Query 011668
Match_columns 480
No_of_seqs 523 out of 3299
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 100.0 1.8E-40 6.2E-45 342.9 29.8 201 40-243 3-208 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 9.7E-21 3.3E-25 155.1 11.0 81 136-216 18-98 (99)
3 2cqd_A RNA-binding region cont 99.8 2.8E-19 9.4E-24 150.8 14.5 89 132-221 12-100 (116)
4 3s8s_A Histone-lysine N-methyl 99.8 9E-20 3.1E-24 152.3 11.3 82 135-216 4-85 (110)
5 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-19 4.9E-24 157.5 12.9 87 134-220 39-125 (139)
6 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.6E-24 148.0 12.1 86 133-218 9-94 (103)
7 2dnz_A Probable RNA-binding pr 99.8 2.3E-19 7.8E-24 145.5 11.4 85 135-219 3-87 (95)
8 2cq0_A Eukaryotic translation 99.8 3E-19 1E-23 147.2 11.9 89 131-219 9-97 (103)
9 2lxi_A RNA-binding protein 10; 99.8 7.5E-20 2.6E-24 147.4 7.8 82 137-218 1-84 (91)
10 2dgs_A DAZ-associated protein 99.8 4.7E-19 1.6E-23 144.9 12.6 85 134-219 7-91 (99)
11 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-19 1.1E-23 146.8 11.6 88 134-221 9-96 (102)
12 1whw_A Hypothetical protein ri 99.8 5.4E-19 1.8E-23 144.5 12.9 85 135-219 6-90 (99)
13 3ex7_B RNA-binding protein 8A; 99.8 1.8E-19 6.1E-24 154.2 10.4 86 135-220 20-105 (126)
14 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-19 1.2E-23 158.2 12.8 84 135-218 37-120 (156)
15 1x5u_A Splicing factor 3B subu 99.8 4.7E-19 1.6E-23 146.5 12.6 89 131-219 9-97 (105)
16 2lkz_A RNA-binding protein 5; 99.8 1.1E-19 3.9E-24 147.3 8.1 81 136-216 8-94 (95)
17 1x5t_A Splicing factor 3B subu 99.8 3.5E-19 1.2E-23 144.7 10.9 85 135-219 3-88 (96)
18 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-18 5.3E-23 145.9 14.8 87 133-219 11-97 (115)
19 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.3E-19 1.5E-23 141.4 10.7 82 136-217 5-86 (87)
20 2cpz_A CUG triplet repeat RNA- 99.8 5.6E-19 1.9E-23 148.6 11.8 86 134-219 22-107 (115)
21 2fy1_A RNA-binding motif prote 99.8 7.3E-19 2.5E-23 148.3 12.1 83 135-218 5-87 (116)
22 1x5s_A Cold-inducible RNA-bind 99.8 6.4E-19 2.2E-23 144.9 11.4 86 134-219 9-94 (102)
23 2x1f_A MRNA 3'-END-processing 99.8 7.3E-19 2.5E-23 143.0 11.6 83 136-218 1-83 (96)
24 2e5h_A Zinc finger CCHC-type a 99.8 8.9E-19 3E-23 141.7 12.0 84 132-215 11-94 (94)
25 2cqc_A Arginine/serine-rich sp 99.8 7.3E-19 2.5E-23 142.5 11.4 86 131-216 9-94 (95)
26 1x4h_A RNA-binding protein 28; 99.8 1.3E-18 4.5E-23 145.2 13.2 87 133-219 11-103 (111)
27 2cpf_A RNA binding motif prote 99.8 5.9E-19 2E-23 144.0 10.7 86 135-220 3-91 (98)
28 2cph_A RNA binding motif prote 99.8 1.1E-18 3.7E-23 144.7 12.4 87 133-219 11-99 (107)
29 2dng_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 143.8 12.3 85 133-219 11-95 (103)
30 3md1_A Nuclear and cytoplasmic 99.8 7.3E-19 2.5E-23 138.8 10.8 81 137-217 1-81 (83)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.5E-19 2.2E-23 139.7 10.5 81 135-215 5-85 (85)
32 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-18 4.8E-23 143.4 12.5 84 134-219 12-96 (104)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 9.2E-19 3.2E-23 145.0 11.4 87 132-218 8-97 (106)
34 2d9p_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 144.0 11.2 86 132-219 10-95 (103)
35 2do4_A Squamous cell carcinoma 99.8 1.7E-18 5.8E-23 141.8 12.2 84 134-218 14-97 (100)
36 1p27_B RNA-binding protein 8A; 99.8 6.7E-19 2.3E-23 145.8 9.8 84 135-218 21-104 (106)
37 2la6_A RNA-binding protein FUS 99.8 8.7E-19 3E-23 143.3 10.3 84 132-215 8-99 (99)
38 2cq3_A RNA-binding protein 9; 99.8 4.1E-18 1.4E-22 140.4 14.2 89 133-223 11-99 (103)
39 2cpe_A RNA-binding protein EWS 99.8 1.7E-18 5.7E-23 145.2 12.0 86 133-218 11-104 (113)
40 3p5t_L Cleavage and polyadenyl 99.8 2E-19 6.7E-24 144.6 5.6 82 138-219 2-85 (90)
41 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-18 5.4E-23 144.6 11.3 85 134-218 23-107 (110)
42 2dh8_A DAZ-associated protein 99.8 2E-18 6.8E-23 142.7 11.4 87 132-219 11-97 (105)
43 2dnh_A Bruno-like 5, RNA bindi 99.8 2.1E-18 7.1E-23 142.6 11.4 86 133-219 11-99 (105)
44 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4.3E-23 144.9 9.7 85 133-217 22-106 (108)
45 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.3E-23 142.3 9.6 84 134-217 6-94 (99)
46 1x4a_A Splicing factor, argini 99.8 5.8E-18 2E-22 141.0 13.6 83 133-218 18-100 (109)
47 3ulh_A THO complex subunit 4; 99.8 2.8E-18 9.5E-23 142.3 11.3 81 134-215 26-106 (107)
48 2khc_A Testis-specific RNP-typ 99.8 2.5E-18 8.6E-23 145.3 11.2 82 134-215 37-118 (118)
49 2dhg_A TRNA selenocysteine ass 99.8 1.9E-18 6.5E-23 142.6 10.2 84 134-218 6-91 (104)
50 2cpi_A CCR4-NOT transcription 99.8 2E-18 6.8E-23 144.4 10.5 90 131-220 9-104 (111)
51 3s7r_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 136.4 11.2 80 134-214 8-87 (87)
52 2do0_A HnRNP M, heterogeneous 99.8 1E-17 3.6E-22 140.5 14.8 84 133-217 11-94 (114)
53 3ns6_A Eukaryotic translation 99.8 4E-19 1.4E-23 145.8 5.9 81 136-216 5-92 (100)
54 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.4E-18 2.9E-22 138.5 13.9 84 133-218 11-94 (103)
55 2kxn_B Transformer-2 protein h 99.8 1.5E-18 5.2E-23 149.1 9.4 88 131-218 40-127 (129)
56 4f25_A Polyadenylate-binding p 99.8 2.2E-18 7.6E-23 145.1 10.2 80 137-218 5-84 (115)
57 2dgu_A Heterogeneous nuclear r 99.8 9.6E-18 3.3E-22 138.2 13.5 79 134-220 8-86 (103)
58 2dgx_A KIAA0430 protein; RRM d 99.8 6.4E-18 2.2E-22 137.4 12.0 81 136-219 8-92 (96)
59 2cq4_A RNA binding motif prote 99.8 2E-18 6.9E-23 145.0 9.3 80 137-217 25-104 (114)
60 4a8x_A RNA-binding protein wit 99.8 3.6E-18 1.2E-22 136.2 10.3 81 136-216 3-84 (88)
61 1sjq_A Polypyrimidine tract-bi 99.8 3.3E-18 1.1E-22 140.5 10.1 82 134-221 13-96 (105)
62 3ucg_A Polyadenylate-binding p 99.8 4.8E-18 1.7E-22 135.9 10.8 79 137-216 6-84 (89)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-17 4E-22 137.6 13.4 85 133-219 11-95 (103)
64 1x4b_A Heterogeneous nuclear r 99.7 2.1E-18 7.3E-23 145.3 9.1 83 136-219 26-108 (116)
65 2cqp_A RNA-binding protein 12; 99.7 2.4E-18 8.3E-23 140.3 9.1 83 134-216 12-94 (98)
66 2rs2_A Musashi-1, RNA-binding 99.7 4.6E-18 1.6E-22 141.7 10.8 84 134-218 22-105 (109)
67 2ywk_A Putative RNA-binding pr 99.7 4E-18 1.4E-22 138.1 10.1 81 134-215 13-93 (95)
68 3n9u_C Cleavage and polyadenyl 99.7 3.7E-18 1.3E-22 151.6 10.7 82 136-217 54-137 (156)
69 1x4c_A Splicing factor, argini 99.7 1.8E-17 6.3E-22 137.8 14.3 77 135-218 13-94 (108)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.5E-18 1.9E-22 152.0 11.2 85 134-218 69-153 (165)
71 2cq1_A PTB-like protein L; RRM 99.7 1.9E-17 6.4E-22 135.8 12.7 83 133-221 11-95 (101)
72 2dgw_A Probable RNA-binding pr 99.7 1.5E-17 5.3E-22 133.6 12.0 82 134-218 7-88 (91)
73 2m2b_A RNA-binding protein 10; 99.7 2.7E-18 9.2E-23 148.0 8.0 84 134-218 20-109 (131)
74 2err_A Ataxin-2-binding protei 99.7 9.1E-18 3.1E-22 139.9 10.9 86 131-218 23-108 (109)
75 1s79_A Lupus LA protein; RRM, 99.7 2.7E-18 9.3E-23 141.5 7.5 79 136-216 10-88 (103)
76 2dgv_A HnRNP M, heterogeneous 99.7 7.8E-18 2.7E-22 135.6 10.1 82 135-218 6-87 (92)
77 2kt5_A RNA and export factor-b 99.7 2E-17 6.7E-22 141.1 13.1 85 134-219 32-116 (124)
78 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2E-18 6.7E-23 141.6 6.5 82 134-217 16-98 (100)
79 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.6E-23 139.3 6.9 80 136-215 14-93 (95)
80 2a3j_A U1 small nuclear ribonu 99.7 7.9E-18 2.7E-22 143.9 10.1 81 134-217 26-110 (127)
81 2fc9_A NCL protein; structure 99.7 1.8E-17 6.1E-22 136.0 11.9 82 134-219 12-93 (101)
82 2nlw_A Eukaryotic translation 99.7 8.6E-18 2.9E-22 139.0 10.0 82 133-216 11-99 (105)
83 1x4e_A RNA binding motif, sing 99.7 1.3E-18 4.4E-23 138.1 4.7 81 135-215 3-83 (85)
84 2cpy_A RNA-binding protein 12; 99.7 2.3E-18 7.7E-23 144.8 6.4 83 134-218 12-95 (114)
85 2fc8_A NCL protein; structure 99.7 1.4E-17 4.9E-22 136.7 11.0 86 130-218 8-93 (102)
86 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 4E-22 142.4 10.8 79 138-217 37-115 (124)
87 1wez_A HnRNP H', FTP-3, hetero 99.7 7.1E-18 2.4E-22 138.8 9.0 83 133-218 11-93 (102)
88 2kn4_A Immunoglobulin G-bindin 99.7 2.3E-17 7.9E-22 146.7 13.0 85 134-218 67-151 (158)
89 2mss_A Protein (musashi1); RNA 99.7 3.4E-18 1.2E-22 132.2 6.4 75 139-214 1-75 (75)
90 2dis_A Unnamed protein product 99.7 1.7E-17 5.9E-22 138.0 11.2 85 135-219 6-94 (109)
91 1p1t_A Cleavage stimulation fa 99.7 4.8E-18 1.6E-22 140.1 7.5 83 136-218 7-89 (104)
92 3q2s_C Cleavage and polyadenyl 99.7 4.5E-18 1.5E-22 160.7 8.3 81 136-216 67-149 (229)
93 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-17 3.8E-22 131.4 9.1 74 136-215 6-79 (89)
94 3r27_A HnRNP L, heterogeneous 99.7 1.7E-17 5.9E-22 134.8 10.6 79 134-218 18-98 (100)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-17 7.7E-22 143.5 11.9 81 134-214 60-140 (140)
96 2dnq_A RNA-binding protein 4B; 99.7 2.4E-17 8.2E-22 132.3 10.9 78 134-219 5-82 (90)
97 1wg5_A Heterogeneous nuclear r 99.7 2.2E-17 7.7E-22 136.3 11.0 84 134-219 12-96 (104)
98 2cpx_A Hypothetical protein FL 99.7 4E-18 1.4E-22 143.3 6.5 86 134-219 22-107 (115)
99 1x4d_A Matrin 3; structural ge 99.7 1.6E-17 5.4E-22 136.2 9.8 80 132-217 10-92 (102)
100 2ad9_A Polypyrimidine tract-bi 99.7 2.2E-17 7.6E-22 138.9 10.6 83 133-221 27-111 (119)
101 2lea_A Serine/arginine-rich sp 99.7 5.5E-18 1.9E-22 146.8 7.0 87 133-219 43-129 (135)
102 2dgt_A RNA-binding protein 30; 99.7 6.7E-17 2.3E-21 130.2 12.7 78 133-218 6-83 (92)
103 2ki2_A SS-DNA binding protein 99.7 2.8E-18 9.5E-23 137.7 4.4 81 138-219 2-82 (90)
104 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.8E-18 2E-22 131.5 6.1 76 138-214 1-76 (77)
105 2lcw_A RNA-binding protein FUS 99.6 5.4E-19 1.8E-23 149.0 0.0 83 136-218 6-96 (116)
106 2jvr_A Nucleolar protein 3; RN 99.7 2.6E-17 8.9E-22 137.2 9.7 77 136-216 27-104 (111)
107 1why_A Hypothetical protein ri 99.7 5.2E-17 1.8E-21 132.2 11.4 79 134-218 14-94 (97)
108 1x4g_A Nucleolysin TIAR; struc 99.7 6.2E-17 2.1E-21 134.7 11.6 78 136-219 24-101 (109)
109 2cpd_A Apobec-1 stimulating pr 99.7 1.6E-16 5.4E-21 129.8 13.5 77 134-218 12-90 (99)
110 1x5o_A RNA binding motif, sing 99.7 3.9E-17 1.3E-21 137.0 10.1 82 134-216 22-111 (114)
111 1wex_A Hypothetical protein (r 99.7 6.6E-17 2.3E-21 133.3 11.1 80 134-219 12-93 (104)
112 2kvi_A Nuclear polyadenylated 99.7 2E-17 6.7E-22 134.5 7.7 79 134-220 7-86 (96)
113 2hgn_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 146.8 4.6 81 135-218 44-124 (139)
114 2db1_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 138.5 8.9 81 135-217 15-98 (118)
115 1fj7_A Nucleolin RBD1, protein 99.7 5.5E-18 1.9E-22 139.1 4.0 83 134-218 14-96 (101)
116 2xnq_A Nuclear polyadenylated 99.7 9E-17 3.1E-21 130.9 11.1 77 133-217 18-95 (97)
117 1nu4_A U1A RNA binding domain; 99.7 2.7E-17 9.3E-22 133.7 8.0 81 134-217 5-89 (97)
118 2cpj_A Non-POU domain-containi 99.7 9E-17 3.1E-21 131.3 11.0 79 134-218 12-90 (99)
119 1wel_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 142.9 5.5 82 135-217 23-104 (124)
120 2e5j_A Methenyltetrahydrofolat 99.7 4.3E-17 1.5E-21 132.7 8.8 79 134-217 16-94 (97)
121 2krb_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 130.7 5.9 72 138-211 2-80 (81)
122 3lqv_A PRE-mRNA branch site pr 99.7 6.1E-17 2.1E-21 136.0 9.8 80 134-216 5-84 (115)
123 2f3j_A RNA and export factor b 99.7 6.5E-17 2.2E-21 146.6 10.7 84 134-218 85-168 (177)
124 2jvo_A Nucleolar protein 3; nu 99.7 6.7E-17 2.3E-21 134.4 9.8 77 134-218 28-104 (108)
125 2cqh_A IGF-II mRNA-binding pro 99.7 5.6E-17 1.9E-21 130.9 9.0 77 135-218 6-84 (93)
126 1wf1_A RNA-binding protein RAL 99.7 1.4E-16 4.8E-21 132.8 11.7 74 136-217 26-100 (110)
127 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.4E-22 128.4 5.4 75 139-214 1-75 (75)
128 2ytc_A PRE-mRNA-splicing facto 99.7 1.2E-16 4E-21 126.6 10.6 76 134-215 9-85 (85)
129 1x4f_A Matrin 3; structural ge 99.7 6.9E-17 2.4E-21 134.4 9.5 82 134-221 22-106 (112)
130 2dnp_A RNA-binding protein 14; 99.7 1.8E-16 6.1E-21 127.1 11.5 76 134-217 6-81 (90)
131 2e5g_A U6 snRNA-specific termi 99.7 1.5E-16 5.2E-21 128.7 10.9 77 136-218 7-83 (94)
132 2dnn_A RNA-binding protein 12; 99.7 7.7E-17 2.6E-21 134.0 9.2 77 137-216 16-92 (109)
133 2la4_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 132.2 9.1 75 136-216 26-100 (101)
134 3beg_B Splicing factor, argini 99.7 5.1E-17 1.8E-21 136.7 8.2 74 136-216 15-93 (115)
135 2j8a_A Histone-lysine N-methyl 99.7 7.7E-17 2.6E-21 135.0 8.9 78 138-215 3-94 (136)
136 2hvz_A Splicing factor, argini 99.7 5.4E-17 1.8E-21 133.1 7.9 76 138-218 1-76 (101)
137 1fjc_A Nucleolin RBD2, protein 99.7 5.9E-17 2E-21 131.5 8.0 80 134-218 13-92 (96)
138 2hgl_A HNRPF protein, heteroge 99.7 4.3E-17 1.5E-21 140.9 7.6 80 135-216 42-124 (136)
139 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.8E-21 148.9 11.2 83 134-216 12-94 (213)
140 2lmi_A GRSF-1, G-rich sequence 99.7 3E-17 1E-21 136.3 5.7 81 134-216 8-91 (107)
141 1x5p_A Negative elongation fac 99.7 5.8E-16 2E-20 126.0 12.7 78 134-219 12-89 (97)
142 2cq2_A Hypothetical protein LO 99.7 2.4E-16 8.4E-21 131.2 10.5 80 133-218 21-107 (114)
143 2xs2_A Deleted in azoospermia- 99.7 1E-16 3.5E-21 131.7 7.6 79 136-217 8-86 (102)
144 1whx_A Hypothetical protein ri 99.7 2.5E-16 8.4E-21 131.6 9.7 77 136-218 9-85 (111)
145 3egn_A RNA-binding protein 40; 99.7 5.1E-17 1.7E-21 142.1 5.7 84 134-217 42-130 (143)
146 2e44_A Insulin-like growth fac 99.6 3.5E-16 1.2E-20 126.9 9.1 79 135-217 13-92 (96)
147 2i2y_A Fusion protein consists 99.6 3.3E-16 1.1E-20 138.0 9.6 79 134-217 70-148 (150)
148 2hgm_A HNRPF protein, heteroge 99.6 2.5E-16 8.4E-21 134.2 8.3 79 135-216 40-120 (126)
149 2dha_A FLJ20171 protein; RRM d 99.6 1.5E-16 5E-21 135.2 6.5 79 136-216 22-104 (123)
150 2qfj_A FBP-interacting repress 99.6 5.3E-16 1.8E-20 144.5 10.8 88 136-223 124-211 (216)
151 3md3_A Nuclear and cytoplasmic 99.6 1.2E-15 4.3E-20 135.6 12.1 83 133-215 83-165 (166)
152 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.8E-20 136.1 11.4 81 137-217 2-82 (167)
153 1b7f_A Protein (SXL-lethal pro 99.6 8.8E-16 3E-20 137.1 10.6 82 136-217 2-83 (168)
154 1wg1_A KIAA1579 protein, homol 99.6 1.1E-15 3.8E-20 122.0 9.6 76 136-218 4-79 (88)
155 2yh0_A Splicing factor U2AF 65 99.6 2.1E-15 7.1E-20 138.5 12.6 85 134-218 111-195 (198)
156 2diu_A KIAA0430 protein; struc 99.6 1.1E-15 3.7E-20 121.2 8.6 74 135-218 6-85 (96)
157 3d2w_A TAR DNA-binding protein 99.6 1.8E-15 6.2E-20 121.1 9.6 74 135-217 9-84 (89)
158 1l3k_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 139.2 10.4 83 136-219 103-185 (196)
159 2g4b_A Splicing factor U2AF 65 99.6 2.3E-15 8E-20 134.9 11.3 79 136-214 93-171 (172)
160 2e5i_A Heterogeneous nuclear r 99.6 4.3E-15 1.5E-19 126.0 11.7 77 136-218 22-103 (124)
161 1sjr_A Polypyrimidine tract-bi 99.6 1.8E-15 6.2E-20 133.7 9.7 78 137-218 46-125 (164)
162 2pe8_A Splicing factor 45; RRM 99.6 3.4E-15 1.2E-19 123.2 10.5 83 134-216 5-93 (105)
163 1wf0_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.4E-20 121.5 7.5 76 136-218 4-79 (88)
164 3zzy_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 127.3 10.4 79 136-219 27-108 (130)
165 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-15 1.3E-19 124.9 10.6 77 136-215 7-86 (114)
166 1l3k_A Heterogeneous nuclear r 99.6 2.6E-15 8.7E-20 137.7 10.3 83 134-217 10-92 (196)
167 2cjk_A Nuclear polyadenylated 99.6 1.4E-15 4.6E-20 135.8 7.8 81 136-217 86-166 (167)
168 3tyt_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 137.3 11.1 79 135-218 2-81 (205)
169 2bz2_A Negative elongation fac 99.6 3.1E-15 1.1E-19 126.9 8.5 76 135-218 37-112 (121)
170 4f02_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 138.9 10.2 80 136-217 102-181 (213)
171 2hzc_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 118.3 8.5 71 136-213 5-86 (87)
172 1b7f_A Protein (SXL-lethal pro 99.6 7.3E-15 2.5E-19 131.1 10.1 81 134-214 86-168 (168)
173 3md3_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 129.5 10.7 80 138-218 1-80 (166)
174 2qfj_A FBP-interacting repress 99.6 6E-15 2.1E-19 137.3 9.3 80 137-216 28-107 (216)
175 1fxl_A Paraneoplastic encephal 99.5 1E-14 3.5E-19 129.8 9.3 80 135-214 86-167 (167)
176 2cjk_A Nuclear polyadenylated 99.5 1.2E-14 4E-19 129.7 8.8 79 136-216 2-80 (167)
177 2voo_A Lupus LA protein; RNA-b 99.5 2.1E-14 7.2E-19 131.9 9.9 78 137-216 109-186 (193)
178 1fje_B Nucleolin RBD12, protei 99.5 2E-14 7E-19 129.3 9.6 79 134-217 96-174 (175)
179 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-13 4.6E-18 133.9 15.4 77 134-215 204-281 (282)
180 3pgw_A U1-A; protein-RNA compl 99.5 3.9E-14 1.3E-18 137.8 11.6 82 134-218 6-91 (282)
181 3nmr_A Cugbp ELAV-like family 99.5 2.3E-14 8E-19 128.6 9.0 80 135-215 93-175 (175)
182 3nmr_A Cugbp ELAV-like family 99.5 2.3E-14 7.7E-19 128.7 8.8 82 136-217 2-88 (175)
183 2adc_A Polypyrimidine tract-bi 99.5 2.5E-14 8.4E-19 135.1 9.2 84 129-217 26-110 (229)
184 3u1l_A PRE-mRNA-splicing facto 99.5 1.6E-14 5.6E-19 136.0 7.9 80 135-220 132-232 (240)
185 2ghp_A U4/U6 snRNA-associated 99.5 3.5E-14 1.2E-18 138.8 10.3 83 134-217 207-291 (292)
186 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.8E-18 115.6 11.4 82 133-218 11-103 (112)
187 3v4m_A Splicing factor U2AF 65 99.5 7.9E-14 2.7E-18 115.0 9.8 82 135-216 3-96 (105)
188 1fje_B Nucleolin RBD12, protei 99.5 2.2E-14 7.4E-19 129.1 4.8 83 133-217 9-91 (175)
189 3smz_A Protein raver-1, ribonu 99.5 1.7E-13 5.9E-18 133.3 11.4 83 136-218 94-176 (284)
190 3smz_A Protein raver-1, ribonu 99.5 1.4E-13 4.6E-18 134.0 10.5 84 134-218 181-265 (284)
191 3tyt_A Heterogeneous nuclear r 99.5 7.5E-14 2.6E-18 129.5 8.1 78 135-214 121-204 (205)
192 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-13 6E-18 115.2 8.6 81 136-216 19-108 (118)
193 1qm9_A Polypyrimidine tract-bi 99.4 1.1E-13 3.9E-18 127.1 7.6 77 137-218 3-80 (198)
194 1jmt_A Splicing factor U2AF 35 99.4 5.7E-14 2E-18 115.7 4.6 73 141-214 19-103 (104)
195 3sde_A Paraspeckle component 1 99.4 3.3E-13 1.1E-17 129.9 10.2 77 134-216 19-95 (261)
196 1qm9_A Polypyrimidine tract-bi 99.4 2.2E-13 7.5E-18 125.2 8.1 77 135-216 118-196 (198)
197 2adc_A Polypyrimidine tract-bi 99.4 4.3E-13 1.5E-17 126.5 9.8 77 135-216 149-227 (229)
198 3sde_A Paraspeckle component 1 99.4 5.4E-13 1.8E-17 128.4 9.2 81 136-217 95-179 (261)
199 2ghp_A U4/U6 snRNA-associated 99.4 6.6E-13 2.3E-17 129.7 9.5 81 136-217 116-197 (292)
200 2yh0_A Splicing factor U2AF 65 99.4 9.3E-13 3.2E-17 120.7 9.6 75 136-217 3-88 (198)
201 2g4b_A Splicing factor U2AF 65 99.4 8.3E-13 2.8E-17 118.2 9.0 75 136-217 3-88 (172)
202 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.8E-17 130.0 10.6 81 129-215 10-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.9E-12 1.3E-16 103.6 11.2 75 137-218 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.3 6.1E-12 2.1E-16 105.0 10.3 78 135-216 5-92 (114)
205 3pgw_S U1-70K; protein-RNA com 99.2 3.3E-10 1.1E-14 116.7 16.6 15 182-196 150-164 (437)
206 1owx_A Lupus LA protein, SS-B, 99.2 7.9E-11 2.7E-15 98.5 9.1 78 132-215 13-94 (121)
207 2dnr_A Synaptojanin-1; RRM dom 99.2 9.7E-11 3.3E-15 91.9 8.5 74 134-216 4-85 (91)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 5.2E-10 1.8E-14 88.2 6.0 74 133-215 11-93 (95)
209 3dxb_A Thioredoxin N-terminall 98.8 4.6E-09 1.6E-13 98.2 6.2 79 137-215 124-211 (222)
210 2l9w_A U4/U6 snRNA-associated- 98.4 9.8E-07 3.4E-11 70.9 8.8 72 136-213 20-96 (117)
211 1wey_A Calcipressin 1; structu 97.9 4.1E-05 1.4E-09 61.3 8.6 75 137-217 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.6 0.00046 1.6E-08 54.2 9.4 78 138-215 2-86 (91)
213 1whv_A Poly(A)-specific ribonu 97.4 0.00037 1.3E-08 54.9 7.1 54 137-199 16-69 (100)
214 2dhx_A Poly (ADP-ribose) polym 97.3 0.0032 1.1E-07 50.2 11.4 71 136-215 7-82 (104)
215 3ctr_A Poly(A)-specific ribonu 97.2 0.00069 2.3E-08 53.5 6.4 54 138-200 7-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 97.1 0.0017 5.7E-08 53.5 8.0 70 137-214 24-94 (119)
217 2l08_A Regulator of nonsense t 96.8 0.0019 6.4E-08 51.1 5.9 77 138-214 10-93 (97)
218 3p3d_A Nucleoporin 53; structu 96.2 0.0051 1.7E-07 51.3 5.0 76 138-215 8-97 (132)
219 3pq1_A Poly(A) RNA polymerase; 95.3 0.009 3.1E-07 61.0 3.5 54 138-197 54-107 (464)
220 2kn4_A Immunoglobulin G-bindin 94.5 0.018 6.2E-07 49.8 2.9 36 166-203 2-37 (158)
221 2i2y_A Fusion protein consists 93.8 0.016 5.3E-07 49.8 0.9 40 176-216 10-50 (150)
222 3d45_A Poly(A)-specific ribonu 87.2 1.2 4.1E-05 46.2 7.7 55 137-200 440-494 (507)
223 2g0c_A ATP-dependent RNA helic 78.5 4.7 0.00016 29.7 6.0 68 139-215 2-75 (76)
224 4eyt_A Telomerase associated p 68.6 25 0.00085 26.8 7.6 56 136-199 11-66 (129)
225 4f25_A Polyadenylate-binding p 49.1 3.6 0.00012 32.9 0.0 18 136-153 96-113 (115)
226 4e8u_A Putative uncharacterize 49.1 25 0.00086 30.4 5.3 56 139-197 14-81 (172)
227 3lpe_A Putative transcription 43.6 48 0.0017 25.3 5.8 35 163-202 39-73 (92)
228 3fry_A Probable copper-exporti 36.0 88 0.003 21.8 6.0 55 138-199 7-61 (73)
229 3h7h_B Transcription elongatio 28.0 73 0.0025 25.1 4.5 36 163-203 40-75 (106)
230 3ts2_A Protein LIN-28 homolog 25.7 13 0.00044 31.5 -0.3 28 152-187 2-29 (148)
231 2exu_A Transcription initiatio 24.8 85 0.0029 27.8 4.8 37 164-205 139-175 (200)
232 3fut_A Dimethyladenosine trans 24.2 58 0.002 30.3 3.9 31 138-169 111-141 (271)
233 3uzu_A Ribosomal RNA small sub 23.4 31 0.001 32.4 1.8 32 138-169 115-146 (279)
234 2cu1_A Mitogen-activated prote 23.3 1.5E+02 0.0052 23.0 5.3 64 144-216 23-87 (103)
235 3dxs_X Copper-transporting ATP 23.0 1.7E+02 0.0059 20.0 5.6 56 138-199 4-63 (74)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=100.00 E-value=1.8e-40 Score=342.87 Aligned_cols=201 Identities=59% Similarity=1.039 Sum_probs=165.6
Q ss_pred CCCChhhhccCCCCCCCCCCCCCCC-----CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 011668 40 TGLTANLLKLFEPRAPLEYKPPPEK-----RKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGA 114 (480)
Q Consensus 40 ~~~pp~~~~lf~p~pp~~~~pp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~k~~~~~ 114 (480)
..|||+|+.||+|.||++++||+.. ..+++++++++|+..|..+... ++...++++.+........+++...
T Consensus 3 ~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~---~~~~~~e~~~~~~~~~~~~k~~~~~ 79 (437)
T 3pgw_S 3 QFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDA---PPPTRAETREERMERKRREKIERRQ 79 (437)
T ss_pred CcCCccHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccc---cccccccCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999877543 2467788999998888765432 3333456666666555666666666
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHH
Q 011668 115 EKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKA 194 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~ 194 (480)
..+...+..|.+...+.....+.++|||+|||+.||+++|..||++||.|+.|.|+.+..|+.++|||||+|.+.++|.+
T Consensus 80 ~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 159 (437)
T 3pgw_S 80 QEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159 (437)
T ss_pred HHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHH
Confidence 67777788888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeCCeEEEEeeecCCCCCCCCCCCCCCCCCCccCCCccccc
Q 011668 195 AYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQ 243 (480)
Q Consensus 195 A~~~l~g~~i~gr~l~V~~a~~~~~~~~~~~~~ggg~gg~~~g~~~~~~ 243 (480)
||..|||+.|+|+.|.|.|+.+.....|.+..+|||+|++++++...+.
T Consensus 160 Ai~~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ggG~gg~~~gg~~~~~ 208 (437)
T 3pgw_S 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI 208 (437)
T ss_pred HHHHcCCCEECCEEEEEEEeCCCCCCCCCCCCcCCCCCCCCCCCCcccc
Confidence 9999999999999999999999998888887777666665555444433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=9.7e-21 Score=155.14 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||..|||..|+|+.|.|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=150.77 Aligned_cols=89 Identities=28% Similarity=0.565 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++ .|.|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3345678999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred eeecCCCCCC
Q 011668 212 DVERGRTVPN 221 (480)
Q Consensus 212 ~~a~~~~~~~ 221 (480)
.|+.....+.
T Consensus 91 ~~a~~~~~~~ 100 (116)
T 2cqd_A 91 NLAYLGAKPR 100 (116)
T ss_dssp EESTTTCCCC
T ss_pred EEcccCCCcc
Confidence 9998654443
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=152.31 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.|.++|||+||++.+++++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=157.55 Aligned_cols=87 Identities=26% Similarity=0.511 Sum_probs=81.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 011668 214 ERGRTVP 220 (480)
Q Consensus 214 a~~~~~~ 220 (480)
+......
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9875443
No 6
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=147.97 Aligned_cols=86 Identities=36% Similarity=0.592 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.+..|+.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998644
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=145.53 Aligned_cols=85 Identities=28% Similarity=0.508 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 011668 215 RGRTV 219 (480)
Q Consensus 215 ~~~~~ 219 (480)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86543
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=147.21 Aligned_cols=89 Identities=29% Similarity=0.430 Sum_probs=82.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeecCCCC
Q 011668 211 VDVERGRTV 219 (480)
Q Consensus 211 V~~a~~~~~ 219 (480)
|.|+.+...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=147.42 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc-CCceeCCeEEEEeee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVDVE 214 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l-~g~~i~gr~l~V~~a 214 (480)
+++|||+|||+.+|+++|.++|++|| .|..|.|+.++.|+.++|||||+|.+.++|.+||..| ++..|+|+.|.|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999977 456799999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=144.94 Aligned_cols=85 Identities=22% Similarity=0.486 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986554
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=146.80 Aligned_cols=88 Identities=26% Similarity=0.476 Sum_probs=82.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 011668 214 ERGRTVPN 221 (480)
Q Consensus 214 a~~~~~~~ 221 (480)
+.+.....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765443
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=144.51 Aligned_cols=85 Identities=31% Similarity=0.581 Sum_probs=80.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 011668 215 RGRTV 219 (480)
Q Consensus 215 ~~~~~ 219 (480)
.....
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87554
No 13
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.8e-19 Score=154.23 Aligned_cols=86 Identities=33% Similarity=0.475 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011668 215 RGRTVP 220 (480)
Q Consensus 215 ~~~~~~ 220 (480)
.....+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 14
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=3.6e-19 Score=158.22 Aligned_cols=84 Identities=32% Similarity=0.498 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||..||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8644
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=146.51 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 33455778999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeecCCCC
Q 011668 211 VDVERGRTV 219 (480)
Q Consensus 211 V~~a~~~~~ 219 (480)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999986543
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=147.35 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCc----eeCCeEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGP--IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR----KLDGRRV 209 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~--i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~----~i~gr~l 209 (480)
.-.||||+|||+.+|+++|.++|++||. |..|.|+.|+.||.++|||||+|.+.++|..||..|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999994 679999999999999999999999999999999999997 5999999
Q ss_pred EEeeecC
Q 011668 210 LVDVERG 216 (480)
Q Consensus 210 ~V~~a~~ 216 (480)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=144.70 Aligned_cols=85 Identities=24% Similarity=0.420 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRV-RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+.++|||+|||+.+++++|..+|++||.|..| .|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986543
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.6e-18 Score=145.87 Aligned_cols=87 Identities=30% Similarity=0.497 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
|+.....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9986543
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=141.38 Aligned_cols=82 Identities=30% Similarity=0.526 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.6e-19 Score=148.65 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 986543
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=148.26 Aligned_cols=83 Identities=36% Similarity=0.606 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 466899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8644
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=144.88 Aligned_cols=86 Identities=33% Similarity=0.608 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 986553
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=7.3e-19 Score=142.96 Aligned_cols=83 Identities=23% Similarity=0.501 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
|.++|||+|||+.+++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=141.74 Aligned_cols=84 Identities=24% Similarity=0.473 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec
Q 011668 212 DVER 215 (480)
Q Consensus 212 ~~a~ 215 (480)
.||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.3e-19 Score=142.46 Aligned_cols=86 Identities=37% Similarity=0.592 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecC
Q 011668 211 VDVERG 216 (480)
Q Consensus 211 V~~a~~ 216 (480)
|.|+..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999863
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=145.24 Aligned_cols=87 Identities=30% Similarity=0.525 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC------CceeCC
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD------GRKLDG 206 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~------g~~i~g 206 (480)
...+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|| |..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEeeecCCCC
Q 011668 207 RRVLVDVERGRTV 219 (480)
Q Consensus 207 r~l~V~~a~~~~~ 219 (480)
+.|.|.|+.+...
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999986543
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=144.02 Aligned_cols=86 Identities=29% Similarity=0.509 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCC---CCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. |+.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3668999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 011668 212 DVERGRTVP 220 (480)
Q Consensus 212 ~~a~~~~~~ 220 (480)
.++.....+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999875543
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=144.75 Aligned_cols=87 Identities=22% Similarity=0.531 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccc-CCCCCccceEEEEEechhhHHHHHHHc-CCceeCCeEEE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTD-KETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVL 210 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d-~~t~~~~g~afV~F~~~~~a~~A~~~l-~g~~i~gr~l~ 210 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| ||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 788999999999999999999999999 99999999999
Q ss_pred EeeecCCCC
Q 011668 211 VDVERGRTV 219 (480)
Q Consensus 211 V~~a~~~~~ 219 (480)
|.|+.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999986543
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=143.85 Aligned_cols=85 Identities=33% Similarity=0.594 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|.++|++|| |..|.|+.+..|+.++|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999999999999999999999999999 799999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9986543
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=7.3e-19 Score=138.76 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
+.+|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=6.5e-19 Score=139.68 Aligned_cols=81 Identities=28% Similarity=0.515 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 011668 215 R 215 (480)
Q Consensus 215 ~ 215 (480)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=143.43 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCC-CCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+++++|.++|+.|| |..|.|+.+..+ +.++|||||+|.+.++|.+|| .|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 44678999999999999999999999999 999999999887 999999999999999999999 899999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=9.2e-19 Score=144.99 Aligned_cols=87 Identities=21% Similarity=0.343 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee---CCeE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---DGRR 208 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i---~gr~ 208 (480)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..| .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445678999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEEeeecCCC
Q 011668 209 VLVDVERGRT 218 (480)
Q Consensus 209 l~V~~a~~~~ 218 (480)
|.|.++....
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998644
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=144.00 Aligned_cols=86 Identities=14% Similarity=0.429 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34457789999999999999999999999999999999988 7999999999999999999999999999999999999
Q ss_pred eeecCCCC
Q 011668 212 DVERGRTV 219 (480)
Q Consensus 212 ~~a~~~~~ 219 (480)
.|+.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987554
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=141.83 Aligned_cols=84 Identities=24% Similarity=0.470 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98644
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=145.83 Aligned_cols=84 Identities=32% Similarity=0.463 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
.+..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8654
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=143.35 Aligned_cols=84 Identities=30% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
....+.++|||+|||+.+++++|.++|++||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34557789999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCeEEEEeeec
Q 011668 204 LDGRRVLVDVER 215 (480)
Q Consensus 204 i~gr~l~V~~a~ 215 (480)
|.|+.|.|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=140.35 Aligned_cols=89 Identities=20% Similarity=0.467 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+.. .++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998864 388999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 011668 213 VERGRTVPNWR 223 (480)
Q Consensus 213 ~a~~~~~~~~~ 223 (480)
++.+.....+.
T Consensus 89 ~a~~~~~~~~~ 99 (103)
T 2cq3_A 89 NATARVMTNSG 99 (103)
T ss_dssp ECCSSCCCCCS
T ss_pred EcccCCCCCCC
Confidence 99887655443
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=145.20 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
...+.++|||+|||+.+|+++|.++|++||.|. .|.|+.++.++.++|||||+|.+.++|..||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeEEEEeeecCCC
Q 011668 205 DGRRVLVDVERGRT 218 (480)
Q Consensus 205 ~gr~l~V~~a~~~~ 218 (480)
.|+.|.|.++....
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998654
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=2e-19 Score=144.62 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 138 KTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+|||+|||+.+|+++|.++|++|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.6e-18 Score=144.62 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98644
No 42
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=142.74 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455778999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eeecCCCC
Q 011668 212 DVERGRTV 219 (480)
Q Consensus 212 ~~a~~~~~ 219 (480)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99986543
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.1e-18 Score=142.60 Aligned_cols=86 Identities=20% Similarity=0.381 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC---eEE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG---RRV 209 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g---r~l 209 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999987 79999999999999999999999999999998 999
Q ss_pred EEeeecCCCC
Q 011668 210 LVDVERGRTV 219 (480)
Q Consensus 210 ~V~~a~~~~~ 219 (480)
.|.|+.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999986543
No 44
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=144.91 Aligned_cols=85 Identities=31% Similarity=0.535 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=142.28 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE----
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIK-RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR---- 208 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~---- 208 (480)
..+.++|||+|||+.+++++|.++|++||.|. .|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011668 209 VLVDVERGR 217 (480)
Q Consensus 209 l~V~~a~~~ 217 (480)
|+|.|+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998753
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=140.98 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|..||..||+..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 5688999999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998644
No 47
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=2.8e-18 Score=142.33 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.5e-18 Score=145.28 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 49
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=142.58 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce-eCCeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~-i~gr~l~V 211 (480)
..+.++|||+|||+.+|+++|.++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
.++....
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997644
No 50
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=144.38 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEecccCCCC---CccceEEEEEechhhHHHHHHHcCCcee
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIK---REFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~t~---~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
.....+.++|||+|||+.+++++|. ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+||..|||..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3444567899999999999999999 999999999999999887654 4569999999999999999999999999
Q ss_pred CCeEEEEeeecCCCCC
Q 011668 205 DGRRVLVDVERGRTVP 220 (480)
Q Consensus 205 ~gr~l~V~~a~~~~~~ 220 (480)
+|+.|.|.|+.++...
T Consensus 89 ~gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 89 DGRTLKASLGTTKYCS 104 (111)
T ss_dssp TTEEEEEESCCCCSCS
T ss_pred CCEEEEEEeccccccc
Confidence 9999999999876643
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.2e-18 Score=136.37 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999997 688899999999987
Q ss_pred e
Q 011668 214 E 214 (480)
Q Consensus 214 a 214 (480)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=140.51 Aligned_cols=84 Identities=26% Similarity=0.388 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
|+...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98753
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=4e-19 Score=145.76 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC-eE
Q 011668 136 PYKTLFVARLSY------ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-RR 208 (480)
Q Consensus 136 ~~~~l~V~nL~~------~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g-r~ 208 (480)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeecC
Q 011668 209 VLVDVERG 216 (480)
Q Consensus 209 l~V~~a~~ 216 (480)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999875
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=138.46 Aligned_cols=84 Identities=31% Similarity=0.511 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+.. .++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345678999999999999999999999999999999998854 368999999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998644
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=1.5e-18 Score=149.13 Aligned_cols=88 Identities=38% Similarity=0.605 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011668 211 VDVERGRT 218 (480)
Q Consensus 211 V~~a~~~~ 218 (480)
|.|+..+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997643
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.2e-18 Score=145.07 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 45799999999999999999999999999999999999875
Q ss_pred CC
Q 011668 217 RT 218 (480)
Q Consensus 217 ~~ 218 (480)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 57
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=9.6e-18 Score=138.18 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+ ++||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 011668 214 ERGRTVP 220 (480)
Q Consensus 214 a~~~~~~ 220 (480)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9875543
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=137.44 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..++|||+|||+.+++++|. ++|++||.|..|.|+.+..+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999998765 789999999999999999999999999999999
Q ss_pred eeecCCCC
Q 011668 212 DVERGRTV 219 (480)
Q Consensus 212 ~~a~~~~~ 219 (480)
.++.+...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99976543
No 59
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=144.96 Aligned_cols=80 Identities=20% Similarity=0.491 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+++++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=136.23 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCC-ccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNK-PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~-~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=140.52 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC--CceeCCeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~--g~~i~gr~l~V 211 (480)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999864 6899999999999999999886 47899999999
Q ss_pred eeecCCCCCC
Q 011668 212 DVERGRTVPN 221 (480)
Q Consensus 212 ~~a~~~~~~~ 221 (480)
.|+..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765543
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=4.8e-18 Score=135.86 Aligned_cols=79 Identities=24% Similarity=0.570 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 369999999999999999999999999999999999989999999999999999999999 8999999999999999875
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=137.61 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||. ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 4789999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
|+..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987544
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=145.31 Aligned_cols=83 Identities=25% Similarity=0.533 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347999999999999999999999999999999999999999999999999999999999996 9999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=140.32 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
....++|||+|||+.+++++|+.+|++||.|..+.++.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 874
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.6e-18 Score=141.71 Aligned_cols=84 Identities=24% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+..||.++|||||+|.+.++|..||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999976 5999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97643
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=138.15 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34668999999999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred ec
Q 011668 214 ER 215 (480)
Q Consensus 214 a~ 215 (480)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 68
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=151.56 Aligned_cols=82 Identities=17% Similarity=0.347 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..++|||+|||+++|+++|.++|+.|| .|..|.|+.++.||.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 69
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=137.76 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC-----eEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-----RRV 209 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g-----r~l 209 (480)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||..|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35689999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEeeecCCC
Q 011668 210 LVDVERGRT 218 (480)
Q Consensus 210 ~V~~a~~~~ 218 (480)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998643
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=5.5e-18 Score=152.04 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.||.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98644
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=135.77 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc--CCceeCCeEEE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA--DGRKLDGRRVL 210 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l--~g~~i~gr~l~ 210 (480)
...|.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..| ++..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457899999999999999999999999999999998764 689999999999999999976 57889999999
Q ss_pred EeeecCCCCCC
Q 011668 211 VDVERGRTVPN 221 (480)
Q Consensus 211 V~~a~~~~~~~ 221 (480)
|.|+.......
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99998766544
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=133.62 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
....++|||+|||+.+++++|.++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999998 789999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98653
No 73
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=148.01 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEecccCCCCCccceEEEEEechhhHHHHHHHcCCc----eeCCe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKR--VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR----KLDGR 207 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~--v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~----~i~gr 207 (480)
..+.++|||+|||+.+|+++|.++|++||.|.. |.|+.++.||.++|||||+|.+. +|..||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEeeecCCC
Q 011668 208 RVLVDVERGRT 218 (480)
Q Consensus 208 ~l~V~~a~~~~ 218 (480)
.|.|.|+.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998643
No 74
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=139.88 Aligned_cols=86 Identities=19% Similarity=0.467 Sum_probs=78.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 131 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
.....+.++|||+|||+.+++++|..+|++||.|..|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344567899999999999999999999999999999999885 45899999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011668 211 VDVERGRT 218 (480)
Q Consensus 211 V~~a~~~~ 218 (480)
|.++.++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998653
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=141.49 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|..||. ++|..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 457999999999999999999999999999999999987 9999999999999999999999 99999999999999876
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=7.8e-18 Score=135.56 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ ++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999874 7889999999999999999999999999999999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8644
No 77
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=2e-17 Score=141.10 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
|.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987543
No 78
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=141.60 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccC-CCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+++++|..+|+.|| |..|.|+.+. .+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=2.5e-18 Score=139.33 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|++||.|..+.++.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999989898888899999999999999999999999999999999999999875
No 80
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=7.9e-18 Score=143.91 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 134 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
..|.++|||+|||+.+++++|+ ++|++||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999998865 7999999999988854 58899999999999999999999999999999999
Q ss_pred EEeeecCC
Q 011668 210 LVDVERGR 217 (480)
Q Consensus 210 ~V~~a~~~ 217 (480)
.|.|+...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99999754
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=135.96 Aligned_cols=82 Identities=30% Similarity=0.543 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|+++|++||.| .|+.+ .++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467899999999999999999999999987 56665 5789999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.+...
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 986543
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=8.6e-18 Score=139.04 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC
Q 011668 133 SGDPYKTLFVARLSYET------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 206 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~------te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g 206 (480)
.....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999998 4679999999999999999999999999999999
Q ss_pred e-EEEEeeecC
Q 011668 207 R-RVLVDVERG 216 (480)
Q Consensus 207 r-~l~V~~a~~ 216 (480)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-18 Score=138.08 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred c
Q 011668 215 R 215 (480)
Q Consensus 215 ~ 215 (480)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-18 Score=144.78 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i-~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+|+++|.++|+.||.| ..|.|+.+. ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4467899999999999999999999999999 899999998 899999999999999999999996 9999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=136.74 Aligned_cols=86 Identities=37% Similarity=0.643 Sum_probs=77.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 130 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
+.....+.++|||+|||+.+|+++|.++|+.|+ .|.|+.+..++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 344456788999999999999999999999874 57778888889999999999999999999999999999999999
Q ss_pred EEeeecCCC
Q 011668 210 LVDVERGRT 218 (480)
Q Consensus 210 ~V~~a~~~~ 218 (480)
.|.|+.++.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998644
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.2e-17 Score=142.44 Aligned_cols=79 Identities=29% Similarity=0.594 Sum_probs=75.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..|| .|||..|+|+.|.|.|+...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 69999999999999999999999999999999999889999999999999999999999 79999999999999998753
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=138.80 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|+++|+.||. +.|.|+.++ ++.++|||||+|.+.++|++||. ||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3446689999999999999999999999994 599999998 89999999999999999999995 89999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987543
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=2.3e-17 Score=146.71 Aligned_cols=85 Identities=33% Similarity=0.576 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98643
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=3.4e-18 Score=132.23 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=72.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|++|+. |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999999899999999999999999999998 9999999999999875
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=137.98 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEec-ccCCCCCccceEEEEEechhhHHHHHHHcC--CceeCCeEEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGP-IKRVRLV-TDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVL 210 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-i~~v~i~-~d~~t~~~~g~afV~F~~~~~a~~A~~~l~--g~~i~gr~l~ 210 (480)
.+.++|||+|||+.+|+++|.++|++||. |..|.|+ .+..++.++|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred EeeecCCCC
Q 011668 211 VDVERGRTV 219 (480)
Q Consensus 211 V~~a~~~~~ 219 (480)
|.|+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987554
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=140.10 Aligned_cols=83 Identities=36% Similarity=0.689 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=4.5e-18 Score=160.73 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..++|||+||++.||+++|+++|++|| .|+.|.|+.++.|+.++|||||+|.+.++|.+||..|||+.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 93
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=131.37 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.+.-|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999865 58999999999999999999999999999999999984
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=134.83 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce--eCCeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK--LDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~--i~gr~l~V 211 (480)
..|+++|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..||..|++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34788999999999999999999999999999999975 36899999999999999999999875 88999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=143.54 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 011668 214 E 214 (480)
Q Consensus 214 a 214 (480)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=132.26 Aligned_cols=78 Identities=23% Similarity=0.459 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|..+|++||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999997 47999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986543
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=136.27 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+|+++|.++|++||.|.. |.|+.+ .++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888888 7899999999999999999999996 9999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
++.....
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876543
No 98
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-18 Score=143.31 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.+..+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984333322223688999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986543
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=136.22 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC--ceeCCeE
Q 011668 132 VSGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRR 208 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g--~~i~gr~ 208 (480)
....|.++|||+|||+ .+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..||+ ..|.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455789999999999 9999999999999999999999864 47999999999999999999886 4599999
Q ss_pred EEEeeecCC
Q 011668 209 VLVDVERGR 217 (480)
Q Consensus 209 l~V~~a~~~ 217 (480)
|.|.|+...
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999999853
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=138.91 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC--ceeCCeEEE
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVL 210 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g--~~i~gr~l~ 210 (480)
...|.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|++ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3457889999999999999999999999999999999864 68999999999999999998874 689999999
Q ss_pred EeeecCCCCCC
Q 011668 211 VDVERGRTVPN 221 (480)
Q Consensus 211 V~~a~~~~~~~ 221 (480)
|.|+..+....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765543
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=5.5e-18 Score=146.82 Aligned_cols=87 Identities=32% Similarity=0.558 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
|+.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9986443
No 102
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=130.20 Aligned_cols=78 Identities=28% Similarity=0.538 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+++++|..+|++||.|..|.|+. +||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999974 499999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+.+..
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=2.8e-18 Score=137.68 Aligned_cols=81 Identities=27% Similarity=0.574 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred CC
Q 011668 218 TV 219 (480)
Q Consensus 218 ~~ 219 (480)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-18 Score=131.50 Aligned_cols=76 Identities=24% Similarity=0.524 Sum_probs=73.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999987
No 105
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-19 Score=149.03 Aligned_cols=83 Identities=30% Similarity=0.423 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
+.++|||+|||+.+++++|..+|++||.|.. |.|+.++.++.++|||||+|.+.++|..||..|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 5679999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q 011668 208 RVLVDVERGRT 218 (480)
Q Consensus 208 ~l~V~~a~~~~ 218 (480)
.|.|.++....
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999998654
No 106
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2.6e-17 Score=137.20 Aligned_cols=77 Identities=10% Similarity=0.084 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..++|||+|||+.+++++|+++|++|| .|..|.|+. ..++|||||+|.+.++|+.||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 999998864 347899999999999999999999999999999999998
Q ss_pred cC
Q 011668 215 RG 216 (480)
Q Consensus 215 ~~ 216 (480)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=132.16 Aligned_cols=79 Identities=28% Similarity=0.507 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC--CeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD--GRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~--gr~l~V 211 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|++||..|||..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999999753 689999999999999999999999999 999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998643
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-17 Score=134.74 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 5689999999999999999999999999999999875 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=129.79 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESY--GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..+.++|||+|||+.+|+++|..+|++| |.|..|.++ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999875 479999999999999999999999999999999
Q ss_pred eeecCCC
Q 011668 212 DVERGRT 218 (480)
Q Consensus 212 ~~a~~~~ 218 (480)
.|+.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998654
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=136.99 Aligned_cols=82 Identities=16% Similarity=0.346 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee--------C
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL--------D 205 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i--------~ 205 (480)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3466899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEEEEeeecC
Q 011668 206 GRRVLVDVERG 216 (480)
Q Consensus 206 gr~l~V~~a~~ 216 (480)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999874
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=133.28 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC--ceeCCeEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g--~~i~gr~l~V 211 (480)
..|.++|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 347789999999999999999999999999999998753 68999999999999999998865 4599999999
Q ss_pred eeecCCCC
Q 011668 212 DVERGRTV 219 (480)
Q Consensus 212 ~~a~~~~~ 219 (480)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 112
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=134.49 Aligned_cols=79 Identities=19% Similarity=0.449 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34678999999999 99999999999999999999984 5899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 011668 213 VERGRTVP 220 (480)
Q Consensus 213 ~a~~~~~~ 220 (480)
|+.....+
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99865543
No 113
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=6.2e-18 Score=146.75 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
...++|||+|||+.+|+++|+++|++|| |+.|.|+.++. +.++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3567899999999999999999999999 77999999986 999999999999999999999 69999999999999998
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7644
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=138.53 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
...++|||+|||+.+|+++|.++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||. ||+..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999998 89999999887 9999999999999999999999 9999999999999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998653
No 115
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-18 Score=139.05 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|.. .++.+..++.++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999887 677777789999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97643
No 116
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=9e-17 Score=130.88 Aligned_cols=77 Identities=17% Similarity=0.429 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 133 SGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
...+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
.++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998753
No 117
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.7e-17 Score=133.72 Aligned_cols=81 Identities=17% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 134 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
..+.++|||+|||+.+++++|. .+|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3477899999999999999999 9999999999999874 47788999999999999999999999999999999
Q ss_pred EEeeecCC
Q 011668 210 LVDVERGR 217 (480)
Q Consensus 210 ~V~~a~~~ 217 (480)
.|.|+.+.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99999764
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=131.29 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999753 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98644
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-17 Score=142.93 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|||+.+|+++|..+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999886666667789999999999999999999999 9999999999999998
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=132.72 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
....++|||+|||+.+++++|..+|++||.|. +.|+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999996 66664 46789999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+.+.
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=130.67 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=67.6
Q ss_pred CEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe-EEE
Q 011668 138 KTLFVARLSYET------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-RVL 210 (480)
Q Consensus 138 ~~l~V~nL~~~~------te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr-~l~ 210 (480)
++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|..||..|||..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 46799999999999999999999999999999999 887
Q ss_pred E
Q 011668 211 V 211 (480)
Q Consensus 211 V 211 (480)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=6.1e-17 Score=136.05 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999875 55689999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 875
No 123
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.5e-17 Score=146.60 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|+|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=6.7e-17 Score=134.37 Aligned_cols=77 Identities=22% Similarity=0.471 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97643
No 125
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=130.90 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC-ceeCCeEEEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGP-IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG-RKLDGRRVLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g-~~i~gr~l~V~ 212 (480)
.+.++|||+|||+.+|+++|.++|++||. |..+.|. ++|||||+|.+.++|..||..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46689999999999999999999999999 6655552 468999999999999999999999 99999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+.+..
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 126
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.4e-16 Score=132.77 Aligned_cols=74 Identities=24% Similarity=0.505 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+.++|||+|||+. +++++|..+|++||.|..|.| ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999988 4689999999999999999999999999999999999
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.6e-17 Score=128.42 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 139 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 139 ~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||. +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 5899999999999875
No 128
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=126.60 Aligned_cols=76 Identities=25% Similarity=0.463 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc-CCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l-~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..| +|..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999863 689999999999999999988 9999999999999
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=134.40 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC--CceeCCeEEE
Q 011668 134 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVL 210 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~--g~~i~gr~l~ 210 (480)
..|.++|||+|||+. +|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..||..|| +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 99999999999999999999974 36899999999999999999885 4669999999
Q ss_pred EeeecCCCCCC
Q 011668 211 VDVERGRTVPN 221 (480)
Q Consensus 211 V~~a~~~~~~~ 221 (480)
|.|+.......
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998655433
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=127.10 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999974 4999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9764
No 131
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=128.66 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+|+++|..+|++||.|..| +.+..++. ||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 55555555 99999999999999999 99999999999999887
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.7e-17 Score=134.01 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
..+|||+|||+.+|+++|+++|+.| .|..|.|+.+.. |.++|||||+|.+.++|.+|| .||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999976 999999999999999999999 5999999999999988764
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.7e-17 Score=132.16 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+++++|..+|++||.|..|.|+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45799999999999999999999999999999997 357899999999999999999999999999999999987
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=5.1e-17 Score=136.67 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE-----EE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR-----VL 210 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~-----l~ 210 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+ |||||+|.+.++|++||..|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3578999999999999999999999999999999865 89999999999999999999999999998 66
Q ss_pred EeeecC
Q 011668 211 VDVERG 216 (480)
Q Consensus 211 V~~a~~ 216 (480)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666543
No 135
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.7e-17 Score=135.01 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=71.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEec----hhh----HHHHHH--HcCCce
Q 011668 138 KTLFVARL----SYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH----TRD----MKAAYK--QADGRK 203 (480)
Q Consensus 138 ~~l~V~nL----~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~----~~~----a~~A~~--~l~g~~ 203 (480)
+.|||+|| |+.|++.+|+.+|+.||+|..|.++.|+.||.++|||||+|.+ +++ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEeeec
Q 011668 204 LDGRRVLVDVER 215 (480)
Q Consensus 204 i~gr~l~V~~a~ 215 (480)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=133.10 Aligned_cols=76 Identities=30% Similarity=0.651 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 6799999999999999999999999999999999999865
Q ss_pred C
Q 011668 218 T 218 (480)
Q Consensus 218 ~ 218 (480)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=131.50 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|..+|+.||.|..+ ..++.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988766 34688999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.+..
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97643
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=4.3e-17 Score=140.94 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
...++|||+|||+.+|+++|.++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35689999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred eeecC
Q 011668 212 DVERG 216 (480)
Q Consensus 212 ~~a~~ 216 (480)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99864
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.4e-16 Score=148.88 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..|.++|||+|||+.+|+++|.++|++||.|..|.|+.+..|+.++|||||+|.+.++|..||..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 140
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=136.28 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
....++|||+|||+.+|+++|.++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999999 999999999999
Q ss_pred EeeecC
Q 011668 211 VDVERG 216 (480)
Q Consensus 211 V~~a~~ 216 (480)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999875
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.8e-16 Score=125.98 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|| .+|+++|..+|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999984 4678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011668 214 ERGRTV 219 (480)
Q Consensus 214 a~~~~~ 219 (480)
+.....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 986543
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=131.20 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=71.6
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee-----C
Q 011668 133 SGDPYKTLFV--ARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL-----D 205 (480)
Q Consensus 133 ~~~~~~~l~V--~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i-----~ 205 (480)
...|+++||| |||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3457889999 779999999999999999999999988642 68999999999999999999999998 7
Q ss_pred CeEEEEeeecCCC
Q 011668 206 GRRVLVDVERGRT 218 (480)
Q Consensus 206 gr~l~V~~a~~~~ 218 (480)
|..|.|.|+...+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999997543
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=1e-16 Score=131.68 Aligned_cols=79 Identities=23% Similarity=0.517 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|..+|++||.|..|.|+.+. ++.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 89999999999999999999998 9999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=131.60 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+|+++|..+|++||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357899999999999999999999999999998864 46899999999999999999999999999999999997
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=142.11 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE--Eeccc---CCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRV--RLVTD---KETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 208 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v--~i~~d---~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~ 208 (480)
..+.++|||+|||+.+|+++|..+|++||.|..| .++.+ ..++.++|||||+|.+.++|..||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4577899999999999999999999999998764 11111 236889999999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011668 209 VLVDVERGR 217 (480)
Q Consensus 209 l~V~~a~~~ 217 (480)
|.|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=126.93 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRV-RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
...++|||+|||+.+++++|..+|++||.|..| .|+.++.++ .|||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 588776544 499999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=3.3e-16 Score=138.02 Aligned_cols=79 Identities=32% Similarity=0.621 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+.+.
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 148
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.5e-16 Score=134.15 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCee--EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIK--RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~--~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
.+.++|||+|||+.+|+++|+++|+.| .|+ .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 356789999999999999999999999 677 899999987 9999999999999999999999 57899999999999
Q ss_pred eecC
Q 011668 213 VERG 216 (480)
Q Consensus 213 ~a~~ 216 (480)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8764
No 149
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=135.18 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPI----KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i----~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45799999999999999999999999975 689999884 799999999999999999999995 999999999999
Q ss_pred eeecC
Q 011668 212 DVERG 216 (480)
Q Consensus 212 ~~a~~ 216 (480)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98764
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=5.3e-16 Score=144.50 Aligned_cols=88 Identities=27% Similarity=0.470 Sum_probs=82.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCCCC
Q 011668 216 GRTVPNWR 223 (480)
Q Consensus 216 ~~~~~~~~ 223 (480)
....+...
T Consensus 204 ~~~~~~~~ 211 (216)
T 2qfj_A 204 TPPMPLLT 211 (216)
T ss_dssp SCSSTTSC
T ss_pred CCCCCCCC
Confidence 76554433
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=135.61 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
||.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.1e-15 Score=136.06 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+++++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999875
Q ss_pred C
Q 011668 217 R 217 (480)
Q Consensus 217 ~ 217 (480)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=8.8e-16 Score=137.09 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.1e-15 Score=121.98 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+++++|+++|++| .|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 568999999999999999999999999999999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=2.1e-15 Score=138.50 Aligned_cols=85 Identities=28% Similarity=0.484 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97643
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=121.17 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=66.0
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE
Q 011668 135 DPYKT-LFVARLSYETTESK----IKREFESY-GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 208 (480)
Q Consensus 135 ~~~~~-l~V~nL~~~~te~~----L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~ 208 (480)
.|+.| |||+|||+.+++++ |.++|++| |+|..| |+ |||||.|.+.++|..|++.|||..|.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35666 99999999999987 66899999 599887 34 99999999999999999999999999999
Q ss_pred EEEeeecCCC
Q 011668 209 VLVDVERGRT 218 (480)
Q Consensus 209 l~V~~a~~~~ 218 (480)
|+|.||+...
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998643
No 157
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.8e-15 Score=121.06 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce--eCCeEEEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK--LDGRRVLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~--i~gr~l~V~ 212 (480)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 46789999999999999999999999999999999874 68999999999999883 45554 569999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
++.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98754
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.5e-15 Score=139.25 Aligned_cols=83 Identities=24% Similarity=0.459 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||.. +|..|+|+.|.|.|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999999988999999999999999999999985 8999999999999998
Q ss_pred CCCC
Q 011668 216 GRTV 219 (480)
Q Consensus 216 ~~~~ 219 (480)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7553
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.3e-15 Score=134.94 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4688999999999999999999999999999999999889999999999999999999999999999999999999997
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.3e-15 Score=125.95 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCCE--EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccce-EEEEEechhhHHHHHHHcCCceeCC--eEEE
Q 011668 136 PYKT--LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGY-AFIEYMHTRDMKAAYKQADGRKLDG--RRVL 210 (480)
Q Consensus 136 ~~~~--l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~-afV~F~~~~~a~~A~~~l~g~~i~g--r~l~ 210 (480)
|.++ |||+||++.+|+++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 4444 679999999999999999999999999998642 276 9999999999999999999999987 6899
Q ss_pred EeeecCCC
Q 011668 211 VDVERGRT 218 (480)
Q Consensus 211 V~~a~~~~ 218 (480)
|+||++..
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998754
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=1.8e-15 Score=133.71 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC--eEEEEeee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVLVDVE 214 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g--r~l~V~~a 214 (480)
..+|||+||++.+|+++|.++|++||.|..|.|+.. .++|||||+|.+.++|+.|+..|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456999999999999999999999999999998643 357899999999999999999999999965 99999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
+...
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 162
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=3.4e-15 Score=123.22 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEecccCCC-CCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 134 GDPYKTLFVARLSY-----ETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 134 ~~~~~~l~V~nL~~-----~~te~~L~~~F~~~G~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
..++++|+|.||.. ..++++|.++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34788999999963 2378999999999999999999988654 68899999999999999999999999999999
Q ss_pred EEEEeeecC
Q 011668 208 RVLVDVERG 216 (480)
Q Consensus 208 ~l~V~~a~~ 216 (480)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=121.54 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999864 679999999999999754331 345699999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=3.3e-15 Score=127.25 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccce-EEEEEechhhHHHHHHHcCCceeCC--eEEEEe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGY-AFIEYMHTRDMKAAYKQADGRKLDG--RRVLVD 212 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~-afV~F~~~~~a~~A~~~l~g~~i~g--r~l~V~ 212 (480)
+.-.|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|..|+..|||..|.| ..|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3346889999999999999999999999999988753 3578 9999999999999999999999988 899999
Q ss_pred eecCCCC
Q 011668 213 VERGRTV 219 (480)
Q Consensus 213 ~a~~~~~ 219 (480)
|++....
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987543
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=124.89 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCC---CCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET---NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..++|||+|||+.+|+++|.++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||..|+ .|+|+.|.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 568899999999999999999999999999 888888877 7999999999999999999999884 3777777776
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=2.6e-15 Score=137.67 Aligned_cols=83 Identities=29% Similarity=0.583 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999985 99999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8754
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.4e-15 Score=135.82 Aligned_cols=81 Identities=19% Similarity=0.392 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+. |+|..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999998 89999999999999997
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=5.3e-15 Score=137.29 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 135 DPYKTLFVARLS-YETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 135 ~~~~~l~V~nL~-~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
.+.++|||+||+ +.+|+++|.++|++||.|..|.|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 367899999999 89999999999999999999999865 369999999999999999999999999999999999
Q ss_pred ecCCC
Q 011668 214 ERGRT 218 (480)
Q Consensus 214 a~~~~ 218 (480)
+....
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=3.1e-15 Score=126.87 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
.+.++|||+|| .+|+++|..+|++||.|..|.|+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999985 46799999999999999999999999999999999999
Q ss_pred cCCC
Q 011668 215 RGRT 218 (480)
Q Consensus 215 ~~~~ 218 (480)
....
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8654
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=4e-15 Score=138.92 Aligned_cols=80 Identities=23% Similarity=0.475 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999885 4579999999999999999999999999999999999987
Q ss_pred CC
Q 011668 216 GR 217 (480)
Q Consensus 216 ~~ 217 (480)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 53
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.8e-15 Score=118.28 Aligned_cols=71 Identities=23% Similarity=0.482 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
+.++|||+|||+.+++++|.++|++| | .|..|.++.+ +|||||+|.+.++|.+|| .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56799999999999999999999999 8 8999998754 689999999999999999 8999999
Q ss_pred CCeEEEEee
Q 011668 205 DGRRVLVDV 213 (480)
Q Consensus 205 ~gr~l~V~~ 213 (480)
+|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999973
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=7.3e-15 Score=131.08 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC--eEEEE
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g--r~l~V 211 (480)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..|+..|||..|.| +.|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999998889999999999999999999999999999988 99999
Q ss_pred eee
Q 011668 212 DVE 214 (480)
Q Consensus 212 ~~a 214 (480)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-14 Score=129.51 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=74.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecCC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 217 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~~ 217 (480)
++|||+|||+.+|+++|.++|++||.|..|.|+.++. +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999998875 779999999999999999999999999999999999998754
Q ss_pred C
Q 011668 218 T 218 (480)
Q Consensus 218 ~ 218 (480)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=6e-15 Score=137.32 Aligned_cols=80 Identities=30% Similarity=0.540 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46999999999999999999999999999999999998999999999999999999999999999999999999988654
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=1e-14 Score=129.77 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE--EEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR--VLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~--l~V~ 212 (480)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35678999999999999999999999999999999999888999999999999999999999999999999975 8887
Q ss_pred ee
Q 011668 213 VE 214 (480)
Q Consensus 213 ~a 214 (480)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=1.2e-14 Score=129.70 Aligned_cols=79 Identities=22% Similarity=0.488 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999984 678999999999876
Q ss_pred C
Q 011668 216 G 216 (480)
Q Consensus 216 ~ 216 (480)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.1e-14 Score=131.89 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3699999999999999999999999999999999876 4889999999999999999999855 5699999999998764
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=2e-14 Score=129.31 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|.++|+.||.|..+ ..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988765 45688999999999999999999999999999999999999
Q ss_pred ecCC
Q 011668 214 ERGR 217 (480)
Q Consensus 214 a~~~ 217 (480)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=1.3e-13 Score=133.93 Aligned_cols=77 Identities=26% Similarity=0.409 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEEEEe
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l~V~ 212 (480)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|||||+|.+.++|..||..|||..|+ |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4467899999999999999999999999999999998643 589999999999999999999999999 9999999
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=3.9e-14 Score=137.77 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 134 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
..+.++|||+|||+.+|+++|+ ++|+.||.|..|.|+. ++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3467899999999999999966 8999999999999886 68899999999999999999999999999999999
Q ss_pred EEeeecCCC
Q 011668 210 LVDVERGRT 218 (480)
Q Consensus 210 ~V~~a~~~~ 218 (480)
.|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999987543
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.3e-14 Score=128.56 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC---CeEEEE
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRVLV 211 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~---gr~l~V 211 (480)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|. ++.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999886 4899999999999999999999999998776 499999
Q ss_pred eeec
Q 011668 212 DVER 215 (480)
Q Consensus 212 ~~a~ 215 (480)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=2.3e-14 Score=128.65 Aligned_cols=82 Identities=16% Similarity=0.355 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCC--CccceEEEEEechhhHHHHHHHcCCceeC---CeEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN--KPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRVL 210 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~--~~~g~afV~F~~~~~a~~A~~~l~g~~i~---gr~l~ 210 (480)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..++ .++|||||+|.+.++|..||..|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998876 89999999999999999999999998875 57788
Q ss_pred EeeecCC
Q 011668 211 VDVERGR 217 (480)
Q Consensus 211 V~~a~~~ 217 (480)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8776643
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=2.5e-14 Score=135.06 Aligned_cols=84 Identities=21% Similarity=0.428 Sum_probs=76.2
Q ss_pred CCCCCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 129 DPNVSGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 129 ~~~~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
.+.....+.++|||+|||+ .+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|..||..|||..|.|+
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3344456789999999999 99999999999999999999998764 68999999999999999999999999999
Q ss_pred EEEEeeecCC
Q 011668 208 RVLVDVERGR 217 (480)
Q Consensus 208 ~l~V~~a~~~ 217 (480)
.|.|.++...
T Consensus 101 ~l~v~~a~~~ 110 (229)
T 2adc_A 101 PIRITLSKHQ 110 (229)
T ss_dssp BCEEECCSCC
T ss_pred EEEEEEecCc
Confidence 9999998754
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=1.6e-14 Score=135.96 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee-
Q 011668 135 DPYKTLFVARLSYET---------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL- 204 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~---------te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i- 204 (480)
.+.++|||+||++.+ ++++|..+|++||.|..|.|+. ++|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 357899999999998 7999999999999999999985 479999999999999999999999999
Q ss_pred -----------CCeEEEEeeecCCCCC
Q 011668 205 -----------DGRRVLVDVERGRTVP 220 (480)
Q Consensus 205 -----------~gr~l~V~~a~~~~~~ 220 (480)
.|+.|.|.||...+.+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999875543
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=3.5e-14 Score=138.80 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEecccCC-CCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 134 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKE-TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~-t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
..+.++|||+|||+. +|+++|.++|+.||.|..|.|+.+.. ||.++|||||+|.+.++|..|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346789999999999 99999999999999999999999876 6999999999999999999999 99999999999999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
.|+.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=115.57 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCC
Q 011668 133 SGDPYKTLFVARLSYETT-----------ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG 201 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~t-----------e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g 201 (480)
.+.++++|+|.||..... +++|.++|++||.|..|.| .+. .++|||||+|.+.++|..||..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445788999999954432 5799999999999999966 443 3789999999999999999999999
Q ss_pred ceeCCeEEEEeeecCCC
Q 011668 202 RKLDGRRVLVDVERGRT 218 (480)
Q Consensus 202 ~~i~gr~l~V~~a~~~~ 218 (480)
..|+|+.|.|.|+.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987643
No 187
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=7.9e-14 Score=115.00 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEecccCCC--CCccceEEEEEechhhHHHHHHHcCCc
Q 011668 135 DPYKTLFVARL--SYETT--------ESKIKREFESYGPIKRVRLVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGR 202 (480)
Q Consensus 135 ~~~~~l~V~nL--~~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~t--~~~~g~afV~F~~~~~a~~A~~~l~g~ 202 (480)
.|+++|+|.|| +..+. +++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 33332 3689999999999999999988764 367899999999999999999999999
Q ss_pred eeCCeEEEEeeecC
Q 011668 203 KLDGRRVLVDVERG 216 (480)
Q Consensus 203 ~i~gr~l~V~~a~~ 216 (480)
.|+|+.|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=2.2e-14 Score=129.15 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
...+.++|||+|||+.+|+++|.++|..||.|.. .++.+..++.++|||||+|.+.++|..||. |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999999999999999999998766 344555678899999999999999999995 99999999999999
Q ss_pred eecCC
Q 011668 213 VERGR 217 (480)
Q Consensus 213 ~a~~~ 217 (480)
++...
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.46 E-value=1.7e-13 Score=133.28 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 55799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 643
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.46 E-value=1.4e-13 Score=134.04 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 134 GDPYKTLFVARLSYET-TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~-te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
..+.++|||+|||+.+ ++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3467899999999995 999999999999999999999887 69999999999999999999999999999999999999
Q ss_pred eecCCC
Q 011668 213 VERGRT 218 (480)
Q Consensus 213 ~a~~~~ 218 (480)
|+.+..
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 997643
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=7.5e-14 Score=129.48 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCe----E
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYGPI--KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR----R 208 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~i--~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr----~ 208 (480)
.|.++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 899998765 55679999999999999999999999999887 5
Q ss_pred EEEeee
Q 011668 209 VLVDVE 214 (480)
Q Consensus 209 l~V~~a 214 (480)
|.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777665
No 192
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.8e-13 Score=115.17 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHhhcCCCeeEEEecccCC----CCCccceEEEEEechhhHHHHHHHcCCceeCC
Q 011668 136 PYKTLFVARLSY--ET---TESKIKREFESYGPIKRVRLVTDKE----TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 206 (480)
Q Consensus 136 ~~~~l~V~nL~~--~~---te~~L~~~F~~~G~i~~v~i~~d~~----t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g 206 (480)
|+++|+|.||-. .+ .+++|.++|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999842 22 3689999999999999999998864 45678999999999999999999999999999
Q ss_pred eEEEEeeecC
Q 011668 207 RRVLVDVERG 216 (480)
Q Consensus 207 r~l~V~~a~~ 216 (480)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=127.11 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=71.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeec
Q 011668 137 YKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 215 (480)
Q Consensus 137 ~~~l~V~nL~~-~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~ 215 (480)
.++|||+|||+ .+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998764 6899999999999999999999999999999999987
Q ss_pred CCC
Q 011668 216 GRT 218 (480)
Q Consensus 216 ~~~ 218 (480)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=5.7e-14 Score=115.65 Aligned_cols=73 Identities=12% Similarity=0.366 Sum_probs=64.9
Q ss_pred EEcCCCCCCCHHHHHHHh------------hcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeE
Q 011668 141 FVARLSYETTESKIKREF------------ESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 208 (480)
Q Consensus 141 ~V~nL~~~~te~~L~~~F------------~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~ 208 (480)
++.||++.+++++|.++| ++||.|..|.|+.+.. +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888888777666 9999999999998764 789999999999999999999999999999999
Q ss_pred EEEeee
Q 011668 209 VLVDVE 214 (480)
Q Consensus 209 l~V~~a 214 (480)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=3.3e-13 Score=129.92 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEee
Q 011668 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 213 (480)
Q Consensus 134 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~ 213 (480)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|.. ++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999964 368999999999999999999999999999999999
Q ss_pred ecC
Q 011668 214 ERG 216 (480)
Q Consensus 214 a~~ 216 (480)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=125.19 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEEEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l~V~ 212 (480)
.+.++|||+|||+.+++++|.++|+.|| .|..|.|+.+ .+|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4678999999999999999999999999 9999999653 2689999999999999999999999999 9999999
Q ss_pred eecC
Q 011668 213 VERG 216 (480)
Q Consensus 213 ~a~~ 216 (480)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9975
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=4.3e-13 Score=126.50 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-CeEEEEe
Q 011668 135 DPYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 212 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~-gr~l~V~ 212 (480)
.+.++|||+|||+.+++++|.++|++|| .|..|.|+.. .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999643 3689999999999999999999999999 9999999
Q ss_pred eecC
Q 011668 213 VERG 216 (480)
Q Consensus 213 ~a~~ 216 (480)
|+.+
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9875
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=5.4e-13 Score=128.40 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc-CCceeC---CeEEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLD---GRRVLV 211 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l-~g~~i~---gr~l~V 211 (480)
+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..| ++..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5679999999999999999999999999999999998 57999999999999999999999999 455555 999999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=6.6e-13 Score=129.66 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 214 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a 214 (480)
+.++|||+|||+.+++++|.++|+.|| .|..|.|+.+.. +.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998876 788999999999999999999999999999999999998
Q ss_pred cCC
Q 011668 215 RGR 217 (480)
Q Consensus 215 ~~~ 217 (480)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=9.3e-13 Score=120.65 Aligned_cols=75 Identities=21% Similarity=0.446 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
..++|||+|||+.+|+++|.++|+.| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 5555555 456799999999999999999 7999999
Q ss_pred CCeEEEEeeecCC
Q 011668 205 DGRRVLVDVERGR 217 (480)
Q Consensus 205 ~gr~l~V~~a~~~ 217 (480)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=8.3e-13 Score=118.16 Aligned_cols=75 Identities=20% Similarity=0.432 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
+.++|||+|||+.+|+++|.++|++| | .|..+.+. .++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 67777664 34799999999999999999 7999999
Q ss_pred CCeEEEEeeecCC
Q 011668 205 DGRRVLVDVERGR 217 (480)
Q Consensus 205 ~gr~l~V~~a~~~ 217 (480)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987653
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1.1e-12 Score=129.99 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=69.0
Q ss_pred CCCCCCCCCCEEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC-
Q 011668 129 DPNVSGDPYKTLFVAR--LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD- 205 (480)
Q Consensus 129 ~~~~~~~~~~~l~V~n--L~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~- 205 (480)
.......|+.+|||+| |++.+|+++|.++|++||+|..|.|+. .+|||||+|.+.++|++||..|||..|.
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3455567899999999 578999999999999999999988754 4689999999999999999999999873
Q ss_pred --Ce--EEEEeeec
Q 011668 206 --GR--RVLVDVER 215 (480)
Q Consensus 206 --gr--~l~V~~a~ 215 (480)
|+ .|.|.|+.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 44 57777764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-12 Score=103.63 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=63.1
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEE
Q 011668 137 YKTLFVARLS-------YETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 209 (480)
Q Consensus 137 ~~~l~V~nL~-------~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l 209 (480)
...|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566666543 458999999999999999999997 46789999999999999999997554 689999
Q ss_pred EEeeecCCC
Q 011668 210 LVDVERGRT 218 (480)
Q Consensus 210 ~V~~a~~~~ 218 (480)
+|.|+....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=6.1e-12 Score=105.02 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCC----------HHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCcee
Q 011668 135 DPYKTLFVARLSYETT----------ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 204 (480)
Q Consensus 135 ~~~~~l~V~nL~~~~t----------e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i 204 (480)
.|+++|.|.||-.... +++|.++|++||.|..|.|+.+. ++|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999743221 35789999999999999997653 589999999999999999999999999
Q ss_pred CCeEEEEeeecC
Q 011668 205 DGRRVLVDVERG 216 (480)
Q Consensus 205 ~gr~l~V~~a~~ 216 (480)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999753
No 205
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=3.3e-10 Score=116.73 Aligned_cols=15 Identities=0% Similarity=-0.150 Sum_probs=6.8
Q ss_pred EEEEEechhhHHHHH
Q 011668 182 AFIEYMHTRDMKAAY 196 (480)
Q Consensus 182 afV~F~~~~~a~~A~ 196 (480)
.|....+...|..+|
T Consensus 150 ~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 150 EYEHERDMHSAYKHA 164 (437)
T ss_pred eeccHHHHHHHHHHc
Confidence 344444444444444
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=7.9e-11 Score=98.54 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEec-hhhHHHHHHHcC--CceeCCe
Q 011668 132 VSGDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH-TRDMKAAYKQAD--GRKLDGR 207 (480)
Q Consensus 132 ~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~-~~~a~~A~~~l~--g~~i~gr 207 (480)
..-.+++.|||+||++. ++.++|+++|++||+|.+|.|+.+.. .|||.|.+ ..+|..|+..|| +..|+|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44557899999999999 99999999999999999999988754 69999999 799999999994 7889999
Q ss_pred EEEEeeec
Q 011668 208 RVLVDVER 215 (480)
Q Consensus 208 ~l~V~~a~ 215 (480)
.++|++..
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 99888754
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=9.7e-11 Score=91.95 Aligned_cols=74 Identities=18% Similarity=0.378 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCC----CC-CH---HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC
Q 011668 134 GDPYKTLFVARLSY----ET-TE---SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205 (480)
Q Consensus 134 ~~~~~~l~V~nL~~----~~-te---~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~ 205 (480)
++|..||+|.-++. ++ .+ .+|.+.|.+||+|..++|+.+ .+||+|.+.++|.+||. |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 45677898888762 23 32 578999999999999999875 38999999999999999 9999999
Q ss_pred CeEEEEeeecC
Q 011668 206 GRRVLVDVERG 216 (480)
Q Consensus 206 gr~l~V~~a~~ 216 (480)
|+.|+|+++.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=5.2e-10 Score=88.18 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=63.4
Q ss_pred CCCCCCEEEEcCCCCC------CCH---HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 133 SGDPYKTLFVARLSYE------TTE---SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 133 ~~~~~~~l~V~nL~~~------~te---~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
.++|..||+|..++.. ..+ .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567789999988742 332 4688999999999999999863 9999999999999999 99999
Q ss_pred eCCeEEEEeeec
Q 011668 204 LDGRRVLVDVER 215 (480)
Q Consensus 204 i~gr~l~V~~a~ 215 (480)
|+|+.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999754
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=4.6e-09 Score=98.17 Aligned_cols=79 Identities=20% Similarity=0.382 Sum_probs=65.8
Q ss_pred CCEEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEecccC----CCCCccceEEEEEechhhHHHHHHHcCCceeCCe
Q 011668 137 YKTLFVARLSY-----ETTESKIKREFESYGPIKRVRLVTDK----ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 207 (480)
Q Consensus 137 ~~~l~V~nL~~-----~~te~~L~~~F~~~G~i~~v~i~~d~----~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr 207 (480)
...|.+.|+-. .-.+++|.+.|++||.|..|.|+.+. .++.++||+||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34566655422 23457899999999999999998543 4568999999999999999999999999999999
Q ss_pred EEEEeeec
Q 011668 208 RVLVDVER 215 (480)
Q Consensus 208 ~l~V~~a~ 215 (480)
.|.|.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=9.8e-07 Score=70.87 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFESY-----GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~-----G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
..++|-|-|||..++...|+.|++.+ |.|+.|.+..+. +-|+|+|.+...|.+|.-.|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 999999998875 4799999999999999988999999999999
Q ss_pred Eee
Q 011668 211 VDV 213 (480)
Q Consensus 211 V~~ 213 (480)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=4.1e-05 Score=61.32 Aligned_cols=75 Identities=9% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEE
Q 011668 137 YKTLFVARLSYET-T----ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 211 (480)
Q Consensus 137 ~~~l~V~nL~~~~-t----e~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V 211 (480)
.++|+|+||+..+ + .+.|+++|..|+++..+.+... -.=..|.|.+.++|.+|-..|++..|+|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 2 2578999999999888776543 125689999999999999999999999999999
Q ss_pred eeecCC
Q 011668 212 DVERGR 217 (480)
Q Consensus 212 ~~a~~~ 217 (480)
.|+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.56 E-value=0.00046 Score=54.24 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCC--ccceEEEEEechhhHHHHHHHcCCceeCC-----eEEE
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNK--PRGYAFIEYMHTRDMKAAYKQADGRKLDG-----RRVL 210 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~--~~g~afV~F~~~~~a~~A~~~l~g~~i~g-----r~l~ 210 (480)
++|.|.+||+.+|++++.+.++.+..+....++....+.. .-.-|||.|.+.+++......++|+.|-+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999998887777665543333 23578999999999999999999988732 2345
Q ss_pred Eeeec
Q 011668 211 VDVER 215 (480)
Q Consensus 211 V~~a~ 215 (480)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00037 Score=54.87 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
...++| ++|+.+...+|.++|+.||.| .|.++.| ..|||.|.+.+.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 456777 999999999999999999965 4666665 38999999999999999876
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0032 Score=50.17 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc----C-CCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEE
Q 011668 136 PYKTLFVARLSYETTESKIKREFES----Y-GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 210 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~----~-G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~ 210 (480)
-.++|.|.|||+.+.++.|.-+|+. . |+|..|.... +-|+|+|.+...|+..|. -..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3578999999999999999999987 2 5888887743 478999999999999987 336788999998
Q ss_pred Eeeec
Q 011668 211 VDVER 215 (480)
Q Consensus 211 V~~a~ 215 (480)
|.-..
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 86544
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00069 Score=53.49 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=45.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~ 200 (480)
..++| ++|+.+...+|..+|+.||.| .|.++.| ..|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999944 5777765 379999999999999999764
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.0017 Score=53.47 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCC-eEEEEeee
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-RRVLVDVE 214 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~g-r~l~V~~a 214 (480)
.+-|.|-++|+.. ...|..+|++||+|....... ...+-.|.|.+..+|++||. .||..|+| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4578899999875 577899999999999887632 23589999999999999999 79999985 55666654
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.83 E-value=0.0019 Score=51.12 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCc--cceEEEEEechhhHHHHHHHcCCceeCC-----eEEE
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKP--RGYAFIEYMHTRDMKAAYKQADGRKLDG-----RRVL 210 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~--~g~afV~F~~~~~a~~A~~~l~g~~i~g-----r~l~ 210 (480)
-+|.|..||+.+|++++.+.++.+-++....++....+.+. -.-|||.|.+.+++......++|..|-+ -...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 47999999999999998888877655533333332222221 2568999999999999999999988632 2455
Q ss_pred Eeee
Q 011668 211 VDVE 214 (480)
Q Consensus 211 V~~a 214 (480)
|++|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.22 E-value=0.0051 Score=51.28 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=54.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEeccc--------CCCC-----CccceEEEEEechhhHHHHHHHcCCce
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKR-VRLVTD--------KETN-----KPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d--------~~t~-----~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
.-|.|-+.|+..+ ..|...|++||.|.. +.+... ..+. ...++..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577888877654 568889999999876 222110 0000 123577999999999999999 79999
Q ss_pred eCCeEEEEeeec
Q 011668 204 LDGRRVLVDVER 215 (480)
Q Consensus 204 i~gr~l~V~~a~ 215 (480)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777654
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.27 E-value=0.009 Score=61.02 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=41.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHH
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 197 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~ 197 (480)
++|||. .+..+++.+|.++|++||.|..+.+-.+. ..||+|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 589998 78899999999999999999999886543 2699999999999997765
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.52 E-value=0.018 Score=49.76 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=29.1
Q ss_pred EEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 166 RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 166 ~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
.+.|+.+. ..++|||||+|.+.++|++||..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 45666664 3689999999999999999998877643
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.76 E-value=0.016 Score=49.82 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=36.7
Q ss_pred CCccceEEEEEechhhHHHHHHHc-CCceeCCeEEEEeeecC
Q 011668 176 NKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVDVERG 216 (480)
Q Consensus 176 ~~~~g~afV~F~~~~~a~~A~~~l-~g~~i~gr~l~V~~a~~ 216 (480)
...+|+++|+|.+.++|++|+..| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 9999999 999998764
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.21 E-value=1.2 Score=46.15 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcC
Q 011668 137 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 200 (480)
Q Consensus 137 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~ 200 (480)
..+++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3566776 88889999999999999965 6666654 379999999999999999875
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.48 E-value=4.7 Score=29.68 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=42.2
Q ss_pred EEEEcC-CCCCCCHHHHHHHhhcCC-----CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEe
Q 011668 139 TLFVAR-LSYETTESKIKREFESYG-----PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 212 (480)
Q Consensus 139 ~l~V~n-L~~~~te~~L~~~F~~~G-----~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~ 212 (480)
+|||.. --..+...+|..++..-+ .|-.|.|.. .|.||+... ..+..++..|++..+.|+.|.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566632 123456667777776544 355566643 389998875 45888899999999999999988
Q ss_pred eec
Q 011668 213 VER 215 (480)
Q Consensus 213 ~a~ 215 (480)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.58 E-value=25 Score=26.77 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc
Q 011668 136 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
..+-|-|-|||..+-..++.-...-.|---.|..+. |-|.|.|.+.++...||..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 457788999999999888887777788655666543 67999999999999998865
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=49.09 E-value=3.6 Score=32.93 Aligned_cols=18 Identities=6% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCCCCCHHH
Q 011668 136 PYKTLFVARLSYETTESK 153 (480)
Q Consensus 136 ~~~~l~V~nL~~~~te~~ 153 (480)
..++|||+|||+.+|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446799999999999763
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.09 E-value=25 Score=30.43 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=38.3
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hcCCCeeEEEecccCCCCCccceEEEEEech-hhHHHHHH
Q 011668 139 TLFVARLSY-E--------TTESKIKREF--ESYGPIKRVRLVTDKETNKPRGYAFIEYMHT-RDMKAAYK 197 (480)
Q Consensus 139 ~l~V~nL~~-~--------~te~~L~~~F--~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~-~~a~~A~~ 197 (480)
+++|.|++. . .....|.+.| ..|..+. |..+.+. ....|+++|.|..- .....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 678889887 2 3457899977 8898775 5555544 33568999999743 44555655
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=43.56 E-value=48 Score=25.30 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.1
Q ss_pred CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCc
Q 011668 163 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 202 (480)
Q Consensus 163 ~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~ 202 (480)
.|..+.++. ...||.||++...+++..+|..+.|.
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 466666653 36899999999988888888877764
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.99 E-value=88 Score=21.79 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=41.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHc
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 199 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l 199 (480)
.+|.|.|+.-..-...|...+.. ..|..+.+-. ..+-+.|+|.+.+....+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHc
Confidence 46889999888888899999988 7787777633 2356778887666677777743
No 229
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.95 E-value=73 Score=25.11 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.9
Q ss_pred CeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCce
Q 011668 163 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 203 (480)
Q Consensus 163 ~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~ 203 (480)
.|.++..+ ...+||-|||=....++..||..+.+..
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 46677654 3368999999999999999988776543
No 230
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.67 E-value=13 Score=31.48 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEe
Q 011668 152 SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 187 (480)
Q Consensus 152 ~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~ 187 (480)
++|.++|...|.|+.+. ..+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 34556777777775442 24689999976
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.79 E-value=85 Score=27.84 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=28.7
Q ss_pred eeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeC
Q 011668 164 IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 205 (480)
Q Consensus 164 i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~ 205 (480)
|.+|..+ ...+||-|||=.....+..||..+.+....
T Consensus 139 I~Si~~~-----d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQR-----DNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEECC-----TTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEec-----CCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 6666443 336899999999999999999988876443
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.19 E-value=58 Score=30.29 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRL 169 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i 169 (480)
..+.|+|||+.++...|..++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46899999999999999999977 65554443
No 233
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.44 E-value=31 Score=32.36 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=25.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRL 169 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i 169 (480)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46899999999999999999976555554444
No 234
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.32 E-value=1.5e+02 Score=23.00 Aligned_cols=64 Identities=8% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHh-hcCCCeeEEEecccCCCCCccceEEEEEechhhHHHHHHHcCCceeCCeEEEEeeecC
Q 011668 144 RLSYETTESKIKREF-ESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 216 (480)
Q Consensus 144 nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A~~~l~g~~i~gr~l~V~~a~~ 216 (480)
-++..+.-++|..-. ..||.-..+..+ +. -..|-..+.++..+||+.|+-. ..-+.|+|-+..+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 356678888876655 568887777665 21 3578889999999999987643 3333445544443
No 235
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=23.03 E-value=1.7e+02 Score=19.97 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=40.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecccCCCCCccceEEEEEe----chhhHHHHHHHc
Q 011668 138 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM----HTRDMKAAYKQA 199 (480)
Q Consensus 138 ~~l~V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~F~----~~~~a~~A~~~l 199 (480)
.+|.|.|+.-..-...|...+.....|..+.+-.. .+-+.|+|. +.+....+|..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36888898877677889999999877877776432 346788885 445666777643
Done!