Query 011668
Match_columns 480
No_of_seqs 523 out of 3299
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0113 U1 small nuclear ribon 100.0 8.5E-38 1.8E-42 289.7 25.3 194 40-236 3-200 (335)
2 PLN03134 glycine-rich RNA-bind 99.8 4.3E-19 9.4E-24 156.0 14.5 84 136-219 33-116 (144)
3 KOG0107 Alternative splicing f 99.7 3.2E-17 6.9E-22 142.2 15.0 78 137-219 10-87 (195)
4 KOG0415 Predicted peptidyl pro 99.7 2E-17 4.3E-22 157.3 11.4 117 107-224 210-326 (479)
5 KOG4207 Predicted splicing fac 99.7 1.5E-16 3.3E-21 141.2 15.5 82 136-217 12-93 (256)
6 KOG0121 Nuclear cap-binding pr 99.7 3.4E-17 7.3E-22 134.6 8.3 81 136-216 35-115 (153)
7 TIGR01659 sex-lethal sex-letha 99.7 3.9E-16 8.4E-21 156.4 11.2 83 136-218 192-276 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.6E-15 3.6E-20 153.9 12.4 83 136-218 268-350 (352)
9 PF00076 RRM_1: RNA recognitio 99.6 2.7E-15 5.8E-20 114.9 8.8 70 140-210 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.6 2.4E-15 5.1E-20 150.8 10.6 83 134-216 104-186 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 3.8E-15 8.1E-20 151.3 10.8 82 136-217 2-83 (352)
12 KOG0122 Translation initiation 99.6 5.8E-15 1.3E-19 134.6 9.5 83 135-217 187-269 (270)
13 KOG0126 Predicted RNA-binding 99.6 2.8E-16 6.1E-21 136.8 0.6 85 136-220 34-118 (219)
14 KOG0149 Predicted RNA-binding 99.6 3.7E-15 8E-20 135.5 7.1 80 136-216 11-90 (247)
15 KOG0105 Alternative splicing f 99.6 1.4E-14 2.9E-19 126.7 10.3 80 136-218 5-84 (241)
16 PLN03120 nucleic acid binding 99.5 3.7E-14 8E-19 133.5 10.6 77 137-217 4-80 (260)
17 TIGR01645 half-pint poly-U bin 99.5 4.5E-14 9.9E-19 149.1 11.8 88 136-223 203-290 (612)
18 TIGR01645 half-pint poly-U bin 99.5 3.9E-14 8.4E-19 149.6 11.0 80 136-215 106-185 (612)
19 PF14259 RRM_6: RNA recognitio 99.5 5.9E-14 1.3E-18 107.8 8.6 70 140-210 1-70 (70)
20 KOG0130 RNA-binding protein RB 99.5 2.9E-14 6.2E-19 118.4 7.2 83 136-218 71-153 (170)
21 KOG0125 Ataxin 2-binding prote 99.5 4.8E-14 1E-18 133.6 9.0 82 134-217 93-174 (376)
22 KOG0131 Splicing factor 3b, su 99.5 4.8E-14 1E-18 123.2 6.5 82 134-215 6-87 (203)
23 PLN03213 repressor of silencin 99.5 1.1E-13 2.4E-18 137.0 9.7 77 136-216 9-87 (759)
24 KOG0148 Apoptosis-promoting RN 99.5 9.3E-14 2E-18 128.4 8.1 83 136-218 61-143 (321)
25 KOG0146 RNA-binding protein ET 99.5 1E-13 2.2E-18 127.7 8.0 87 132-218 280-366 (371)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.5 2.2E-13 4.7E-18 145.3 12.0 82 135-216 293-374 (509)
27 KOG0111 Cyclophilin-type pepti 99.5 5.6E-14 1.2E-18 125.9 4.9 84 136-219 9-92 (298)
28 TIGR01622 SF-CC1 splicing fact 99.4 3.3E-13 7.2E-18 142.0 10.7 80 137-216 186-265 (457)
29 PLN03121 nucleic acid binding 99.4 5E-13 1.1E-17 123.8 10.1 76 137-216 5-80 (243)
30 smart00362 RRM_2 RNA recogniti 99.4 8.1E-13 1.7E-17 100.7 9.4 72 139-212 1-72 (72)
31 KOG0148 Apoptosis-promoting RN 99.4 7.1E-13 1.5E-17 122.6 10.5 78 134-217 161-238 (321)
32 TIGR01648 hnRNP-R-Q heterogene 99.4 7.3E-13 1.6E-17 139.8 10.9 80 135-215 56-136 (578)
33 TIGR01628 PABP-1234 polyadenyl 99.4 7.3E-13 1.6E-17 142.9 10.5 78 139-216 2-79 (562)
34 TIGR01622 SF-CC1 splicing fact 99.4 8.5E-13 1.8E-17 138.9 10.6 80 136-216 88-167 (457)
35 smart00360 RRM RNA recognition 99.4 1.6E-12 3.4E-17 98.7 8.5 71 142-212 1-71 (71)
36 KOG0114 Predicted RNA-binding 99.4 2.3E-12 5.1E-17 102.3 9.4 78 136-216 17-94 (124)
37 TIGR01628 PABP-1234 polyadenyl 99.4 1.5E-12 3.3E-17 140.4 10.6 82 135-217 283-364 (562)
38 KOG0117 Heterogeneous nuclear 99.4 2.4E-12 5.2E-17 126.7 10.6 82 135-216 81-163 (506)
39 KOG0108 mRNA cleavage and poly 99.4 1E-12 2.2E-17 133.6 8.3 81 138-218 19-99 (435)
40 TIGR01648 hnRNP-R-Q heterogene 99.4 3.3E-12 7.2E-17 134.8 11.8 77 136-220 232-310 (578)
41 COG0724 RNA-binding proteins ( 99.4 2.9E-12 6.2E-17 124.1 10.0 79 137-215 115-193 (306)
42 cd00590 RRM RRM (RNA recogniti 99.3 5.8E-12 1.3E-16 96.4 9.6 74 139-213 1-74 (74)
43 KOG0145 RNA-binding protein EL 99.3 2.5E-12 5.4E-17 118.2 8.5 82 136-217 40-121 (360)
44 KOG0145 RNA-binding protein EL 99.3 4.5E-12 9.7E-17 116.5 9.7 81 137-217 278-358 (360)
45 KOG0127 Nucleolar protein fibr 99.3 7E-12 1.5E-16 126.0 9.5 82 136-218 116-197 (678)
46 KOG0127 Nucleolar protein fibr 99.3 7.3E-12 1.6E-16 125.9 8.8 81 137-217 292-378 (678)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.2E-11 2.5E-16 130.8 10.6 79 135-218 273-352 (481)
48 KOG0124 Polypyrimidine tract-b 99.3 7.7E-12 1.7E-16 119.9 7.5 77 137-213 113-189 (544)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.8E-11 3.8E-16 129.4 10.8 76 136-217 1-78 (481)
50 KOG4676 Splicing factor, argin 99.3 7.5E-12 1.6E-16 121.1 6.8 79 138-216 8-89 (479)
51 KOG0109 RNA-binding protein LA 99.2 1.2E-11 2.6E-16 115.6 6.9 72 138-217 3-74 (346)
52 KOG0147 Transcriptional coacti 99.2 1.4E-11 3E-16 124.6 7.4 81 136-216 277-357 (549)
53 smart00361 RRM_1 RNA recogniti 99.2 4E-11 8.7E-16 92.1 7.9 62 151-212 2-70 (70)
54 KOG0144 RNA-binding protein CU 99.2 2.7E-11 5.8E-16 118.8 8.3 82 136-217 33-117 (510)
55 KOG0117 Heterogeneous nuclear 99.2 2.2E-11 4.9E-16 119.9 7.8 74 136-217 258-331 (506)
56 PF13893 RRM_5: RNA recognitio 99.2 6E-11 1.3E-15 86.9 8.1 56 154-214 1-56 (56)
57 KOG0144 RNA-binding protein CU 99.2 1.1E-10 2.5E-15 114.5 12.2 89 130-218 417-505 (510)
58 KOG0131 Splicing factor 3b, su 99.2 1.9E-11 4.1E-16 107.1 5.1 85 134-218 93-178 (203)
59 KOG4676 Splicing factor, argin 99.2 1.2E-12 2.7E-17 126.5 -3.6 64 137-205 151-214 (479)
60 KOG4208 Nucleolar RNA-binding 99.1 1.3E-10 2.7E-15 104.2 7.4 82 136-217 48-130 (214)
61 KOG4212 RNA-binding protein hn 99.1 2.1E-10 4.6E-15 112.5 8.7 78 138-216 45-123 (608)
62 KOG0109 RNA-binding protein LA 99.1 1.6E-10 3.4E-15 108.3 6.8 76 135-218 76-151 (346)
63 KOG4661 Hsp27-ERE-TATA-binding 99.0 5.1E-10 1.1E-14 113.0 8.9 83 136-218 404-486 (940)
64 KOG0132 RNA polymerase II C-te 99.0 3E-09 6.4E-14 111.4 13.1 79 135-219 419-497 (894)
65 KOG0116 RasGAP SH3 binding pro 99.0 2.5E-09 5.5E-14 108.4 12.0 82 137-219 288-369 (419)
66 KOG4206 Spliceosomal protein s 99.0 1.3E-09 2.7E-14 99.5 7.8 80 136-218 8-91 (221)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.8E-09 3.9E-14 115.2 10.1 82 135-216 407-501 (509)
68 KOG0123 Polyadenylate-binding 98.9 2.4E-09 5.2E-14 108.3 8.0 76 139-217 78-153 (369)
69 KOG4205 RNA-binding protein mu 98.9 1E-09 2.2E-14 107.3 4.7 82 136-218 5-86 (311)
70 PF12220 U1snRNP70_N: U1 small 98.9 7.2E-09 1.6E-13 84.0 8.7 88 40-130 3-94 (94)
71 KOG4212 RNA-binding protein hn 98.9 2.7E-09 5.9E-14 104.9 6.7 75 135-214 534-608 (608)
72 KOG0226 RNA-binding proteins [ 98.9 5.3E-09 1.2E-13 96.4 7.4 79 137-215 190-268 (290)
73 KOG0124 Polypyrimidine tract-b 98.9 6.6E-09 1.4E-13 100.0 8.3 80 137-216 210-289 (544)
74 KOG4205 RNA-binding protein mu 98.8 6.2E-09 1.4E-13 101.8 7.5 83 136-219 96-178 (311)
75 KOG0153 Predicted RNA-binding 98.8 1.7E-08 3.8E-13 97.0 9.9 75 136-216 227-302 (377)
76 KOG0110 RNA-binding protein (R 98.8 2.4E-09 5.1E-14 111.5 4.3 81 137-217 613-693 (725)
77 KOG4209 Splicing factor RNPS1, 98.8 8.4E-09 1.8E-13 97.3 7.5 81 136-217 100-180 (231)
78 KOG0110 RNA-binding protein (R 98.8 8.3E-09 1.8E-13 107.5 7.8 77 139-215 517-596 (725)
79 KOG1548 Transcription elongati 98.8 1.7E-08 3.7E-13 97.0 9.3 80 136-216 133-220 (382)
80 KOG4454 RNA binding protein (R 98.8 2.2E-09 4.9E-14 96.8 2.7 78 137-216 9-86 (267)
81 KOG0123 Polyadenylate-binding 98.8 1.4E-08 3.1E-13 102.7 7.8 74 138-217 2-75 (369)
82 KOG0106 Alternative splicing f 98.8 9.1E-09 2E-13 94.8 5.4 71 138-216 2-72 (216)
83 KOG0146 RNA-binding protein ET 98.8 1.4E-08 3E-13 94.2 6.5 81 136-217 18-101 (371)
84 KOG1457 RNA binding protein (c 98.7 6.7E-08 1.4E-12 87.6 10.4 83 136-218 33-119 (284)
85 KOG0533 RRM motif-containing p 98.7 3.3E-08 7.2E-13 93.1 8.8 80 137-217 83-162 (243)
86 KOG0151 Predicted splicing reg 98.7 4.1E-08 9E-13 102.0 7.2 82 136-217 173-257 (877)
87 KOG0120 Splicing factor U2AF, 98.6 4.6E-08 9.9E-13 100.5 6.6 94 123-216 275-368 (500)
88 KOG2416 Acinus (induces apopto 98.6 1.1E-07 2.4E-12 97.1 7.1 80 133-218 440-523 (718)
89 KOG1995 Conserved Zn-finger pr 98.5 1.3E-07 2.8E-12 91.9 6.8 83 136-218 65-155 (351)
90 PF04059 RRM_2: RNA recognitio 98.5 3.9E-07 8.4E-12 73.8 8.4 78 138-215 2-85 (97)
91 KOG4660 Protein Mei2, essentia 98.5 6E-08 1.3E-12 98.9 4.5 75 131-210 69-143 (549)
92 KOG4211 Splicing factor hnRNP- 98.2 3.3E-06 7.2E-11 85.1 8.7 80 136-219 9-88 (510)
93 KOG4849 mRNA cleavage factor I 98.2 2.9E-06 6.3E-11 81.7 6.8 75 138-212 81-157 (498)
94 COG5175 MOT2 Transcriptional r 98.2 9.9E-06 2.2E-10 77.8 10.1 91 127-217 104-203 (480)
95 KOG4210 Nuclear localization s 98.1 2.1E-06 4.6E-11 83.9 4.6 82 136-218 183-265 (285)
96 KOG0147 Transcriptional coacti 98.1 1.4E-06 3E-11 88.9 2.7 79 137-216 179-257 (549)
97 PF11608 Limkain-b1: Limkain b 98.1 1.2E-05 2.6E-10 62.2 6.9 68 138-215 3-75 (90)
98 KOG1548 Transcription elongati 98.1 2.4E-05 5.2E-10 75.7 10.4 101 112-216 240-351 (382)
99 KOG1457 RNA binding protein (c 98.1 8.7E-06 1.9E-10 74.1 6.9 65 136-204 209-273 (284)
100 KOG1190 Polypyrimidine tract-b 98.1 2.2E-05 4.7E-10 77.4 9.7 78 137-219 297-375 (492)
101 KOG4206 Spliceosomal protein s 98.0 2.4E-05 5.2E-10 71.8 7.6 77 134-215 143-220 (221)
102 KOG0106 Alternative splicing f 97.9 5.1E-06 1.1E-10 76.7 2.7 67 137-211 99-165 (216)
103 PF08777 RRM_3: RNA binding mo 97.9 1.7E-05 3.8E-10 65.6 5.2 70 138-213 2-76 (105)
104 KOG0129 Predicted RNA-binding 97.8 5.7E-05 1.2E-09 76.9 8.0 69 130-198 363-432 (520)
105 KOG4211 Splicing factor hnRNP- 97.8 5.3E-05 1.2E-09 76.6 7.7 79 135-215 101-180 (510)
106 KOG1855 Predicted RNA-binding 97.7 3.5E-05 7.5E-10 76.5 4.3 81 132-212 226-319 (484)
107 KOG0105 Alternative splicing f 97.6 0.00043 9.3E-09 61.5 9.9 63 137-206 115-177 (241)
108 KOG2314 Translation initiation 97.6 0.00015 3.3E-09 74.3 7.9 76 137-213 58-140 (698)
109 KOG2202 U2 snRNP splicing fact 97.6 3.4E-05 7.3E-10 72.0 2.6 73 152-228 83-156 (260)
110 KOG3152 TBP-binding protein, a 97.6 5.4E-05 1.2E-09 70.5 3.6 72 137-208 74-157 (278)
111 KOG1190 Polypyrimidine tract-b 97.5 0.0002 4.2E-09 70.9 6.2 78 135-216 412-490 (492)
112 KOG4307 RNA binding protein RB 97.4 0.00053 1.2E-08 72.0 7.9 75 138-213 868-943 (944)
113 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00045 9.7E-09 49.6 5.2 52 138-196 2-53 (53)
114 PF08952 DUF1866: Domain of un 97.3 0.0014 2.9E-08 56.8 8.8 74 134-216 24-106 (146)
115 KOG1456 Heterogeneous nuclear 97.3 0.0012 2.5E-08 64.7 8.9 81 134-219 284-365 (494)
116 KOG0120 Splicing factor U2AF, 97.2 0.0008 1.7E-08 69.8 7.6 63 153-215 425-490 (500)
117 KOG2253 U1 snRNP complex, subu 97.2 0.00042 9.1E-09 72.7 5.0 70 136-214 39-108 (668)
118 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0022 4.7E-08 52.4 7.6 76 138-215 7-90 (100)
119 KOG1456 Heterogeneous nuclear 97.1 0.002 4.3E-08 63.2 8.2 77 136-217 119-199 (494)
120 KOG0112 Large RNA-binding prot 97.1 0.00076 1.7E-08 72.9 5.7 78 133-216 451-530 (975)
121 KOG0129 Predicted RNA-binding 97.0 0.0017 3.7E-08 66.4 7.4 63 136-199 258-326 (520)
122 KOG1365 RNA-binding protein Fu 97.0 0.00064 1.4E-08 66.7 4.1 78 137-215 280-360 (508)
123 KOG1996 mRNA splicing factor [ 96.9 0.0021 4.5E-08 61.1 6.7 64 152-215 301-365 (378)
124 KOG0128 RNA-binding protein SA 96.9 0.0006 1.3E-08 73.4 3.3 79 137-216 736-814 (881)
125 KOG2135 Proteins containing th 96.7 0.0023 5E-08 64.7 5.3 74 137-217 372-446 (526)
126 KOG0112 Large RNA-binding prot 96.5 0.00079 1.7E-08 72.8 0.8 80 136-216 371-450 (975)
127 PF08675 RNA_bind: RNA binding 96.5 0.013 2.8E-07 45.6 6.9 55 138-201 10-64 (87)
128 KOG0128 RNA-binding protein SA 96.5 0.00024 5.1E-09 76.4 -3.6 68 138-205 668-735 (881)
129 KOG0115 RNA-binding protein p5 96.4 0.0037 8.1E-08 58.5 4.4 78 138-216 32-113 (275)
130 KOG2068 MOT2 transcription fac 96.3 0.0033 7.2E-08 61.3 3.2 86 134-219 74-165 (327)
131 KOG2193 IGF-II mRNA-binding pr 96.0 0.005 1.1E-07 61.3 3.3 72 138-217 2-76 (584)
132 KOG4307 RNA binding protein RB 95.9 0.0065 1.4E-07 64.1 3.6 79 136-215 433-512 (944)
133 PF15023 DUF4523: Protein of u 95.7 0.048 1E-06 46.8 7.4 76 132-215 81-160 (166)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.025 5.4E-07 51.5 5.8 82 137-218 7-99 (176)
135 PF10309 DUF2414: Protein of u 95.4 0.074 1.6E-06 39.2 6.4 54 138-199 6-62 (62)
136 KOG1365 RNA-binding protein Fu 95.3 0.044 9.5E-07 54.2 6.6 74 138-213 162-239 (508)
137 KOG2591 c-Mpl binding protein, 95.0 0.03 6.6E-07 57.8 4.8 71 136-213 174-248 (684)
138 PF07576 BRAP2: BRCA1-associat 95.0 0.2 4.4E-06 41.7 8.8 69 136-206 12-81 (110)
139 KOG4574 RNA-binding protein (c 94.6 0.057 1.2E-06 58.5 5.8 74 138-217 299-374 (1007)
140 KOG4483 Uncharacterized conser 94.5 0.78 1.7E-05 45.9 12.9 56 136-198 390-446 (528)
141 KOG4660 Protein Mei2, essentia 94.4 0.054 1.2E-06 56.2 4.9 80 136-215 387-471 (549)
142 PF03880 DbpA: DbpA RNA bindin 93.9 0.31 6.7E-06 37.5 7.2 59 147-214 11-74 (74)
143 KOG4285 Mitotic phosphoprotein 93.8 0.2 4.4E-06 48.2 7.2 67 140-214 200-267 (350)
144 KOG4210 Nuclear localization s 93.8 0.067 1.4E-06 52.5 4.1 83 136-218 87-169 (285)
145 PF04847 Calcipressin: Calcipr 93.8 0.23 5E-06 45.4 7.2 62 150-217 8-71 (184)
146 KOG0804 Cytoplasmic Zn-finger 93.0 0.29 6.2E-06 49.8 7.1 68 137-206 74-142 (493)
147 KOG2318 Uncharacterized conser 93.0 0.53 1.2E-05 49.3 9.2 80 134-213 171-302 (650)
148 PF11767 SET_assoc: Histone ly 91.6 0.94 2E-05 34.0 6.7 55 148-211 11-65 (66)
149 KOG2888 Putative RNA binding p 90.4 0.28 6.1E-06 47.8 3.6 10 152-161 172-181 (453)
150 KOG0226 RNA-binding proteins [ 90.2 0.16 3.5E-06 47.8 1.8 73 138-211 97-172 (290)
151 KOG2888 Putative RNA binding p 86.5 0.5 1.1E-05 46.0 2.5 10 150-159 128-137 (453)
152 COG5638 Uncharacterized conser 84.9 3.2 7E-05 41.8 7.3 36 134-169 143-183 (622)
153 KOG2193 IGF-II mRNA-binding pr 80.2 0.096 2.1E-06 52.5 -5.2 75 137-215 80-155 (584)
154 PRK11634 ATP-dependent RNA hel 80.1 21 0.00046 39.3 12.3 61 147-216 497-562 (629)
155 KOG4019 Calcineurin-mediated s 79.1 2 4.3E-05 38.6 3.1 75 136-216 9-89 (193)
156 KOG4410 5-formyltetrahydrofola 77.3 7.5 0.00016 37.4 6.6 47 138-190 331-378 (396)
157 KOG4454 RNA binding protein (R 76.8 0.52 1.1E-05 43.5 -1.2 66 137-203 80-149 (267)
158 smart00596 PRE_C2HC PRE_C2HC d 75.9 5.8 0.00013 29.9 4.4 61 152-215 2-63 (69)
159 KOG2295 C2H2 Zn-finger protein 74.3 0.42 9.1E-06 49.8 -2.7 74 136-209 230-303 (648)
160 PF07530 PRE_C2HC: Associated 72.8 9.9 0.00021 28.7 5.1 61 152-215 2-63 (68)
161 PF03468 XS: XS domain; Inter 72.3 5.7 0.00012 33.4 4.1 56 139-197 10-75 (116)
162 PF12871 PRP38_assoc: Pre-mRNA 70.3 2.9 6.3E-05 34.0 1.8 6 466-471 88-93 (97)
163 PF10567 Nab6_mRNP_bdg: RNA-re 64.3 13 0.00027 36.2 5.0 79 137-215 15-106 (309)
164 KOG1295 Nonsense-mediated deca 62.9 8.5 0.00018 38.7 3.8 68 137-204 7-77 (376)
165 COG0724 RNA-binding proteins ( 62.5 9.3 0.0002 36.0 4.0 64 134-197 222-285 (306)
166 PRK11901 hypothetical protein; 61.3 77 0.0017 31.5 9.9 60 137-201 245-306 (327)
167 COG5178 PRP8 U5 snRNP spliceos 60.9 16 0.00035 41.9 5.7 73 136-213 71-143 (2365)
168 KOG4246 Predicted DNA-binding 57.2 99 0.0021 34.6 10.6 11 137-147 145-155 (1194)
169 KOG2891 Surface glycoprotein [ 53.5 18 0.00038 34.8 4.0 67 137-203 149-246 (445)
170 KOG1923 Rac1 GTPase effector F 52.2 11 0.00023 41.4 2.6 22 139-160 387-412 (830)
171 PF15513 DUF4651: Domain of un 49.4 37 0.0008 25.0 4.2 18 152-169 9-26 (62)
172 KOG4365 Uncharacterized conser 49.1 3.2 7E-05 42.2 -1.7 79 138-217 4-82 (572)
173 KOG4008 rRNA processing protei 45.0 28 0.0006 32.8 3.8 32 136-167 39-70 (261)
174 PF09707 Cas_Cas2CT1978: CRISP 43.5 39 0.00085 26.8 4.0 47 138-187 26-72 (86)
175 KOG3702 Nuclear polyadenylated 41.8 14 0.0003 39.9 1.5 72 138-210 512-583 (681)
176 KOG1925 Rac1 GTPase effector F 38.9 79 0.0017 33.2 6.2 11 149-159 318-328 (817)
177 KOG2548 SWAP mRNA splicing reg 35.3 30 0.00065 36.3 2.7 20 43-62 70-89 (653)
178 KOG1847 mRNA splicing factor [ 35.2 24 0.00053 37.9 2.0 13 421-433 764-776 (878)
179 KOG4840 Predicted hydrolases o 34.2 54 0.0012 31.0 3.9 74 137-215 37-116 (299)
180 PF00403 HMA: Heavy-metal-asso 33.3 1.6E+02 0.0035 20.9 5.8 54 139-198 1-58 (62)
181 PF03439 Spt5-NGN: Early trans 32.0 81 0.0018 24.6 4.2 37 163-204 33-69 (84)
182 KOG0113 U1 small nuclear ribon 31.5 5.2E+02 0.011 25.5 14.8 45 114-162 115-164 (335)
183 PRK11558 putative ssRNA endonu 31.0 67 0.0014 26.1 3.5 49 138-189 28-76 (97)
184 KOG3861 Sensory cilia assembly 30.8 23 0.00051 34.7 1.0 21 148-168 374-394 (438)
185 PRK14548 50S ribosomal protein 30.1 2E+02 0.0043 22.7 6.0 56 140-198 23-80 (84)
186 PF08734 GYD: GYD domain; Int 29.8 1.6E+02 0.0034 23.4 5.5 45 151-199 22-67 (91)
187 CHL00123 rps6 ribosomal protei 29.6 2.4E+02 0.0051 22.7 6.6 57 139-197 10-80 (97)
188 TIGR01873 cas_CT1978 CRISPR-as 27.3 41 0.00089 26.7 1.7 48 138-188 26-74 (87)
189 PRK08559 nusG transcription an 27.1 1.8E+02 0.0039 25.6 6.0 35 164-203 36-70 (153)
190 COG0150 PurM Phosphoribosylami 26.9 28 0.00061 34.8 0.8 48 151-202 275-322 (345)
191 PF14026 DUF4242: Protein of u 26.1 3E+02 0.0066 21.1 7.5 63 139-204 2-71 (77)
192 COG0030 KsgA Dimethyladenosine 25.1 88 0.0019 30.3 3.9 33 137-169 95-127 (259)
193 KOG4213 RNA-binding protein La 23.5 1.8E+02 0.0038 26.5 5.0 50 149-198 118-169 (205)
194 PRK10629 EnvZ/OmpR regulon mod 22.7 4.8E+02 0.01 22.2 7.5 69 139-215 37-109 (127)
195 COG5193 LHP1 La protein, small 22.3 35 0.00076 34.7 0.6 60 138-197 175-244 (438)
196 smart00195 DSPc Dual specifici 21.8 2.1E+02 0.0045 24.1 5.3 73 139-215 7-87 (138)
197 PF08206 OB_RNB: Ribonuclease 21.4 49 0.0011 23.9 1.0 37 178-215 7-44 (58)
198 PF04127 DFP: DNA / pantothena 21.0 1.8E+02 0.0039 26.6 4.9 59 139-199 20-79 (185)
199 PF05189 RTC_insert: RNA 3'-te 20.8 1.4E+02 0.0031 24.1 3.8 49 139-187 12-65 (103)
200 KOG2548 SWAP mRNA splicing reg 20.7 54 0.0012 34.5 1.5 17 181-197 229-245 (653)
201 TIGR00110 ilvD dihydroxy-acid 20.6 3.7E+02 0.0079 29.0 7.7 71 136-223 354-424 (535)
202 PF14893 PNMA: PNMA 20.6 74 0.0016 32.0 2.4 26 135-160 16-41 (331)
203 PF02426 MIase: Muconolactone 20.5 4E+02 0.0087 21.3 6.1 54 143-200 9-72 (91)
No 1
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.5e-38 Score=289.70 Aligned_cols=194 Identities=64% Similarity=1.038 Sum_probs=180.8
Q ss_pred CCCChhhhccCCCCCCCCCCCC----CCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhH
Q 011668 40 TGLTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAE 115 (480)
Q Consensus 40 ~~~pp~~~~lf~p~pp~~~~pp----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~k~~~~~~ 115 (480)
..|||+|++||+|.||++|+|| |....+++++||++|+..|..+.+ +|+....++..+..++....++++...
T Consensus 3 ~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~~~tGvA~~~~~~~~~~d---~p~~~p~~t~~e~~er~~~~k~e~~~~ 79 (335)
T KOG0113|consen 3 QFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTNPYTGVAQYLSTFEDPKD---APPKFPVETPEEPLERGRREKTEKIPH 79 (335)
T ss_pred ccCCccHHHhcCCCCCcccCCccccChhhccCCCcccHHHHHHhhcCccc---CCCcCcccchhhHHHhhhhhhhhhhHH
Confidence 4578899999999999999998 667778899999999999988766 455566778888888888888888888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHH
Q 011668 116 KAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAA 195 (480)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A 195 (480)
.+...+..|+|..++++.++|.+||||+-|++.++|..|+..|+.||.|+.|.||.+..||+++|||||+|+++.++..|
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~A 159 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA 159 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeCCeEEEEeeecCCCCCCCCCCCCCCCCCCccC
Q 011668 196 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRV 236 (480)
Q Consensus 196 ~~~l~g~~i~gr~l~V~~a~~~~~~~~~~~~~ggg~gg~~~ 236 (480)
++..+|..|+|+.|.|++..+.+++.|.+++.|||+||...
T Consensus 160 YK~adG~~Idgrri~VDvERgRTvkgW~PRRLGGGLGg~r~ 200 (335)
T KOG0113|consen 160 YKDADGIKIDGRRILVDVERGRTVKGWLPRRLGGGLGGRRY 200 (335)
T ss_pred HHhccCceecCcEEEEEecccccccccccccccCCcCCccc
Confidence 99999999999999999999999999999999999998774
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.3e-19 Score=155.96 Aligned_cols=84 Identities=26% Similarity=0.599 Sum_probs=80.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+||++.+|+++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|+.||..||+..|+|+.|+|+|+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6554
No 3
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.2e-17 Score=142.15 Aligned_cols=78 Identities=31% Similarity=0.681 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++||||||+..+++.+|+.+|..||.|..|+|..+ +.|||||+|++..+|+.|+..|+|..|+|..|.|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 578999999999999999999999999999999875 459999999999999999999999999999999999987
Q ss_pred CCC
Q 011668 217 RTV 219 (480)
Q Consensus 217 ~~~ 219 (480)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 654
No 4
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-17 Score=157.27 Aligned_cols=117 Identities=28% Similarity=0.436 Sum_probs=99.1
Q ss_pred HHHHHhhhHHHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEE
Q 011668 107 KLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY 186 (480)
Q Consensus 107 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F 186 (480)
.+..+..+...+..|..++..+.+.+.+ |.++|||+.|++.||.++|.-||+.||.|..|.|+.+..||.+..||||+|
T Consensus 210 e~~~e~ea~~~A~iLEmvGDlpdAd~~P-PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEF 288 (479)
T KOG0415|consen 210 EVLAEKEAKAQAVILEMVGDLPDADVKP-PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEF 288 (479)
T ss_pred HHHHHHHHHhhHhHHHHhcCCcccccCC-CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeee
Confidence 3344555555666666666666555544 778999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHHHHcCCceeCCeEEEEeeecCCCCCCCCC
Q 011668 187 MHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 224 (480)
Q Consensus 187 ~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~~~~~~~~ 224 (480)
++.++|++|+-.|+++.|+.+.|+|.|++....-.|++
T Consensus 289 en~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~ 326 (479)
T KOG0415|consen 289 ENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQ 326 (479)
T ss_pred cchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccc
Confidence 99999999999999999999999999998755544543
No 5
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=141.20 Aligned_cols=82 Identities=34% Similarity=0.602 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|-|-||.+.|+.++|..+|++||.|.+|.|+.|+.|..++|||||-|....+|+.||.+|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
--
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 53
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.4e-17 Score=134.62 Aligned_cols=81 Identities=32% Similarity=0.564 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.++|||||||++.++|++|.++|++||+|..|.|-.|+.+..+.|||||+|.+.++|+.||..++|+.|+.++|.|+|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
+
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=3.9e-16 Score=156.41 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC--eEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g--r~l~V~~ 213 (480)
..++|||+|||+.+|+++|+++|++||+|+.|.|+.+..|++++|||||+|.+.++|++||..||++.|.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999876 6899999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87643
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=1.6e-15 Score=153.93 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.+|||+|||+.+++++|.++|++||.|..|.|+.+..|+.++|||||+|.+.++|..||..|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 643
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.7e-15 Score=114.95 Aligned_cols=70 Identities=29% Similarity=0.697 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 140 l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
|||+|||+.+|+++|.++|++||.|..+.|+.+ .++..++||||+|.+.++|+.|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999887 5688999999999999999999999999999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.4e-15 Score=150.79 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
....++|||+|||+++|+++|+++|+.||.|+.|+|+.+..|+.++|||||+|.+.++|..||..|||..|.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 864
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.59 E-value=3.8e-15 Score=151.30 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|.++|+.||+|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.8e-15 Score=134.61 Aligned_cols=83 Identities=30% Similarity=0.466 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+..++|-|.||+.++++.+|.++|.+||.|..|.|..|+.||.++|||||.|.+.++|.+||..|||+-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 13
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.8e-16 Score=136.84 Aligned_cols=85 Identities=33% Similarity=0.532 Sum_probs=79.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.-|||||||+..||.+|..+|++||+|+.|.|+.|+.||+++||||+.|+++.+...|+..|||..|.|+.|+|++..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCC
Q 011668 216 GRTVP 220 (480)
Q Consensus 216 ~~~~~ 220 (480)
....+
T Consensus 114 ~Yk~p 118 (219)
T KOG0126|consen 114 NYKKP 118 (219)
T ss_pred cccCC
Confidence 55444
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.7e-15 Score=135.48 Aligned_cols=80 Identities=28% Similarity=0.583 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++||||||+|.+..+.|+.+|++||+|+++.|+.|+.||+++|||||+|.+.++|..|++.. +-.|+|+...|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3468999999999999999999999999999999999999999999999999999999999854 467999999999876
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 15
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.4e-14 Score=126.65 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||||||..|.+.+|+.||-+||.|..|.|..- ..+.+||||+|++..+|+.||..-+|..++|..|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4679999999999999999999999999999988543 3356799999999999999999999999999999999988
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
+-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 643
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=3.7e-14 Score=133.48 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+||++.+|+++|++||+.||.|..|.|+.+.. .+|||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46999999999999999999999999999999998753 46899999999999999996 999999999999999864
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.5e-14 Score=149.07 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=81.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+||++.+++++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCC
Q 011668 216 GRTVPNWR 223 (480)
Q Consensus 216 ~~~~~~~~ 223 (480)
..+...+.
T Consensus 283 ~pP~~~~~ 290 (612)
T TIGR01645 283 TPPDALLQ 290 (612)
T ss_pred CCccccCC
Confidence 75554443
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=3.9e-14 Score=149.59 Aligned_cols=80 Identities=33% Similarity=0.608 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+||++.+++++|..+|.+||.|..|.|+.++.|++++|||||+|.+.++|..||..|||..|+|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998643
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=5.9e-14 Score=107.84 Aligned_cols=70 Identities=33% Similarity=0.765 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 140 l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
|||+|||+.+++++|.++|+.||.|..|.+..++. +.++++|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999999999999884
No 20
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=118.41 Aligned_cols=83 Identities=33% Similarity=0.475 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
....|||+++...+|+++|...|..||+|+.|.|..|..||..+|||+|+|++.++|++||..|||..|.|..|.|+|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=4.8e-14 Score=133.56 Aligned_cols=82 Identities=21% Similarity=0.482 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+..+.|+|.|||+.+.+.+|..+|++||.|.+|.|+.+. ..+||||||+|++.++|++|-.+|||..|.|++|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4456789999999999999999999999999999999875 55899999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8875
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.48 E-value=4.8e-14 Score=123.23 Aligned_cols=82 Identities=28% Similarity=0.409 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+...|||||||+..++++.|.++|-++|.|+.|.|+.+..|....|||||+|.++++|+.||+.||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.1e-13 Score=136.98 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEech--hhHHHHHHHcCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT--RDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~--~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
...+||||||++.|++++|..+|..||.|..|.|+ ..|| +|||||+|.+. .++.+||..|||..|.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999999 4567 89999999987 689999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 875
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=9.3e-14 Score=128.37 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
...-|||+.|.+.|+.+.|++.|.+||+|.+++|+.|..|++++||+||.|.+.++|+.||..|||.+|+++.|+..||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
.++
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 665
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1e-13 Score=127.71 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..++..|+|||-.||.++.+.+|..+|-.||.|++.+|..|..|+.+++|+||.|.+..++.+||..|||..|+-+.|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9987754
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.47 E-value=2.2e-13 Score=145.28 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.6e-14 Score=125.93 Aligned_cols=84 Identities=30% Similarity=0.536 Sum_probs=80.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..+|||||+|...+++.-|...|-.||.|+.|.|+.|..+++.+|||||+|...++|.+||..||+.+|.|+.|+|++|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7544
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=3.3e-13 Score=141.96 Aligned_cols=80 Identities=30% Similarity=0.625 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999763
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5e-13 Score=123.85 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..+|||+||++.+|+++|++||+.||+|..|.|+.+. ...+||||+|.+.++|+.||. |+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4799999999999999999999999999999999884 455899999999999999996 999999999999987553
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=8.1e-13 Score=100.65 Aligned_cols=72 Identities=38% Similarity=0.702 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
+|||+|||..+++++|..+|.+||.|..+.++.+. +.+.|+|||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999998776 6788999999999999999999999999999999874
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.1e-13 Score=122.61 Aligned_cols=78 Identities=23% Similarity=0.481 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+..++||||||+..+|+++|+..|+.||.|.+|+|..+ +||+||.|.+.|+|..||..|||..|.|..|+|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 445789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
.+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 7754
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.41 E-value=7.3e-13 Score=139.78 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l~V~~ 213 (480)
...++|||+|||+++++++|.++|++||.|..|+|+.+ .+|.++|||||+|.+.++|+.||..||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999999999999999999999999999999999 78999999999999999999999999999985 78877776
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=7.3e-13 Score=142.90 Aligned_cols=78 Identities=24% Similarity=0.520 Sum_probs=75.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
+|||+|||+.+|+++|.++|++||.|..|.|+.+..|++++|||||+|.+.++|..||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999763
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=8.5e-13 Score=138.86 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999997 99999999999999865
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=98.65 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=67.2
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 142 VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 142 V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
|+|||..+++++|..+|..||.|..+.|..+..++.++|||||+|.+.++|..|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888788999999999999999999999999999999999874
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.3e-12 Score=102.35 Aligned_cols=78 Identities=28% Similarity=0.482 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+..|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|-|||.|++..+|..|+..|+|..++++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 456899999999999999999999999999999976544 57999999999999999999999999999999998855
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 3
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.37 E-value=1.5e-12 Score=140.42 Aligned_cols=82 Identities=23% Similarity=0.473 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
...++|||+||++.+|+++|+++|+.||.|+.|+|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 35678999999999999999999999999999999998 57999999999999999999999999999999999999998
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 753
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.4e-12 Score=126.66 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee-CCeEEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL-DGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i-~gr~l~V~~ 213 (480)
.-.+-||||.||.++.|++|.-||++.|+|.++.|+.++.+|.++|||||+|.+.++|+.||..||+++| .|+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4568899999999999999999999999999999999999999999999999999999999999999998 588888887
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 654
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=1e-12 Score=133.62 Aligned_cols=81 Identities=31% Similarity=0.656 Sum_probs=78.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
+.|||||||+.+++++|..+|+..|.|..++++.|+.||+++|||||+|.+.+.|..|+..|||..|.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred C
Q 011668 218 T 218 (480)
Q Consensus 218 ~ 218 (480)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=3.3e-12 Score=134.84 Aligned_cols=77 Identities=27% Similarity=0.525 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY--GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..++|||+||++.+++++|+++|++| |.|+.|.++. +||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998763 5999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 011668 214 ERGRTVP 220 (480)
Q Consensus 214 a~~~~~~ 220 (480)
+.+....
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9875543
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=2.9e-12 Score=124.11 Aligned_cols=79 Identities=41% Similarity=0.787 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..+|||+|||+.+|+++|..+|..||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999975
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=5.8e-12 Score=96.39 Aligned_cols=74 Identities=36% Similarity=0.717 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
+|||+|||+.+++++|..+|..||.|..+.+..+..+ .+.|+|||+|.+.++|..|+..+++..|.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887654 6789999999999999999999999999999999874
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.5e-12 Score=118.18 Aligned_cols=82 Identities=28% Similarity=0.496 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..+.|+|--||.++|+++|+.+|...|+|++|+++.|+.+|.+.||+||.|..+++|++||..|||..|..+.|+|.||.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
+.
T Consensus 120 PS 121 (360)
T KOG0145|consen 120 PS 121 (360)
T ss_pred CC
Confidence 75
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.5e-12 Score=116.51 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=77.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
...|||-||.+++.|..|+++|..||.|..|+|+.|..|++++|||||.+.+.++|..||..|||+.|+++.|.|.|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 3
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7e-12 Score=126.03 Aligned_cols=82 Identities=26% Similarity=0.528 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+-..|+|.||||.|...+|..+|+.||.|..|.|+.... |+.+|||||+|....+|..||..|||..|+|+.|-|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 467899999999999999999999999999999998776 5666999999999999999999999999999999999998
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
.+.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 654
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.3e-12 Score=125.92 Aligned_cols=81 Identities=35% Similarity=0.581 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc-----CC-ceeCCeEEE
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-----DG-RKLDGRRVL 210 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l-----~g-~~i~gr~l~ 210 (480)
..||||.|||+++|+++|.++|++||+|.++.|+.++.|+.++|.|||.|.++.+|..||.+. .| +.|+|+.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 479999999999999999999999999999999999999999999999999999999999976 33 679999999
Q ss_pred EeeecCC
Q 011668 211 VDVERGR 217 (480)
Q Consensus 211 V~~a~~~ 217 (480)
|..|.++
T Consensus 372 v~~Av~R 378 (678)
T KOG0127|consen 372 VTLAVTR 378 (678)
T ss_pred eeeccch
Confidence 9998764
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.29 E-value=1.2e-11 Score=130.75 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 135 DPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.++++|||+||++ .+|+++|.++|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998753 58999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 87643
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.7e-12 Score=119.91 Aligned_cols=77 Identities=34% Similarity=0.646 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
-|.||||.|.+.+.|+.|+..|..||.|++|.+.||+.|++.+|||||+|+-++.|..|++.|||..|+|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999985
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.27 E-value=1.8e-11 Score=129.36 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHH--cCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ--ADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~--l~g~~i~gr~l~V~~ 213 (480)
|+++|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|.+.++|..||.. +++..|.|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5689999999999999999999999999999999853 57999999999999999986 478999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 50
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.26 E-value=7.5e-12 Score=121.11 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=64.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCC---CCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..|.|.||.+.+|.++|+.||..+|+|..+.|+.+.. .....-.|||.|.+...+..|..+.|.++|+-..|+|-|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4899999999999999999999999999998865432 2334568999999999999999977766777777777665
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
..
T Consensus 88 ~~ 89 (479)
T KOG4676|consen 88 DE 89 (479)
T ss_pred CC
Confidence 43
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=115.64 Aligned_cols=72 Identities=25% Similarity=0.516 Sum_probs=68.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
.+|||||||..+++.+|+.+|++||+|.+|.|++| ||||..++...++.||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999865 9999999999999999999999999999999998876
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=1.4e-11 Score=124.57 Aligned_cols=81 Identities=33% Similarity=0.663 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
|...||||||.+++++++|..+|+.||.|..|.++.+..||.++|||||+|.+.+.|..|+..|||..|.|+.|+|.+..
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 44449999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
.
T Consensus 357 ~ 357 (549)
T KOG0147|consen 357 E 357 (549)
T ss_pred e
Confidence 4
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=4e-11 Score=92.09 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=55.4
Q ss_pred HHHHHHHhh----cCCCeeEEE-ecccCCC--CCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 151 ESKIKREFE----SYGPIKRVR-LVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 151 e~~L~~~F~----~~G~i~~v~-i~~d~~t--~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
+++|.++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999995 6666666 8999999999999999999999999999999999863
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.7e-11 Score=118.81 Aligned_cols=82 Identities=27% Similarity=0.542 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce-eCC--eEEEEe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LDG--RRVLVD 212 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~-i~g--r~l~V~ 212 (480)
...+||||-||..++|.+|+.+|++||.|.+|.|+.|+.|+.++|||||.|.+.++|.+|+.+|++.. |-| ..|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 44579999999999999999999999999999999999999999999999999999999999998865 444 578888
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
+|.+.
T Consensus 113 ~Ad~E 117 (510)
T KOG0144|consen 113 YADGE 117 (510)
T ss_pred ccchh
Confidence 87753
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.2e-11 Score=119.90 Aligned_cols=74 Identities=32% Similarity=0.587 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..+.|||.||+.+||++.|+++|++||.|..|+.+.| ||||.|.+.++|.+||+.|||+.|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4678999999999999999999999999999988865 99999999999999999999999999999999998
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
+.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 73
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6e-11 Score=86.85 Aligned_cols=56 Identities=30% Similarity=0.710 Sum_probs=50.8
Q ss_pred HHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 154 IKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 154 L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
|..+|++||+|..|.+..+. .++|||+|.+.++|..|+..|||..|+|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997643 589999999999999999999999999999999986
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.1e-10 Score=114.46 Aligned_cols=89 Identities=22% Similarity=0.451 Sum_probs=82.2
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 130 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
....+.....|||.+||-++-..+|...|..||.|...++..|+.|+.+++|+||.|++..+|..||..|||..|+.+.|
T Consensus 417 ~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krl 496 (510)
T KOG0144|consen 417 GQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRL 496 (510)
T ss_pred ccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccc
Confidence 34456667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCC
Q 011668 210 LVDVERGRT 218 (480)
Q Consensus 210 ~V~~a~~~~ 218 (480)
+|.+...+.
T Consensus 497 kVQlk~~~~ 505 (510)
T KOG0144|consen 497 KVQLKRDRN 505 (510)
T ss_pred eEEeeeccC
Confidence 999987543
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=1.9e-11 Score=107.15 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
.+.+..|||+||.+.+.+..|..+|+.||.|.. -+|+.+..||.++|||||.|.+.+.+.+||..|||..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344578999999999999999999999998755 4788899999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
++..+.
T Consensus 173 ya~k~~ 178 (203)
T KOG0131|consen 173 YAFKKD 178 (203)
T ss_pred EEEecC
Confidence 997543
No 59
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.17 E-value=1.2e-12 Score=126.49 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~ 205 (480)
..||+|++|+..+...+|.++|..+|+|.+..|.. +....+|.|+|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 36799999999999999999999999998887754 4445689999999999999998 6777665
No 60
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=104.22 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY-GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
....+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++.+.|..|.+.||++.|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999998 78888888899999999999999999999999999999999999999999986
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=2.1e-10 Score=112.52 Aligned_cols=78 Identities=22% Similarity=0.493 Sum_probs=72.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHh-hcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 138 KTLFVARLSYETTESKIKREF-ESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..+||+|||+++.|++|+.+| ++.|+|++|.|+.|.. |+++|+|.|+|+++|.+++|++.||.+.+.|+.|+|.-...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 459999999999999999999 5689999999999864 99999999999999999999999999999999999986544
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.6e-10 Score=108.29 Aligned_cols=76 Identities=28% Similarity=0.552 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++||||||.+.++.++|+..|++||.|++|.|+.+ |+||.|.-.++|..||..|+|.+|.|+.++|+++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 36788999999999999999999999999999999864 9999999999999999999999999999999998
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
..+.
T Consensus 148 tsrl 151 (346)
T KOG0109|consen 148 TSRL 151 (346)
T ss_pred cccc
Confidence 8754
No 63
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.05 E-value=5.1e-10 Score=112.95 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
...+|||.+|...|...+|+.||++||+|+..+|+++..+...++|+||++.+.++|.+||..|+.+.|.|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999998888889999999999999999999999999999999999887
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
..+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 544
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.01 E-value=3e-09 Score=111.44 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..++|||||+|+..|++.+|..+|+.||+|.+|.++. ++|||||+.....+|.+||.+|+++.|.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3468999999999999999999999999999998865 4689999999999999999999999999999999999
Q ss_pred cCCCC
Q 011668 215 RGRTV 219 (480)
Q Consensus 215 ~~~~~ 219 (480)
.+..+
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 87643
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.00 E-value=2.5e-09 Score=108.41 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..+|||.|||++++..+|.++|..||.|+...|..-...++..+||||+|.+.++++.||. .+-..|+++.|.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 3459999999999999999999999999988775433224444999999999999999999 468889999999998776
Q ss_pred CCC
Q 011668 217 RTV 219 (480)
Q Consensus 217 ~~~ 219 (480)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.98 E-value=1.3e-09 Score=99.46 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIKR----EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~----~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
|..||||-||+..+..++|.. +|++||.|..|.... |.+.+|-|||.|.+.+.|..|+..|+|..|.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999988776 999999999887764 5789999999999999999999999999999999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
+||....
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998753
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.97 E-value=1.8e-09 Score=115.20 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEecccC---CCCCccceEEEEEechhhHHHHHHHcCC
Q 011668 135 DPYKTLFVARLSYET----------TESKIKREFESYGPIKRVRLVTDK---ETNKPRGYAFIEYMHTRDMKAAYKQADG 201 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~----------te~~L~~~F~~~G~i~~v~i~~d~---~t~~~~g~afV~F~~~~~a~~A~~~l~g 201 (480)
.++.+|+|.||...- ..++|.++|++||.|+.|.|+.+. .++...|||||+|.+.++|.+||..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 467889999996421 235789999999999999998652 3455679999999999999999999999
Q ss_pred ceeCCeEEEEeeecC
Q 011668 202 RKLDGRRVLVDVERG 216 (480)
Q Consensus 202 ~~i~gr~l~V~~a~~ 216 (480)
..|+|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999653
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.4e-09 Score=108.28 Aligned_cols=76 Identities=21% Similarity=0.508 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
.|||.||++.++...|.++|+.||+|.+|+|..+.. | ++|| ||+|.++++|.+||..|||..+.|+.|.|.....+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 399999999999999999999999999999999875 4 9999 99999999999999999999999999999876653
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=1e-09 Score=107.32 Aligned_cols=82 Identities=29% Similarity=0.534 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++||||+|+|.++++.|..+|.+||+|..|.|+.++.|+.++||+||+|.+.+.+.++|. ...+.|+|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45789999999999999999999999999999999999999999999999999999999987 55678999999888877
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 654
No 70
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.90 E-value=7.2e-09 Score=83.97 Aligned_cols=88 Identities=55% Similarity=0.899 Sum_probs=74.8
Q ss_pred CCCChhhhccCCCCCCCCCCCCC----CCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhH
Q 011668 40 TGLTANLLKLFEPRAPLEYKPPP----EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAE 115 (480)
Q Consensus 40 ~~~pp~~~~lf~p~pp~~~~pp~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~k~~~~~~ 115 (480)
..|||+|++||+|.||++|++|+ ....+++++||++|+..|..+.. .++...+++..+........+.+..+.
T Consensus 3 ~~lPp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~itGvs~~l~~~~~~~~---~~~~~~~et~~e~~~r~~~ek~~~~~~ 79 (94)
T PF12220_consen 3 SKLPPNLLALFAPRPPLPYLPPIDYPPEKRKTPPITGVSQYLSEFEDYKD---EPPPEPTETKEERRERKRKEKKEKNEE 79 (94)
T ss_pred CcCCHHHHHHcCCCCCCCCCCccccCcccccCCCCCcHHHHHHHHhcccc---CCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999984 34556669999999999987765 233566899999999999999999999
Q ss_pred HHHHHHhhcCCCCCC
Q 011668 116 KAAEELKKYDPHNDP 130 (480)
Q Consensus 116 ~~~~~~~~~~~~~~~ 130 (480)
.+...+..|+|..++
T Consensus 80 ~l~~~l~~w~P~~DP 94 (94)
T PF12220_consen 80 KLEEELKEWDPHEDP 94 (94)
T ss_pred HHHHHHHhcCCCCCC
Confidence 999999999988653
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.88 E-value=2.7e-09 Score=104.87 Aligned_cols=75 Identities=19% Similarity=0.397 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
...|+|||.|||+++||+.|++-|..||.|.++.|+. .|+++| .|.|.++++|+.|+..|+|..|+|+.|.|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3568899999999999999999999999999999864 377776 89999999999999999999999999999873
No 72
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=5.3e-09 Score=96.45 Aligned_cols=79 Identities=20% Similarity=0.487 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
-..||+|.|...++.+.|...|.+|-.....+++.++.||+++||+||.|.+..++..|+..|||..++.+.|++.-+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 3579999999999999999999999998899999999999999999999999999999999999999999999876543
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=6.6e-09 Score=100.04 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.+.|||..+.++.++++|+.+|+.||+|+.|.+...+.++..+||+||+|.+..+...||..||-..|+|..|+|--+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986554
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.84 E-value=6.2e-09 Score=101.84 Aligned_cols=83 Identities=28% Similarity=0.487 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.+||||+|+..+++++|+++|.+||.|..+.|+.|..+..++||+||+|.+.+.+.+++. ..-+.|+|+.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46789999999999999999999999999999999999999999999999999999999988 67889999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8644
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.7e-08 Score=97.00 Aligned_cols=75 Identities=25% Similarity=0.485 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHH-cCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ-ADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~-l~g~~i~gr~l~V~~a 214 (480)
..++|||+||...+++.+|..+|.+||+|..|.++.. +++|||+|.+.++|+.|... +|...|+|..|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4578999999999999999999999999999998754 35999999999999988764 6777899999999998
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 76
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2.4e-09 Score=111.47 Aligned_cols=81 Identities=23% Similarity=0.574 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
++.|+|.|||+.++-.+|+.||..||.|..|.|+.-...+..+|||||+|.++.+|..|+..|..+.|.|+.|+++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57899999999999999999999999999999987655566789999999999999999999999999999999999875
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 4
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=8.4e-09 Score=97.33 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
....|||+|+.+.+|.++|..+|+.||.|..|.|+++..++.++||+||+|.+.+.++.||. |||..|.|..|.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45789999999999999999999999999999999999999999999999999999999999 99999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=8.3e-09 Score=107.50 Aligned_cols=77 Identities=25% Similarity=0.519 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCC---CCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET---NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+|||.||++.+|.+.|..+|...|.|..|.|...+.. -.+.|||||+|.+.++|..|+..|+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988655431 2345999999999999999999999999999999999987
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.81 E-value=1.7e-08 Score=97.00 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
..+.|||.|||..+|.+++.++|++||.|. .|+|..+.. |+.+|-|+|.|...+++..||..|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456699999999999999999999999875 367777765 99999999999999999999999999999999
Q ss_pred EEEEeeecC
Q 011668 208 RVLVDVERG 216 (480)
Q Consensus 208 ~l~V~~a~~ 216 (480)
.|+|+.|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999998863
No 80
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.2e-09 Score=96.75 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..||||+||...|+++-|.++|-+.|.|..|.|+.+.. ++.+ ||||.|.++..+.-|+++|||..|.+..|.|.+-.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 46899999999999999999999999999999988775 5566 999999999999999999999999999999988544
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.4e-08 Score=102.67 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=70.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
..|||| +.+|+..|.++|+.+|.|.+|.|+.+. | +.|||||.|.++.+|++||..||...|.|+.|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 369999 899999999999999999999999998 6 9999999999999999999999999999999999998754
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=9.1e-09 Score=94.78 Aligned_cols=71 Identities=32% Similarity=0.704 Sum_probs=65.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..||||+|++.+.+.+|..||..||.|..|.|.. ||+||+|.+..+|..||..||+..|+|-.|.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3699999999999999999999999999887753 6999999999999999999999999999999999875
No 83
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.4e-08 Score=94.18 Aligned_cols=81 Identities=21% Similarity=0.486 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce-eCC--eEEEEe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LDG--RRVLVD 212 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~-i~g--r~l~V~ 212 (480)
..++||||-|...-.|++++.+|..||.|.+|.++.... |.++|+|||.|.+..+|..||..|+|.. +-| ..|+|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 457899999999999999999999999999999998875 8999999999999999999999999965 433 569999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
|+...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98753
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.75 E-value=6.7e-08 Score=87.58 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec-ccCCCCCccceEEEEEechhhHHHHHHHcCCceeC---CeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLV-TDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~-~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~---gr~l~V 211 (480)
..+||||.+||.++..-+|..+|..|--.+.+.|. ..+...-.+.+|||+|.+...|.+|+..|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999988544444442 22222234579999999999999999999999986 788999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
++|+..+
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998644
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=3.3e-08 Score=93.09 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..+|+|.||++.|++++|+++|..||.++.+.|-+++. |.+.|.|-|.|...++|..||+.+||+.|+|..|+|.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 36899999999999999999999999999888888874 99999999999999999999999999999999999988665
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 86
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.66 E-value=4.1e-08 Score=101.98 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCC---CCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
.+++|||+||++.++++.|...|..||.|..|+|++... ......+|||.|.+..+|++|+..|+|..|.+..|++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 356799999999999999999999999999999987642 23445789999999999999999999999999999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
|+++.
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98653
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=4.6e-08 Score=100.54 Aligned_cols=94 Identities=28% Similarity=0.429 Sum_probs=83.9
Q ss_pred hcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCc
Q 011668 123 KYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 202 (480)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~ 202 (480)
.+.+.............|||+|||..+++.++.+++..||.+..+.++.+..+|.++||||.+|.+..-...|+..|||+
T Consensus 275 ~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm 354 (500)
T KOG0120|consen 275 KVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGM 354 (500)
T ss_pred ccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchh
Confidence 34444444455556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEEeeecC
Q 011668 203 KLDGRRVLVDVERG 216 (480)
Q Consensus 203 ~i~gr~l~V~~a~~ 216 (480)
.+++..|+|+.|-.
T Consensus 355 ~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 355 QLGDKKLVVQRAIV 368 (500)
T ss_pred hhcCceeEeehhhc
Confidence 99999999998764
No 88
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.57 E-value=1.1e-07 Score=97.12 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee---CCeE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---DGRR 208 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i---~gr~ 208 (480)
...++++|||.||---+|.-+|+.++. .+|.|..++| | +.+.+|||.|.+.++|.+.+.+|||+.+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455678999999999999999999998 5777777733 2 3467999999999999999999999886 7889
Q ss_pred EEEeeecCCC
Q 011668 209 VLVDVERGRT 218 (480)
Q Consensus 209 l~V~~a~~~~ 218 (480)
|.|.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9999987643
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=91.89 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
...+|||.+|+..+++..|.++|.+||.|. .|+|.++++|+.+++-|.|+|.+...|++||..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 446899999999999999999999999884 467888999999999999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q 011668 208 RVLVDVERGRT 218 (480)
Q Consensus 208 ~l~V~~a~~~~ 218 (480)
.|+|.+|...+
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887655
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=3.9e-07 Score=73.77 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC----CeEEEE
Q 011668 138 KTLFVARLSYETTESKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD----GRRVLV 211 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~--~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~----gr~l~V 211 (480)
+||.|.|||...|.++|.+++.. .|..-.+.|+.|..++.+.|||||-|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 367788899999999999999999999999999999999999875 567788
Q ss_pred eeec
Q 011668 212 DVER 215 (480)
Q Consensus 212 ~~a~ 215 (480)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 91
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=6e-08 Score=98.85 Aligned_cols=75 Identities=28% Similarity=0.487 Sum_probs=66.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+..+|+|-|||..|++++|..+|+.||+|..|... ....|.+||+|.+.-+|+.|++.|++..|.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3344567899999999999999999999999999997653 44568999999999999999999999999999998
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=3.3e-06 Score=85.08 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
....|-+.+|||.+|+++|.+||+.|+ |..+.+++ .+|++.|-|||+|.++++++.||+ .+-..|..+.|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 445788999999999999999999995 77766654 469999999999999999999999 68888999999998776
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
....
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5443
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.20 E-value=2.9e-06 Score=81.66 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=67.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 138 KTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+|||||-|++|+++|.+.+...| .|.++++..+..+|.++|||+|...+..++++.++.|-...|.|..-+|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4699999999999999999998877 67788889999999999999999999999999999999999999865554
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.19 E-value=9.9e-06 Score=77.76 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHH------HHHHhhcCCCeeEEEecccC-CCCCccce--EEEEEechhhHHHHHH
Q 011668 127 HNDPNVSGDPYKTLFVARLSYETTESK------IKREFESYGPIKRVRLVTDK-ETNKPRGY--AFIEYMHTRDMKAAYK 197 (480)
Q Consensus 127 ~~~~~~~~~~~~~l~V~nL~~~~te~~------L~~~F~~~G~i~~v~i~~d~-~t~~~~g~--afV~F~~~~~a~~A~~ 197 (480)
+...++...+.+-|||-+|++.+..++ -.++|.+||.|..|.|-... ......+. .||+|.+.++|..||.
T Consensus 104 khlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa 183 (480)
T COG5175 104 KHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIA 183 (480)
T ss_pred cccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHH
Confidence 344455556667899999999887766 24789999999887664322 11111232 3999999999999999
Q ss_pred HcCCceeCCeEEEEeeecCC
Q 011668 198 QADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 198 ~l~g~~i~gr~l~V~~a~~~ 217 (480)
.++|..++|+.|++.|...+
T Consensus 184 ~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 184 EVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred HhccccccCceEeeecCchH
Confidence 99999999999999987654
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.14 E-value=2.1e-06 Score=83.87 Aligned_cols=82 Identities=30% Similarity=0.586 Sum_probs=74.4
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLF-VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~-V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+..++| |+||+..++.++|..+|..+|.|..+.++.+..++.++|||||.|.....+..|+.. ....|.+..|.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445555 999999999999999999999999999999999999999999999999999999886 788899999999988
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
....
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 7654
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.11 E-value=1.4e-06 Score=88.90 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=74.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..|||+--|+..++.-+|.+||+.+|+|..|.|+.|..++.++|.|||+|.+.+.+..||. |.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 5789999999999999999999999999999999999999999999999999999999996 999999999999998654
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.09 E-value=1.2e-05 Score=62.21 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=48.0
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 138 KTLFVARLSYETTESK----IKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~----L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..|||.|||.+..... |..++..|| .|..|. .+-|+|.|.+++.|..|+..|+|..+-|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999888654 567777886 665551 2689999999999999999999999999999999
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.08 E-value=2.4e-05 Score=75.69 Aligned_cols=101 Identities=20% Similarity=0.429 Sum_probs=76.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCC----CCC-------HHHHHHHhhcCCCeeEEEecccCCCCCccc
Q 011668 112 KGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSY----ETT-------ESKIKREFESYGPIKRVRLVTDKETNKPRG 180 (480)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~----~~t-------e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g 180 (480)
+...++...+..|.|........-..+||+|.||=. ..+ .++|.+-..+||.|..|.|.- ..+.|
T Consensus 240 kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdG 315 (382)
T KOG1548|consen 240 KKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDG 315 (382)
T ss_pred HHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCc
Confidence 334455555666766664444445668899999732 223 255667789999999997753 45779
Q ss_pred eEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 181 ~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.+.|.|.+.++|..||+.|+|..|+|+.|...+..+
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999999999999999999999999999999988654
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.08 E-value=8.7e-06 Score=74.08 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=53.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
.+.||||.||.++|||++|+.+|+.|-...-++|-.. | ...+|||+|++.+.|..||..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 4678999999999999999999999976655655321 2 235899999999999999999988765
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.06 E-value=2.2e-05 Score=77.42 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=70.1
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.++|.|.||.. .+|.+-|..+|+-||.|..|+|+.++. -.|+|.|.+...|..|+..|+|..|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999975 489999999999999999999998753 479999999999999999999999999999999988
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
-..+
T Consensus 372 H~~v 375 (492)
T KOG1190|consen 372 HTNV 375 (492)
T ss_pred Cccc
Confidence 6544
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.96 E-value=2.4e-05 Score=71.79 Aligned_cols=77 Identities=23% Similarity=0.487 Sum_probs=67.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l~V~ 212 (480)
..|..+||+.|||..++.+.|..+|.+|.....|.++... .+.|||+|.+...+..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4577899999999999999999999999999999987643 479999999999999999999998886 7788887
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=5.1e-06 Score=76.75 Aligned_cols=67 Identities=34% Similarity=0.559 Sum_probs=60.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
.+.|+|.||+..+.+.+|..+|.++|.+....+ ..+++||+|.+.++|..||..|+|..|.++.|.|
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 467999999999999999999999999855443 2469999999999999999999999999999999
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.91 E-value=1.7e-05 Score=65.62 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=44.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC-----ceeCCeEEEEe
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG-----RKLDGRRVLVD 212 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g-----~~i~gr~l~V~ 212 (480)
+.|+|.||+..++.++|+++|+.||.|..|.+.... ..|||-|.+.+.|+.|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 579999999999999999999999999999886542 3799999999999999886543 35666666665
Q ss_pred e
Q 011668 213 V 213 (480)
Q Consensus 213 ~ 213 (480)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.7e-05 Score=76.90 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=62.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHH
Q 011668 130 PNVSGDPYKTLFVARLSYETTESKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198 (480)
Q Consensus 130 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~ 198 (480)
.+..-+|.+|||||+||--++.++|..||. -||.|..+.|=+|++-+-++|-|-|+|.+..+..+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 344567889999999999999999999998 799999999999988889999999999999999999974
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.81 E-value=5.3e-05 Score=76.60 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+..+|-+.+||+.||+++|.+||+..-.|.. |.|+.+.. +.+.|-|||.|++.+.|+.||. -|...|+.+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 34568999999999999999999998755544 55666654 7788999999999999999998 466788999998876
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 44
No 106
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.69 E-value=3.5e-05 Score=76.51 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccc---CCC--CCc--------cceEEEEEechhhHHHHHHH
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTD---KET--NKP--------RGYAFIEYMHTRDMKAAYKQ 198 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d---~~t--~~~--------~g~afV~F~~~~~a~~A~~~ 198 (480)
...-+.+||.+.|||.+-.-+.|.+||+.||.|+.|.|+.. +.. +.+ +-+|||+|...+.|.+|.++
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33458899999999999999999999999999999999765 221 222 45799999999999999998
Q ss_pred cCCceeCCeEEEEe
Q 011668 199 ADGRKLDGRRVLVD 212 (480)
Q Consensus 199 l~g~~i~gr~l~V~ 212 (480)
|+.....-..|+|.
T Consensus 306 ~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 306 LNPEQNWRMGLKVK 319 (484)
T ss_pred hchhhhhhhcchhh
Confidence 86544333333333
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00043 Score=61.48 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 206 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g 206 (480)
...|.|.+||+..+|++|+.++.+.|.|+...+..| |++.|+|...++++.||..|....+..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 356999999999999999999999999999988776 589999999999999999998877643
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00015 Score=74.28 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=62.4
Q ss_pred CCEEEEcCCCCCCCH------HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEE
Q 011668 137 YKTLFVARLSYETTE------SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRV 209 (480)
Q Consensus 137 ~~~l~V~nL~~~~te------~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l 209 (480)
-..|+|.|+|.--.. .-|..+|+++|+|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||+.|+ .+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 357999999864221 3467889999999999999888755 8999999999999999999999999986 4566
Q ss_pred EEee
Q 011668 210 LVDV 213 (480)
Q Consensus 210 ~V~~ 213 (480)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6654
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.60 E-value=3.4e-05 Score=72.04 Aligned_cols=73 Identities=21% Similarity=0.444 Sum_probs=58.2
Q ss_pred HHHHHHhh-cCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCCCCCCCCCCCCC
Q 011668 152 SKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLG 228 (480)
Q Consensus 152 ~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~~~~~~~~~~~g 228 (480)
++|...|+ +||+|..+.|..+.. -...|-+||.|...++|++|+..|||.+|.|++|.+++.. +..|..+.++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p---vT~~rea~C~ 156 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP---VTDFREAICG 156 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC---cCchhhhhhc
Confidence 34445555 899999998776643 5678999999999999999999999999999999999874 4555544443
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.58 E-value=5.4e-05 Score=70.49 Aligned_cols=72 Identities=13% Similarity=0.327 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCC--------CCccce----EEEEEechhhHHHHHHHcCCcee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET--------NKPRGY----AFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t--------~~~~g~----afV~F~~~~~a~~A~~~l~g~~i 204 (480)
+.+|||+|||+.+...-|++||+.||.|-.|.|.....+ |.+..+ |.|+|.+...|..+...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999988655443 333332 56999999999999999999999
Q ss_pred CCeE
Q 011668 205 DGRR 208 (480)
Q Consensus 205 ~gr~ 208 (480)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.49 E-value=0.0002 Score=70.87 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe-EEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-RVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr-~l~V~~ 213 (480)
+|+.+|++.|||+.+++++|..+|..-|-.+...... ++.+.+|++.|.+.++|..|+..|+++.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 5778999999999999999999999887554433322 33445999999999999999999999998765 899999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.36 E-value=0.00053 Score=71.96 Aligned_cols=75 Identities=20% Similarity=0.418 Sum_probs=64.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIK-RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
++|-|.|+|+.++-++|.+||.-|-.+- +|.|-.+ ..|.+.|-|.|.|++.++|..|..-|++..|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999996543 3434333 4589999999999999999999999999999999998865
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.35 E-value=0.00045 Score=49.61 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=42.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHH
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 196 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~ 196 (480)
+.|-|.|.++... +.|..+|..||+|..+.+.. ...+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688999997765 45666999999999988862 2348999999999999985
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.33 E-value=0.0014 Score=56.85 Aligned_cols=74 Identities=24% Similarity=0.431 Sum_probs=53.6
Q ss_pred CCCCCEEEEcCCC------CCCCH---HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 134 GDPYKTLFVARLS------YETTE---SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 134 ~~~~~~l~V~nL~------~~~te---~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
++|-.||.|.=+. ..+.+ .+|.+.|..||+|.-|+++.+ .-+|+|.+...|.+|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3455677776655 12332 367788999999988888753 56899999999999999 999999
Q ss_pred CCeEEEEeeecC
Q 011668 205 DGRRVLVDVERG 216 (480)
Q Consensus 205 ~gr~l~V~~a~~ 216 (480)
+|+.|+|.+..+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998654
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.29 E-value=0.0012 Score=64.74 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.+.+.|-+|... ++-+.|-.+|..||.|..|+++..+ .|-|+|++.+..+++.||..||+..|-|..|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 456789999999875 5667899999999999999998754 3789999999999999999999999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
+++...+
T Consensus 359 ~SkQ~~v 365 (494)
T KOG1456|consen 359 VSKQNFV 365 (494)
T ss_pred ecccccc
Confidence 9887544
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.0008 Score=69.80 Aligned_cols=63 Identities=22% Similarity=0.426 Sum_probs=51.3
Q ss_pred HHHHHhhcCCCeeEEEecccCC---CCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 153 KIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 153 ~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+|+..+++||.|..|.|+..-. ..-..|-.||+|.+.++|+.|++.|+|..|.++.|++.|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3455577899999999987622 22235778999999999999999999999999999988743
No 117
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.19 E-value=0.00042 Score=72.69 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+.-+|||+||...+..+-+..++..||.|..|..+. |||+.|..+..+..|+..|+-..++|..|.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 445899999999999999999999999998887653 9999999999999999999999999999888764
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0022 Score=52.43 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=51.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccC-------CCCCccceEEEEEechhhHHHHHHHcCCceeCCeE-E
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-------ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR-V 209 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-------~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~-l 209 (480)
..|.|-+.|+. ....|..+|++||+|.+..-+... ..........|+|.+..+|.+||. -||..|.|.. |
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 46888899987 556799999999999877411100 001123588999999999999999 7999998864 4
Q ss_pred EEeeec
Q 011668 210 LVDVER 215 (480)
Q Consensus 210 ~V~~a~ 215 (480)
-|.++.
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 466653
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.09 E-value=0.002 Score=63.18 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCCEEEEcCCC--CCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC--CeEEEE
Q 011668 136 PYKTLFVARLS--YETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD--GRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~--~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~--gr~l~V 211 (480)
+.+.|.++=|. +.+|.+-|..|...+|.|..|.|... +| --|.|||++.+.|++|...|||..|. -..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 45666665554 56899999999999999999988653 22 46999999999999999999999874 467999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
+||++.
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 999875
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.07 E-value=0.00076 Score=72.92 Aligned_cols=78 Identities=29% Similarity=0.489 Sum_probs=67.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC--eEEE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVL 210 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g--r~l~ 210 (480)
...+++.|||++|.+++....|..+|..||.|..|.+-. ...||||.|++...++.|+..|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678899999999999999999999999998877632 23599999999999999999999999986 5699
Q ss_pred EeeecC
Q 011668 211 VDVERG 216 (480)
Q Consensus 211 V~~a~~ 216 (480)
|.|+..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 999775
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0017 Score=66.41 Aligned_cols=63 Identities=24% Similarity=0.536 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCC--C-CCccc---eEEEEEechhhHHHHHHHc
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE--T-NKPRG---YAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~--t-~~~~g---~afV~F~~~~~a~~A~~~l 199 (480)
-.+.||||+||+.++|++|...|..||.|. |.++.... . -.++| |+|+.|+++..+..-|.++
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 357899999999999999999999999874 55552111 1 12356 9999999998887666543
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.01 E-value=0.00064 Score=66.72 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=67.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeeE--EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYG-PIKR--VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~--v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
...|-+.+||+..+.++|..||..|- .|.. |.++.+.. |.+.|-|||+|.+.+.|.+|....+++.+..+.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 45689999999999999999999886 3433 78887765 89999999999999999999999998888899998876
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.94 E-value=0.0021 Score=61.09 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCCc-cceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 152 SKIKREFESYGPIKRVRLVTDKETNKP-RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 152 ~~L~~~F~~~G~i~~v~i~~d~~t~~~-~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.++.+.+++||.|..|.|...+..... .--.||+|...++|.+|+..|||..|+|+.+...|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467778899999999887665432222 2347999999999999999999999999999877643
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.0006 Score=73.37 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=72.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
...|||.|+|+..|.++|..+|.++|.++.+.++..+. |+++|.|||.|.++.++..++..+++..+....+.|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 35699999999999999999999999999999888765 99999999999999999999998998888888888888665
No 125
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.70 E-value=0.0023 Score=64.67 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSYET-TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~~~-te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.|-|.-+++.. +-++|...|.+||+|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3455566666665 45789999999999999988554 2479999999999988877 79999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 63
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.53 E-value=0.00079 Score=72.81 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.|||+|||...+++.+|+..|..+|.|..|.|-.-+. +.-..|+||.|.+...+..|+..|.+..|....+++-+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 467999999999999999999999999999998865533 4445699999999999999999999998877777777764
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
+
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 3
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.47 E-value=0.013 Score=45.56 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=42.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG 201 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g 201 (480)
...||+ +|..+...+|.++|+.||.|. |.++.+ .-|||.+...+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 456677 999999999999999999984 555554 3799999999999999987753
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.00024 Score=76.37 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=59.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~ 205 (480)
+++||.||++.+.+++|...|..+|.|..+.|.....++..+|+|||+|...+.+.+||....++.++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57999999999999999999999998888877766677999999999999999999999865555444
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.42 E-value=0.0037 Score=58.54 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=62.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC----ceeCCeEEEEee
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG----RKLDGRRVLVDV 213 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g----~~i~gr~l~V~~ 213 (480)
..|||.||...++.+.|...|+.||.|....++.|-. ++..+-++|+|...-.+.+|+..++- ..+.+..+-|.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999998776666643 77888999999999999999887632 234555665554
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
...
T Consensus 111 ~eq 113 (275)
T KOG0115|consen 111 MEQ 113 (275)
T ss_pred hhc
Confidence 443
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.25 E-value=0.0033 Score=61.31 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=65.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEecccCC--CC-CccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 134 GDPYKTLFVARLSYETTESKIK---REFESYGPIKRVRLVTDKE--TN-KPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~--t~-~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
.....-+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .+ ....-+||+|...++|..||..++|..++|+
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 3344568999999887655543 6789999999888876552 11 1122379999999999999999999999999
Q ss_pred EEEEeeecCCCC
Q 011668 208 RVLVDVERGRTV 219 (480)
Q Consensus 208 ~l~V~~a~~~~~ 219 (480)
.|++.+...+..
T Consensus 154 ~lka~~gttkyc 165 (327)
T KOG2068|consen 154 ALKASLGTTKYC 165 (327)
T ss_pred hhHHhhCCCcch
Confidence 988888766543
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.03 E-value=0.005 Score=61.33 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=57.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCc-eeCCeEEEEeee
Q 011668 138 KTLFVARLSYETTESKIKREFESY--GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR-KLDGRRVLVDVE 214 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~-~i~gr~l~V~~a 214 (480)
..|||+||.+.++..+|..+|... |--..+ |+. .||+||.+.+...|.+|++.|+|. .+.|+.+.|.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 369999999999999999999754 111111 221 379999999999999999999996 489999999987
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
.++
T Consensus 74 v~k 76 (584)
T KOG2193|consen 74 VPK 76 (584)
T ss_pred hhH
Confidence 654
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.90 E-value=0.0065 Score=64.10 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+..|||..||..+++..+..+|...-.|+. |.|..- -++...+.|||+|..++++..|+..-+.+.++.+.|.|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3578999999999999999999998877877 555443 35778899999999999998888877777788899999754
Q ss_pred c
Q 011668 215 R 215 (480)
Q Consensus 215 ~ 215 (480)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 3
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.71 E-value=0.048 Score=46.79 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=57.4
Q ss_pred CCCCCCCEEEEcCCCCCCC----HHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 132 VSGDPYKTLFVARLSYETT----ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~t----e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
...+|-.||.|.=|..++. ...|...++.||+|.+|.++. +--|.|.|.+..+|-.|+.++.. ..-|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 3455778899986665553 234566678999999998753 23799999999999999998875 56777
Q ss_pred EEEEeeec
Q 011668 208 RVLVDVER 215 (480)
Q Consensus 208 ~l~V~~a~ 215 (480)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 78887754
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.62 E-value=0.025 Score=51.48 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEE--ecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC----
Q 011668 137 YKTLFVARLSYETTESKIKREFES-YGPI---KRVR--LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG---- 206 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~-~G~i---~~v~--i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g---- 206 (480)
...|.|.+||+++|++++.+.+.. ++.. ..+. +...........-|||.|.+.+++...+..++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999987776 6655 3333 11111111123568999999999999999999977632
Q ss_pred -eEEEEeeecCCC
Q 011668 207 -RRVLVDVERGRT 218 (480)
Q Consensus 207 -r~l~V~~a~~~~ 218 (480)
....|++|.-..
T Consensus 87 ~~~~~VE~Apyqk 99 (176)
T PF03467_consen 87 EYPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEEE-SS--
T ss_pred CcceeEEEcchhc
Confidence 346677775433
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.35 E-value=0.074 Score=39.25 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc
Q 011668 138 KTLFVARLSYETTESKIKREFESY---GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~---G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
..|+|.||. +++.++|+.+|..| .....|.++-|. -|=|.|.+.+.|..||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999997 47778899999988 135578888774 5889999999999999765
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.28 E-value=0.044 Score=54.22 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=56.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 138 KTLFVARLSYETTESKIKREFESY----GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
-.|-+.+||+++++.++.+||..- |.+..|.++..+ .|+..|-|||.|..+++|..||.. |...|+-+.|.|--
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 456778999999999999999632 234456555544 388899999999999999999984 55556666665543
No 137
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.02 E-value=0.03 Score=57.83 Aligned_cols=71 Identities=13% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC--ceeCCeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~--~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g--~~i~gr~l~V 211 (480)
..|.|+|.-||..+-.++|+.||.. |-.+++|.+..+- -=||+|++..+|+.|+..|.- .+|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3577899999999999999999965 7888899886542 359999999999999876643 3466666554
Q ss_pred ee
Q 011668 212 DV 213 (480)
Q Consensus 212 ~~ 213 (480)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.97 E-value=0.2 Score=41.67 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=50.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 206 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g 206 (480)
.+..+.+...|+.++-+.|..+.+.+- .|..++|+.+.. .++-.++|.|.+.+.|......+||..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555555666666667766666654 677888887643 245578999999999999999999998753
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.62 E-value=0.057 Score=58.54 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce--eCCeEEEEeeec
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK--LDGRRVLVDVER 215 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~--i~gr~l~V~~a~ 215 (480)
.+.++.|.+-..+-..|..+|..||.|..++.+.+- ..|.|+|...+.|..|+.+|+|.. +.|.+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 356777888888889999999999999999887764 389999999999999999999987 468889999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
..
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 54
No 140
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.78 Score=45.92 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEecccCCCCCccceEEEEEechhhHHHHHHH
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGP-IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~-i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~ 198 (480)
-..+|-|-|+|.....++|...|+.|+. -..|.|+-+. +||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4578999999999999999999999973 4567777653 899999999999999883
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.054 Score=56.20 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee---C-CeEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---D-GRRVL 210 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i---~-gr~l~ 210 (480)
+-+++.|.|++...|...|...-++ .|.-..+.++.|-.+..+.|||||-|.+.+++..+.+++||+.+ + .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 4567888898888777776666543 57767788888888888899999999999999999999999864 3 45566
Q ss_pred Eeeec
Q 011668 211 VDVER 215 (480)
Q Consensus 211 V~~a~ 215 (480)
|.||.
T Consensus 467 itYAr 471 (549)
T KOG4660|consen 467 ITYAR 471 (549)
T ss_pred eehhh
Confidence 66654
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.91 E-value=0.31 Score=37.47 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 147 YETTESKIKREFESYG-----PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 147 ~~~te~~L~~~F~~~G-----~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..++..+|..+|...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888888887764 455677754 389998865 4788999999999999999999875
No 143
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=0.2 Score=48.21 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=50.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE-EEeee
Q 011668 140 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV-LVDVE 214 (480)
Q Consensus 140 l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l-~V~~a 214 (480)
|-|-++++. .-..|..+|++||+|+..... ..-.+-+|.|.+..+|.+||. -||..|+|-.+ -|.-+
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 555567765 346788999999999776543 223588999999999999999 69999988653 34443
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.80 E-value=0.067 Score=52.51 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..+++||+++.+.+.+.++..+|..+|.+..+.+........+++|++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988888777766678889999999999999999999544457777777666655
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 145
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.75 E-value=0.23 Score=45.42 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=45.6
Q ss_pred CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC--CceeCCeEEEEeeecCC
Q 011668 150 TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVLVDVERGR 217 (480)
Q Consensus 150 te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~--g~~i~gr~l~V~~a~~~ 217 (480)
....|..+|..|+.+..+.++.. -+=..|.|.+.+.|..|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888776542 2457899999999999999999 99999999999998643
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.05 E-value=0.29 Score=49.77 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 206 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g 206 (480)
.+.|+|-.+|..+|--+|..|+..|- .|..|.|+.+... +.-.++|.|.+.++|...+..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999987764 7889999986432 23357899999999999999999998754
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.53 Score=49.32 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=61.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEecccC----------CCCC---------------------
Q 011668 134 GDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRVRLVTDK----------ETNK--------------------- 177 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~i~~v~i~~d~----------~t~~--------------------- 177 (480)
+.+++.|-|.||.|. +...+|..+|+.| |.|.+|.|..-. .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 557889999999997 6778999999877 588888764321 1122
Q ss_pred ---------------c-cceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 178 ---------------P-RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 178 ---------------~-~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
. .-||.|+|.+.+.|.+.+..++|..|..-.+.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0 13789999999999999999999999766555554
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.58 E-value=0.94 Score=33.96 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 148 ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 148 ~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
.++-++|+..|..|+-. .|..+. .|| ||.|.+..+|+.|+...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999732 233333 134 89999999999999999999988887765
No 149
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.39 E-value=0.28 Score=47.76 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=5.1
Q ss_pred HHHHHHhhcC
Q 011668 152 SKIKREFESY 161 (480)
Q Consensus 152 ~~L~~~F~~~ 161 (480)
.+|...|+.|
T Consensus 172 ~dLw~WyEpy 181 (453)
T KOG2888|consen 172 ADLWDWYEPY 181 (453)
T ss_pred hHHHHHhhhh
Confidence 4455555554
No 150
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.23 E-value=0.16 Score=47.75 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=52.2
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 138 KTLFVARLSYETTESK-I--KREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~-L--~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..+|++|+-..+..+- | ...|+.+-.+...+++.+.. +...+++|+.|........+...-++..|+-..|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4577777776666554 3 67777777777677776654 667899999999888777777767777777666444
No 151
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.49 E-value=0.5 Score=46.04 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=6.1
Q ss_pred CHHHHHHHhh
Q 011668 150 TESKIKREFE 159 (480)
Q Consensus 150 te~~L~~~F~ 159 (480)
.-+-|..||.
T Consensus 128 AyCLLYklft 137 (453)
T KOG2888|consen 128 AYCLLYKLFT 137 (453)
T ss_pred HHHHHHHHHH
Confidence 4456777764
No 152
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=3.2 Score=41.78 Aligned_cols=36 Identities=25% Similarity=0.632 Sum_probs=28.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEe
Q 011668 134 GDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRVRL 169 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~i~~v~i 169 (480)
+.+++.|-|-||.|. +...+|..+|+.| |.|..|.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 668889999999996 6778898888876 56666654
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.16 E-value=0.096 Score=52.53 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec-ccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLV-TDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~-~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.|.|.|||+...|+.|..++.+||.|..|..+ .+.. ....-|+|...+.+..||..|+|..|....++|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 3568999999999999999999999999988763 2222 2345578999999999999999999999999998743
No 154
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.09 E-value=21 Score=39.27 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHhhcCCCe-----eEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 147 YETTESKIKREFESYGPI-----KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 147 ~~~te~~L~~~F~~~G~i-----~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..++...|..++..-+.| -.|.|.. .|.||+... ..+...+..|++..|.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 357778888887765544 3444532 489999864 457888888999999999999998753
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.06 E-value=2 Score=38.62 Aligned_cols=75 Identities=8% Similarity=0.087 Sum_probs=54.7
Q ss_pred CCCEEEEcCCCCCCCH-----HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe-EE
Q 011668 136 PYKTLFVARLSYETTE-----SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-RV 209 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te-----~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr-~l 209 (480)
-.++|++++|+..+-. .....+|.+|-+...+.++. +.++.-|.|.+.+.|..|...+++..|.|. .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3457899999876532 23456666666554444433 235667899999999999999999999998 88
Q ss_pred EEeeecC
Q 011668 210 LVDVERG 216 (480)
Q Consensus 210 ~V~~a~~ 216 (480)
++.|+..
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 8888775
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.30 E-value=7.5 Score=37.41 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=35.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEecccCCCCCccceEEEEEechh
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHTR 190 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i-~~v~i~~d~~t~~~~g~afV~F~~~~ 190 (480)
+-|||+||+.++.-.+|+..+.+.|.+ ..+.| ..+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 459999999999999999999888743 33433 223578999997653
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.78 E-value=0.52 Score=43.51 Aligned_cols=66 Identities=27% Similarity=0.430 Sum_probs=56.2
Q ss_pred CCEEEEcC----CCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 137 YKTLFVAR----LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 137 ~~~l~V~n----L~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
..+++.|| |...++++.+...|+..|.|..+.+..+.. |.+..|+||++.-..+.-.|+....+..
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 35788888 888899999999999999999999988765 8889999999988888888887666544
No 158
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.94 E-value=5.8 Score=29.88 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=46.1
Q ss_pred HHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 152 SKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 152 ~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+|.+.|...| .|..|..+....+..+...-||+.....+... .|+=..|+|..|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899988 78888888888877777888898877654444 345567889998887543
No 159
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.31 E-value=0.42 Score=49.76 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
..|+|||.||+++++-.+|..++..+--+..+.+.....-....-++.|+|.---.+..|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45789999999999999999999988666566554333223345678999998888888888899887755444
No 160
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.80 E-value=9.9 Score=28.67 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=45.5
Q ss_pred HHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 152 SKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 152 ~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
++|.+.|...| .|..|.-+....+..+....||++....+...+ ++=..|++..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 46788888888 788888887776777778889998876654443 44467888888888654
No 161
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.34 E-value=5.7 Score=33.42 Aligned_cols=56 Identities=18% Similarity=0.426 Sum_probs=31.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEech-hhHHHHHH
Q 011668 139 TLFVARLSYE---------TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT-RDMKAAYK 197 (480)
Q Consensus 139 ~l~V~nL~~~---------~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~-~~a~~A~~ 197 (480)
+++|.|++.. ++.+.|.+.|..|..+. |..+.+.. ...|+++|+|... .....|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 6778888653 35578999999998774 55555543 4578999999754 44556655
No 162
>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function of the domain is not known.
Probab=70.32 E-value=2.9 Score=33.98 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=2.2
Q ss_pred cchhhh
Q 011668 466 ESRDKE 471 (480)
Q Consensus 466 ~~~~~~ 471 (480)
++|+++
T Consensus 88 R~RdRd 93 (97)
T PF12871_consen 88 RSRDRD 93 (97)
T ss_pred cccccc
Confidence 333333
No 163
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.27 E-value=13 Score=36.23 Aligned_cols=79 Identities=13% Similarity=0.292 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccC-------CCCCccceEEEEEechhhHHHHHH----HcCC--ce
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-------ETNKPRGYAFIEYMHTRDMKAAYK----QADG--RK 203 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-------~t~~~~g~afV~F~~~~~a~~A~~----~l~g--~~ 203 (480)
++.|.+.||...++--.+...|.+||.|++|.++.+. ...+...-+.+.|-+.+.|...+. .|.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999998765 112334567899999888776542 2221 23
Q ss_pred eCCeEEEEeeec
Q 011668 204 LDGRRVLVDVER 215 (480)
Q Consensus 204 i~gr~l~V~~a~ 215 (480)
|....|.|.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566667766644
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=62.93 E-value=8.5 Score=38.75 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=49.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCC--CCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t--~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
-+.|.|-+||+..++.+|.+-+..|- .|....+...... ....++|||.|...+++......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35789999999999999988887765 3333333321111 12257899999999999888888999775
No 165
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=62.53 E-value=9.3 Score=35.96 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=44.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHH
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~ 197 (480)
......++++|++..++...+..+|..+|.|..+.+...........+.++.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3456789999999999999999999999999777776554433344444444444444444433
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=61.26 E-value=77 Score=31.55 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEE--EEechhhHHHHHHHcCC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFI--EYMHTRDMKAAYKQADG 201 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV--~F~~~~~a~~A~~~l~g 201 (480)
..+|-|..+ ..++.|..|..+++ +..++|..-...|+. .|.+| .|.+.++|..||..|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 456766664 35777888887775 344544443333433 45544 78999999999988754
No 167
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.85 E-value=16 Score=41.91 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..++++|--+-..+..+.|..+.+.|+...++....|+.+ -.|-+.|- +-.+.+.|+.|...+.+-..++|.+
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~Dkrs----~lgalkyl-PhavlkLLeNmP~pWe~~~evkvly 143 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVDKRS----YLGALKYL-PHAVLKLLENMPSPWEDVSEVKVLY 143 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhhhHh----hhhhhhhc-hHHHHHHHhcCCChHhhhheeeEEe
Confidence 3457888878788888899999888887766655444320 01122221 2344455555544444444444443
No 168
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=57.24 E-value=99 Score=34.59 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=7.2
Q ss_pred CCEEEEcCCCC
Q 011668 137 YKTLFVARLSY 147 (480)
Q Consensus 137 ~~~l~V~nL~~ 147 (480)
...+|+|++..
T Consensus 145 ~qR~f~gvvtk 155 (1194)
T KOG4246|consen 145 PQRRFAGVVTK 155 (1194)
T ss_pred cceeeehhhhh
Confidence 35688887654
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.49 E-value=18 Score=34.78 Aligned_cols=67 Identities=24% Similarity=0.542 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEec-ccC----CCCCc-----cceEE---------EE
Q 011668 137 YKTLFVARLSYE------------TTESKIKREFESYGPIKRVRLV-TDK----ETNKP-----RGYAF---------IE 185 (480)
Q Consensus 137 ~~~l~V~nL~~~------------~te~~L~~~F~~~G~i~~v~i~-~d~----~t~~~-----~g~af---------V~ 185 (480)
.-|||+.+||-. -++.-|...|+.||.|..|.|+ +|+ .||+. .||+| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888742 2467799999999999988874 333 24444 34433 44
Q ss_pred EechhhHHHHHHHcCCce
Q 011668 186 YMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 186 F~~~~~a~~A~~~l~g~~ 203 (480)
|...-....|+..|.|..
T Consensus 229 fmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHhHHHHHHHHhcch
Confidence 444444556666666654
No 170
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=52.19 E-value=11 Score=41.39 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=9.4
Q ss_pred EEEEcCCCCCCCH----HHHHHHhhc
Q 011668 139 TLFVARLSYETTE----SKIKREFES 160 (480)
Q Consensus 139 ~l~V~nL~~~~te----~~L~~~F~~ 160 (480)
|+|---+.+.|++ +.+.+.|.-
T Consensus 387 tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 387 TVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred chhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 4554444443333 344444543
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.42 E-value=37 Score=25.04 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCeeEEEe
Q 011668 152 SKIKREFESYGPIKRVRL 169 (480)
Q Consensus 152 ~~L~~~F~~~G~i~~v~i 169 (480)
.+|+++|+.+|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976554
No 172
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=3.2 Score=42.21 Aligned_cols=79 Identities=5% Similarity=-0.158 Sum_probs=60.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
...|+..|+..+++.+|..+|.-||.|.-+.+......+.....+||...+ ..+..||..+.-..+.|-.+.|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 457888999999999999999999999887765544445566678887664 4566777766667778888888887653
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.95 E-value=28 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRV 167 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v 167 (480)
...+||+-|||..+|++.|..+.+++|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34589999999999999999999999966554
No 174
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.54 E-value=39 Score=26.76 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEe
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~ 187 (480)
.-|||||++..+-+.-...+...++.-. +.++... ....||+|-++-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEcc--CCCCCEEEEEeC
Confidence 4699999999887775555555544332 2233322 226789998873
No 175
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=41.83 E-value=14 Score=39.88 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=55.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.+||+-|-....+..-+..+|..+++++..+++.....+...+-+|++|.....+..|.. |.+..+....|+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 378888877777778888889999998888887766667777789999999998877765 555555544443
No 176
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=38.88 E-value=79 Score=33.21 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.2
Q ss_pred CCHHHHHHHhh
Q 011668 149 TTESKIKREFE 159 (480)
Q Consensus 149 ~te~~L~~~F~ 159 (480)
+....|..+|+
T Consensus 318 ~D~~r~~~LFE 328 (817)
T KOG1925|consen 318 VDTARLEHLFE 328 (817)
T ss_pred ecHHHHHHHHH
Confidence 34444555554
No 177
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=35.30 E-value=30 Score=36.33 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=11.3
Q ss_pred ChhhhccCCCCCCCCCCCCC
Q 011668 43 TANLLKLFEPRAPLEYKPPP 62 (480)
Q Consensus 43 pp~~~~lf~p~pp~~~~pp~ 62 (480)
..+++.+|-...-|.++|++
T Consensus 70 ~~n~idrFDvRAhLdhi~~v 89 (653)
T KOG2548|consen 70 STNQIDRFDVRAHLDHIPEV 89 (653)
T ss_pred ccchhhhhhhHhhhccCCcc
Confidence 34556666665555555543
No 178
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=35.15 E-value=24 Score=37.89 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=5.6
Q ss_pred cCCCccccccCCC
Q 011668 421 YDHHENYEHHRGY 433 (480)
Q Consensus 421 ~~~~~~~~~~~~~ 433 (480)
++....+.++|.+
T Consensus 764 ~s~~k~~rhhRS~ 776 (878)
T KOG1847|consen 764 YSKDKRSRHHRSR 776 (878)
T ss_pred hccccccccccCc
Confidence 3333444444444
No 179
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=34.24 E-value=54 Score=30.96 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCCC----HHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEE-echhhHHHHHHHcCCceeCCeEEE
Q 011668 137 YKTLFVARLSYETT----ESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEY-MHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 137 ~~~l~V~nL~~~~t----e~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F-~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
...||||+|....- -+.|...+-+.+ .|+.+.+- ....|||.-.. .+.++...+|+.+.+..+....+-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~-----Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLR-----SSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecc-----ccccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 46799999876532 244444444433 33333322 22345554333 366677777776655555545555
Q ss_pred Eeeec
Q 011668 211 VDVER 215 (480)
Q Consensus 211 V~~a~ 215 (480)
|-.+.
T Consensus 112 ~GhST 116 (299)
T KOG4840|consen 112 VGHST 116 (299)
T ss_pred EecCc
Confidence 55543
No 180
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.27 E-value=1.6e+02 Score=20.91 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEech----hhHHHHHHH
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT----RDMKAAYKQ 198 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~----~~a~~A~~~ 198 (480)
||.|.||.-......|...+...-.|..+.+-.. .+-+-|.|... +.+..+|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788888877778899999999888888877432 24778888644 455566654
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.02 E-value=81 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.5
Q ss_pred CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 163 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 163 ~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
.|.++..+ ...+||-|||=.+..++..|+..+.+...
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 45555554 34689999999999999999988776543
No 182
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=31.54 E-value=5.2e+02 Score=25.53 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=22.4
Q ss_pred hHHHHHHHhhcCCCCCC-----CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC
Q 011668 114 AEKAAEELKKYDPHNDP-----NVSGDPYKTLFVARLSYETTESKIKREFESYG 162 (480)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G 162 (480)
..++...+..|++.... .+++.+--..||- ...+-+|...|...+
T Consensus 115 EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIe----ye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 115 ESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIE----YEHERDMKAAYKDAD 164 (335)
T ss_pred HHHHHHHHHhcCcceeEEEeeecccCCccceEEEE----eccHHHHHHHHHhcc
Confidence 34555666666665421 1222222333332 235667777777655
No 183
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.05 E-value=67 Score=26.08 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=28.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEech
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 189 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~ 189 (480)
.-||||+++..+-+.-...+-+.++.- .+.++. ..+. ..||+|.++-..
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~-~~~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAW-ATNT-ESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEE-cCCC-CCCcEEEecCCC
Confidence 469999999887765444444545432 222332 1223 339999887654
No 184
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=30.80 E-value=23 Score=34.73 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhhcCCCeeEEE
Q 011668 148 ETTESKIKREFESYGPIKRVR 168 (480)
Q Consensus 148 ~~te~~L~~~F~~~G~i~~v~ 168 (480)
.++|++|.-+..+||.|..|.
T Consensus 374 ~s~EedLefyi~kcg~Itgi~ 394 (438)
T KOG3861|consen 374 QSKEEDLEFYIKKCGRITGIV 394 (438)
T ss_pred cCccHHHHHHHHHhhhheeee
Confidence 678889999999999997763
No 185
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.15 E-value=2e+02 Score=22.67 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=38.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHH
Q 011668 140 LFVARLSYETTESKIKREFES-YG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 198 (480)
Q Consensus 140 l~V~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~ 198 (480)
.|+-.+...++..+|...++. || .|..|..+.-+. ..-=|||.|.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 444446778999999999987 66 666666544321 223599999888877766443
No 186
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.84 E-value=1.6e+02 Score=23.45 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc
Q 011668 151 ESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 151 e~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
.+.+.++++.+| +|..+.+.. |..-.+..+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 356777888776 888888764 545567788888888777665433
No 187
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.56 E-value=2.4e+02 Score=22.74 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCCHHHHHHH-------hhcC-CCeeEEEeccc-----CCCCCccc-eEEEEEechhhHHHHHH
Q 011668 139 TLFVARLSYETTESKIKRE-------FESY-GPIKRVRLVTD-----KETNKPRG-YAFIEYMHTRDMKAAYK 197 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~-------F~~~-G~i~~v~i~~d-----~~t~~~~g-~afV~F~~~~~a~~A~~ 197 (480)
++|| |.+.++++++..+ +... |+|..+..+.. +..+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 5666 4566677665555 4343 46666543211 12244556 57788887777666665
No 188
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=27.33 E-value=41 Score=26.69 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=25.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEecccCCCCCccceEEEEEec
Q 011668 138 KTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMH 188 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~t~~~~g~afV~F~~ 188 (480)
.-||||+++..+-+.-...+-+. .+.- .+.++.. +....||+|-++-.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 46999999988765433333333 2221 2222221 12345798887754
No 189
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=27.06 E-value=1.8e+02 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=26.7
Q ss_pred eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 164 IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 164 i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
|.+|.++.. ..||.||+....+++..++..+.+..
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 666666542 67999999998888888888777643
No 190
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.88 E-value=28 Score=34.80 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCc
Q 011668 151 ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 202 (480)
Q Consensus 151 e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~ 202 (480)
...|-+++.+.|.|..-.+.. -.+.|.+||.+-.+++++.+++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~r----tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYR----TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHH----HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 356778888889876555443 234689999999999999999998875
No 191
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.14 E-value=3e+02 Score=21.09 Aligned_cols=63 Identities=6% Similarity=0.098 Sum_probs=39.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-------CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 139 TLFVARLSYETTESKIKREFES-------YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~-------~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
.|..-+||..+|.++|..+..+ +..|.-+.-.... ...+.||+.+=.+.+.+.++-.. .|..+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 3667789988999998877654 3334333333322 22356787777788877777664 35543
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.08 E-value=88 Score=30.28 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRL 169 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i 169 (480)
.....|+|||+++|..-|..++...-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 346889999999999999999877655434443
No 193
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.46 E-value=1.8e+02 Score=26.48 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhcC-CCeeEEEecccCC-CCCccceEEEEEechhhHHHHHHH
Q 011668 149 TTESKIKREFESY-GPIKRVRLVTDKE-TNKPRGYAFIEYMHTRDMKAAYKQ 198 (480)
Q Consensus 149 ~te~~L~~~F~~~-G~i~~v~i~~d~~-t~~~~g~afV~F~~~~~a~~A~~~ 198 (480)
+|+++|..+.... |.+..|.+-.... ....+|-.||+|.+.+.|.+++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5666666655433 5777776643221 125678899999999999988773
No 194
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.72 E-value=4.8e+02 Score=22.25 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEEcCCCCC---CCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 139 TLFVARLSYE---TTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 139 ~l~V~nL~~~---~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.|.|.+.... .+-..|.+++..-| .++.+..-. +-..|.|.+.++-.+|...|....-++..|-+.++
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5777766333 46678888888887 566665432 26789999999999998888765555555655555
Q ss_pred c
Q 011668 215 R 215 (480)
Q Consensus 215 ~ 215 (480)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 195
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=35 Score=34.70 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=46.3
Q ss_pred CEEEEcCCCCCCCH--------HHHHHHhhc--CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHH
Q 011668 138 KTLFVARLSYETTE--------SKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197 (480)
Q Consensus 138 ~~l~V~nL~~~~te--------~~L~~~F~~--~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~ 197 (480)
..+|+.++....+. ++|..+|.. .+.+..|.+-.+.....+.|-.||+|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45676666655443 488999988 6778888877777667788889999999999998874
No 196
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.80 E-value=2.1e+02 Score=24.12 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=37.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEech--------hhHHHHHHHcCCceeCCeEEE
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT--------RDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~--------~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.||||++|.....+.|... .+..|..+.-... .....++-|+.|.-. .....|+..++...-.|..|.
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 5999999977654444432 3345554432211 112345555555422 122445555554445666777
Q ss_pred Eeeec
Q 011668 211 VDVER 215 (480)
Q Consensus 211 V~~a~ 215 (480)
|-...
T Consensus 83 VHC~~ 87 (138)
T smart00195 83 VHCQA 87 (138)
T ss_pred EECCC
Confidence 76554
No 197
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.44 E-value=49 Score=23.85 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=20.0
Q ss_pred ccceEEEEEec-hhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 178 PRGYAFIEYMH-TRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 178 ~~g~afV~F~~-~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+|||||...+ ..+.--.-..|++. ++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 57899999887 44433334446544 455566666554
No 198
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.95 E-value=1.8e+02 Score=26.55 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=38.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCC-CCccceEEEEEechhhHHHHHHHc
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
.=||+|.+...+-..|.+.|...|.- |.++..+.+ ..+.++-+|.|.+.+++..++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~--V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAE--VTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-E--EEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCE--EEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 56899999998889999999988852 333333321 225588899999999988887753
No 199
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.77 E-value=1.4e+02 Score=24.11 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEe--cccCCCCCccceEEEEEe
Q 011668 139 TLFVARLSYETTESKIK---REFESYGPIKRVRL--VTDKETNKPRGYAFIEYM 187 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~---~~F~~~G~i~~v~i--~~d~~t~~~~g~afV~F~ 187 (480)
..|+.|||..+.+.++. .+|..++.-..|.+ ......+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 57899999999887655 44555553334433 112334556677665544
No 200
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=20.72 E-value=54 Score=34.54 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=7.8
Q ss_pred eEEEEEechhhHHHHHH
Q 011668 181 YAFIEYMHTRDMKAAYK 197 (480)
Q Consensus 181 ~afV~F~~~~~a~~A~~ 197 (480)
||+..-.+.++|.++.+
T Consensus 229 fv~mlkkdkeea~a~k~ 245 (653)
T KOG2548|consen 229 FVYMLKKDKEEAKAQKE 245 (653)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 33333345555554433
No 201
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=20.63 E-value=3.7e+02 Score=29.00 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..-.|.-|||.+. |.|..+--+.. .--...|-| +.|+++++|..||. +|..-.|-.|+|.+.-
T Consensus 354 Ggl~iL~GNLaP~-------------GaViK~sa~~~-~~~~~~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeG 416 (535)
T TIGR00110 354 GGLAILKGNLAPN-------------GAVVKIAGVDE-DMTKFEGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEG 416 (535)
T ss_pred CCEEEEecCCCcC-------------CeEEEecccCC-cccEEEEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCC
Confidence 3456777888764 23333222211 012234555 46999999999986 4666778899999887
Q ss_pred CCCCCCCC
Q 011668 216 GRTVPNWR 223 (480)
Q Consensus 216 ~~~~~~~~ 223 (480)
++..|++.
T Consensus 417 PkGgPGMp 424 (535)
T TIGR00110 417 PKGGPGMP 424 (535)
T ss_pred CCCCCChh
Confidence 66555543
No 202
>PF14893 PNMA: PNMA
Probab=20.61 E-value=74 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=21.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc
Q 011668 135 DPYKTLFVARLSYETTESKIKREFES 160 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~ 160 (480)
++.+.|.|.+||.++++.+|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 35678999999999999998887654
No 203
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=20.50 E-value=4e+02 Score=21.31 Aligned_cols=54 Identities=6% Similarity=0.151 Sum_probs=38.7
Q ss_pred cCCCCCCCHHHHHHH----------hhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC
Q 011668 143 ARLSYETTESKIKRE----------FESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200 (480)
Q Consensus 143 ~nL~~~~te~~L~~~----------F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~ 200 (480)
-+||..++.+++..+ +..-|.+..+.-+. |....++++.-.+.++....|..|-
T Consensus 9 v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~----G~~~n~~Ifdv~d~~eLh~lL~sLP 72 (91)
T PF02426_consen 9 VNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVV----GRYANVSIFDVEDNDELHELLSSLP 72 (91)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEec----CCcceEEEEECCCHHHHHHHHHhCC
Confidence 368888887766554 44568888776543 6667788888888888887776554
Done!