BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011668
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEK-----RKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 249
RTV WRPR N R+SGR+
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEK-----RKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 249
RTV WRPR N R+SGR+
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ + + D K
Sbjct: 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 72
Query: 195 AYKQADGRKLDGRRVLVD 212
A ++A+G +LDGRR+ VD
Sbjct: 73 AKERANGMELDGRRIRVD 90
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ + + D K
Sbjct: 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 103
Query: 195 AYKQADGRKLDGRRVLVD 212
A ++A+G +LDGRR+ VD
Sbjct: 104 AKERANGMELDGRRIRVD 121
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+++FV + YE TE ++K F GP+ RLV D+ET KP+GY F EY +A +
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 198 QADGRKLDGRRVLVD 212
+GR+ GR + VD
Sbjct: 69 NLNGREFSGRALRVD 83
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ + + D K
Sbjct: 10 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 69
Query: 195 AYKQADGRKLDGRRVLVD 212
A ++A+G +LDGRR+ VD
Sbjct: 70 AKERANGMELDGRRIRVD 87
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
DP L V LS TTE ++ F YGPI V +V D+++ + RG+AF+ + + D K
Sbjct: 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 72
Query: 195 AYKQADGRKLDGRRVLV 211
A ++A+G +LDGRR+ V
Sbjct: 73 AKERANGMELDGRRIRV 89
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LS++T E +++ F YG I V +V D+ET + RG+ F+ + + D K A
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74
Query: 200 DGRKLDGRRVLVDVERGRTVPN 221
+G+ +DGR++ VD + G++ N
Sbjct: 75 NGKSVDGRQIRVD-QAGKSSDN 95
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV LSY ++E +++ F +YGP+ + D T KP+G+AF+ +M AY +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 200 DGRKLDGRRVLV 211
DG+ GR + V
Sbjct: 71 DGQVFQGRMLHV 82
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
PN P KTLFV LS +TTE +K ES+ R R+VTD+ET +G+ F+++
Sbjct: 8 PNARSQPSKTLFVKGLSEDTTEETLK---ESFDGSVRARIVTDRETGSSKGFGFVDFNSE 64
Query: 190 RDMKAAYKQADGRKLDGRRVLVD 212
D KAA + + ++DG +V +D
Sbjct: 65 EDAKAAKEAMEDGEIDGNKVTLD 87
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 128 NDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
+ P+V G TL V L+Y T+ ++R FE YG + V + + T PRG+AF+ +
Sbjct: 6 SGPDVDG--MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFH 63
Query: 188 HTRDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A DG +LDGR + V V R
Sbjct: 64 DRRDAQDAEAAMDGAELDGRELRVQVAR 91
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 42 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 99
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A DG LDGR + V + R
Sbjct: 100 RDAEDAMDAMDGAVLDGRELRVQMAR 125
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I F G IK++ + DK G+ F+EY D + A +
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R + D + G
Sbjct: 101 INGTRLDDRIIRTDWDAG 118
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRD 191
V D LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60
Query: 192 MKAAYKQADGRKLDGRRVLVD 212
K A K +G+ L G+ + V+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVE 81
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V L + TE ++ FE +G I+ ++L+ D ET + +GY FI + + K A +Q
Sbjct: 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88
Query: 200 DGRKLDGR 207
+G +L GR
Sbjct: 89 NGFELAGR 96
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ + RD + A
Sbjct: 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131
Query: 199 ADGRKLDGRRVLVDVER 215
DG LDGR + V + R
Sbjct: 132 MDGAVLDGRELRVQMAR 148
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
KTL ++ LSY TE ++ FE IK V + K +GYAFIE+ D K A
Sbjct: 16 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 71
Query: 198 QADGRKLDGRRVLVDVERGRTVPNWRP 224
+ R+++GR + ++++ R PN P
Sbjct: 72 SCNKREIEGRAIRLELQGPRGSPNSGP 98
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L TE +K+ F+ GPI ++++ DK NK YAF+EY + D A +
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQ 59
Query: 198 QADGRKLDGRRVLVD 212
+G++++ V ++
Sbjct: 60 TLNGKQIENNIVKIN 74
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
S D LFV L+ + ++ F+ + ++ D +T RGY F+ + D
Sbjct: 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142
Query: 193 KAAYKQADGRKLDGR 207
+ A G+ L+GR
Sbjct: 143 QNAMDSMQGQDLNGR 157
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84
Query: 199 ADGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 85 LNGQDLMGQPISVD 98
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
G P +TL+V LS + TE I + F GP K +++T+ +N P Y F+E+ RD
Sbjct: 13 GQP-RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAA 69
Query: 194 AAYKQADGRKLDGRRVLVD 212
AA +GRK+ G+ V V+
Sbjct: 70 AALAAMNGRKILGKEVKVN 88
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83
Query: 199 ADGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 84 LNGQDLMGQPISVD 97
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 183
Y P V D LF+ L + ++K S+GP+K LV D T +GYAF
Sbjct: 101 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160
Query: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLV 211
EY+ A +G +L +++LV
Sbjct: 161 CEYVDINVTDQAIAGLNGMQLGDKKLLV 188
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V + YE E I++ F +GPIK + + D T K +G+AF+EY + A +Q
Sbjct: 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90
Query: 200 DGRKLDGRRVLV 211
+ L GR + V
Sbjct: 91 NSVMLGGRNIKV 102
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
+ ++VA + + ++ IK FE++G IK L D T K +GY FIEY
Sbjct: 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEY 174
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E E +I+ +F YG IK + L D+ T +GYA +EY + AA +
Sbjct: 28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87
Query: 199 ADGRKLDGRRVLVD 212
+G ++ G+ + VD
Sbjct: 88 LNGAEIMGQTIQVD 101
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V + YE E I++ F +GPIK + + D T K +G+AF+EY + A +Q
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 75
Query: 200 DGRKLDGRRVLV 211
+ L GR + V
Sbjct: 76 NSVMLGGRNIKV 87
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
+ ++VA + + ++ IK FE++G IK L D T K +GY FIEY
Sbjct: 110 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 159
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 11 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 70
Query: 199 ADGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 71 LNGQDLMGQPISVD 84
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 9 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Query: 199 ADGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 69 LNGQDLMGQPISVD 82
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E E +I+ +F YG IK + L D+ T +GYA +EY + AA +
Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133
Query: 199 ADGRKLDGRRVLVD 212
+G ++ G+ + VD
Sbjct: 134 LNGAEIMGQTIQVD 147
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 9 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Query: 199 ADGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 69 LNGQDLMGQPISVD 82
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ ++V L Y T ++K F +G + V+L+ D+ET KP+G+ F+E M + A
Sbjct: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE-MQEESVSEAIA 60
Query: 198 QADGRKLDGRRVLV 211
+ D GR + V
Sbjct: 61 KLDNTDFMGRTIRV 74
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V + YE E I++ F +GPIK + D T K +G+AF+EY + A +Q
Sbjct: 15 VYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQX 74
Query: 200 DGRKLDGRRVLV 211
+ L GR + V
Sbjct: 75 NSVXLGGRNIKV 86
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
+ ++VA + + ++ IK FE++G IK L D T K +GY FIEY + + A
Sbjct: 109 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 168
Query: 197 KQADGRKLDGRRVLV 211
+ L G+ + V
Sbjct: 169 SSXNLFDLGGQYLRV 183
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV LS E T IK F +G I R+V D T K +GY F+ + + D + A +Q
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77
Query: 200 DGRKLDGRRV 209
G+ L GR++
Sbjct: 78 GGQWLGGRQI 87
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 14 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 72
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 73 RPHKVDGRVV 82
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 103 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 151
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 73
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 74 RPHKVDGRVV 83
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 17 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 75
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 76 RPHKVDGRVV 85
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 106 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 154
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 74
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 75 RPHKVDGRVV 84
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 74
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 75 RPHKVDGRVV 84
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L + ++K S+GP+K LV D T +GYAF EY+ A
Sbjct: 99 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 158
Query: 200 DGRKLDGRRVLV 211
+G +L +++LV
Sbjct: 159 NGMQLGDKKLLV 170
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ LS+ETT+ ++ FE +G + ++ D T + RG+ F+ Y ++ AA A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 67
Query: 200 DGRKLDGRRV 209
K+DGR V
Sbjct: 68 RPHKVDGRVV 77
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 146
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV + E TE I +F YG IK + L D+ T +GY +EY ++ +AA +
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + VD
Sbjct: 70 NGQDLMGQPISVD 82
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L + ++K S+GP+K LV D T +GYAF EY+ A
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156
Query: 200 DGRKLDGRRVLV 211
+G +L +++LV
Sbjct: 157 NGMQLGDKKLLV 168
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 185
P N D + L V + E ++++ FE YGPI+ V++V D+ET + RGY F++
Sbjct: 31 PPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVK 90
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLV 211
+ + A +G + +R+ V
Sbjct: 91 FQSGSSAQQAIAGLNGFNILNKRLKV 116
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V L +++++R F YGP++ V + + P G+AF+E+ RD A ++
Sbjct: 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 130
Query: 200 DGRKLDGRRVLVDVERG 216
DGR L G RV V++ G
Sbjct: 131 DGRTLCGCRVRVELSNG 147
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
+ +FV L Y TT++ +++ FE +G I+ ++TD++T K RGY F+ + A
Sbjct: 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 76
Query: 197 KQADGRKLDGRRVLVDV 213
K + +DGR+ V++
Sbjct: 77 KDPN-PIIDGRKANVNL 92
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V L +++++R F YGP++ V + + P G+AF+E+ RD A +
Sbjct: 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRDL 130
Query: 200 DGRKLDGRRVLVDVERG 216
DGR L G RV V++ G
Sbjct: 131 DGRTLCGCRVRVELSNG 147
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV LS E T IK F +G I R+V D T K +GY F+ + + D + A
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 200 DGRKLDGRRV 209
G+ L GR++
Sbjct: 78 GGQWLGGRQI 87
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V L + TE ++ FE +G I + L+ D +T + +GY FI + + + A +Q
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 200 DGRKLDGRRVLV 211
+G +L GR + V
Sbjct: 68 NGFELAGRPMRV 79
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM----HTRDMK 193
KT+F+ LS+++ E + + +G +K VR+V +T +G AF ++M + +
Sbjct: 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75
Query: 194 AAYKQAD--GRKLDGRRVLVDVERGR 217
AA +A+ G KLDGR++ VD+ R
Sbjct: 76 AASLEAEGGGLKLDGRQLKVDLAVTR 101
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
PN D T+ V LS +T E+ ++ F +G I R+ L DK T + +G+AFI +
Sbjct: 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 224
D A G D ++++VE + N P
Sbjct: 68 EDAARAIAGVSGFGYD--HLILNVEWAKPSTNSGP 100
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP-----RGYAFIEYMHTRDMKA 194
LF+ L++ TTE +K F G IK + K+ NK G+ F+EY +
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTI--SKKKNKAGVLLSMGFGFVEYKKPEQAQK 65
Query: 195 AYKQADGRKLDGRRVLVDVERGRTVPNWRP 224
A KQ G +DG ++ V + T P P
Sbjct: 66 ALKQLQGHTVDGHKLEVRISERATKPASGP 95
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
++ LF+ LS+ETTE ++ +E +G + ++ D + + RG+ F+ + ++ AA
Sbjct: 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 86
Query: 197 K----QADGRKLDGRRVLVDVERG 216
DGR ++ +R + E G
Sbjct: 87 AARPHSIDGRVVEPKRAVAREESG 110
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
++++V + Y +T ++ F S G I R+ ++ DK + P+GYA+IE+ + AA
Sbjct: 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96
Query: 198 QADGRKLDGRRVLV 211
D GR + V
Sbjct: 97 M-DETVFRGRTIKV 109
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
T++V+ L + T + + R F YG + +V ++ DK+T K +G AFI ++ + +
Sbjct: 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77
Query: 199 ADGRKLDGRRV 209
+ ++L GR +
Sbjct: 78 INNKQLFGRVI 88
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
TL+V LS+ TTE +I F G IK++ + DK G+ F+EY D + A +
Sbjct: 20 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKTACGFCFVEYYSRADAENAMRY 78
Query: 199 ADGRKLDGRRVLVDVERG 216
+G +LD R + D + G
Sbjct: 79 INGTRLDDRIIRTDWDAG 96
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P + +++ + Y+ TE +I + GP+ ++++ D +T + +GYAFIE+ +A
Sbjct: 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Query: 196 YKQADGRKLDGR 207
+ +G +L R
Sbjct: 61 VRNLNGYQLGSR 72
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P + +++ + Y+ TE +I + GP+ ++++ D +T + +GYAFIE+ +A
Sbjct: 2 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Query: 196 YKQADGRKLDGR 207
+ +G +L R
Sbjct: 62 VRNLNGYQLGSR 73
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L + ++K S+GP+K LV D T +GYAF EY+ A
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 200 DGRKLDGRRVLV 211
+G +L +++LV
Sbjct: 64 NGMQLGDKKLLV 75
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V L + +++R F YGP++ V + + P G+AF+E+ RD + A +
Sbjct: 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 57
Query: 200 DGRKLDGRRVLVDVERG 216
DG+ + G RV V++ G
Sbjct: 58 DGKVICGSRVRVELSTG 74
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P + +++ + Y+ TE +I + GP+ ++++ D +T + +GYAFIE+ +A
Sbjct: 3 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 62
Query: 196 YKQADGRKLDGR 207
+ +G +L R
Sbjct: 63 VRNLNGYQLGSR 74
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L+ E + + F +G I +++ D ET K RG+AF+E+ D AA
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67
Query: 198 QADGRKLDGRRVLVDVER 215
+ +L GR + V++ +
Sbjct: 68 NMNESELFGRTIRVNLAK 85
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L+ E + + F +G I +++ D ET K RG+AF+E+ D AA
Sbjct: 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 123
Query: 198 QADGRKLDGRRVLVDV 213
+ +L GR + V++
Sbjct: 124 NMNESELFGRTIRVNL 139
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L+ E + + F +G I +++ D ET K RG+AF+E+ D AA
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 198 QADGRKLDGRRVLVDVER 215
+ +L GR + V++ +
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L+ E + + F +G I +++ D ET K RG+AF+E+ D AA
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 72
Query: 198 QADGRKLDGRRVLVDVER 215
+ +L GR + V++ +
Sbjct: 73 NMNESELFGRTIRVNLAK 90
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
K +FV LS +T E KI+ F +G ++ + L D +TNK RG+ FI + +K
Sbjct: 2 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 57
>pdb|2DNG|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 4h
Length = 103
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194
+P T +V L + T + I F+ I+ VRLV DK+T+K +G+ ++E+ +K
Sbjct: 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKE 71
Query: 195 AYKQADGRKLDGRRVLVDVERGR 217
A DG L R + VD+ GR
Sbjct: 72 ALTY-DGALLGDRSLRVDIAEGR 93
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L+V L+ E + + F +G I +++ D ET K RG+AF+E+ D AA
Sbjct: 3 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 62
Query: 198 QADGRKLDGRRVLVDV 213
+ +L GR + V++
Sbjct: 63 NMNESELFGRTIRVNL 78
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
+FV LS TT +K FE +G + L+ DK TN+ RG+ F+ +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 48
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ- 198
+F+ L+++TTE ++ F YG + ++++ D T + RG+ F+ + + K
Sbjct: 6 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 65
Query: 199 --ADGRKLDGRRVL 210
DG+ +D +R +
Sbjct: 66 HILDGKVIDPKRAI 79
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
+FV + + + + F +G I +L+ DK+T + RG+ F+ Y
Sbjct: 90 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 136
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
+FV LS +T E KI+ F +G ++ + L D +TNK RG+ FI + +K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 55
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF++ L + T+ +++ +++G +K +RLVT++ KP+G A++EY + A +
Sbjct: 20 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKM 78
Query: 200 DG 201
DG
Sbjct: 79 DG 80
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 125 DPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFI 184
D NDP S L V L + T+ ++ F + GPI R+ D +T GYAF+
Sbjct: 5 DLMNDPRASN---TNLIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFV 61
Query: 185 EYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215
++ D + A K +G + +R+ V R
Sbjct: 62 DFTSEXDSQRAIKVLNGITVRNKRLKVSYAR 92
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
L+V L T+ ++ F YG I + ++ DK T +PRG AF+ Y
Sbjct: 103 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 149
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV LS E T + I F +G I R+V D T K +GY F+ + + D + A +Q
Sbjct: 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68
Query: 200 DGRKLDGRRV 209
G+ L GR++
Sbjct: 69 GGQWLGGRQI 78
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
T++V L + +E + F GP+ + D+ T + +GY F+E++ D A K
Sbjct: 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76
Query: 199 ADGRKLDGRRVLVD 212
D KL G+ + V+
Sbjct: 77 MDMIKLYGKPIRVN 90
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
D LFV L + TT+ ++ F YG + ++ DK TN+ RG+ F+++
Sbjct: 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 65
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 142 VARLSYETTESKIKREFESYGPIKRVRL-VTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200
+ RL+ T+ I F +YG IK + + V + +GYA++E+ + + + A K D
Sbjct: 9 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68
Query: 201 GRKLDGRRV 209
G ++DG+ +
Sbjct: 69 GGQIDGQEI 77
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
+P+ P +L+V L + TE+ + +F GPI +R+ D T + GYA++ +
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 189 TRDMKAAYKQADGRKLDGRRV 209
D + A + + G+ V
Sbjct: 67 PADAERALDTMNFDVIKGKPV 87
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP++ +F+ L + F ++G I ++V D+ N +GY F+ +
Sbjct: 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 152
Query: 189 TRDMKAAYKQADGRKLDGRRVLV 211
+ A ++ +G L+ R+V V
Sbjct: 153 QEAAERAIEKMNGMLLNDRKVFV 175
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
T+FV + E++I+ F YG +K V+++TD+ T +GY F+ + + D++
Sbjct: 12 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQ 65
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
+F+ LS++TT+ ++ F +G +K ++ D T + RG+ F+ +M
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 50
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
+P+ P +L+V L + TE+ + +F GPI +R+ D T + GYA++ +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 189 TRDMKAAYKQADGRKLDGRRV 209
D + A + + G+ V
Sbjct: 62 PADAERALDTMNFDVIKGKPV 82
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP++ +F+ L + F ++G I ++V D+ N +GY F+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 147
Query: 189 TRDMKAAYKQADGRKLDGRRVLV 211
+ A ++ +G L+ R+V V
Sbjct: 148 QEAAERAIEKMNGMLLNDRKVFV 170
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
SG+ +K +FV +S T +++ FE G + +V D YAF+ D
Sbjct: 6 SGNTWK-IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADA 56
Query: 193 KAAYKQADGRKLDGRRVLVDV 213
KAA Q +G+++ G+R+ V++
Sbjct: 57 KAAIAQLNGKEVKGKRINVEL 77
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
T+FV + E++I+ F YG +K V+++TD+ T +GY F+ + + D++
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQ 64
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V L + T+ ++ F + GPI R++ D +T GYAF+++ D + A K
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 200 DGRKLDGRRVLVDVER 215
+G + +R+ V R
Sbjct: 66 NGITVRNKRLKVSYAR 81
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
L+V L T+ ++ F YG I + ++ DK T +PRG AF+ Y
Sbjct: 92 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 138
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V L + T+ ++ F + GPI R++ D +T GYAF+++ D + A K
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 200 DGRKLDGRRVLVDVER 215
+G + +R+ V R
Sbjct: 66 NGITVRNKRLKVSYAR 81
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
++++V + Y T +++ F G + RV ++ DK + P+G+A+IE+ ++ +
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 65
Query: 198 QADGRKLDGRRVLVDVER 215
D GR++ V +R
Sbjct: 66 -LDESLFRGRQIKVIPKR 82
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
++++V + Y T +++ F G + RV ++ DK + P+G+A+IE+ ++ +
Sbjct: 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66
Query: 198 QADGRKLDGRRVLVDVER 215
D GR++ V +R
Sbjct: 67 -LDESLFRGRQIKVIPKR 83
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMK 193
T+FV + E++I+ F YG +K V+++TD+ T +GY F+ + + D++
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQ 64
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L E + + + F +G + ++ DK+TN + + F+ Y + +AA +
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87
Query: 200 DGRKLDGRRVLVDVERGR 217
+G ++ +R+ V ++R +
Sbjct: 88 NGFQIGMKRLKVQLKRSK 105
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
pdb|1RKJ|A Chain A, Solution Structure Of The Complex Formed By The Two N-
Terminal Rna-Binding Domains Of Nucleolin And A Pre-Rrna
Target
Length = 175
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+TL LS+ TE ++K FE +RLV+ + K +G A+IE+ D + +
Sbjct: 100 RTLLAKNLSFNITEDELKEVFEDA---LEIRLVS--QDGKSKGIAYIEFKSEADAEKNLE 154
Query: 198 QADGRKLDGRRV 209
+ G ++DGR V
Sbjct: 155 EKQGAEIDGRSV 166
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
+F+ LS++TT+ ++ F +G +K ++ D T + RG+ F+ +M
Sbjct: 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 75
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+TL L Y+ T+ ++K FE I RLV+ + K +G A+IE+ D + ++
Sbjct: 94 RTLLAKNLPYKVTQDELKEVFEDAAEI---RLVS--KDGKSKGIAYIEFKTEADAEKTFE 148
Query: 198 QADGRKLDGRRV 209
+ G ++DGR +
Sbjct: 149 EKQGTEIDGRSI 160
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L++ L Y+ T ++ F YGPI+++R+ ET RG A++ Y D K A
Sbjct: 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNAVD 65
Query: 198 QADGRKLDGRRVLV 211
G + R ++V
Sbjct: 66 HLSGFNVSNRYLVV 79
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+T+FV L E + F GP+ +V + D+E KP+ + F+ + H + A
Sbjct: 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIA 75
Query: 198 QADGRKLDGRRVLV 211
+G +L GR + V
Sbjct: 76 LLNGIRLYGRPINV 89
>pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 138 KTLFVARLSYETTESKIKREFESYGP--IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
K L+V L T+E I++EF + P ++RV+ K R YAF+ + + D A
Sbjct: 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEA 67
Query: 196 YKQADGRKLDGRRVLVDVER 215
K +G+ LDG + V + +
Sbjct: 68 MKALNGKVLDGSPIEVTLAK 87
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L++ L Y+ T ++ F YGPI+++R+ ET RG A++ Y D K A
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACD 75
Query: 198 QADGRKLDGRRVLV 211
G + R ++V
Sbjct: 76 HLSGFNVCNRYLVV 89
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ LS++TT+ +K F +G + L D T + RG+ F+ + + + Q
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 200 DGRKLDGRRVLVDVERG 216
+ KL+G+ ++D +R
Sbjct: 62 E-HKLNGK--VIDPKRA 75
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
L+V L T+ ++ F YG I + ++ DK T +PRG AF+ Y
Sbjct: 16 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 62
>pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2
Length = 96
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+TL LS+ TE ++K FE +RLV+ + K +G A+IE+ D + +
Sbjct: 17 RTLLAKNLSFNITEDELKEVFED---ALEIRLVS--QDGKSKGIAYIEFKSEADAEKNLE 71
Query: 198 QADGRKLDGRRV 209
+ G ++DGR V
Sbjct: 72 EKQGAEIDGRSV 83
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKE-TNKPRGYAFIEYMHTRDMKAAYKQ 198
+ V + ++ + +I+ F ++G +K VRL T RG+ F++++ +D K A+
Sbjct: 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77
Query: 199 -ADGRKLDGRRVLVD 212
L GRR++++
Sbjct: 78 LCHSTHLYGRRLVLE 92
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V+ L T+ ++++ F YG I R++ D+ T RG FI + + + A K
Sbjct: 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150
Query: 200 DGRKLDG 206
+G+K G
Sbjct: 151 NGQKPSG 157
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA---- 195
+FV + + E++++ F+ +G + V ++ D E +PRG+ FI + + + A
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 72
Query: 196 YKQADGRKLDGRR 208
+ G+K++ +R
Sbjct: 73 FHDIMGKKVEVKR 85
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L + L Y+ T ++ F YGPI+++R+ ET RG A++ Y D K A
Sbjct: 19 RILMIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACD 75
Query: 198 QADGRKLDGRRVLV 211
G + R ++V
Sbjct: 76 HLSGFNVCNRYLVV 89
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 40/76 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L E T++ + F +G + ++ DK+T+ + + F+ + + + A K
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102
Query: 200 DGRKLDGRRVLVDVER 215
+G ++ +R+ V +++
Sbjct: 103 NGFQVGTKRLKVQLKK 118
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 145 LSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRD 191
L TE I+ + +S+G R VRL+ +K + + RG+AF+E+ H +D
Sbjct: 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQD 56
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 35.4 bits (80), Expect = 0.064, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
L++ L TT+ + + + YG I + + DK TNK +GY F+++
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 54
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L VA L T+ + + +G ++R LV + T + +GY F EYM A
Sbjct: 96 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 155
Query: 200 DGRKLDGRRVLV 211
G+ L R + V
Sbjct: 156 LGKPLGPRTLYV 167
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L VA L T+ + + +G ++R LV + T + +GY F EYM A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157
Query: 200 DGRKLDGRRVLV 211
G+ L R + V
Sbjct: 158 LGKPLGPRTLYV 169
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L VA L T+ + + +G ++R LV + T + +GY F EYM A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157
Query: 200 DGRKLDGRRVLV 211
G+ L R + V
Sbjct: 158 LGKPLGPRTLYV 169
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L+ + ++ F+ + ++ D +T RGY F+ + D + A
Sbjct: 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63
Query: 200 DGRKLDGRRVLVD 212
G+ L+GR + ++
Sbjct: 64 QGQDLNGRPLRIN 76
>pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L V +S T +++ +FE YGP+ +V D YAF+ D A +
Sbjct: 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 64
Query: 200 DGRKLDGRRVLVDVERGR 217
D + G+R+ V + R
Sbjct: 65 DNTEFQGKRMHVQLSTSR 82
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+ L++ L Y+ T ++ F YGPI+++R+ ET RG A++ Y D K A
Sbjct: 13 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACD 69
Query: 198 QADGRKLDGRRVLV 211
G + R ++V
Sbjct: 70 HLSGFNVCNRYLVV 83
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
LF+ +S + TE+ I+ F S+G I+ R++ + RG AF+ + + A K
Sbjct: 98 LFIGXISKKCTENDIRVXFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAXAQTAIK 154
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 141 FVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP--RGYAFIEY 186
FV ++ +E ++ FE YG + + ++ D+ N P +G F+ +
Sbjct: 7 FVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
++ LFV L+ + +E ++R FE++G I+ ++ + N +G AF++Y + +AA
Sbjct: 15 HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAI 73
Query: 197 KQADGRK 203
G +
Sbjct: 74 NALHGSQ 80
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
LF+ +S + TE+ I+ F S+G I+ R++ + RG AF+ + TR M
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTF-TTRAM 160
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP--RGYAFIEY 186
+FV ++ +E ++ FE YG + + ++ D+ N P +G F+ +
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V+ L ++ ++++ F YG I R++ D+ T RG FI + + + A K
Sbjct: 93 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 152
Query: 200 DGRK 203
+G+K
Sbjct: 153 NGQK 156
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM 192
LF+ +S + TE+ I+ F S+G I+ R++ + RG AF+ + TR M
Sbjct: 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTF-TTRAM 148
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP--RGYAFIEY 186
+FV ++ +E ++ FE YG + + ++ D+ N P +G F+ +
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 130 PNVSGDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
P ++G L V+ L+ E T + F YG ++RV+++ +K+ N A ++
Sbjct: 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMAD 81
Query: 189 TRDMKAAYKQADGRKLDGRRVLVDVERGRTV 219
+ A +G KL G+ + + + + + V
Sbjct: 82 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFI---EYMHTRDMKAAY 196
L V L ++TTE +K F ++G + V++ D +T +G+ F+ EY + +
Sbjct: 18 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 77
Query: 197 KQADGRKLD 205
DGR D
Sbjct: 78 HMIDGRWCD 86
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRV-RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
+F+ L E E + F ++G I + +++ D +T +GYAFI + AA +
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67
Query: 199 ADGRKLDGRRVLV 211
+G+ L R + V
Sbjct: 68 MNGQYLCNRPITV 80
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH 188
DP++ +F+ L + F ++G I ++V D+ N +GY F+ +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 60
Query: 189 TRDMKAAYKQADGRKLDGRRVLVDVERGR 217
+ A ++ +G L+ R+V V + R
Sbjct: 61 QEAAERAIEKMNGMLLNDRKVFVGRFKSR 89
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
K LFV L+ TE +++ F +G ++RV+ + D YAFI + A +
Sbjct: 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAME 63
Query: 198 QADGRKLDGRRV 209
+ +G+ L+G +
Sbjct: 64 EMNGKDLEGENI 75
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
K L V+ + + + +++ F +G I V ++ ++ +K G+ F+ + ++ D A +
Sbjct: 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVTFENSADADRARE 73
Query: 198 QADGRKLDGRRVLVDVERGRTVPNWRP 224
+ G ++GR++ V+ R + N P
Sbjct: 74 KLHGTVVEGRKIEVNNATARVMTNSGP 100
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+V+ L ++ ++++ F YG I R++ D+ T RG FI + + + A K
Sbjct: 4 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 63
Query: 200 DGRK 203
+G+K
Sbjct: 64 NGQK 67
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 133 SGDPYK-----TLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPR 179
SGDP + ++V L+ T + F+ G +K + + DKET KP+
Sbjct: 6 SGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPK 65
Query: 180 GYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 224
G A + Y KAA + DG+ G ++ V + R + N P
Sbjct: 66 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSGP 110
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 133 SGDP-----YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187
SGDP K LFV L+ TE +++ F +G ++RV+ + D YAF+
Sbjct: 6 SGDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFV--- 54
Query: 188 HTRDMKAAYKQAD 200
H D AA K D
Sbjct: 55 HFEDRGAAVKAMD 67
>pdb|2LA6|A Chain A, Solution Nmr Structure Of Rrm Domain Of Rna-Binding
Protein Fus From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6430a
Length = 99
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTR 190
T+FV L T + F+ G IK + L TD+ET K +G A + +
Sbjct: 15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 74
Query: 191 DMKAAYKQADGRKLDGRRVLV 211
KAA DG++ G + V
Sbjct: 75 SAKAAIDWFDGKEFSGNPIKV 95
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV L + TE KR FE YG V + N+ RG+ FI + A +
Sbjct: 25 LFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLESRTLAEIAKAEL 78
Query: 200 DGRKLDGR 207
DG L R
Sbjct: 79 DGTILKSR 86
>pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198
T+FVA L Y+ K+K F G + R ++ DK+ K RG + + + + A
Sbjct: 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISM 75
Query: 199 ADGRKLDGRRVLVDVE-----RGRTVPNWRPR 225
+G+ L R + V ++ +G P RP+
Sbjct: 76 FNGQLLFDRPMHVKMDERALPKGDFFPPERPQ 107
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+T+F +L+ ++ F + G ++ VR+++D+ + + +G A++E+ + + A
Sbjct: 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85
Query: 198 QADGRKLDGRRVLVDVERG 216
G++L G ++V +
Sbjct: 86 LT-GQRLLGVPIIVQASQA 103
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+++ L T+ ++ F +G I R++ D+ T RG AFI + + + A
Sbjct: 91 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 150
Query: 200 DGRK 203
+G K
Sbjct: 151 NGHK 154
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
L+++ L T+ ++ F +G I R++ D+ T RG AFI + + + A
Sbjct: 91 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 150
Query: 200 DGRK 203
+G K
Sbjct: 151 NGHK 154
>pdb|2LCW|A Chain A, Solution Structure Of FusTLS RRM DOMAIN
Length = 116
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTR 190
T+FV L T + F+ G IK + L TD+ET K +G A + +
Sbjct: 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 68
Query: 191 DMKAAYKQADGRKLDGRRVLVDVERGR 217
KAA DG++ G + V R
Sbjct: 69 SAKAAIDWFDGKEFSGNPIKVSFATRR 95
>pdb|2LKZ|A Chain A, Solution Structure Of The Second Rrm Domain Of Rbm5
Length = 95
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 139 TLFVARLSYETTESKIKREFESYGP--IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196
T+ + ++ T I Y + +RL+ DK+T + RG+AF++ D
Sbjct: 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70
Query: 197 KQADG----RKLDGRRVLVDVER 215
+ K+DG+ + VD +
Sbjct: 71 QILQSLHPPLKIDGKTIGVDFAK 93
>pdb|1WF2|A Chain A, Solution Structure Of Rrm Domain In Hnrpc Protein
Length = 98
Score = 31.6 bits (70), Expect = 0.97, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 179 RGYAFIEYMHTRDMKAAYKQADGRKLDGR 207
+G+AF++Y++ R+ +AA DGR + G+
Sbjct: 50 KGFAFVQYVNERNARAAVAGEDGRMIAGQ 78
>pdb|2DIV|A Chain A, Solution Structure Of The Rrm Domain Of Trna
Selenocysteine Associated Protein
Length = 99
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 139 TLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
+L++ L E+ I R F + G + V+++ ++ T P GY F+E+ +
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 70
Query: 198 QADGRKLDG 206
+ +G+ L G
Sbjct: 71 KINGKPLPG 79
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L + F ++G I ++V D+ N +GY F+ + + A ++
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 65
Query: 200 DGRKLDGRRVLVDVERGR 217
+G L+ R+V V + R
Sbjct: 66 NGMLLNDRKVFVGRFKSR 83
>pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
pdb|3NS6|B Chain B, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
Length = 100
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV-----D 212
F G + + D+ T K +G+ F+E D K K G++LD + L D
Sbjct: 33 FSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92
Query: 213 VER 215
VER
Sbjct: 93 VER 95
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV + ES++ F +GP+K V+++ G+AF+E+ A ++
Sbjct: 7 LFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIEEV 58
Query: 200 DGRKL 204
G+
Sbjct: 59 HGKSF 63
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
K L V+ + + + +++ F +G I V ++ ++ +K G+ F+ + ++ D A +
Sbjct: 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVTFENSADADRARE 87
Query: 198 QADGRKLDGRRVLVDVERGRTV 219
+ G ++GR++ V+ R +
Sbjct: 88 KLHGTVVEGRKIEVNNATARVM 109
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
++V L + I+ F YG I+ + L ++ P +AF+E+ RD + A
Sbjct: 25 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 81
Query: 200 DGRKLDGRRVLVDVER 215
DG DG R+ V+ R
Sbjct: 82 DGYDYDGYRLRVEFPR 97
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 139 TLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197
L V+ L+ E T + F YG ++RV+++ +K+ N A ++ + A
Sbjct: 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMS 59
Query: 198 QADGRKLDGRRVLVDVERGRTV 219
+G KL G+ + + + + + V
Sbjct: 60 HLNGHKLHGKPIRITLSKHQNV 81
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP--RGYAFIEYMHTRDMKAAYK 197
+FV ++ +E ++ FE YG + + ++ D+ N P +G F+ + +TR KAA +
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF-YTR--KAALE 62
Query: 198 QADGRKLDGRRVL 210
+ L +VL
Sbjct: 63 AQNA--LHNMKVL 73
>pdb|3NS5|A Chain A, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
pdb|3NS5|B Chain B, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
Length = 91
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205
F G + + D+ T K +G+ F+E D K K G++LD
Sbjct: 33 FSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80
>pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic
Initiation Factor 3b
Length = 105
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 148 ETTESKIKREFESYGPIKRVRLVTD---KETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204
E ++ I + F +G ++ D +E K +GY F+EY A K ADG KL
Sbjct: 32 EKLKNVIHKIFSKFG-----KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86
Query: 205 D 205
D
Sbjct: 87 D 87
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDM-KAAYKQ 198
LFV L + TE ++++ FE YG V + DK G+ FI + TR + + A +
Sbjct: 25 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIR-LETRTLAEIAKVE 77
Query: 199 ADGRKLDGRRVLV 211
D L G+++ V
Sbjct: 78 LDNMPLRGKQLRV 90
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LFV + ES++ F +GP+K V+++ G+AF+E+ A ++
Sbjct: 34 LFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIEEV 85
Query: 200 DGRKL 204
G+
Sbjct: 86 HGKSF 90
>pdb|3S8S|A Chain A, Crystal Structure Of The Rrm Domain Of Human Setd1a
Length = 110
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P K + ARL+ E+ +K YG ++ V ++ T K G A + + TR K
Sbjct: 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKET 64
Query: 196 YK 197
K
Sbjct: 65 VK 66
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
LF+ ++ E +K FE +G I + ++ D+ T +G AF+ Y
Sbjct: 16 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 62
>pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
Length = 83
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P + LF+ L ET E + F + K VRLV ++ AF+E+ AA
Sbjct: 7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAA 61
Query: 196 YKQADGRKL 204
+ G K+
Sbjct: 62 KEALQGFKI 70
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L E TE +I+ FE YG + ++ + Y F+ + A +
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 62
Query: 200 DGRKLDGRRVLVDVERGRT 218
KL G + V+ + ++
Sbjct: 63 HHYKLHGVNINVEASKNKS 81
>pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
Length = 81
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 148 ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205
E ++ I + F +G I +E K +GY F+EY A K ADG KLD
Sbjct: 18 EKLKNVIHKIFSKFGKI--TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 133 SGDPYK-----TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186
SG P K LFV ++ E +K FE +G I + ++ D+ T +G AF+ Y
Sbjct: 6 SGVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTY 64
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK-Q 198
LFV L + TE ++++ FE YG V + DK G+ FI + TR + K +
Sbjct: 18 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIR-LETRTLAEIAKVE 70
Query: 199 ADGRKLDGRRVLV 211
D L G+++ V
Sbjct: 71 LDNMPLRGKQLRV 83
>pdb|1WF1|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
Np_057951
Length = 110
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 179 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213
+GYAF++Y + R +AA +GR L G+ + +++
Sbjct: 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,684,167
Number of Sequences: 62578
Number of extensions: 413486
Number of successful extensions: 1027
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 188
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)