BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011668
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/476 (58%), Positives = 331/476 (69%), Gaps = 60/476 (12%)
Query: 1 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKP
Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60
Query: 61 PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120
PPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIHKLRLEKG EKAAE+
Sbjct: 61 PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
LKKYDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+G
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRV-GGE 239
YAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPRRLGGGLGT+RV GGE
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240
Query: 240 EVNQRYSGREQEPSRGPSRSAEP-RIREDRHGDRDRERSRERGRDREREREKSLELSHDR 298
E+ EQ+P S+S EP R RE +RE+SRE+G++RER R ELSH++
Sbjct: 241 EIVG-----EQQPQGRTSQSEEPSRPRE------EREKSREKGKERERSR----ELSHEQ 285
Query: 299 PRDRDH---RDDRHHRDRDRTRDRERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDR 355
PR+R R+D+HHRDRD+ R DRD R
Sbjct: 286 PRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRD------RRDRDRGRDRT 339
Query: 356 DKERDRDRTRERERDRDYEVGDPDRDRGYSRDRDSDYDRIDSKHERDRHGERDYDPTDQE 415
++ DRDR+R++ERD + + G SR+RD++Y GE E
Sbjct: 340 SRDHDRDRSRKKERDYEGGEYE-HEGGGRSRERDAEY-----------RGE-------PE 380
Query: 416 DDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKE 471
+ RG+Y+ + GD DRY+ RYD+MEEDD+RY+R S+ E
Sbjct: 381 ETRGYYEDDQ--------GDTDRYSH-------RYDKMEEDDFRYEREYKRSKRSE 421
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/212 (58%), Positives = 151/212 (71%), Gaps = 8/212 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 248
RTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 152/213 (71%), Gaps = 8/213 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGRE 249
RTV WRPRRLGGGLG TR GG +VN R+SGR+
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 152/213 (71%), Gaps = 8/213 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGRE 249
RTV WRPRRLGGGLG TR GG +VN R+SGR+
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 150/212 (70%), Gaps = 8/212 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPPP-----EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ + ELK +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 217 RTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 248
RTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 150/215 (69%), Gaps = 11/215 (5%)
Query: 42 LTANLLKLFEPRAPLEYKPPP-----EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ + ELK +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRVRLVTDK---ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213
EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 214 ERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 248
ERGRTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 216
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 131/188 (69%), Gaps = 10/188 (5%)
Query: 71 TGMAQFVSHFAEPGDPLYAPPVEK--AETPVERRARIHKLRLEKGAEKAAEELKKYDPHN 128
TG+ ++S F +P + P +K E E+R + KL++ + E+ ++ LK +DP++
Sbjct: 33 TGLRDYLSIFTDPSN---EEPFKKEHIENLEEKREKKRKLKISENDERISKSLKAWDPYS 89
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP---RGYAFIE 185
+ +GDPYKT+FV+R+SY+TT+ K++ EF +GPIK + LV K++N P GYAFIE
Sbjct: 90 NSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLV--KDSNNPEKHTGYAFIE 147
Query: 186 YMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRY 245
+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR+ GGGLG TR GG +VNQ +
Sbjct: 148 FERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTF 207
Query: 246 SGREQEPS 253
SGRE S
Sbjct: 208 SGREMSES 215
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 143/210 (68%), Gaps = 7/210 (3%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L NLL LF R P+ + PP P ++K G+A+F++ F +P D P + ET
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD---TPLPKTVET 61
Query: 98 PVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ESK++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217
FE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 218 TVPNWRPRRLGGGLGTTRVGGEEVNQRYSG 247
TV W PRRLGGGLG TR GG +VN ++SG
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSG 211
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 125/190 (65%), Gaps = 9/190 (4%)
Query: 42 LTANLLKLFEPRAPLEYK----PPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L A LL LF PR PL Y PPEKR P ++G+A+++ +A+ D Y P E+
Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TES 59
Query: 98 PVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
E+R R+ + ++ E+ +K +DP +D +V GDPYKT+F++RLSY+T ES I+RE
Sbjct: 60 LEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIERE 119
Query: 158 FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217
F YGPI+R+R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGR
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGR 179
Query: 218 TVPNWRPRRL 227
TV W PR+L
Sbjct: 180 TVKGWLPRKL 189
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 48 KLFEPRAPLEYK-----PPPEKRKCPPLTGMAQFVS----HFAEPGDPLYAPPVEKAE-T 97
+LF+PR PL YK P +++ P +TG+A +S H+ E E E +
Sbjct: 14 RLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYME----------EFPEGS 63
Query: 98 PVERRARIHKLRLEK--GAEKAAEELKKYDPHNDPNVS-GDPYKTLFVARLSYETTESKI 154
P R ++L K A+ L+ ++P+ DP++ DPY+T+F+ RL Y+ E ++
Sbjct: 64 PNNHLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIEL 123
Query: 155 KREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD---GRKLDGRRVLV 211
++ F +G I+++R+V DK T K +GYAFI + K A+K+ G ++ R +V
Sbjct: 124 QKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIV 183
Query: 212 DVERGRTVPNWRP 224
D+ERGRTV ++P
Sbjct: 184 DIERGRTVKYFKP 196
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V GDP TLFVARL+ +TTE K++ F +G I+R+RLV D T +
Sbjct: 35 LARYKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKR 92
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY R +K A++ A+ LD +LVDVE+ RT+P WRPRRLGGG G + G+
Sbjct: 93 YAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQ- 151
Query: 241 VNQRYSGREQEPSRGP 256
R+ GR++ P R P
Sbjct: 152 --LRFGGRDR-PFRKP 164
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 28/208 (13%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +G
Sbjct: 36 LARYVPNK--GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY R + AY+ ADG +D + VD E RT+ W PRRLGGGLG + G+
Sbjct: 94 YAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQ- 152
Query: 241 VNQRYSGREQEPSRGPSRSAEPRIRED-----------------RHGD-RDRERSRERGR 282
R+ GR++ P R P P ++ D RH D R R+R +RGR
Sbjct: 153 --LRFGGRDR-PFRKPINL--PVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGR 207
Query: 283 D-REREREKS-LELSHDRPRDRDHRDDR 308
+ R +ERE + + +D R+RD RDDR
Sbjct: 208 EKRWQEREPTRVWPDNDWERERDFRDDR 235
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 110/207 (53%), Gaps = 27/207 (13%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +G
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY R + AY+ ADG +D + VD E RT+ W PRRLGGGLG + G+
Sbjct: 94 YAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQ- 152
Query: 241 VNQRYSGREQEPSRGPSRSAEPRIREDR-----------------HGDRDRERSRERGRD 283
R+ GR++ P R P P ++ D+ H D +RGR+
Sbjct: 153 --LRFGGRDR-PFRKPINL--PVVKNDQFREGKRERRERSRSRERHWDSRMRDHHDRGRE 207
Query: 284 -REREREKSLELSH-DRPRDRDHRDDR 308
R +ERE + D R+RD RDDR
Sbjct: 208 KRWQEREPARAWPEGDWERERDFRDDR 234
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +G
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY R + AY+ ADG +D + VD E RT+ W PRRLGGGLG + G+
Sbjct: 94 YAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQ- 152
Query: 241 VNQRYSGRE---QEPSRGPSRSAEP 262
R+ GR+ ++P P EP
Sbjct: 153 --LRFGGRDRPFRKPINLPVVKNEP 175
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+R+RLV D T +G
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY R + AY+ ADG +D + VD E RT+ W PRRLGGGLG + G+
Sbjct: 94 YAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQ- 152
Query: 241 VNQRYSGRE---QEPSRGPSRSAEP 262
R+ GR+ ++P P EP
Sbjct: 153 --LRFGGRDRPFRKPINLPVVKNEP 175
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRG 180
L +Y P+ V+GDP+ TLFV+RLS +TTE K+K F YG IKR+RLV D T +G
Sbjct: 36 LSRYVPNK--GVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKG 93
Query: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
YAFIEY + A++ A+ +D R V VD E R + W PRR GGG G + G+
Sbjct: 94 YAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNLKGWIPRRFGGGFGGKKESGQ- 152
Query: 241 VNQRYSGREQEPSRGP 256
R+ GR++ P R P
Sbjct: 153 --LRFGGRDR-PFRKP 165
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E ++ EF YG I V L+ D+ETNK RG+AF+ + D KAA +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 200 DGRKLDGRRVLV 211
+G+ LDG+ + V
Sbjct: 70 NGKSLDGKAIKV 81
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AFI + D KAA +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 200 DGRKLDGRRVLV 211
+G+ LDG+ + V
Sbjct: 70 NGKSLDGKAIKV 81
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 77/108 (71%), Gaps = 5/108 (4%)
Query: 271 DRDRERSRERGRDRE----REREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERDRG 326
D++ E+ RE+ RD+E RE+++ EL R +D+D ++ +++DR + RE++RD+
Sbjct: 795 DKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKG-QEKDRDKVREKDRDKV 853
Query: 327 RERDRDRTRDRDRGRDRGRDHERDREKDRDKERDRDRTRERERDRDYE 374
R++DRD+ R++DR + R +D ++ REKDR+K R+RDR + RE+DRD E
Sbjct: 854 RDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKE 901
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 86/134 (64%), Gaps = 14/134 (10%)
Query: 267 DRHGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDDRH-----HRDRDRTRDRER 321
DR ++++ R +E+ + R+++R K LE ++ +D++ DR ++ R +D+++
Sbjct: 737 DRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDK 796
Query: 322 ERDRGRERDRDRTRDRDRGRDRGRDHERDREKDRDK------ERDRDRTRERERDRDYEV 375
E ++GRE+DRD+ ++ R +D+ ++ E+ REKD+DK E+DRD+ RE++RD+ V
Sbjct: 797 ELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDK---V 853
Query: 376 GDPDRDRGYSRDRD 389
D DRD+ +DRD
Sbjct: 854 RDKDRDKVREKDRD 867
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 85/141 (60%), Gaps = 24/141 (17%)
Query: 271 DRDRERSRERGRDR--EREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERDRGRE 328
+RD+E+ +E+ D+ E+ REK LE D+ R +D +D+++ RD+E E+ R +E
Sbjct: 679 NRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKD-----QEKDQEKGRDKEVEKGRYKE 733
Query: 329 RDRDRTRDRDRGRD----------RGRDHERDREKDRDKERDRDRTRERERDRDYEVG-- 376
R +DR +++++ RD R +D E+ REKD+DKE ++D RE+ +D++ E G
Sbjct: 734 RVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKD--REKNQDKELEKGRE 791
Query: 377 ---DPDRDRGYSRDRDSDYDR 394
D + ++G +DRD + ++
Sbjct: 792 KDQDKELEKGREKDRDKEMEK 812
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 24/102 (23%)
Query: 263 RIRE---DRHGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDR 319
++RE D+ D+DR++ RE+ RD+ RE +DRD R++DR + R
Sbjct: 844 KVREKDRDKVRDKDRDKVREKDRDKVRE------------KDRDKL-----REKDREKIR 886
Query: 320 ERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDRDKERDR 361
ER+RD+GRE+D RD+++ + R +D E++R KDRDKER++
Sbjct: 887 ERDRDKGREKD----RDKEQVKTREKDQEKERLKDRDKEREK 924
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 285 EREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERDRGRERDRDRTRDRDRGRDRG 344
ER REK + S R R + R +RD+ +++E+ D+G E+ R++ ++ R ++R
Sbjct: 653 ERHREKDSDSSKGR-RSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERV 711
Query: 345 RDHERDREKDRDKERDRDRTRERERDRDYE---VGDPDRDRGYSRDRDSDYDRI-----D 396
+D E+D+EK RDKE ++ R +ER +DR E V D ++ +G + R D ++ D
Sbjct: 712 KDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQD 771
Query: 397 SKHERDRHGERD 408
+ E+DR +D
Sbjct: 772 KELEKDREKNQD 783
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 26/112 (23%)
Query: 263 RIRE---DRHGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDR 319
++RE D+ ++DRE+ RER RD+ RE +DRD+ + +
Sbjct: 868 KVREKDRDKLREKDREKIRERDRDKGRE-----------------------KDRDKEQVK 904
Query: 320 ERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDRDKERDRDRTRERERDR 371
RE+D+ +ER +DR ++R++ RD+GRD +RD+EK R+KE D+ +R R
Sbjct: 905 TREKDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKELTEDKQAPEQRSR 956
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET+E ++ F +G I V L+ D+ETNK RG+AF+ Y + D K A ++
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 200 DGRKLDGRRVLVD 212
+G+ LDG+ + V+
Sbjct: 70 NGKPLDGKPIKVE 82
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E ++ F YG I V L+ D+ETNK RG+AF+ + D K A +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 200 DGRKLDGRRVLVD 212
+G+ LDG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E ++ F YG + V L+ D+ETNK RG+AF+ + D K A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 200 DGRKLDGRRVLVD 212
+G+ LDG+ + V+
Sbjct: 70 NGKALDGKPIKVE 82
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G+ L G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 98 NGIKIKGRTIRVD 110
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
LF+ L+ ET E +K F +GPI V L+ D+ T+K RG+AFI + + D K A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 200 DGRKLDGRRVLVD 212
+G L G+ + V+
Sbjct: 69 NGTSLHGKAIKVE 81
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 98 NGIKIKGRTIRVD 110
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+F+ L YE TE I F YG I + LV DK+T K +G+ F+ Y R A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR + VD
Sbjct: 98 NGIKIKGRTIRVD 110
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 101/264 (38%), Gaps = 51/264 (19%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + + F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLHLIFS 269
Query: 160 SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER--GR 217
+G I ++ DK T YAFIE+ + +D + AY + G +D R+ VD + +
Sbjct: 270 RFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSK 329
Query: 218 TVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGPSRSAEPRIREDRHGDRDRERS 277
+WR N S R + R G E+
Sbjct: 330 LSESWR------------------NATISKRSGQ-------------RGGFGGVASLEKK 358
Query: 278 RE-RGRDREREREKSLELSHDR----PRDRDH-RDDRHHRDRDRTRDRERERDRGRERDR 331
R+ R D RE+E L D+ PR R + R + +RDR R RD R+ R
Sbjct: 359 RQYRASDNAREKENDYTLVFDKGDKAPRRRSYSRSPQRSSNRDRRASRSPRRDSYRDPYR 418
Query: 332 DRTRDRDRGRDRGRDHERDREKDR 355
R DR R R RD+++ R
Sbjct: 419 RRPGDRSHSRSPARGEYRDKDRGR 442
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV + Y+ TE + F YG + V LV DK T K +G+AF+ Y R A
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 200 DGRKLDGRRVLVD 212
+G K+ GR V VD
Sbjct: 98 NGAKVLGRIVRVD 110
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 105 IHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
+ +++ EK A+ A L+ D ++ P LFV +L+ TT+ ++ F +GPI
Sbjct: 208 VEEIKAEKEAKTQAILLEMVGDLPDADIKP-PENVLFVCKLNPVTTDEDLEIIFSRFGPI 266
Query: 165 KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216
+ ++ D +T + YAFIE+ D + A+ + D +D RR+ VD +
Sbjct: 267 RSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G TL V L+Y T+ ++R FE YG + V + + T PRG+AF+ +
Sbjct: 8 PDVDG--MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A DG +LDGR + V V R
Sbjct: 66 RDAQDAEAAMDGAELDGRELRVQVAR 91
>sp|Q9CXG3|PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4
PE=2 SV=2
Length = 492
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 105 IHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
+ +++ EK A+ A L+ D ++ P LFV +L+ TT+ ++ F +GPI
Sbjct: 208 VEEIKAEKEAKTQAILLEMVGDLPDADIK-PPENVLFVCKLNPVTTDEDLEIIFSRFGPI 266
Query: 165 KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215
+ ++ D +T + YAFIE+ D + A+ + D +D RR+ VD +
Sbjct: 267 RSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQ 317
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+++G +L + LSY+TT + ++R FE YG I V + DK + + +G+ F+ +
Sbjct: 13 PDING--LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A + DG+ +DGR + V + +
Sbjct: 71 RDAEHALDRTDGKLVDGRELRVTLAK 96
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN 221
D + + GR++ + +G R PN
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPN 94
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195
P +LFV ++ +T ++REF YGPI V + D T +PRG+A++++ RD + A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 196 YKQADGRKLDGRRVLVDVERG-RTVPN 221
D + + GR++ + +G R PN
Sbjct: 68 LHNLDRKWICGRQIEIQFAQGDRKTPN 94
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 101 RRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFES 160
R A+ H L LE + E+K P LFV +L+ T + ++ F
Sbjct: 217 REAKAHALTLEMIGDLPFAEVKP------------PENVLFVCKLNPVTRDEDLEMIFSR 264
Query: 161 YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER--GRT 218
+G I ++ D++T YAF+E+ + D + AY + +D RR+ VD + +
Sbjct: 265 FGLIHSCEIIRDRQTGDSLSYAFVEFENKEDAEEAYFKMQSVLIDDRRIHVDFSQSVSKL 324
Query: 219 VPNWRPRRLGGG 230
+W +R G G
Sbjct: 325 HKDWIAKRTGAG 336
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TE++I+ ES+GP++ LV D+ET +GYAF Y A
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 200 DGRKLDGRRVLV 211
+G K+ + + V
Sbjct: 421 NGIKMGDKTLTV 432
>sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cyp6 PE=3 SV=1
Length = 461
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + ++ F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLELIFS 269
Query: 160 SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER--GR 217
+G I ++ DK T YAFIE+ +D + AY + G +D R+ VD + +
Sbjct: 270 RFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSK 329
Query: 218 TVPNWRPRRLG------GGLGTTRVGGEEVNQRYSGRE 249
+WR + GG G V G E ++Y E
Sbjct: 330 LSESWRDATVKKRSAQRGGFGG--VAGLEKKRQYRASE 365
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 29/235 (12%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + ++ F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLQLIFS 269
Query: 160 SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG--R 217
+GPI ++ DK T YAFIE+ + +D + AY + G +D R+ VD + +
Sbjct: 270 RFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSK 329
Query: 218 TVPNWRPRRLG-----GGLGTTRVGGEEVNQRY----SGREQEPSRGPSRSAEPRIREDR 268
+WR + GG G V E ++Y + REQ+ E R R
Sbjct: 330 LSESWRNATISKRSQRGGFGG--VAELEKKRQYRATDNVREQDAYGMVFDKGEARRRPVS 387
Query: 269 HGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERER 323
R + R R ++ L R R RD D R R D RDR RER
Sbjct: 388 RERRYSRSPKRSSRRDSRSPKRGLH----RNRYRDRSDSRSPRREDSYRDRNRER 438
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TE++++ ES+GP++ LV D+ET +GYAF Y A
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 388
Query: 200 DGRKLDGRRVLV 211
+G K+ + + V
Sbjct: 389 NGIKMGDKTLTV 400
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TE +I+ ES+GP++ LV D+ET +GYAF Y A
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 200 DGRKLDGRRVLV 211
+G K+ + + V
Sbjct: 437 NGIKMGDKTLTV 448
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A DG LDGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TE++++ ES+GP++ LV D+ET +GYAF Y A
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 200 DGRKLDGRRVLV 211
+G K+ + + V
Sbjct: 420 NGIKMGDKTLTV 431
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TE++++ E++GP++ +V DKET +GYAF Y A
Sbjct: 394 IFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAAL 453
Query: 200 DGRKLDGRRVLV 211
+G +L R + V
Sbjct: 454 NGIQLGDRTLTV 465
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199
+FV L Y TES+++ ES+G +K LV D+ET +GYAF Y A
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 200 DGRKLDGRRVLV 211
+G K+ + + V
Sbjct: 421 NGIKMGDKTLTV 432
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189
P+V G +L V L+Y T+ ++R FE YG + V + D+ T + RG+AF+ +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 190 RDMKAAYKQADGRKLDGRRVLVDVER 215
RD + A DG LDGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,022,242
Number of Sequences: 539616
Number of extensions: 10093857
Number of successful extensions: 111475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 1515
Number of HSP's that attempted gapping in prelim test: 38910
Number of HSP's gapped (non-prelim): 21800
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)