195 AYKQADGRKLDGRRVLVDVERG 216
K +G KLD R + D + G
Sbjct: 89 CIKYINGSKLDERLIRCDWDYG 110
Score = 47 (21.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 424 HENYEHHRGYGDHD---RYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRD 475
H+ Y+ G + + N+ DDD+D + + +++ + ++ + R RD
Sbjct: 176 HQLYQQANAGGPQNYSGKRNRGADDDSDSFKRQRDNNGSISAGNTPNKGRFRERD 230
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 117 (46.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+L++ RLS ETT+ + F YG I R + K+TN R YAF+EY RD A K
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDV---KKTNG-RCYAFVEYKERRDADDALKA 57
Query: 199 ADGRKLDGRRVLVDVERG 216
+G L ++ V+ +G
Sbjct: 58 LNGTTLLNSKISVEWAKG 75
Score = 69 (29.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/96 (30%), Positives = 37/96 (38%)
Query: 399 HERDRHGER----DYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQM 453
H RDR R +D D+ DR D + R DR D DR D
Sbjct: 114 HSRDRRSRRYRSPSWDRRDRSRDRS-RDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRDGR 172
Query: 454 EE---D-------DYRYDRATSESRDKERTRDLDRE 479
E D D R +R TS R ++R+RD R+
Sbjct: 173 RERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRSRD 208
Score = 60 (26.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/80 (27%), Positives = 29/80 (36%)
Query: 400 ERDRHGERDYDPT-DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDY 458
+R R R+ D + D+ DR + R R N D DR +
Sbjct: 182 DRSRDARRNRDTSRDRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDR-SRSNGGGS 240
Query: 459 RYDRATSESRDKERTRDLDR 478
RY SRD+ R R DR
Sbjct: 241 RYSSRRDRSRDRSRDRSRDR 260
Score = 57 (25.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 401 RDRHGERDYDP----TDQEDDRGWYDHHE-NYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 455
RDR +R D D DR + + + + R G RY+ D DR
Sbjct: 199 RDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRSRSNGGGSRYSSRRDRSRDR----SR 254
Query: 456 DDYRYDRATSESRDKERTRDLDRE 479
D R DR+ S ++K+R L +E
Sbjct: 255 DRSR-DRSRSLKKEKKRDSSLSKE 277
Score = 55 (24.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/83 (24%), Positives = 29/83 (34%)
Query: 397 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 456
S+ RDR +R D+ D G + + R + D DR D
Sbjct: 150 SRDRRDRRRDRRDRSRDRSRD-GRRERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRSRD 208
Query: 457 DYRYDRATSESRDKERTRDLDRE 479
R TS R + +RD R+
Sbjct: 209 GGNIIRDTSRDRRRNNSRDRSRD 231
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 242 NQRYSGREQEPSRGPSRS 259
N +GR +E SR SRS
Sbjct: 292 NANGNGRSRERSRSRSRS 309
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P P V ++ ++V L ++ +++R F +G + R+V+D+ET + RG+ F++
Sbjct: 196 PERQPRVYDAAFR-IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 218
+ ++ A DG+ L+GR + V+V RT
Sbjct: 255 MSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 192 MKAAYKQADGRKL 204
K A + +G+ +
Sbjct: 64 AKDAARDMNGKMM 76
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I F G +KR+ + DK G+ F+EY D + A +
Sbjct: 38 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRF 97
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R V D + G
Sbjct: 98 INGTRLDDRIVRTDWDAG 115
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 145 (56.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV +SY+ +E I+ F G + +++V D+ET KP+GY FIE+ + + A +
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 198 QADGRKLDGRRVLVDVERG 216
+G +L GR + VD G
Sbjct: 78 NLNGYELSGRILRVDSAAG 96
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 127 (49.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 97 NGIKIKGRTIRVD 109
Score = 57 (25.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD---HDRYNQYHDDDNDRYDQME 454
KHE R+ + ++ DRG + HH G+ + H ++ DR + +
Sbjct: 250 KHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHH-GHSEGRSHRSRSRSRSRSPDRSHRHK 308
Query: 455 EDDYRYDRATSESRDK 470
+ Y ++R + + D+
Sbjct: 309 KHRYSHERESFHASDR 324
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 452 QMEEDDYRYDRATSESRD-KERTRDLDR 478
+ +++ ++++ S R+ +E++RD DR
Sbjct: 243 EAKKEKHKHEHKPSSRREGEEKSRDKDR 270
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 127 (49.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 98 NGIKIKGRTIRVD 110
Score = 57 (25.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 398 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD---HDRYNQYHDDDNDRYDQME 454
KHE R+ + ++ DRG + HH G+ + H ++ DR + +
Sbjct: 251 KHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHH-GHSEGRSHRSRSRSRSRSPDRSHRHK 309
Query: 455 EDDYRYDRATSESRDK 470
+ Y ++R + + D+
Sbjct: 310 KHRYSHERESFHASDR 325
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 452 QMEEDDYRYDRATSESRD-KERTRDLDR 478
+ +++ ++++ S R+ +E++RD DR
Sbjct: 244 EAKKEKHKHEHKPSSRREGEEKSRDKDR 271
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 121 (47.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
T+++ +S+ TTE ++ F G IK++ + DK T P G+ F+ + D + A K
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 199 ADGRKLDGRRVLVDVERG 216
G LD R + VD + G
Sbjct: 95 ISGTILDDRPIRVDFDWG 112
Score = 59 (25.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 401 RDRHGERDYDPTDQ-EDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM--EEDD 457
++RHG DY Q +DDR D+ H D D + + N R+ + +DD
Sbjct: 191 QNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTD--SDMRPEKNPRFRESGDSDDD 248
Query: 458 YRYDR 462
DR
Sbjct: 249 GEDDR 253
Score = 58 (25.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 411 PTDQEDDR-GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT-SESR 468
PT+ + R G ++ + ++ G GD+ R Q DD R + D+ R T S+ R
Sbjct: 173 PTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTDSDMR 232
Query: 469 DKERTR 474
++ R
Sbjct: 233 PEKNPR 238
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
KTL+V LS + TE+ I + F GP K +++ D N P Y F+E+ R AA
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 64
Query: 198 QADGRKLDGRRVLVD 212
+GRK+ G+ V V+
Sbjct: 65 AMNGRKIMGKEVKVN 79
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
KTL+V LS + TE+ I + F GP K +++ D N P Y F+E+ R AA
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 64
Query: 198 QADGRKLDGRRVLVD 212
+GRK+ G+ V V+
Sbjct: 65 AMNGRKIMGKEVKVN 79
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKL 204
K A K +G+ +
Sbjct: 61 AKNAAKDMNGKMM 73
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 192 MKAAYKQADGR 202
K A + +G+
Sbjct: 62 AKDAARDMNGK 72
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V LS TT+ ++ F YG + ++ D+ T++ RG+ F+ Y + +AA
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 200 DGRKLDGRRVLV 211
DG++L+GRRV V
Sbjct: 65 DGKELNGRRVSV 76
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ T ++ ++ F +G + +++ D+ET + RG+ F+ + AA +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 200 DGRKLDGRRVLVDVERGR 217
DG++L+GR + V+ R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 129 (50.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P LFV +L+ TT+ ++ F +GPI+ ++ D +T + YAFIE+ D + A
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297
Query: 196 YKQADGRKLDGRRVLVDVERGRTVPNWR 223
+ + D +D RR+ VD + W+
Sbjct: 298 FFKMDNVLIDDRRIHVDFSQSVAKVKWK 325
Score = 60 (26.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 415 EDDRGWYDH----HENYEHHRGYGDHDR-YNQYHDDDNDRYDQM-----EEDDYRYDRAT 464
ED + + H H+ HH D Y + + D Y +M EE++ +++
Sbjct: 372 EDSKSSHSHTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMGFGHYEEEESCWEKQK 431
Query: 465 SESRDKERTRDLDR 478
SE RD+ + R R
Sbjct: 432 SEKRDRTQNRSRSR 445
Score = 56 (24.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 399 HERDRHGERDYDPTDQEDDRGWYD-HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 457
H +H ++ + +++++D + + N + +R G + Y ++++ Q E
Sbjct: 380 HTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMG----FGHYEEEESCWEKQKSE-- 433
Query: 458 YRYDRATSESRDKERTRD 475
+ DR + SR + R RD
Sbjct: 434 -KRDRTQNRSRSRSRERD 450
Score = 49 (22.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/97 (24%), Positives = 41/97 (42%)
Query: 399 HERDRHGERDYDP---TDQEDDR----GWYDHHENYEHHRGYGDHDR-YNQYHDDDNDR- 449
H + + DY P T+Q+ R G Y+ E+ + DR N+ +R
Sbjct: 391 HCSEEKEDEDYMPIKNTNQDIYREMGFGHYEEEESCWEKQKSEKRDRTQNRSRSRSRERD 450
Query: 450 --YDQMEEDDYR---YDRATSESRDKERT--RDLDRE 479
Y + Y+ Y+R S+ RD+ R+ + D+E
Sbjct: 451 GHYSNSHKSKYQTDLYERERSKKRDRSRSPKKSKDKE 487
Score = 45 (20.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 422 DHHENYEHHRGYGDHDRYNQYHDD--DNDRYDQMEEDDYRYDRATSESRDKERTR 474
D +N R Y+ H D Y++ R+ +S+DKE+++
Sbjct: 436 DRTQNRSRSRSRERDGHYSNSHKSKYQTDLYERERSKKRDRSRSPKKSKDKEKSK 490
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 40/123 (32%), Positives = 54/123 (43%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+L V L ++ + ++R FE +GP+K + L D T PRG+ FI++M D A Q
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 199 ADGRKLDGRRV-LVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGP- 256
DG L GR + +V E R P RYS R P RG
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYS-RSPPPRRGRR 156
Query: 257 SRS 259
SRS
Sbjct: 157 SRS 159
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 128 (50.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ T + REF YGPI V + D T PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN 221
D + + GR++ + +G + PN
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDQKTPN 94
Score = 50 (22.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 439 YNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTR 474
Y+ DD DRY + Y R+ S S D R
Sbjct: 105 YSSSRYDDYDRYRRSRSQSYERRRSRSRSFDYNNRR 140
Score = 49 (22.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 421 YDHHENYE--HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 478
Y++ +Y + R G R ++ H D NDR + +++ + + + R KER ++ +
Sbjct: 136 YNNRRSYSPRNSRPAGRPQR-SRSHSD-NDRKKERKKERKKERKKERKKRKKERKKERKK 193
Query: 479 E 479
E
Sbjct: 194 E 194
Score = 37 (18.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 242 NQR-YSGREQEPSRGPSRS 259
N+R YS R P+ P RS
Sbjct: 138 NRRSYSPRNSRPAGRPQRS 156
WARNING: HSPs involving 522 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 480 322 0.00085 116 3 11 23 0.46 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 772
No. of states in DFA: 606 (64 KB)
Total size of DFA: 233 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.71u 0.15s 27.86t Elapsed: 00:00:01
Total cpu time: 27.73u 0.15s 27.88t Elapsed: 00:00:02
Start: Sat May 11 05:47:47 2013 End: Sat May 11 05:47:49 2013
WARNINGS ISSUED: 2