Query 011669
Match_columns 480
No_of_seqs 359 out of 2736
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 1.7E-83 6E-88 660.5 48.6 423 53-479 20-454 (456)
2 4e3q_A Pyruvate transaminase; 100.0 3.5E-79 1.2E-83 630.7 41.4 413 62-479 26-467 (473)
3 4ao9_A Beta-phenylalanine amin 100.0 1.6E-72 5.6E-77 576.5 41.8 392 57-479 41-445 (454)
4 4ffc_A 4-aminobutyrate aminotr 100.0 1.3E-68 4.4E-73 554.3 47.8 419 54-479 21-448 (453)
5 3oks_A 4-aminobutyrate transam 100.0 2.9E-68 1E-72 551.4 46.8 422 54-479 18-450 (451)
6 3i5t_A Aminotransferase; pyrid 100.0 5E-68 1.7E-72 552.8 44.6 413 61-479 12-453 (476)
7 3hmu_A Aminotransferase, class 100.0 1.2E-67 4.2E-72 549.1 38.9 414 60-479 12-451 (472)
8 3n5m_A Adenosylmethionine-8-am 100.0 7.7E-65 2.6E-69 526.0 43.8 419 59-480 8-452 (452)
9 4a0g_A Adenosylmethionine-8-am 100.0 9E-67 3.1E-71 571.3 29.1 413 64-480 335-828 (831)
10 3gju_A Putative aminotransfera 100.0 1.1E-64 3.6E-69 526.1 43.0 416 62-479 8-455 (460)
11 3tfu_A Adenosylmethionine-8-am 100.0 1E-64 3.5E-69 525.3 42.2 404 57-480 27-453 (457)
12 4a6r_A Omega transaminase; tra 100.0 1.4E-64 4.9E-69 525.0 39.2 413 62-479 9-448 (459)
13 3dod_A Adenosylmethionine-8-am 100.0 6.3E-64 2.1E-68 518.6 39.6 411 62-479 4-442 (448)
14 1zod_A DGD, 2,2-dialkylglycine 100.0 2.8E-60 9.5E-65 488.9 42.4 418 59-479 5-431 (433)
15 3l44_A Glutamate-1-semialdehyd 100.0 1.7E-60 5.7E-65 490.8 40.4 408 57-479 5-429 (434)
16 3dxv_A Alpha-amino-epsilon-cap 100.0 4.8E-60 1.7E-64 488.1 43.5 412 61-479 7-424 (439)
17 1z7d_A Ornithine aminotransfer 100.0 1.1E-59 3.6E-64 484.8 42.9 391 58-479 27-428 (433)
18 4e77_A Glutamate-1-semialdehyd 100.0 6.2E-60 2.1E-64 485.9 40.6 407 59-480 6-429 (429)
19 2oat_A Ornithine aminotransfer 100.0 1.5E-59 5.1E-64 484.4 43.3 392 57-480 37-439 (439)
20 3k28_A Glutamate-1-semialdehyd 100.0 3.2E-60 1.1E-64 488.2 37.8 408 57-480 4-427 (429)
21 3i4j_A Aminotransferase, class 100.0 8.8E-60 3E-64 484.9 40.8 394 79-479 9-427 (430)
22 3fq8_A Glutamate-1-semialdehyd 100.0 3.7E-59 1.3E-63 479.8 40.4 409 57-480 3-427 (427)
23 2yky_A Beta-transaminase; tran 100.0 2.5E-64 8.6E-69 519.4 0.0 392 57-479 54-459 (465)
24 1ohv_A 4-aminobutyrate aminotr 100.0 1.6E-59 5.6E-64 488.2 36.0 405 55-480 22-471 (472)
25 3nx3_A Acoat, acetylornithine 100.0 4.4E-58 1.5E-62 466.8 40.3 373 78-480 15-395 (395)
26 2cjg_A L-lysine-epsilon aminot 100.0 1.5E-58 5E-63 478.5 33.2 400 61-479 18-447 (449)
27 2pb2_A Acetylornithine/succiny 100.0 1.6E-57 5.5E-62 466.8 36.3 388 61-479 22-417 (420)
28 2epj_A Glutamate-1-semialdehyd 100.0 1.7E-57 5.8E-62 468.5 36.2 409 56-479 8-430 (434)
29 2e7u_A Glutamate-1-semialdehyd 100.0 3.8E-56 1.3E-60 457.0 37.3 404 58-477 4-424 (424)
30 3a8u_X Omega-amino acid--pyruv 100.0 9.9E-56 3.4E-60 457.3 37.9 393 80-480 31-447 (449)
31 2eo5_A 419AA long hypothetical 100.0 9.7E-55 3.3E-59 445.9 42.3 398 60-480 3-418 (419)
32 2cy8_A D-phgat, D-phenylglycin 100.0 1.6E-54 5.3E-59 448.9 37.5 402 58-479 12-434 (453)
33 1s0a_A Adenosylmethionine-8-am 100.0 3.4E-53 1.2E-57 435.6 43.4 397 65-479 7-423 (429)
34 1sff_A 4-aminobutyrate aminotr 100.0 9.1E-53 3.1E-57 431.6 43.5 415 59-479 3-423 (426)
35 3ruy_A Ornithine aminotransfer 100.0 5.6E-53 1.9E-57 428.6 38.2 380 62-478 2-392 (392)
36 4adb_A Succinylornithine trans 100.0 3.9E-52 1.3E-56 424.0 40.2 374 78-479 18-399 (406)
37 2ord_A Acoat, acetylornithine 100.0 1E-48 3.5E-53 398.0 37.6 370 79-479 20-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 4.7E-48 1.6E-52 392.7 36.1 386 61-478 7-395 (395)
39 2eh6_A Acoat, acetylornithine 100.0 9.6E-46 3.3E-50 372.8 36.8 360 80-477 9-375 (375)
40 3l8a_A METC, putative aminotra 100.0 3E-41 1E-45 345.9 22.8 362 80-478 40-420 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 1.7E-37 5.7E-42 318.7 34.8 368 58-479 25-414 (427)
42 3dzz_A Putative pyridoxal 5'-p 100.0 1.2E-36 4.3E-41 307.6 26.0 360 83-480 11-389 (391)
43 3tqx_A 2-amino-3-ketobutyrate 100.0 1.4E-35 4.9E-40 300.7 32.8 350 79-480 24-396 (399)
44 1fc4_A 2-amino-3-ketobutyrate 100.0 2E-35 7E-40 300.1 30.9 351 79-480 25-397 (401)
45 3kax_A Aminotransferase, class 100.0 1.3E-35 4.3E-40 299.4 27.8 358 82-478 6-383 (383)
46 3fdb_A Beta C-S lyase, putativ 100.0 1.3E-35 4.5E-40 298.8 24.9 353 84-480 8-376 (377)
47 1d2f_A MALY protein; aminotran 100.0 8.4E-35 2.9E-39 294.6 30.1 359 84-479 8-388 (390)
48 4dq6_A Putative pyridoxal phos 100.0 1E-35 3.5E-40 300.9 22.5 357 83-478 11-391 (391)
49 3a2b_A Serine palmitoyltransfe 100.0 1.3E-33 4.5E-38 286.6 33.0 347 79-479 24-391 (398)
50 1c7n_A Cystalysin; transferase 100.0 4.2E-35 1.4E-39 297.6 20.5 355 84-479 9-392 (399)
51 3ftb_A Histidinol-phosphate am 100.0 9E-34 3.1E-38 283.7 29.5 343 82-480 8-361 (361)
52 1yiz_A Kynurenine aminotransfe 100.0 3.7E-34 1.3E-38 293.7 27.3 351 100-479 38-428 (429)
53 2zc0_A Alanine glyoxylate tran 100.0 3.4E-34 1.2E-38 291.7 22.6 346 97-479 32-403 (407)
54 1bs0_A Protein (8-amino-7-oxon 100.0 6.8E-33 2.3E-37 279.9 31.0 344 79-476 20-383 (384)
55 3kki_A CAI-1 autoinducer synth 100.0 1.4E-33 4.8E-38 287.6 25.5 338 86-479 46-403 (409)
56 3aow_A Putative uncharacterize 100.0 9.6E-34 3.3E-38 292.5 24.5 349 98-479 75-444 (448)
57 2zyj_A Alpha-aminodipate amino 100.0 3.8E-34 1.3E-38 290.6 19.1 343 98-479 31-392 (397)
58 3h14_A Aminotransferase, class 100.0 3.4E-33 1.2E-37 282.9 25.9 339 96-479 28-381 (391)
59 3jtx_A Aminotransferase; NP_28 100.0 7.9E-34 2.7E-38 287.8 21.0 355 82-477 13-395 (396)
60 3nra_A Aspartate aminotransfer 100.0 3.9E-34 1.3E-38 291.0 18.0 359 84-479 21-404 (407)
61 3b1d_A Betac-S lyase; HET: PLP 100.0 1.5E-36 5.1E-41 307.9 0.0 355 83-478 13-391 (392)
62 3ly1_A Putative histidinol-pho 100.0 8.2E-33 2.8E-37 276.1 26.8 338 88-479 5-351 (354)
63 2dou_A Probable N-succinyldiam 100.0 2.4E-33 8.2E-38 282.5 22.5 336 96-477 22-375 (376)
64 1lc5_A COBD, L-threonine-O-3-p 100.0 2.9E-33 1E-37 280.7 22.2 333 95-479 20-359 (364)
65 1vp4_A Aminotransferase, putat 100.0 8.7E-34 3E-38 290.7 18.3 349 98-479 42-417 (425)
66 3b46_A Aminotransferase BNA3; 100.0 5.7E-33 1.9E-37 286.7 23.7 345 97-475 55-442 (447)
67 3euc_A Histidinol-phosphate am 100.0 3.3E-32 1.1E-36 273.2 27.5 331 98-478 29-366 (367)
68 3ezs_A Aminotransferase ASPB; 100.0 9.9E-33 3.4E-37 277.8 22.5 334 96-479 21-374 (376)
69 2x5d_A Probable aminotransfera 100.0 8.2E-33 2.8E-37 282.2 22.2 343 96-479 34-397 (412)
70 3fvs_A Kynurenine--oxoglutarat 100.0 6.1E-32 2.1E-36 276.3 27.6 355 99-480 28-422 (422)
71 3dyd_A Tyrosine aminotransfera 100.0 4.3E-32 1.5E-36 278.4 26.4 349 95-479 50-423 (427)
72 3ffh_A Histidinol-phosphate am 100.0 1.2E-31 4E-36 268.7 28.2 326 98-477 31-363 (363)
73 2o1b_A Aminotransferase, class 100.0 1.7E-32 5.8E-37 279.3 21.6 338 96-479 44-402 (404)
74 3piu_A 1-aminocyclopropane-1-c 100.0 2.1E-32 7.3E-37 281.2 22.2 355 94-479 31-431 (435)
75 1gd9_A Aspartate aminotransfer 100.0 5E-32 1.7E-36 274.0 23.8 338 99-479 26-385 (389)
76 1j32_A Aspartate aminotransfer 100.0 7E-32 2.4E-36 272.8 24.7 343 97-479 28-386 (388)
77 2z61_A Probable aspartate amin 100.0 1.8E-31 6.3E-36 268.1 26.2 327 97-479 27-370 (370)
78 1v2d_A Glutamine aminotransfer 100.0 5E-32 1.7E-36 273.3 21.9 330 101-479 27-370 (381)
79 1o4s_A Aspartate aminotransfer 100.0 7.4E-32 2.5E-36 273.1 23.2 335 97-479 39-388 (389)
80 3g0t_A Putative aminotransfera 100.0 5.4E-32 1.9E-36 278.0 21.6 357 82-479 27-436 (437)
81 1u08_A Hypothetical aminotrans 100.0 2.3E-31 7.9E-36 268.9 24.6 335 100-475 31-385 (386)
82 3fkd_A L-threonine-O-3-phospha 100.0 4.5E-31 1.5E-35 263.3 25.7 329 86-479 2-341 (350)
83 3cq5_A Histidinol-phosphate am 100.0 4.1E-30 1.4E-34 258.3 32.2 324 102-478 33-366 (369)
84 3e2y_A Kynurenine-oxoglutarate 100.0 4.4E-31 1.5E-35 268.8 25.4 348 99-475 23-408 (410)
85 2o0r_A RV0858C (N-succinyldiam 100.0 1.9E-31 6.3E-36 272.1 22.4 340 101-479 27-395 (411)
86 3qgu_A LL-diaminopimelate amin 100.0 2.8E-31 9.4E-36 274.0 23.3 347 95-479 65-439 (449)
87 1iay_A ACC synthase 2, 1-amino 100.0 4E-31 1.4E-35 271.1 23.4 346 100-479 37-426 (428)
88 1xi9_A Putative transaminase; 100.0 2.8E-31 9.7E-36 270.3 21.8 343 95-479 34-402 (406)
89 3hdo_A Histidinol-phosphate am 100.0 1.1E-30 3.7E-35 261.6 25.6 327 96-478 23-353 (360)
90 3op7_A Aminotransferase class 100.0 2E-30 7E-35 260.8 26.2 303 140-479 62-370 (375)
91 3ele_A Amino transferase; RER0 100.0 1E-30 3.5E-35 265.1 24.1 336 98-479 34-395 (398)
92 2gb3_A Aspartate aminotransfer 100.0 2.5E-30 8.6E-35 263.6 25.2 338 96-479 40-401 (409)
93 2x5f_A Aspartate_tyrosine_phen 100.0 1.8E-31 6.2E-36 273.8 14.7 342 99-479 47-428 (430)
94 1elu_A L-cysteine/L-cystine C- 100.0 6.3E-30 2.2E-34 258.1 25.1 333 97-476 15-388 (390)
95 2bwn_A 5-aminolevulinate synth 100.0 9E-29 3.1E-33 251.2 33.3 333 97-479 44-399 (401)
96 3get_A Histidinol-phosphate am 100.0 2E-29 6.8E-34 252.7 26.8 327 99-478 30-365 (365)
97 1fg7_A Histidinol phosphate am 100.0 6.2E-30 2.1E-34 256.0 23.0 317 98-476 28-354 (356)
98 1ajs_A Aspartate aminotransfer 100.0 8E-31 2.7E-35 267.3 16.6 343 97-480 28-411 (412)
99 2q7w_A Aspartate aminotransfer 100.0 5.9E-31 2E-35 266.6 15.4 345 93-477 20-396 (396)
100 3asa_A LL-diaminopimelate amin 100.0 6.1E-30 2.1E-34 260.0 21.3 335 98-479 32-392 (400)
101 1bw0_A TAT, protein (tyrosine 100.0 9E-30 3.1E-34 259.9 21.4 346 99-479 33-412 (416)
102 1kmj_A Selenocysteine lyase; p 100.0 1.3E-28 4.3E-33 249.8 29.7 323 114-479 33-404 (406)
103 2ay1_A Aroat, aromatic amino a 100.0 1.2E-30 4.3E-35 264.2 14.2 339 97-476 24-392 (394)
104 1b5p_A Protein (aspartate amin 100.0 7.4E-29 2.5E-33 250.7 26.9 342 97-479 29-384 (385)
105 3f9t_A TDC, L-tyrosine decarbo 100.0 4.5E-28 1.5E-32 244.6 32.2 321 115-478 41-396 (397)
106 2r2n_A Kynurenine/alpha-aminoa 100.0 1.8E-28 6.1E-33 251.3 28.0 310 139-479 80-423 (425)
107 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.8E-29 6.1E-34 253.2 18.9 333 98-480 8-370 (371)
108 3ez1_A Aminotransferase MOCR f 100.0 9.7E-30 3.3E-34 260.3 17.2 344 101-479 27-414 (423)
109 3ei9_A LL-diaminopimelate amin 100.0 6.3E-29 2.2E-33 255.0 22.9 344 95-477 52-425 (432)
110 2dr1_A PH1308 protein, 386AA l 100.0 5E-28 1.7E-32 243.8 27.5 329 99-479 20-378 (386)
111 1t3i_A Probable cysteine desul 100.0 1.5E-27 5.2E-32 243.1 31.2 337 96-479 24-412 (420)
112 1vjo_A Alanine--glyoxylate ami 100.0 3E-28 1E-32 246.5 25.5 328 97-478 32-393 (393)
113 1eg5_A Aminotransferase; PLP-d 100.0 8.7E-28 3E-32 241.7 26.9 331 100-479 3-375 (384)
114 3d6k_A Putative aminotransfera 100.0 2.7E-29 9.3E-34 257.1 15.7 343 101-479 34-417 (422)
115 3ppl_A Aspartate aminotransfer 100.0 2.4E-29 8.1E-34 257.9 15.1 345 101-479 35-419 (427)
116 3g7q_A Valine-pyruvate aminotr 100.0 1.6E-28 5.3E-33 250.5 20.2 347 99-479 31-412 (417)
117 1qz9_A Kynureninase; kynurenin 100.0 1.6E-27 5.6E-32 242.9 27.6 331 97-479 27-401 (416)
118 1m32_A 2-aminoethylphosphonate 100.0 1.2E-27 4E-32 239.0 25.0 333 100-480 4-365 (366)
119 3if2_A Aminotransferase; YP_26 100.0 1.7E-28 5.9E-33 252.6 19.4 351 99-479 31-439 (444)
120 3p1t_A Putative histidinol-pho 100.0 4.1E-27 1.4E-31 232.9 28.1 318 97-478 14-335 (337)
121 3lvm_A Cysteine desulfurase; s 100.0 1.6E-27 5.6E-32 243.4 25.9 333 95-479 19-398 (423)
122 3t18_A Aminotransferase class 100.0 1.5E-27 5.2E-32 243.2 25.6 338 98-478 36-408 (413)
123 4f4e_A Aromatic-amino-acid ami 100.0 1.8E-28 6.2E-33 250.8 18.6 339 100-478 50-420 (420)
124 3rq1_A Aminotransferase class 100.0 9E-28 3.1E-32 245.3 23.1 339 98-480 37-415 (418)
125 3kgw_A Alanine-glyoxylate amin 100.0 1.2E-27 4.1E-32 241.5 22.5 318 116-479 34-387 (393)
126 3fsl_A Aromatic-amino-acid ami 100.0 4.8E-28 1.6E-32 245.3 18.5 338 100-477 27-397 (397)
127 3ke3_A Putative serine-pyruvat 100.0 2.5E-27 8.6E-32 239.1 22.8 333 92-479 5-375 (379)
128 3zrp_A Serine-pyruvate aminotr 100.0 6.2E-27 2.1E-31 235.5 24.3 317 116-479 13-362 (384)
129 3nnk_A Ureidoglycine-glyoxylat 100.0 9.9E-27 3.4E-31 236.5 25.8 320 116-479 24-389 (411)
130 3f0h_A Aminotransferase; RER07 100.0 1.2E-26 4E-31 233.2 24.7 320 116-479 30-373 (376)
131 1uu1_A Histidinol-phosphate am 100.0 3.3E-27 1.1E-31 233.9 20.3 310 99-476 19-334 (335)
132 2z9v_A Aspartate aminotransfer 100.0 1.9E-26 6.5E-31 233.0 26.2 331 98-479 8-370 (392)
133 1yaa_A Aspartate aminotransfer 99.9 8.3E-28 2.8E-32 245.0 14.8 343 97-479 27-410 (412)
134 3cai_A Possible aminotransfera 99.9 1.1E-25 3.8E-30 228.6 30.0 330 97-475 25-404 (406)
135 1ax4_A Tryptophanase; tryptoph 99.9 6.9E-27 2.4E-31 242.2 21.4 353 97-479 41-440 (467)
136 2huf_A Alanine glyoxylate amin 99.9 2.2E-26 7.5E-31 232.6 23.8 332 96-479 16-382 (393)
137 1svv_A Threonine aldolase; str 99.9 1.3E-26 4.3E-31 231.1 21.4 329 101-479 15-357 (359)
138 2dkj_A Serine hydroxymethyltra 99.9 3.6E-26 1.2E-30 232.1 23.0 333 99-479 23-387 (407)
139 3isl_A Purine catabolism prote 99.9 1.1E-25 3.9E-30 229.0 25.6 324 113-479 15-389 (416)
140 2oqx_A Tryptophanase; lyase, p 99.9 2.1E-26 7E-31 238.6 19.4 349 98-479 40-441 (467)
141 2yrr_A Aminotransferase, class 99.9 2.7E-26 9.4E-31 227.9 19.2 317 115-479 10-352 (353)
142 1iug_A Putative aspartate amin 99.9 6.2E-26 2.1E-30 225.6 20.4 315 115-479 11-347 (352)
143 4eb5_A Probable cysteine desul 99.9 3.4E-25 1.2E-29 222.7 25.6 327 100-479 2-372 (382)
144 4hvk_A Probable cysteine desul 99.9 4.1E-25 1.4E-29 221.7 26.1 327 100-479 2-372 (382)
145 3f6t_A Aspartate aminotransfer 99.9 2.1E-26 7.1E-31 242.4 16.7 343 110-479 110-524 (533)
146 1v72_A Aldolase; PLP-dependent 99.9 1.2E-25 4.2E-30 223.8 21.3 328 98-479 6-352 (356)
147 3vax_A Putative uncharacterize 99.9 6.4E-26 2.2E-30 229.8 19.3 334 93-479 15-399 (400)
148 2ch1_A 3-hydroxykynurenine tra 99.9 2.3E-25 8E-30 225.3 22.8 318 116-479 29-382 (396)
149 3meb_A Aspartate aminotransfer 99.9 4.7E-26 1.6E-30 234.9 17.6 338 101-479 51-443 (448)
150 3mad_A Sphingosine-1-phosphate 99.9 1E-24 3.6E-29 228.8 27.7 324 115-479 107-468 (514)
151 2ez2_A Beta-tyrosinase, tyrosi 99.9 5.2E-25 1.8E-29 227.4 24.3 343 97-479 40-430 (456)
152 3a9z_A Selenocysteine lyase; P 99.9 9.1E-25 3.1E-29 223.8 25.9 347 96-479 16-427 (432)
153 3e9k_A Kynureninase; kynurenin 99.9 2.6E-25 8.9E-30 230.4 21.4 344 97-479 66-460 (465)
154 2rfv_A Methionine gamma-lyase; 99.9 1.9E-24 6.5E-29 219.4 25.4 316 115-476 37-396 (398)
155 4eu1_A Mitochondrial aspartate 99.9 1E-25 3.5E-30 229.4 15.7 333 100-478 42-409 (409)
156 2oga_A Transaminase; PLP-depen 99.9 9.9E-25 3.4E-29 221.5 22.8 333 87-480 18-396 (399)
157 1cs1_A CGS, protein (cystathio 99.9 4E-24 1.4E-28 216.0 26.2 296 133-477 44-384 (386)
158 3tcm_A Alanine aminotransferas 99.9 1E-24 3.5E-29 228.0 22.0 338 116-479 107-493 (500)
159 3qhx_A Cystathionine gamma-syn 99.9 1.5E-23 5.2E-28 212.4 26.1 289 133-473 58-391 (392)
160 2vi8_A Serine hydroxymethyltra 99.9 1.1E-23 3.7E-28 213.7 24.9 333 99-479 24-386 (405)
161 7aat_A Aspartate aminotransfer 99.9 2E-24 6.9E-29 219.1 19.2 337 101-478 30-401 (401)
162 2cb1_A O-acetyl homoserine sul 99.9 4.2E-23 1.4E-27 210.5 28.3 305 112-475 29-411 (412)
163 1jg8_A L-ALLO-threonine aldola 99.9 6E-24 2.1E-28 211.1 21.4 332 99-479 3-345 (347)
164 2zy4_A L-aspartate beta-decarb 99.9 2.4E-24 8.1E-29 227.0 19.4 351 101-479 106-521 (546)
165 3uwc_A Nucleotide-sugar aminot 99.9 2E-24 6.8E-29 216.9 17.4 316 110-479 8-370 (374)
166 2bkw_A Alanine-glyoxylate amin 99.9 1.3E-23 4.6E-28 211.3 22.4 318 116-480 16-384 (385)
167 1mdo_A ARNB aminotransferase; 99.9 2.5E-23 8.4E-28 210.3 24.1 310 117-479 19-385 (393)
168 1gc0_A Methionine gamma-lyase; 99.9 5.3E-23 1.8E-27 208.8 26.0 291 133-476 57-397 (398)
169 3h7f_A Serine hydroxymethyltra 99.9 2.2E-23 7.4E-28 214.9 23.2 324 115-479 56-413 (447)
170 1wyu_B Glycine dehydrogenase s 99.9 1.1E-22 3.7E-27 211.2 28.0 316 113-478 75-439 (474)
171 3ihj_A Alanine aminotransferas 99.9 9.4E-23 3.2E-27 212.9 27.4 338 116-479 102-492 (498)
172 3gbx_A Serine hydroxymethyltra 99.9 4E-24 1.4E-28 217.8 15.9 319 115-479 41-395 (420)
173 3mc6_A Sphingosine-1-phosphate 99.9 9.1E-23 3.1E-27 213.0 23.9 323 115-479 75-436 (497)
174 3ecd_A Serine hydroxymethyltra 99.9 1.3E-22 4.4E-27 207.0 24.4 330 101-479 34-396 (425)
175 3pj0_A LMO0305 protein; struct 99.9 1E-23 3.5E-28 210.5 15.8 316 116-476 27-358 (359)
176 3acz_A Methionine gamma-lyase; 99.9 3E-22 1E-26 202.6 25.7 310 113-479 32-388 (389)
177 3lws_A Aromatic amino acid bet 99.9 1.4E-23 4.7E-28 209.5 15.5 335 99-477 3-356 (357)
178 1e5e_A MGL, methionine gamma-l 99.9 1.7E-22 6E-27 205.4 23.5 289 138-479 59-394 (404)
179 2fnu_A Aminotransferase; prote 99.9 2E-22 6.8E-27 202.1 23.4 309 115-479 10-371 (375)
180 3nyt_A Aminotransferase WBPE; 99.9 7.2E-23 2.5E-27 205.3 20.1 312 112-475 6-359 (367)
181 3ndn_A O-succinylhomoserine su 99.9 8.7E-23 3E-27 208.0 20.1 295 133-477 73-413 (414)
182 2qma_A Diaminobutyrate-pyruvat 99.9 1.4E-21 4.6E-26 204.2 29.6 350 95-480 97-496 (497)
183 3k7y_A Aspartate aminotransfer 99.9 5.3E-23 1.8E-27 208.9 17.6 336 100-479 30-404 (405)
184 2po3_A 4-dehydrase; external a 99.9 9.4E-22 3.2E-26 201.1 26.2 317 103-479 20-385 (424)
185 2aeu_A Hypothetical protein MJ 99.9 5.5E-23 1.9E-27 206.9 16.2 327 98-479 26-370 (374)
186 3frk_A QDTB; aminotransferase, 99.9 1E-22 3.6E-27 204.5 18.1 316 111-477 6-365 (373)
187 3dr4_A Putative perosamine syn 99.9 7.7E-23 2.6E-27 206.8 17.2 308 118-477 36-390 (391)
188 3n0l_A Serine hydroxymethyltra 99.9 8.6E-22 3E-26 200.4 24.8 331 101-479 27-388 (417)
189 1b9h_A AHBA synthase, protein 99.9 1.9E-21 6.4E-26 196.3 26.4 312 117-479 16-387 (388)
190 3ffr_A Phosphoserine aminotran 99.9 8.8E-22 3E-26 196.2 23.3 308 116-477 15-361 (362)
191 1pff_A Methionine gamma-lyase; 99.9 3.2E-22 1.1E-26 197.5 19.3 282 145-476 2-330 (331)
192 1o69_A Aminotransferase; struc 99.9 3.7E-21 1.3E-25 194.9 25.8 319 117-478 11-385 (394)
193 1ibj_A CBL, cystathionine beta 99.9 6.8E-22 2.3E-26 204.2 18.2 291 137-479 129-461 (464)
194 3nmy_A Xometc, cystathionine g 99.9 2.2E-21 7.4E-26 196.8 21.5 290 133-477 59-396 (400)
195 1qgn_A Protein (cystathionine 99.9 1.3E-20 4.4E-25 193.3 24.9 293 132-480 105-445 (445)
196 2ctz_A O-acetyl-L-homoserine s 99.9 6.7E-21 2.3E-25 194.7 22.6 290 133-477 50-420 (421)
197 1n8p_A Cystathionine gamma-lya 99.9 1.8E-20 6.2E-25 189.8 23.7 294 133-476 47-391 (393)
198 2c81_A Glutamine-2-deoxy-scyll 99.9 2.9E-20 9.8E-25 189.7 25.1 317 116-479 14-413 (418)
199 3cog_A Cystathionine gamma-lya 99.9 1.4E-20 5E-25 191.1 22.4 291 136-478 62-400 (403)
200 4h51_A Aspartate aminotransfer 99.9 7.6E-21 2.6E-25 193.3 19.5 322 118-479 65-416 (420)
201 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.3E-19 7.7E-24 181.3 29.1 305 116-473 13-389 (390)
202 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 7.6E-20 2.6E-24 187.8 25.2 326 97-478 29-434 (437)
203 3bwn_A AT1G70560, L-tryptophan 99.9 3.3E-21 1.1E-25 195.1 13.9 319 97-478 20-385 (391)
204 1w23_A Phosphoserine aminotran 99.8 2.6E-20 8.9E-25 185.7 18.7 321 100-479 3-359 (360)
205 2okj_A Glutamate decarboxylase 99.8 1.3E-18 4.4E-23 181.9 30.5 313 143-480 134-502 (504)
206 2c0r_A PSAT, phosphoserine ami 99.8 1.9E-19 6.5E-24 179.8 22.2 323 98-479 3-360 (362)
207 2jis_A Cysteine sulfinic acid 99.8 2E-18 6.7E-23 181.0 30.7 315 142-480 149-515 (515)
208 2dgk_A GAD-beta, GADB, glutama 99.8 3E-18 1E-22 176.6 29.7 327 116-479 54-433 (452)
209 2z67_A O-phosphoseryl-tRNA(SEC 99.8 6E-19 2E-23 182.1 24.4 299 142-477 134-455 (456)
210 2x3l_A ORN/Lys/Arg decarboxyla 99.8 1.7E-20 5.8E-25 193.1 11.9 287 139-479 55-352 (446)
211 2fyf_A PSAT, phosphoserine ami 99.8 4.6E-19 1.6E-23 179.6 21.5 310 116-480 51-398 (398)
212 2fq6_A Cystathionine beta-lyas 99.8 5.7E-19 2E-23 179.7 21.9 298 132-475 73-413 (415)
213 2hox_A ALLIIN lyase 1; cystein 99.8 4.8E-20 1.6E-24 188.7 12.2 323 97-479 54-424 (427)
214 3ri6_A O-acetylhomoserine sulf 99.8 1.3E-18 4.6E-23 177.7 21.9 290 133-477 74-429 (430)
215 1rv3_A Serine hydroxymethyltra 99.8 1.9E-18 6.6E-23 179.5 21.8 336 101-478 46-429 (483)
216 3hbx_A GAD 1, glutamate decarb 99.8 3.2E-17 1.1E-21 171.1 27.8 327 115-479 67-443 (502)
217 3ht4_A Aluminum resistance pro 99.8 1.1E-17 3.9E-22 170.8 21.2 294 115-440 35-345 (431)
218 3vp6_A Glutamate decarboxylase 99.8 2.1E-16 7.2E-21 165.2 30.8 335 117-478 108-503 (511)
219 3ju7_A Putative PLP-dependent 99.8 8E-17 2.7E-21 162.0 24.9 314 116-478 14-373 (377)
220 4e1o_A HDC, histidine decarbox 99.8 5.3E-16 1.8E-20 161.1 29.6 363 56-479 54-477 (481)
221 1js3_A DDC;, DOPA decarboxylas 99.8 6.9E-16 2.3E-20 160.5 30.5 326 119-479 89-473 (486)
222 2a7v_A Serine hydroxymethyltra 99.8 7.6E-17 2.6E-21 166.7 22.8 320 116-478 66-439 (490)
223 1wyu_A Glycine dehydrogenase ( 99.7 2.7E-16 9.4E-21 161.3 22.1 288 141-477 108-437 (438)
224 3k40_A Aromatic-L-amino-acid d 99.7 1.2E-15 4.2E-20 158.0 27.2 301 143-479 115-470 (475)
225 3e77_A Phosphoserine aminotran 99.7 9.2E-16 3.2E-20 153.3 19.6 322 114-479 22-374 (377)
226 3jzl_A Putative cystathionine 99.7 3.5E-15 1.2E-19 151.2 24.2 284 116-440 30-339 (409)
227 3i16_A Aluminum resistance pro 99.6 2.6E-14 8.8E-19 145.4 23.7 285 117-440 45-356 (427)
228 3hvy_A Cystathionine beta-lyas 99.6 4.8E-14 1.6E-18 143.4 25.3 284 116-439 45-355 (427)
229 3m5u_A Phosphoserine aminotran 99.6 8.9E-15 3E-19 145.6 19.3 313 116-479 16-359 (361)
230 3qm2_A Phosphoserine aminotran 99.6 2.3E-15 8E-20 151.2 14.6 322 99-479 27-384 (386)
231 1c4k_A Protein (ornithine deca 99.6 3.1E-14 1.1E-18 153.7 23.8 314 139-478 171-564 (730)
232 2vyc_A Biodegradative arginine 99.6 1.5E-13 5.3E-18 149.4 24.7 312 141-478 205-603 (755)
233 3n75_A LDC, lysine decarboxyla 99.4 1.8E-11 6.3E-16 131.1 22.2 310 139-476 193-556 (715)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.4 9.1E-11 3.1E-15 117.5 25.0 291 159-479 135-460 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.3 6.7E-10 2.3E-14 112.4 23.2 307 145-478 102-441 (450)
236 3ou5_A Serine hydroxymethyltra 98.6 4.1E-06 1.4E-10 83.8 20.7 330 115-478 65-439 (490)
237 3hix_A ALR3790 protein; rhodan 57.9 15 0.00051 28.3 5.0 55 146-202 41-95 (106)
238 1gmx_A GLPE protein; transfera 51.0 26 0.00087 26.9 5.4 54 144-200 46-99 (108)
239 1tks_A 3,4-dihydroxy-2-butanon 46.9 18 0.00062 31.7 4.2 36 254-293 159-194 (204)
240 3ilm_A ALR3790 protein; rhodan 46.6 20 0.00069 29.3 4.3 57 146-204 45-101 (141)
241 3gk5_A Uncharacterized rhodane 44.2 25 0.00085 27.1 4.3 56 144-203 43-98 (108)
242 1tq1_A AT5G66040, senescence-a 43.3 20 0.00068 28.7 3.7 45 153-199 78-122 (129)
243 3mio_A DHBP synthase, 3,4-dihy 42.6 30 0.001 30.4 4.9 36 254-293 158-194 (206)
244 2jtq_A Phage shock protein E; 39.1 80 0.0027 22.6 6.3 51 144-197 27-78 (85)
245 1k7c_A Rhamnogalacturonan acet 38.3 35 0.0012 30.3 4.9 53 240-292 111-167 (233)
246 2fsx_A RV0390, COG0607: rhodan 37.4 45 0.0015 27.2 5.1 41 157-199 80-120 (148)
247 3ij6_A Uncharacterized metal-d 35.9 2.7E+02 0.0091 25.8 13.8 54 235-294 108-161 (312)
248 1snn_A DHBP synthase, 3,4-dihy 35.2 38 0.0013 30.2 4.4 36 253-293 177-212 (227)
249 1g57_A DHBP synthase, 3,4-dihy 35.0 42 0.0014 29.8 4.6 35 254-293 167-201 (217)
250 3foj_A Uncharacterized protein 28.9 57 0.002 24.4 4.1 43 155-200 54-96 (100)
251 1vhx_A Putative holliday junct 28.8 50 0.0017 27.4 3.9 56 240-298 44-101 (150)
252 1pq4_A Periplasmic binding pro 28.7 2.6E+02 0.0089 25.6 9.4 41 241-292 224-264 (291)
253 3gi1_A LBP, laminin-binding pr 28.4 1.4E+02 0.0049 27.4 7.5 125 119-293 132-256 (286)
254 2k0z_A Uncharacterized protein 28.4 1.9E+02 0.0065 21.8 7.3 47 154-203 53-99 (110)
255 1vee_A Proline-rich protein fa 28.4 78 0.0027 25.2 5.0 49 146-196 61-111 (134)
256 3bzy_B ESCU; auto cleavage pro 26.3 37 0.0013 25.1 2.3 20 277-296 29-48 (83)
257 3ovp_A Ribulose-phosphate 3-ep 25.7 2.4E+02 0.0082 24.9 8.2 37 257-294 137-175 (228)
258 3g5j_A Putative ATP/GTP bindin 25.2 73 0.0025 24.9 4.3 55 142-199 74-129 (134)
259 1wv9_A Rhodanese homolog TT165 25.2 92 0.0031 22.8 4.6 38 158-198 54-91 (94)
260 1k4i_A 3,4-dihydroxy-2-butanon 24.8 76 0.0026 28.3 4.5 37 253-293 166-212 (233)
261 3eme_A Rhodanese-like domain p 24.7 69 0.0023 24.0 3.8 44 155-201 54-97 (103)
262 3rcm_A TATD family hydrolase; 24.5 1.4E+02 0.0047 27.5 6.6 27 157-183 30-56 (287)
263 3ecs_A Translation initiation 24.2 4.4E+02 0.015 24.6 11.3 118 144-293 109-228 (315)
264 3inp_A D-ribulose-phosphate 3- 23.5 2.8E+02 0.0095 24.9 8.2 37 257-294 159-201 (246)
265 2gwg_A 4-oxalomesaconate hydra 22.9 4.3E+02 0.015 24.5 10.1 51 240-293 125-177 (350)
266 3d1p_A Putative thiosulfate su 22.6 67 0.0023 25.7 3.6 42 157-200 91-132 (139)
267 1uar_A Rhodanese; sulfurtransf 22.5 1E+02 0.0036 28.0 5.3 54 144-198 219-273 (285)
268 3t7y_A YOP proteins translocat 21.7 50 0.0017 25.2 2.3 21 277-297 44-64 (97)
269 3aay_A Putative thiosulfate su 21.7 1.3E+02 0.0043 27.2 5.7 55 144-199 212-267 (277)
270 2vt1_B Surface presentation of 21.5 51 0.0018 24.9 2.3 21 277-297 29-49 (93)
271 3mil_A Isoamyl acetate-hydroly 21.2 1.6E+02 0.0054 25.3 6.1 18 275-292 150-167 (240)
272 3iwh_A Rhodanese-like domain p 20.9 85 0.0029 23.8 3.7 46 154-202 53-98 (103)
273 2o14_A Hypothetical protein YX 20.8 1.8E+02 0.0063 27.8 6.9 56 237-292 252-313 (375)
274 1ivn_A Thioesterase I; hydrola 20.7 40 0.0014 28.4 1.9 55 237-292 82-137 (190)
275 1qxn_A SUD, sulfide dehydrogen 20.6 87 0.003 25.1 3.9 49 154-204 79-127 (137)
276 3c01_E Surface presentation of 20.6 54 0.0018 25.1 2.3 21 277-297 29-49 (98)
277 3rjt_A Lipolytic protein G-D-S 20.2 55 0.0019 27.8 2.8 57 236-292 112-172 (216)
278 3d5a_X RF1, peptide chain rele 20.2 2.1E+02 0.0073 27.2 6.9 98 117-222 67-180 (354)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=1.7e-83 Score=660.52 Aligned_cols=423 Identities=31% Similarity=0.493 Sum_probs=374.2
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669 53 PPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~ 132 (480)
.++|||+++++++++++++.++... ..|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.
T Consensus 20 t~iPGP~s~~l~~r~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~ 97 (456)
T 4atq_A 20 GAFPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT 97 (456)
T ss_dssp SSSSCHHHHHHHHHHHHHBCTTCCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS
T ss_pred CCCCChHHHHHHHHHHHhCCCCCCC--CCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc
Confidence 3688999999999999999887654 34999999999999999999999999999999999999999999999999988
Q ss_pred ccccc-cCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC-
Q 011669 133 HSTVL-YLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209 (480)
Q Consensus 133 ~~~~~-~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~- 209 (480)
|.... ++++...+|+|+|++..|. .+++|+|+||||||||.|||+||.+++|.+||+|+++|||++.+++++++...
T Consensus 98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~ 177 (456)
T 4atq_A 98 HTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMP 177 (456)
T ss_dssp CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred CcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccc
Confidence 86543 4578889999999999986 47899999999999999999999999999999999999999999999987653
Q ss_pred ccccccC--CCeeEecCCCCcCCCCCC-ChHHHHHHHHHHHH-ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH
Q 011669 210 WKFNVVQ--TGVHHALNPDPYRGVFGA-DGEMYAKDVQDLID-FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK 285 (480)
Q Consensus 210 ~~~~~~~--~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~ 285 (480)
++....+ .++..++++.+++..... +.....+...+.++ ...++++|+||+||+||++|.++|+++||++|+++|+
T Consensus 178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~ 257 (456)
T 4atq_A 178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK 257 (456)
T ss_dssp TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence 3333332 578888888777655432 22222222222222 2335689999999999999999999999999999999
Q ss_pred HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669 286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (480)
Q Consensus 286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~ 365 (480)
+||++||+|||||||||+| ++|+++++|+.|||+|++|++|||+|+|++++++++++.+....|++||++||++|++++
T Consensus 258 ~~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal 336 (456)
T 4atq_A 258 EKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL 336 (456)
T ss_dssp HHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred hcCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence 9999999999999999999 899999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-----CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-----~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 440 (480)
++|++++++++.+++++++++++++|+++.+++ +.+++|||.|+|++++++.+. ++.|+......+.+.|+++|
T Consensus 337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~G 415 (456)
T 4atq_A 337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEG 415 (456)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999998876 568999999999999998754 45577777888999999999
Q ss_pred ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|++.+++..+++|||.||+++|+++||+++++|+++|+.
T Consensus 416 vl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 416 VIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999998888899999999999999999999999999975
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=3.5e-79 Score=630.72 Aligned_cols=413 Identities=28% Similarity=0.441 Sum_probs=359.8
Q ss_pred HHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-
Q 011669 62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV- 136 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~- 136 (480)
.+.+++++|.++..... .+.|++|++|+|+||||+|||+||||++|++++++||+||+|++|+.+|++++.+...
T Consensus 26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~ 105 (473)
T 4e3q_A 26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 105 (473)
T ss_dssp SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence 36677788887654322 2459999999999999999999999999999999999999999999999999865433
Q ss_pred -ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669 137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 137 -~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
.+.++...+|+|+|++..|.++++|+|+||||||||.|||+||.+ +++.+||+|+++|||.+.+++++++.+.
T Consensus 106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~ 185 (473)
T 4e3q_A 106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY 185 (473)
T ss_dssp TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence 345788999999999999988999999999999999999999976 5678999999999999999999998653
Q ss_pred cc-ccccCCCeeEecCCCCcCCCCCCC-hH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669 210 WK-FNVVQTGVHHALNPDPYRGVFGAD-GE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS 283 (480)
Q Consensus 210 ~~-~~~~~~g~~~~~~p~~~~~~~~~d-~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l 283 (480)
.+ +..+.+++.+++.|+.++.....+ .+ .+.+++++.+....++++|+||+||+||++|+++|+++||++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l 265 (473)
T 4e3q_A 186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI 265 (473)
T ss_dssp GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence 32 223347888888888776544332 22 2356777777766667899999999999999999999999999999
Q ss_pred HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc-------CCCccccCC
Q 011669 284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFNTFG 355 (480)
Q Consensus 284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~-------~~~~~~t~~ 355 (480)
|+|||++||+||||||||||| ++|+++++|+.||++|++|+++|| +|+|++++++++++.+. ...|++||+
T Consensus 266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999999999999999 899999999999999999999988 89999999999988764 346889999
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHH
Q 011669 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYI 432 (480)
Q Consensus 356 ~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~ 432 (480)
+||++|++++++|++++++++.+++++++++|+++|+++. +++.+.++||.|+|++++++.+..++.|. ......+
T Consensus 345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~ 423 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI 423 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999986 45779999999999999999887665542 2346778
Q ss_pred HHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 433 MDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 433 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+.|+++||++.+.+ +.+||+||+++|++|+|+++++|+++|++
T Consensus 424 ~~~~~~~Gll~~~~g---~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 424 ANTCTDLGLICRPLG---QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEEecC---CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 78999999999999999999999998875
No 3
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=1.6e-72 Score=576.48 Aligned_cols=392 Identities=24% Similarity=0.338 Sum_probs=337.5
Q ss_pred CCCHHHHHHHHhhhcCCcc----ccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669 57 GPSADEILAKRKTFLSPSL----FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~ 132 (480)
.|++++++++.+++++.+. ..|.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|++++.
T Consensus 41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~ 120 (454)
T 4ao9_A 41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI 120 (454)
T ss_dssp CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence 3678999999999985432 224456999999999999999999999999999999999999999999999999875
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
+.. .++....+++++|++.+|. +++|+|+|||||||+.|||+||.+++|++||+|+++|||++.+.++.++......
T Consensus 121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 197 (454)
T 4ao9_A 121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPF 197 (454)
T ss_dssp CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCC
Confidence 432 3456778999999999984 7999999999999999999999999999999999999999998877654322111
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
++...+ | +| .+.+++++++. .+++++||+||+||++|.++|+++||++|+++|+|||++||
T Consensus 198 -----~~~~~p--------~-nd----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI 258 (454)
T 4ao9_A 198 -----DFLVLP--------Y-ND----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV 258 (454)
T ss_dssp -----EEEEEC--------T-TC----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred -----CcccCC--------C-ch----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence 222222 2 34 57788888764 34899999999999999999999999999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVL 368 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L 368 (480)
+||||| ||+| .+|+++++|+.||++|++|++|||+|+|++++++++++.+.+. .|++||++||++|+|++++|
T Consensus 259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L 335 (454)
T 4ao9_A 259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL 335 (454)
T ss_dssp EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 999999 4999 7888999999999999999999999999999999999988653 37899999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCcee
Q 011669 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGVLV 443 (480)
Q Consensus 369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v 443 (480)
++++++++.+++++++++|+++|+++.++++.+.+++|.|+|++++|+.++.. ...+......+...|+++||++
T Consensus 336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~ 415 (454)
T 4ao9_A 336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS 415 (454)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence 99999999999999999999999999999999999999999999999764321 1123445567888999999999
Q ss_pred eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.|.+ ++.+++.+|++|||+++++|++++.+
T Consensus 416 ~p~~------~~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 416 SPRG------FVVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp CTTC------EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCC------CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 8753 24466789999999999999999875
No 4
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.3e-68 Score=554.33 Aligned_cols=419 Identities=35% Similarity=0.516 Sum_probs=369.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669 54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (480)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~ 133 (480)
..++|++.+++++.++++.++.. ...|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 98 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH 98 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence 46778899999999999877643 2568999999999999999999999999999999999999999999999998866
Q ss_pred cc-cccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cc
Q 011669 134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW 210 (480)
Q Consensus 134 ~~-~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~ 210 (480)
.. ..++++...+|+++|++.++.+ .++|+|+|||+|||+.|||+++.++++++||+++++|||++.+++++++.. .+
T Consensus 99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 178 (453)
T 4ffc_A 99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY 178 (453)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence 44 3577899999999999999854 579999999999999999999999999999999999999999999998764 44
Q ss_pred cccccC--CCeeEecCCCCcCCCCCCChHHHH----HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHH
Q 011669 211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYA----KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284 (480)
Q Consensus 211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~----~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~ 284 (480)
+..+.. .++..+++|.+++++++.+..... +.|++.+ .++++++||+||+|+++|.++++++|+++|+++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 255 (453)
T 4ffc_A 179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA 255 (453)
T ss_dssp TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence 443332 578888888888877765543322 3333333 2457999999999999999999999999999999
Q ss_pred HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHH
Q 011669 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG 364 (480)
Q Consensus 285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa 364 (480)
++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+.+||++||++++++
T Consensus 256 ~~~~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa 334 (453)
T 4ffc_A 256 SENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAA 334 (453)
T ss_dssp HHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHH
T ss_pred HHcCCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHH
Confidence 99999999999999999999 68888889999999999999999999999999999999988877889999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG 444 (480)
Q Consensus 365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 444 (480)
+++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.. ..++.|+......+.+.|+++||++.
T Consensus 335 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~ 413 (453)
T 4ffc_A 335 VAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLIL 413 (453)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEe
Confidence 99999988889999999999999999999988999899999999999999975 33344666667889999999999999
Q ss_pred ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++.+++++||+||+++|++++++++++|++++++
T Consensus 414 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 414 TCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp EECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 98877899999999999999999999999999865
No 5
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=2.9e-68 Score=551.43 Aligned_cols=422 Identities=32% Similarity=0.460 Sum_probs=368.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669 54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (480)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~ 133 (480)
..++|++.+++++.++++.++... ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 95 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGT--TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH 95 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred CCCCCcHHHHHHHHHhhccCCcCC--CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence 466789999999999998776432 468999999999999999999999999999999999999999999999998766
Q ss_pred cc-cccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cc
Q 011669 134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW 210 (480)
Q Consensus 134 ~~-~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~ 210 (480)
.. ..++++...+|+++|++.++.+ .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus 96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 44 3577899999999999999854 579999999999999999999999999999999999999999999998764 44
Q ss_pred cccccC--CCeeEecCCCCcCCCC-CCC----hHHHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669 211 KFNVVQ--TGVHHALNPDPYRGVF-GAD----GEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (480)
Q Consensus 211 ~~~~~~--~g~~~~~~p~~~~~~~-~~d----~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~ 282 (480)
+..... .++..++++.++++++ +.| ....++.+++.+++ ..++++++||+||+|+++|.+.++++|+++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 443332 5778888876665542 112 22234555555543 224589999999999999999999999999999
Q ss_pred HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHH
Q 011669 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362 (480)
Q Consensus 283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~a 362 (480)
+|++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+.+||++||++++
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 334 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA 334 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence 9999999999999999999999 688889999999999999999999999999999999999888778999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce
Q 011669 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL 442 (480)
Q Consensus 363 aa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 442 (480)
+++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.. ..++.|+......+.+.|+++||+
T Consensus 335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence 9999999988889999999999999999999988899899999999999999975 333446666678899999999999
Q ss_pred eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.+++.+++++||+||+++|+++|++++++|++++++
T Consensus 414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9998877899999999999999999999999999875
No 6
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=5e-68 Score=552.82 Aligned_cols=413 Identities=25% Similarity=0.407 Sum_probs=357.6
Q ss_pred HHHHHHHhhhcCCccccc--c--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669 61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~ 136 (480)
..+.++.++++++...+. + ..|+++++|+|+|+||.|||+||||++|++++++||+||+|++|+.+|++++.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~ 91 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP 91 (476)
T ss_dssp -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence 456777778877654322 2 258999999999999999999999999999999999999999999999999876554
Q ss_pred -ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669 137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 137 -~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
.+.++...+|+++|++.+|.+.++|+|+|||+|||+.||++++.+ +++++||+++++|||++.+++++++.+.
T Consensus 92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 171 (476)
T 3i5t_A 92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG 171 (476)
T ss_dssp TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence 578999999999999999877899999999999999999999988 8899999999999999999999998776
Q ss_pred cccccc--CCCeeEecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669 210 WKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS 283 (480)
Q Consensus 210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l 283 (480)
++.... ..++..+++|..+++ ++.+.+. ++++|++++++..++++++||+||+||++|.++++++||++|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l 250 (476)
T 3i5t_A 172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250 (476)
T ss_dssp GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence 554332 368888888888877 6544332 367888888754345899999999999999999999999999999
Q ss_pred HHHhCCEEEEcccccCccccCCCccccc-ccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------CccccC
Q 011669 284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTF 354 (480)
Q Consensus 284 ~~~~gillI~DEv~tgfgr~G~~~~~~~-~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t~ 354 (480)
|++||++||+||||+||||+| .+|+++ ++++.||++||||++++| +|+|++++++++++.+... .+++||
T Consensus 251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 999999999999999999999 788888 999999999999999999 9999999999999988764 577999
Q ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH---HHHH
Q 011669 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLY 431 (480)
Q Consensus 355 ~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~ 431 (480)
++||++|+|++++|+.++++++.++++++++++++.|+++. +++.+..+++.|+|+++++..+..++.+... ....
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence 99999999999999999888999999999999999999764 6788999999999999999765433333221 3567
Q ss_pred HHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 432 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.+.|+++||++.+.+ +++||+||+++|+++|++++++|++++++
T Consensus 409 ~~~~l~~~Gv~v~~~g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 409 IDERCFELGLIVRPLG---DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999864 89999999999999999999999998864
No 7
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.2e-67 Score=549.10 Aligned_cols=414 Identities=26% Similarity=0.420 Sum_probs=352.9
Q ss_pred HHHHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 011669 60 ADEILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-- 133 (480)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-- 133 (480)
..++.++.++++++..... ...|+++++|+|+|+||.|||+||||++|+++++|||+||+|++|+.+|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~ 91 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYN 91 (472)
T ss_dssp HHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 5677788888876654321 1358999999999999999999999999999999999999999999999998762
Q ss_pred cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccC
Q 011669 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ 207 (480)
Q Consensus 134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~ 207 (480)
....|+++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||++.+++++++.
T Consensus 92 ~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~ 171 (472)
T 3hmu_A 92 TFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGM 171 (472)
T ss_dssp SSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence 233577899999999999999887899999999999999999999987 47889999999999999999999886
Q ss_pred CCccccc-cCCCeeEecCCCCcC-CCCCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHH
Q 011669 208 SNWKFNV-VQTGVHHALNPDPYR-GVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY 281 (480)
Q Consensus 208 ~~~~~~~-~~~g~~~~~~p~~~~-~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~ 281 (480)
+.++..+ ...++..++.|..|+ +++ .|.+ .++++|++++++..++++++||+||+||++|.++++++||++|+
T Consensus 172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~ 250 (472)
T 3hmu_A 172 AGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ 250 (472)
T ss_dssp HHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred hhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence 5443221 335777888776555 222 2322 23677888887544458999999999999999999999999999
Q ss_pred HHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC--CccccCCCcH
Q 011669 282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNP 358 (480)
Q Consensus 282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~--~~~~t~~~~~ 358 (480)
++|++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+... .+++||++||
T Consensus 251 ~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np 329 (472)
T 3hmu_A 251 RICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHP 329 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCH
T ss_pred HHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCH
Confidence 99999999999999999999999 788889999999999999999987 8999999999999988433 5778999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC----HHHHHHHH
Q 011669 359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----KAETLYIM 433 (480)
Q Consensus 359 ~~~aaa~a~L~~i~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----~~~~~~~~ 433 (480)
++|+|++++|+.++++++.++++ +++++++++|+++. +++.+..+++.|+|+++++..+..++.+. ......+.
T Consensus 330 ~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (472)
T 3hmu_A 330 VAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICR 408 (472)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHH
Confidence 99999999999998889999999 99999999998874 57889999999999999997543333221 23456788
Q ss_pred HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.|+++||++.+++ +++||+||+++|+++|++++++|++++++
T Consensus 409 ~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 409 ERCFANNLIMRHVG---DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp HHHHHTTBCCEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999875 89999999999999999999999998864
No 8
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=7.7e-65 Score=526.02 Aligned_cols=419 Identities=31% Similarity=0.530 Sum_probs=361.5
Q ss_pred CHHHHHHHHhhhcCCcccccc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669 59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~ 137 (480)
++++++++.++++++.+..+. ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.++++++.|....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 87 (452)
T 3n5m_A 8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS 87 (452)
T ss_dssp HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 456788888899887433332 4689999999999999999999999999999999999999999999999987664445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---c---CCceEEEEcCCcccccccccccccCCCcc
Q 011669 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (480)
Q Consensus 138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 211 (480)
+.++...+++++|++.++.+.+ |+|+|||+|||+.|+++++.+ + ++++||+++++|||++.+++++++.+.++
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 7788999999999999987767 999999999999999999976 5 78899999999999999999998876554
Q ss_pred ccccC--CCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHH
Q 011669 212 FNVVQ--TGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSI 284 (480)
Q Consensus 212 ~~~~~--~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~ 284 (480)
..... .++..++.|+.++.+++++. ..++++|+++++...++++++||+||+ || +|.++++++|+++|+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 43322 57788888888888886432 224678888887323358999999999 89 999999999999999999
Q ss_pred HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC------CCccccCCCc
Q 011669 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR------RNYFNTFGGN 357 (480)
Q Consensus 285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~------~~~~~t~~~~ 357 (480)
++||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+.. ..+++||++|
T Consensus 246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 99999999999999999999 678889999999999999999999 999999999999998853 2367899999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC-HHHHHHHHHHH
Q 011669 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM 436 (480)
Q Consensus 358 ~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l 436 (480)
|+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++..+..+..+. ......+.+.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 99999999999998888899999999999999999998888889999999999999997654333222 23456788999
Q ss_pred HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 437 KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 437 ~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+++||++.+++.+ ++++||+||+++|+++|++++++|+++++++
T Consensus 405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999987632 5899999999999999999999999998764
No 9
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=9e-67 Score=571.35 Aligned_cols=413 Identities=19% Similarity=0.239 Sum_probs=336.2
Q ss_pred HHHHhhhcCCcccccc----CCCeEEEeeecc--EEEeCCCC----EEEeccCCcccccCCCC-CHHHHHHHHHHHHhcc
Q 011669 64 LAKRKTFLSPSLFHLY----SKPLNVVDGKMQ--YLFDENGR----RYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQ 132 (480)
Q Consensus 64 ~~~~~~~~~~~~~~~~----~~p~~~~~g~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~ 132 (480)
.++..+++++...... ..|++|++|+|. ||||.||| +|||+++|++++++||+ ||+|++|+.+|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 3445667665443221 248899999995 99999999 99999999999999999 9999999999999998
Q ss_pred cccc-ccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-Hhhc--------------CCceEEEEcCCcc
Q 011669 133 HSTV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMA-RLYT--------------GCNDIISLRNAYH 195 (480)
Q Consensus 133 ~~~~-~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~a-r~~~--------------~~~~ii~~~~~yh 195 (480)
|... .+.++...+|+++|++.+|.+ +++|||+||||||||.|||+| |.|+ ++.+||+++++||
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH 494 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH 494 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence 8643 456899999999999999865 789999999999999999999 5553 4678999999999
Q ss_pred cccccccccccCCCcccc------------ccC------CCeeEecCCCCcCCCCCC-----C--------------hHH
Q 011669 196 GNAAGTMGATAQSNWKFN------------VVQ------TGVHHALNPDPYRGVFGA-----D--------------GEM 238 (480)
Q Consensus 196 G~~~~~~~~~~~~~~~~~------------~~~------~g~~~~~~p~~~~~~~~~-----d--------------~~~ 238 (480)
|.+.+++++++.+.++.. .+. .++.++++|+.++....+ + ...
T Consensus 495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (831)
T 4a0g_A 495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI 574 (831)
T ss_dssp CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence 999999999986544330 000 244556677666543111 1 123
Q ss_pred HHHHHHHHHHc----cCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669 239 YAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (480)
Q Consensus 239 ~~~~le~~i~~----~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~ 313 (480)
+.+.|++.|+. ..++++++||+||+ ||+||+++++++||++|+++|++||++||+||||+||||+| ++|+++++
T Consensus 575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~ 653 (831)
T 4a0g_A 575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELL 653 (831)
T ss_dssp HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhc
Confidence 45778887763 23568999999997 99999999999999999999999999999999999999999 78899999
Q ss_pred CCCcceeeeccccccC-ccccccccCHHHHHhhcCC------CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011669 314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386 (480)
Q Consensus 314 ~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~ 386 (480)
|+.||++||||++++| +|+|++++++++++.+... .|++||++||++|++++++|++++++++.+++++++++
T Consensus 654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999 7999999999999988753 37899999999999999999999888888888776666
Q ss_pred HHH----HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669 387 LKE----RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462 (480)
Q Consensus 387 l~~----~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 462 (480)
+++ .+.+...+++.+.++++.|+|++++++.+.....+.......+.+.|+++||++.+. ++.|||+||+++|
T Consensus 734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t 810 (831)
T 4a0g_A 734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTS 810 (831)
T ss_dssp BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCC
Confidence 543 454555678999999999999999998653222223345677889999999999876 4899999999999
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 011669 463 KEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~~ 480 (480)
++|||+++++|+++++++
T Consensus 811 ~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 811 PEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 10
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.1e-64 Score=526.14 Aligned_cols=416 Identities=29% Similarity=0.433 Sum_probs=355.1
Q ss_pred HHHHHHhhhcCCccccc------cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 011669 62 EILAKRKTFLSPSLFHL------YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-- 133 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~------~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-- 133 (480)
++.+..++++++..... .+.|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 87 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH 87 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 46666777776654321 1245999999999999999999999999999999999999999999999998753
Q ss_pred cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccC
Q 011669 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ 207 (480)
Q Consensus 134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~ 207 (480)
....++++...+|+++|++.++.+.++|+|+|||+|||+.|+++++.+ +++++||+++++|||++.+++++++.
T Consensus 88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 223567889999999999999878889999999999999999999987 57899999999999999999999887
Q ss_pred CCccccccC--CCeeEecCCCCcCCCC-CCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHH
Q 011669 208 SNWKFNVVQ--TGVHHALNPDPYRGVF-GADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV 280 (480)
Q Consensus 208 ~~~~~~~~~--~g~~~~~~p~~~~~~~-~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l 280 (480)
+.++..+.. .++..++.|..|+++. +.+.+ .++++|++++++..++++++||+||+||++|.++++++|+++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 665544332 5788888877776542 22322 2357888888754345899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc-------CCCccc
Q 011669 281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFN 352 (480)
Q Consensus 281 ~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~-------~~~~~~ 352 (480)
+++|++||++||+||||+||||+| ++++++++++.||++||||++++| +|+||+++++++++.+. ...+.+
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~ 326 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence 999999999999999999999999 788888899999999999999988 79999999999999884 346789
Q ss_pred cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC---CHHHH
Q 011669 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAET 429 (480)
Q Consensus 353 t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~ 429 (480)
||++||+++++++++|+.++++++.+++++++++++++|.+...+++.+..+++.|+|+++++..+..+..+ .....
T Consensus 327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (460)
T 3gju_A 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG 406 (460)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence 999999999999999999988899999999999999999888888888999999999999999765433222 22245
Q ss_pred HHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 430 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
..+.+.|+++||++.+++ .++++||+||+++|++++++++++|++++++
T Consensus 407 ~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 407 PQVATALAASGVIGRAMP-QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp HHHHHHHHHTTEECEECS-SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 678889999999999876 4589999999999999999999999998864
No 11
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1e-64 Score=525.27 Aligned_cols=404 Identities=23% Similarity=0.316 Sum_probs=345.3
Q ss_pred CCCHHHHHHHHhhhcCCccccc---cCCCeEEEeeeccEEEeC-CCC--EEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669 57 GPSADEILAKRKTFLSPSLFHL---YSKPLNVVDGKMQYLFDE-NGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~l~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~ 130 (480)
+.+.+++++++++++++..... ...|+++++|+|+|+||. ||| +||||++|++++++||+||+|++|+.+|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV 106 (457)
T ss_dssp CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence 3556788999999988765432 345899999999999999 999 9999999999999999999999999999999
Q ss_pred ccccc-cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccc
Q 011669 131 IQHST-VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMG 203 (480)
Q Consensus 131 ~~~~~-~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~ 203 (480)
+.|.+ ..++++...+|+++|++.++.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||++.++++
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence 87765 4577899999999999999877889999999999999999999987 7888999999999999999999
Q ss_pred ccc-CCCccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHH
Q 011669 204 ATA-QSNWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA 279 (480)
Q Consensus 204 ~~~-~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~ 279 (480)
+++ .+.++..... .++..++.|.. .+ ....+++|++++++. ++++++||+|| +||++|.++++++|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~---~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~ 259 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPR---DY---DPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD 259 (457)
T ss_dssp TSCCC----------CCCCEEECCCCS---SC---CHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCc---cc---CHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence 864 3333322221 45556655432 11 122367888888743 34799999999 99999999999999999
Q ss_pred HHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc---CC--Ccccc
Q 011669 280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RR--NYFNT 353 (480)
Q Consensus 280 l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~---~~--~~~~t 353 (480)
|+++|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+||+++++++++.+. .. .+++|
T Consensus 260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t 338 (457)
T 3tfu_A 260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT 338 (457)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence 9999999999999999999999999 788889999999999999999998 69999999999999884 33 57899
Q ss_pred CCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHH
Q 011669 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433 (480)
Q Consensus 354 ~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~ 433 (480)
|++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++.... ....+.
T Consensus 339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~ 409 (457)
T 3tfu_A 339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT 409 (457)
T ss_dssp TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence 999999999999999999888999999999999999999885 67788899999999999985421 146788
Q ss_pred HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+.|+++||++.+. ++++||+||+++|++|+++++++|+++++++
T Consensus 410 ~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 410 PAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp HHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999875 4799999999999999999999999998753
No 12
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1.4e-64 Score=525.03 Aligned_cols=413 Identities=25% Similarity=0.407 Sum_probs=338.8
Q ss_pred HHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cc
Q 011669 62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--ST 135 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~ 135 (480)
++.++.++++++..... ...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++++.+ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 88 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF 88 (459)
T ss_dssp -------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc
Confidence 45556666665543221 1358999999999999999999999999999999999999999999999998752 23
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669 136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
..++++...+++++|++.++.+.++|+|+|||+|||+.|+++++.+ +++++||+++++|||++.+++++++.+.
T Consensus 89 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 168 (459)
T 4a6r_A 89 FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKY 168 (459)
T ss_dssp SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTT
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChh
Confidence 3577899999999999999888899999999999999999999986 4789999999999999999999988776
Q ss_pred cccccc--CCCeeEecCCCCcC-CCCCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669 210 WKFNVV--QTGVHHALNPDPYR-GVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (480)
Q Consensus 210 ~~~~~~--~~g~~~~~~p~~~~-~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~ 282 (480)
++..+. ..++..++.|..|+ +.+ .|.+ .++++|+++++...++++++|++||+++++|.++++++||++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 247 (459)
T 4a6r_A 169 MHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER 247 (459)
T ss_dssp TC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred hccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 654332 25777888776555 222 2322 235778888875434589999999999999999999999999999
Q ss_pred HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc---CCCccccCCCcH
Q 011669 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RRNYFNTFGGNP 358 (480)
Q Consensus 283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~---~~~~~~t~~~~~ 358 (480)
+|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+. ...+++||++||
T Consensus 248 l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~ 326 (459)
T 4a6r_A 248 ICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHP 326 (459)
T ss_dssp HHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCH
T ss_pred HHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCH
Confidence 9999999999999999999999 678888899999999999999987 89999999999999887 455778999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCC---CCHHHHHHHHH
Q 011669 359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT---PAKAETLYIMD 434 (480)
Q Consensus 359 ~~~aaa~a~L~~i~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~~ 434 (480)
+++++++++|+.++++++.++++ ++++++++.|.+...+++.+..+++.|+|+++++..+..++. +.......+.+
T Consensus 327 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
T 4a6r_A 327 VCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRD 406 (459)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHH
Confidence 99999999999988889999999 999999999944445678899999999999999976543322 23344677889
Q ss_pred HHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 435 KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 435 ~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.|+++||++.+++ +++||+||+++|++++++++++|++++++
T Consensus 407 ~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 407 IFFRNNLIMRACG---DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp HHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999875 79999999999999999999999998864
No 13
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=6.3e-64 Score=518.64 Aligned_cols=411 Identities=27% Similarity=0.420 Sum_probs=333.6
Q ss_pred HHHHHHhhhcCCcccc---ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-ccc
Q 011669 62 EILAKRKTFLSPSLFH---LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVL 137 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~---~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~ 137 (480)
++.++.++++++.... +...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++++.|. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 83 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG 83 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence 5677788888754432 224689999999999999999999999999999999999999999999999987664 345
Q ss_pred cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---cC---CceEEEEcCCcccccccccccccCCCcc
Q 011669 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TG---CNDIISLRNAYHGNAAGTMGATAQSNWK 211 (480)
Q Consensus 138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 211 (480)
+.++...+++++|++.++.+.++|+|+|||+|||+.|+++++.+ +| +++||+++++|||++..++++++.+.++
T Consensus 84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 163 (448)
T 3dod_A 84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH 163 (448)
T ss_dssp SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence 67888999999999999877899999999999999999999987 77 8999999999999999999998866555
Q ss_pred ccccC--CCeeEecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCceEEEEEcccC-CCCcceeCCCChHHHHHHHH
Q 011669 212 FNVVQ--TGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSI 284 (480)
Q Consensus 212 ~~~~~--~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l~ 284 (480)
..... .++..++.++.|+++ +.+... .+++|+++++.. ++++++||+||++ +++|.+.++++|+++|+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 164 HVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp ---------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 44322 567788888888776 433222 367788888632 3479999999998 99999999999999999999
Q ss_pred HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccCCC
Q 011669 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGG 356 (480)
Q Consensus 285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~~~ 356 (480)
++||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+.. ..+++||++
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 320 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG 320 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred HHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence 99999999999999999999 677888999999999999999999 599999999999999876 557899999
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH---HHHHHH
Q 011669 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLYIM 433 (480)
Q Consensus 357 ~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~~~ 433 (480)
||+++++++++|+.++++++.++++++++++++.|++ ..+++.+..+++.|+++++++..+..+..+... ....+.
T Consensus 321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (448)
T 3dod_A 321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVS 399 (448)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHH
Confidence 9999999999999988888999999999999999999 667788889999999999999765433222211 136788
Q ss_pred HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.|+++||++.+++ +++||+|++++|+++|++++++|++++++
T Consensus 400 ~~l~~~Gv~~~~~~---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 400 LKMRELGMLTRPLG---DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp HHHHHTTEECCEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEeccC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999998874 79999999999999999999999998864
No 14
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=2.8e-60 Score=488.95 Aligned_cols=418 Identities=33% Similarity=0.527 Sum_probs=351.2
Q ss_pred CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 138 (480)
++.+++++.++++.+....+ .|+++.+|+|+++||.||++||||.++.++.++||+||+|++|+.+++++..+....|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 82 (433)
T 1zod_A 5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM 82 (433)
T ss_dssp TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence 45778888888876643322 5899999999999999999999999999999999999999999999998875544567
Q ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc-CC
Q 011669 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT 217 (480)
Q Consensus 139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~ 217 (480)
+++...+++++|++.++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..++..++...+....+ ..
T Consensus 83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 162 (433)
T 1zod_A 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV 162 (433)
T ss_dssp CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence 78889999999999998778899999999999999999988777888999999999999999888776442221111 25
Q ss_pred CeeEecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 218 GVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 218 g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
++..++.|..++.+|+++ ....+++|++++++..++++++|++||+|+++|.++++++++++|+++|++||++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 242 (433)
T 1zod_A 163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL 242 (433)
T ss_dssp TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence 788888887777666531 1234678888887432357899999999999998889999999999999999999999
Q ss_pred cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHh
Q 011669 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI 371 (480)
Q Consensus 294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i 371 (480)
||||+|||++| .+++++.+++.||++||||++++|+|+||+++++++++.+.... +.+|+++|+++++++.++|+.+
T Consensus 243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~ 321 (433)
T 1zod_A 243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 321 (433)
T ss_dssp ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999998 66677778999999999999999999999999999998886533 4489999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC-
Q 011669 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG- 450 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~- 450 (480)
+++++.+++++++++++++|+++..+++.+..+++.|+|+++++.....+..++......+.+.|+++||++.+++.++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 401 (433)
T 1zod_A 322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM 401 (433)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 8888999999999999999999877778778889999999999864321111212235678888999999999987666
Q ss_pred -CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 451 -NVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 451 -~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++||+|++.+|++++++++++|++++++
T Consensus 402 ~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 402 GGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998865
No 15
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.7e-60 Score=490.81 Aligned_cols=408 Identities=26% Similarity=0.362 Sum_probs=336.0
Q ss_pred CCCHHHHHHHHhhhcCCccc---ccc-----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHH
Q 011669 57 GPSADEILAKRKTFLSPSLF---HLY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~ 128 (480)
.|++.+++++.+++++.+.. ..+ ..|+++++|+|+|+||.|||+||||++|++++++||+||+|++|+.+++
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~ 84 (434)
T 3l44_A 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84 (434)
T ss_dssp CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence 36788999999999876541 111 4699999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC
Q 011669 129 KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS 208 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~ 208 (480)
.+.. ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++.+
T Consensus 85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~ 161 (434)
T 3l44_A 85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG 161 (434)
T ss_dssp HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence 8852 235778999999999999998 5789999999999999999999998899999999999999999998887654
Q ss_pred CccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669 209 NWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (480)
Q Consensus 209 ~~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 287 (480)
......+. .++.....+.....+++ | .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 235 (434)
T 3l44_A 162 PSTLGTPDSAGVPQSIAQEVITVPFN-N----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA 235 (434)
T ss_dssp ---CCCBSSTTCCHHHHTTEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred ccccCCCCcCCCCCcCCCceEecCcc-c----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 33222221 11110000111111222 3 67888888643 247999999999999999999999999999999999
Q ss_pred CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHH
Q 011669 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAG 364 (480)
Q Consensus 288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 364 (480)
|++||+||||+|| |+| .+++++++++.||++||||++++|+|+||+++++++++.+.. ..+++||++|+++++++
T Consensus 236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa 313 (434)
T 3l44_A 236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG 313 (434)
T ss_dssp TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence 9999999999999 998 677788889999999999999999999999999999998875 34678999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHc
Q 011669 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEM 439 (480)
Q Consensus 365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~ 439 (480)
+++|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++...... ..++......+.+.|+++
T Consensus 314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (434)
T 3l44_A 314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE 393 (434)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence 999999888889999999999999999999888888889999999999998543210 013344557788999999
Q ss_pred CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
||++.+++ .+.+|++ +++|++++++++++|++++++
T Consensus 394 Gv~v~~~~--~~~~rl~--~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 394 GVNLAPSK--YEAWFLT--TEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp TEECCSST--TCCEECC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEeecC--CCcEEEe--cccCHHHHHHHHHHHHHHHHH
Confidence 99999875 3567874 899999999999999998864
No 16
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4.8e-60 Score=488.11 Aligned_cols=412 Identities=30% Similarity=0.456 Sum_probs=347.5
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cccC
Q 011669 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYL 139 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~ 139 (480)
.+++++.++++.++... ..|+++++|+|+|+||.||++||||.++.+++++||+||+|.+|+.+++.+..+.. ..++
T Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 84 (439)
T 3dxv_A 7 ALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSAS 84 (439)
T ss_dssp CHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSE
T ss_pred HHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence 46788888877665443 25899999999999999999999999999999999999999999999998876543 4567
Q ss_pred ChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC--ccccccC
Q 011669 140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN--WKFNVVQ 216 (480)
Q Consensus 140 ~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~--~~~~~~~ 216 (480)
++...+++++|++.++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++... ++.....
T Consensus 85 ~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 164 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADG 164 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------C
T ss_pred CHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCC
Confidence 8899999999999998767 799999999999999999998888999999999999999999988877543 3332221
Q ss_pred --CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669 217 --TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (480)
Q Consensus 217 --~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 294 (480)
.++..+++++.+.+. +.+..+++|+++++....+++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 241 (439)
T 3dxv_A 165 LILLPYPDPYRPYRNDP---TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241 (439)
T ss_dssp EEEECCCCSSSCBTTBT---TSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEcCCCcccccc---cHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 233334433322111 111247888888853334589999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669 295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374 (480)
Q Consensus 295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~ 374 (480)
|+|+|||++| .++.++.+++.||++||||++++|+|+||+++++++++.+....+..|+ +||+++++++++|+.++++
T Consensus 242 E~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~ 319 (439)
T 3dxv_A 242 EVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRD 319 (439)
T ss_dssp CTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhc
Confidence 9999999999 6777888899999999999999999999999999999988877778999 9999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEE
Q 011669 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR 454 (480)
Q Consensus 375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 454 (480)
++.++++++++++++.|+++...++.+..+++.|+|+++++..+..+..|.......+.+.|+++||++.+++.+++++|
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 399 (439)
T 3dxv_A 320 DLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLE 399 (439)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEE
Confidence 89999999999999999999888888899999999999999765444445556677889999999999999876678999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 455 ITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 455 i~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|+|++++|++++++++++|++++++
T Consensus 400 i~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 400 FTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 17
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=1.1e-59 Score=484.77 Aligned_cols=391 Identities=27% Similarity=0.467 Sum_probs=320.0
Q ss_pred CCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~ 137 (480)
+++++++++.++++.+. +.+.|+++++|+|+|+||.||++||||.+|++.+++||+||+|++|+.+++++..+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~ 103 (433)
T 1z7d_A 27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA 103 (433)
T ss_dssp CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence 45778888888887654 334589999999999999999999999999999999999999999999999987665445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCC
Q 011669 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
+.++...+++++|++.++ .++|+|+|||+|||+.|+++++.+ +++++||+++++|||++..++.+++.+.
T Consensus 104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~ 181 (433)
T 1z7d_A 104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK 181 (433)
T ss_dssp SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence 677889999999999984 689999999999999999998854 2458999999999999998887776433
Q ss_pred ccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669 210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (480)
Q Consensus 210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 287 (480)
++....+ .++..+++ +| +++|+++++ .+++++|++||+++++|.++++++++++|+++|++|
T Consensus 182 ~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 182 CTSNFGPFAPQFSKVPY---------DD----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ----------CEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred ccccCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 3222111 24444432 13 678888885 247899999999999999889999999999999999
Q ss_pred CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHH
Q 011669 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366 (480)
Q Consensus 288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 366 (480)
|++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+....+..||++||++++++.+
T Consensus 246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324 (433)
T ss_dssp TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence 99999999999999999 677788889999999999999999 9999999999999988876678999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG 446 (480)
Q Consensus 367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 446 (480)
+|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++.... .....+.+.|+++||++.++
T Consensus 325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~ 397 (433)
T 1z7d_A 325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDV 397 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecC
Confidence 99998878899999999999999999986677777888999999999985321 01457888999999999886
Q ss_pred CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 447 ~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+ .+++||+||+.+|++|+++++++|++++++
T Consensus 398 ~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 398 H--DKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp T--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 4 579999999999999999999999998764
No 18
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=6.2e-60 Score=485.95 Aligned_cols=407 Identities=24% Similarity=0.342 Sum_probs=326.9
Q ss_pred CHHHHHHHHhhhcCCcccc---c----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc
Q 011669 59 SADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~ 131 (480)
++.+++++.+++++.+... . ...|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~ 85 (429)
T 4e77_A 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG 85 (429)
T ss_dssp HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence 6788999999998765321 1 23699999999999999999999999999999999999999999999999886
Q ss_pred cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (480)
Q Consensus 132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 211 (480)
.+ ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||.+..++...+.....
T Consensus 86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence 43 34678999999999999998 5789999999999999999999998999999999999999998777555433221
Q ss_pred ccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669 212 FNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (480)
Q Consensus 212 ~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 290 (480)
...+. .++.....+.....+++ | .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l 236 (429)
T 4e77_A 163 LGQPNSPGVPTDFAKHTLTCTYN-D----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL 236 (429)
T ss_dssp ---CCCTTSCGGGGTTEEEECTT-C----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred cCCCCcCCCCCccCCceeecCCC-C----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 11111 12211111122222332 3 67888888753 347999999999999999999999999999999999999
Q ss_pred EEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHHHH
Q 011669 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGHAV 367 (480)
Q Consensus 291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~a~ 367 (480)
||+||||+|| |+| .++.++.+++.||++||||++++|+|+||+++++++++.+... .+++||++||++++++.++
T Consensus 237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence 9999999999 998 6777888999999999999999999999999999999988753 4678999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc------CCCCHHHHHHHHHHHHHcCc
Q 011669 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL------KTPAKAETLYIMDKMKEMGV 441 (480)
Q Consensus 368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv 441 (480)
|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++...... ..++......+.+.|+++||
T Consensus 315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 394 (429)
T 4e77_A 315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV 394 (429)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence 999888889999999999999999999888888889999999999998653210 11233455778899999999
Q ss_pred eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
++.+++. ..+| +++.+|++|+++++++|+++++++
T Consensus 395 ~v~~~~~--~~~~--~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 395 YLAPSAF--EAGF--MSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp ECCSSTT--SCEE--CCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEeecCC--CCEE--EeccCCHHHHHHHHHHHHHHHHhC
Confidence 9998752 3344 468999999999999999998764
No 19
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=1.5e-59 Score=484.43 Aligned_cols=392 Identities=25% Similarity=0.473 Sum_probs=333.4
Q ss_pred CCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669 57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~ 136 (480)
++++++++++..+++.+. +.+.|+++.+|+|+|+||.||++||||.+|++.+++||+||+|++|+.+++++..+.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~ 113 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR 113 (439)
T ss_dssp CCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT
T ss_pred CCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC
Confidence 466788888888887654 33468999999999999999999999999999999999999999999999998766544
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCC
Q 011669 137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQS 208 (480)
Q Consensus 137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~ 208 (480)
.|.++...+++++|++.++ .++|+|++||+||++.|+++++.+ +++++||+++++|||++..++.+++.+
T Consensus 114 ~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~ 191 (439)
T 2oat_A 114 AFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP 191 (439)
T ss_dssp TSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred ccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence 5667788999999999984 688999999999999999998854 245899999999999998888776643
Q ss_pred CccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669 209 NWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286 (480)
Q Consensus 209 ~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~ 286 (480)
.++....+ .++..++++ | +++++++++ .+++++|++||+++++|.+.++++++++|+++|++
T Consensus 192 ~~~~~~~p~~~~v~~~~~~---------d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 255 (439)
T 2oat_A 192 TSYDGFGPFMPGFDIIPYN---------D----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255 (439)
T ss_dssp HHHTTSCSCCTTEEEECSS---------C----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred hcccCCCCCCCCeEEeCCC---------C----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 22221111 344444322 3 678888885 24789999999999999988999999999999999
Q ss_pred hCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (480)
Q Consensus 287 ~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~ 365 (480)
||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+....+..||++||++++++.
T Consensus 256 ~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~ 334 (439)
T 2oat_A 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAI 334 (439)
T ss_dssp TTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHH
T ss_pred cCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHH
Confidence 999999999999999999 677788889999999999999999 999999999999998887777899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK 445 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 445 (480)
++|+.++++++.+++++++++++++|+++ .++.+..+++.|+++++++..+.. .....+.+.|+++||++.+
T Consensus 335 aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~------~~~~~l~~~l~~~Gv~v~~ 406 (439)
T 2oat_A 335 AALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLAKP 406 (439)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEECCB
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc------HHHHHHHHHHHHCCeEEec
Confidence 99999888889999999999999999887 466677789999999998854310 1145788889999999998
Q ss_pred cCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 446 GGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 446 ~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
++ ++++||+||+.+|++|+++++++|+++++++
T Consensus 407 ~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 407 TH--GDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp SS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CC--CCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence 64 5899999999999999999999999998764
No 20
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=3.2e-60 Score=488.17 Aligned_cols=408 Identities=22% Similarity=0.331 Sum_probs=338.1
Q ss_pred CCCHHHHHHHHhhhcCCccc---ccc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669 57 GPSADEILAKRKTFLSPSLF---HLY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK 129 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~ 129 (480)
.|++.+++++.+++++.+.. ..+ ..|+++++|+|+++||.|||+||||++|++++++||+||+|++|+.++++
T Consensus 4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~ 83 (429)
T 3k28_A 4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE 83 (429)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence 35788999999999876532 122 56999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669 130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
++.+ ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||++..++..++...
T Consensus 84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 160 (429)
T 3k28_A 84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV 160 (429)
T ss_dssp HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence 8643 34678999999999999997 57899999999999999999999989999999999999999999988776543
Q ss_pred ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669 210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG 288 (480)
Q Consensus 210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g 288 (480)
.....+. .++.....+.....+++ | .++++++++.. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 161 ATLGLPDSPGVPEGVAKNTITVAYN-D----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp -----CCCTTCCHHHHTTEEEEETT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred cccCCCCcCCCCCcccCceeecCCC-C----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 3222221 11110000011111222 3 67888888643 2479999999999999999999999999999999999
Q ss_pred CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHH
Q 011669 289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH 365 (480)
Q Consensus 289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~ 365 (480)
++||+||||+|| ++| .+++++.+++.||++||||++++|+|+||+++++++++.+... .+++||++|++++++++
T Consensus 235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~ 312 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312 (429)
T ss_dssp CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence 999999999999 998 6777788899999999999999999999999999999888653 36789999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G 440 (480)
++|+.++ +++.++++++++++++.|+++...++.+..+++.|+++++++..+.. ...++......+.+.|+++|
T Consensus 313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (429)
T 3k28_A 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG 391 (429)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence 9999876 78899999999999999999988888888999999999999864321 11234455677889999999
Q ss_pred ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
|++.+++ .+.+|+ ++++|++++++++++|+++++++
T Consensus 392 v~v~~~~--~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 392 VFLPPSQ--FEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp EECCSST--TSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eEEecCC--CCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999875 456777 48999999999999999998763
No 21
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=8.8e-60 Score=484.88 Aligned_cols=394 Identities=27% Similarity=0.419 Sum_probs=317.2
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCC
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN 157 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~ 157 (480)
...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++..+.+. .++++...+++++|++.++.+
T Consensus 9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999999999999999999999998765443 577889999999999999877
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--C--CeeEecCCCC
Q 011669 158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--T--GVHHALNPDP 227 (480)
Q Consensus 158 ~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~--g~~~~~~p~~ 227 (480)
.++|+|+|||+|||+.|+++++.+ +++++||+++++|||++..++.+++.+.++..... . ++..++.++.
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP 168 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence 889999999999999999999887 78899999999999999999888775544332211 2 5555665554
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCC-CCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC
Q 011669 228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306 (480)
Q Consensus 228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~ 306 (480)
+++ ....+++|+++++...++++++|++||++| ++|.+.++++++++|+++|++||++||+||||+|||++| .
T Consensus 169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~ 242 (430)
T 3i4j_A 169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S 242 (430)
T ss_dssp TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence 432 333467888888754335799999999999 999999999999999999999999999999999999999 6
Q ss_pred ccccccc-CCCcceeeeccccccC-ccccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHH
Q 011669 307 FWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380 (480)
Q Consensus 307 ~~~~~~~-~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~ 380 (480)
+++++.+ ++.||++||||++++| +|+||+++++++++.+... .+..||++|++++++++++|+.++++++.+++
T Consensus 243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 7888888 9999999999999999 9999999999999988753 57789999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC--HHHHHHHHHHHHHcCceeecc-----CcCCCEE
Q 011669 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--KAETLYIMDKMKEMGVLVGKG-----GFYGNVF 453 (480)
Q Consensus 381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~i 453 (480)
+++++++++.|+++..+++.+..+++.|+|+++++.+ ..+..+. ......+.+.|+++||++.++ +..++++
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~i 401 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL 401 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-----------CEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEE
Confidence 9999999999999988888889999999999999863 2111111 112467888999999999987 2236789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
||+|++++|++++++++++|++++++
T Consensus 402 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 402 LLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 22
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=3.7e-59 Score=479.79 Aligned_cols=409 Identities=25% Similarity=0.354 Sum_probs=340.5
Q ss_pred CCCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669 57 GPSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK 129 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~ 129 (480)
.|++.+++++.+++++++... .+ +.|+++++|+|+++||.||++||||.+|++++++||+||+|++|+.++++
T Consensus 3 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 82 (427)
T 3fq8_A 3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME 82 (427)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHH
Confidence 367889999999988765432 12 56999999999999999999999999999999999999999999999998
Q ss_pred hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669 130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
++.+. .++++...+++++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++.+.
T Consensus 83 ~~~~~--~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 159 (427)
T 3fq8_A 83 KGTSF--GAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV 159 (427)
T ss_dssp TCSCC--SSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHH
T ss_pred hCCCc--CCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcc
Confidence 86542 3478899999999999998 57899999999999999999999999999999999999999998887766443
Q ss_pred ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669 210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG 288 (480)
Q Consensus 210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g 288 (480)
.....+. .++......+....+++ | .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 160 ATLGLPSSPGVPKKTTANTLTTPYN-D----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp HHHTCCSCSSSCHHHHTTEEEEETT-C----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred cccCCCCCCCCCCcccCceeecCCC-C----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 2222111 22211000111111222 3 67888888753 3579999999999999999999999999999999999
Q ss_pred CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHH
Q 011669 289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH 365 (480)
Q Consensus 289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~ 365 (480)
++||+||||+|| |+| ..+..+.+++.||++||||++++|+|+||+++++++++.+... .+.+||++||++++++.
T Consensus 234 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~ 311 (427)
T 3fq8_A 234 ALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311 (427)
T ss_dssp CEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence 999999999999 898 6677788899999999999999999999999999999988753 36789999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcC
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~G 440 (480)
++|+.++++++.++++++++++++.|+++...++.+..+++.|+++++++...... ..++......+.+.|+++|
T Consensus 312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 391 (427)
T 3fq8_A 312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391 (427)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCC
Confidence 99999888889999999999999999999888887788999999999998653211 1234445667889999999
Q ss_pred ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
|++.+++. .|+++++.+|++++++++++|+++++++
T Consensus 392 i~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 392 IYLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cEEecCCC----CCEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 99998752 2667789999999999999999998764
No 23
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=2.5e-64 Score=519.38 Aligned_cols=392 Identities=22% Similarity=0.310 Sum_probs=330.3
Q ss_pred CCCHHHHHHHHhhhcCCcccc----ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669 57 GPSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~ 132 (480)
.|++++++++.++++..+... +.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|+.+..
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~ 133 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL 133 (465)
Confidence 456788999999988754332 3346999999999999999999999999999999999999999999999998852
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
...|+++...+|+++|++.+| +.++|+|+|||+|||+.|++++|.++++++||+++++|||++.+++ ++ + .
T Consensus 134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg-~-~-- 204 (465)
T 2yky_A 134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG-H-A-- 204 (465)
Confidence 245678899999999999998 5788999999999999999999999999999999999999999888 22 1 0
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
..|+.. .....+| +| +++|++++++. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus 205 ---~~g~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI 271 (465)
T 2yky_A 205 ---PTNAPY----HVVLGVY-ND----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI 271 (465)
Confidence 112211 1111223 23 56788888643 25899999999999999999999999999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---C--CccccCCCcHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAV 367 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~--~~~~t~~~~~~~~aaa~a~ 367 (480)
+||||+ | |+| .+++++++++.||++||||++++|+|+||+++++++++.+.. . .+++||++||+++++++++
T Consensus 272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa 348 (465)
T 2yky_A 272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348 (465)
Confidence 999999 7 888 677888999999999999999999999999999999998876 2 4679999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCC-----CcCCCCHHHHHHHHHHHHHcCce
Q 011669 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-----QLKTPAKAETLYIMDKMKEMGVL 442 (480)
Q Consensus 368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gv~ 442 (480)
|+.++++++.+++++++++++++|+++.++++.+..+++.|+|+++++..+. ..+.++......+.+.|+++||+
T Consensus 349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~ 428 (465)
T 2yky_A 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY 428 (465)
Confidence 9999888999999999999999999998888888889999999999986411 11112223356788899999999
Q ss_pred eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.+++. +. ||+++|++||++++++|++++++
T Consensus 429 v~p~~~-~~-----~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 429 LAPRGM-YA-----LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 998752 22 77899999999999999998865
No 24
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.6e-59 Score=488.15 Aligned_cols=405 Identities=24% Similarity=0.360 Sum_probs=322.0
Q ss_pred CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc--c
Q 011669 55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--Q 132 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~--~ 132 (480)
.++|++.+++++..+++.+.. .+.|+.+++|+|+|+||.|||+||||++|++++++||+||+|++|+.+|+... .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~ 98 (472)
T 1ohv_A 22 VPGPRSRELMKQLNIIQNAEA---VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFI 98 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCTT---CCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHH
T ss_pred CCCccHHHHHHHHHhhhcccc---ccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccc
Confidence 456778889998888875432 23467889999999999999999999999999999999999999999987543 2
Q ss_pred cccccc---CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-----------c-------------C--
Q 011669 133 HSTVLY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------T-------------G-- 183 (480)
Q Consensus 133 ~~~~~~---~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~-----------~-------------~-- 183 (480)
+....+ ..+...+++++|++.++.+.++|+|+|||+|||+.|||+++.+ | +
T Consensus 99 ~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~ 178 (472)
T 1ohv_A 99 NRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP 178 (472)
T ss_dssp CCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCC
Confidence 322111 2345566666677777767889999999999999999999754 1 3
Q ss_pred CceEEEEcCCcccccccccccccCCCc-cccccCCCeeEecCCCCcCCCCCCCh-------HHHHHHHHHHHHccCC--C
Q 011669 184 CNDIISLRNAYHGNAAGTMGATAQSNW-KFNVVQTGVHHALNPDPYRGVFGADG-------EMYAKDVQDLIDFGTS--G 253 (480)
Q Consensus 184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~d~-------~~~~~~le~~i~~~~~--~ 253 (480)
+++||+++++|||++.+++++++...+ ....+..++..+++|. ++.++..+. ...+++|+++++.... .
T Consensus 179 r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 257 (472)
T 1ohv_A 179 DYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 257 (472)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCC
Confidence 589999999999999999998875433 1122223444445542 333321110 1246788888864211 2
Q ss_pred ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC--cceeeeccc-cccCc
Q 011669 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKG-IGNGI 330 (480)
Q Consensus 254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~--pDivt~sK~-~g~G~ 330 (480)
++++|++||+++++|.++++++|+++|+++|++||++||+||||+|||++| .+|+++.+++. ||++||||+ ++||+
T Consensus 258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~Di~t~sK~~l~GG~ 336 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGF 336 (472)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCSEEEECGGGSSEEE
T ss_pred CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCCEEEEccccccCCc
Confidence 799999999999999999999999999999999999999999999999999 67788888886 999999999 78765
Q ss_pred cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccce
Q 011669 331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGF 409 (480)
Q Consensus 331 pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~ 409 (480)
+ + ++++. .+....+++|+++||+++++++++|+.+.++++.+++++++++++++|+++..+++ .+..+++.|+
T Consensus 337 ~----~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~ 410 (472)
T 1ohv_A 337 F----H-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT 410 (472)
T ss_dssp E----E-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred c----C-chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce
Confidence 4 3 55552 23445578999999999999999999988888999999999999999999877777 4778999999
Q ss_pred eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
|+++++.. ......+.+.|+++||++.+++ .++|||+|++++|++||++++++|+++++++
T Consensus 411 ~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~g--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 411 FCSFDTPD--------ESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp EEEEECSS--------HHHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCC--------hhHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99987632 2245678899999999998865 5799999999999999999999999998764
No 25
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=4.4e-58 Score=466.77 Aligned_cols=373 Identities=30% Similarity=0.514 Sum_probs=329.6
Q ss_pred ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC
Q 011669 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN 157 (480)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~ 157 (480)
+.+.|+++.+|+|+++||.||++||||.++++.+++||+||+|.+|+.+++++..|....++++...+++++|++.++
T Consensus 15 ~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 92 (395)
T 3nx3_A 15 YKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-- 92 (395)
T ss_dssp GGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--
T ss_pred cCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--
Confidence 446689999999999999999999999999999999999999999999999988776666788999999999999985
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHhh-----cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCC
Q 011669 158 LKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG 230 (480)
Q Consensus 158 ~~~v~f~~sGseA~~~Alk~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~ 230 (480)
.++++|++||+|||+.|+++++.+ +++++||+++++|||++..++.+++.+.++..... .++..++.+
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN----- 167 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence 578999999999999999999877 67899999999999999999988875544433322 234444322
Q ss_pred CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310 (480)
Q Consensus 231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~ 310 (480)
| +++|+++++ +++++|++||+++++|.+.++++++++|+++|++||++||+||||+|||++| .++++
T Consensus 168 ----d----~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~ 234 (395)
T 3nx3_A 168 ----D----ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAY 234 (395)
T ss_dssp ----C----HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGG
T ss_pred ----C----HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhH
Confidence 2 577777764 4799999999999999999999999999999999999999999999999999 67778
Q ss_pred cccCCCcceeeeccccccCccccccccCHHH-HHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI-AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE 389 (480)
Q Consensus 311 ~~~~~~pDivt~sK~~g~G~pig~v~~~~~~-~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~ 389 (480)
+.+++.||++||||++++|+|+||+++++++ ++.+....+..|+++|+++++++.++|+.++++++.++++++++++++
T Consensus 235 ~~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~ 314 (395)
T 3nx3_A 235 EHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQ 314 (395)
T ss_dssp GGGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999 888887778899999999999999999988878899999999999999
Q ss_pred HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669 390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL 469 (480)
Q Consensus 390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~ 469 (480)
.|.++..+++.+..+++.|+++++++.... ....+.+.|+++||++.+++ .+++||+|++.+|+++++++
T Consensus 315 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~ 384 (395)
T 3nx3_A 315 SLDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEM 384 (395)
T ss_dssp HHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHH
Confidence 999998888888889999999999985421 14678888999999999876 68999999999999999999
Q ss_pred HHHHHHHHhhC
Q 011669 470 VDVMDYSLSKM 480 (480)
Q Consensus 470 l~~l~~~l~~~ 480 (480)
+++|+++++++
T Consensus 385 l~~l~~~l~~~ 395 (395)
T 3nx3_A 385 SEKLRKALKSF 395 (395)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 26
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=1.5e-58 Score=478.45 Aligned_cols=400 Identities=25% Similarity=0.344 Sum_probs=327.2
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEe-CCCCEEEeccCCcccccCCCCCHHHH-H-HHHH---HHHhcccc
Q 011669 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVV-D-SIVN---QIKRIQHS 134 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-A~~~---~~~~~~~~ 134 (480)
+++++...+++... .++.++.+++|+|+|+|| .||++||||++|++++++||+||+|+ + |+.+ ++.++.|.
T Consensus 18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~ 94 (449)
T 2cjg_A 18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94 (449)
T ss_dssp GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45776666665332 233334457999999999 99999999999999999999999999 9 9999 88887665
Q ss_pred ccccCChHHHHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHHHhhcC------------CceEEEEcCCcccccccc
Q 011669 135 TVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGT 201 (480)
Q Consensus 135 ~~~~~~~~~~~l~e~L~~~~~-~~~~~v~f~~sGseA~~~Alk~ar~~~~------------~~~ii~~~~~yhG~~~~~ 201 (480)
+..|.++...+++++|++.++ .+.++|+|+|||+|||+.|+++++.+++ +++||+++++|||++.++
T Consensus 95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT 174 (449)
T ss_dssp TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence 556778889999999999986 4678999999999999999999987654 789999999999999999
Q ss_pred cccccC-CCccccccC--CCeeEecCCC--CcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669 202 MGATAQ-SNWKFNVVQ--TGVHHALNPD--PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (480)
Q Consensus 202 ~~~~~~-~~~~~~~~~--~g~~~~~~p~--~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 276 (480)
+.+++. +.++....+ .++..+++++ ...+.|..+....+++|+++++.. .+++++|++||+||++|.++++++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~ 253 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF 253 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence 988875 222222211 2444444433 111111001123456788888643 2479999999999999988899999
Q ss_pred HHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhh-----cCCCcc
Q 011669 277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL-----TRRNYF 351 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l-----~~~~~~ 351 (480)
+++|+++|++||++||+||||+||||+| .+|+++.+++.||++||||++ |+||+++++++++.+ ....+.
T Consensus 254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~ 328 (449)
T 2cjg_A 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN 328 (449)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence 9999999999999999999999999999 677778889999999999999 899999999998862 334567
Q ss_pred ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHH
Q 011669 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETL 430 (480)
Q Consensus 352 ~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~ 430 (480)
+||++|+++++++.++|+.++++++.+++++++++++++|+++..+++. +..+++.|+|+++++.. .....
T Consensus 329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~ 400 (449)
T 2cjg_A 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD 400 (449)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence 8999999999999999999888889999999999999999998777876 77889999999988732 22356
Q ss_pred HHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 431 YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 431 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+.+.|+++||++.+++ .+++||+|++++|+++|++++++|++++++
T Consensus 401 ~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 401 ELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999875 589999999999999999999999999865
No 27
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.6e-57 Score=466.76 Aligned_cols=388 Identities=29% Similarity=0.485 Sum_probs=316.2
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 140 (480)
.+++++..+++.+. +.+.|+++.+|+|+|+||.||++||||.+|++++++||+||+|.+|+.+++++..+.+..|.+
T Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~ 98 (420)
T 2pb2_A 22 AITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTN 98 (420)
T ss_dssp --------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCC
T ss_pred HHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCC
Confidence 45666666776554 335689999999999999999999999999999999999999999999999887665555778
Q ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccc
Q 011669 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (480)
Q Consensus 141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~ 214 (480)
+...+++++|++.++ .++|+|++||+||++.|+++++.+ +++++||+++++|||.+..++..++...++..+
T Consensus 99 ~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 99 EPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 899999999999985 578999999999999999998875 566799999999999998887776543222111
Q ss_pred cC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
.+ .++..++.+ | +++|+++++ +++++|++||++|++|.+.++++++++|+++|++||++||
T Consensus 177 ~p~~~~~~~~~~~---------d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI 239 (420)
T 2pb2_A 177 GPKPADIIHVPFN---------D----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLV 239 (420)
T ss_dssp SSCCSCEEEECTT---------C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCeEEecCC---------C----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEE
Confidence 11 234444321 3 678888875 3799999999999999888899999999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~ 372 (480)
+||+|+|||++| .+++++.+++.||++||||++++|+|+||+++++++++.+....+..||++|+++++++.++|+.++
T Consensus 240 ~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~ 318 (420)
T 2pb2_A 240 FDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN 318 (420)
T ss_dssp EECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS
T ss_pred EEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 999999999999 6666777889999999999999999999999999998888766677899999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV 452 (480)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 452 (480)
++++.++++++++++++.|+++...++.+..+++.|+++++++..... .....+.+.|+++||++.+++ .++
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~~~--~~~ 390 (420)
T 2pb2_A 319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLNAG--ADV 390 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEESS--TTE
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEeCC--CCE
Confidence 788999999999999999998866677777889999999998853210 014568888999999999875 579
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 453 FRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 453 iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+||+||+.+|++|+++++++|++++++
T Consensus 391 iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 391 MRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 28
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.7e-57 Score=468.45 Aligned_cols=409 Identities=23% Similarity=0.331 Sum_probs=329.2
Q ss_pred CCCCHHHHHHHHhhhcCCccc----cc-cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669 56 DGPSADEILAKRKTFLSPSLF----HL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (480)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~----~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~ 130 (480)
++|++++++++.++++.++.. .+ .+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~ 87 (434)
T 2epj_A 8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR 87 (434)
T ss_dssp -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence 457889999999998865432 12 3459999999999999999999999999999999999999999999999988
Q ss_pred ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 210 (480)
..+ ..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus 88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 164 (434)
T 2epj_A 88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA 164 (434)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence 532 34678889999999999987 578999999999999999999998889999999999999999988776653221
Q ss_pred cccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669 211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289 (480)
Q Consensus 211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi 289 (480)
.+..+. .|+.....++.+..++ +| +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus 165 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 238 (434)
T 2epj_A 165 HYGVPTSAGVPEAVARLTLVTPY-ND----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA 238 (434)
T ss_dssp --CEESSTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCCcccCceEecCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence 111111 1221000000111112 23 67788888642 24799999999999999988899999999999999999
Q ss_pred EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC-C--CccccCCCcHHHHHHHHH
Q 011669 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA 366 (480)
Q Consensus 290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~-~--~~~~t~~~~~~~~aaa~a 366 (480)
+||+||+|+|| ++| ..+.++.+++.||++||||++++|+|+||+++++++++.+.. . .+.+||++||++++++.+
T Consensus 239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 99999999999 788 566677889999999999999999999999999999988865 2 356899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcCc
Q 011669 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMGV 441 (480)
Q Consensus 367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv 441 (480)
+|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++..... .+.++......+.+.|+++||
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 396 (434)
T 2epj_A 317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV 396 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence 999988788999999999999999999876677767789999999999854210 011223446678899999999
Q ss_pred eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
++.+++. . |+.+++.+|++++++++++|++++++
T Consensus 397 ~v~~~~~--~--~~~~~~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 397 FIAPSNL--E--AVFTGLPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ECCSSTT--S--CEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred EEeccCC--C--cEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9998752 3 34566899999999999999998864
No 29
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-56 Score=457.03 Aligned_cols=404 Identities=24% Similarity=0.366 Sum_probs=326.3
Q ss_pred CCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669 58 PSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~ 130 (480)
+++++++++.++++.++... .+ ..|+++++++|+++||.||++||||.+|++++++||+||+|++|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (424)
T 2e7u_A 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83 (424)
T ss_dssp HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 46788999999998654321 12 248999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 210 (480)
..+ ..|.++...+++++|+++++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus 84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 160 (424)
T 2e7u_A 84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL 160 (424)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence 533 24678889999999999997 678999999999999999999998889999999999999999988776554322
Q ss_pred cccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669 211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289 (480)
Q Consensus 211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi 289 (480)
.+..+. .|+.....+..+..++ +| +++|++++++. ++++++|++||+++++|.+.++++|+++|+++ ++||+
T Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~ 233 (424)
T 2e7u_A 161 TLGVPSSAGVPEEYAKLTLVLEY-ND----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV 233 (424)
T ss_dssp CBCEESSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred ccCCCCCCCCCCccCCceEeCCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence 211111 1221000001111122 23 67788888642 24789999999999999888899999999999 99999
Q ss_pred EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC-C--CccccCCCcHHHHHHHHH
Q 011669 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA 366 (480)
Q Consensus 290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~-~--~~~~t~~~~~~~~aaa~a 366 (480)
+||+||+|+|| ++| ..++++.+++.||++||||++++|+|+||+++++++++.+.. . .+.+||++||++++++.+
T Consensus 234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a 311 (424)
T 2e7u_A 234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA 311 (424)
T ss_dssp EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence 99999999999 888 566677889999999999999999999999999999998875 2 356899999999999999
Q ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669 367 VLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 367 ~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G 440 (480)
+|+.+++ +++.+++++++++++++|+++.++++.+..+++.|+|+++++..... .+.++......+.+.|+++|
T Consensus 312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (424)
T 2e7u_A 312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG 391 (424)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence 9999887 88999999999999999999877777767789999999999853210 01122334667888999999
Q ss_pred ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
|++.+++. . |+.+++++|++++++++++|++++
T Consensus 392 v~v~~~~~--~--~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 392 IYWPPSNF--E--AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EECCSSSS--S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eEEeccCC--C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence 99998752 2 344668999999999999998863
No 30
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=9.9e-56 Score=457.27 Aligned_cols=393 Identities=25% Similarity=0.396 Sum_probs=326.7
Q ss_pred CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669 80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL 158 (480)
Q Consensus 80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~ 158 (480)
+.|+++.+|+|+++||.||++|||+.++.+++++||+||+|++|+.+++.+..+... .+.++...+++++|++.++.+.
T Consensus 31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 110 (449)
T 3a8u_X 31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL 110 (449)
T ss_dssp HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999987642122 5678889999999999998778
Q ss_pred CEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCC
Q 011669 159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG 230 (480)
Q Consensus 159 ~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~ 230 (480)
++|+|++||+||++.|+++++.++ ++++||+++++|||.+..++..++.+.++..+. ..++..++.|..++.
T Consensus 111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (449)
T 3a8u_X 111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN 190 (449)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence 899999999999999999988765 678999999999999988887766433222221 246777777765554
Q ss_pred CCC-CC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC
Q 011669 231 VFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305 (480)
Q Consensus 231 ~~~-~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~ 305 (480)
+|. .| ...++++|++++++..++++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|||++|
T Consensus 191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g- 269 (449)
T 3a8u_X 191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG- 269 (449)
T ss_dssp TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence 431 12 233467888888743224789999999999999888999999999999999999999999999999998
Q ss_pred CcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC---------CccccCCCcHHHHHHHHHHHHHhhhhH
Q 011669 306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGNPVCTAAGHAVLKVIQKDK 375 (480)
Q Consensus 306 ~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~---------~~~~t~~~~~~~~aaa~a~L~~i~~~~ 375 (480)
.++.++.+++.||++||||++++| +|+||+++++++++.+... .+..|+++|+++++++.++|+.+++++
T Consensus 270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 349 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN 349 (449)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence 666778889999999999999988 9999999999999888653 356799999999999999999988788
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI 455 (480)
Q Consensus 376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 455 (480)
+.+++++++++++++|+++ .+++.+..+++.|+++++++....... ......+.+.|+++||++.+++ +++||
T Consensus 350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g---~~iRi 422 (449)
T 3a8u_X 350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGG---DTLQF 422 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEET---TEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCC---CEEEE
Confidence 9999999999999999884 346777778899999999986432110 0012358888889999999874 78999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+||+.+|++++++++++|+++++++
T Consensus 423 s~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 423 GPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 31
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.7e-55 Score=445.94 Aligned_cols=398 Identities=29% Similarity=0.483 Sum_probs=324.0
Q ss_pred HHHHHHHHhhh-cCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCC-CHHHHHHHHHHHHhcccc-cc
Q 011669 60 ADEILAKRKTF-LSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHS-TV 136 (480)
Q Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~-~~ 136 (480)
+.+++++..++ +.+.... +..|+++.+++|+++||.+|++|||+.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~ 81 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN 81 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence 45677777777 6665332 23689999999999999999999999999999999999 999999999999876542 24
Q ss_pred ccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cccccc
Q 011669 137 LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV 214 (480)
Q Consensus 137 ~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~ 214 (480)
.|+++...+++++|++.++.+ .++|+|++||+||++.|+++++.++ +++||+++++|||.+..++.+++.. .++...
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 577888999999999999876 5799999999999999999988766 7899999999999999988877643 333222
Q ss_pred c--CCCeeEecCCCCcCCCCCCC----h--H--HHHHHHH-HHHHccC-CCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669 215 V--QTGVHHALNPDPYRGVFGAD----G--E--MYAKDVQ-DLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (480)
Q Consensus 215 ~--~~g~~~~~~p~~~~~~~~~d----~--~--~~~~~le-~~i~~~~-~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~ 282 (480)
. ..++..++.++.++.+|+.+ . + ..+++|+ ++++... ++++++|++||+|+++|.++++++++++|++
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~ 240 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence 1 13677777777666666531 0 1 2367788 7776321 1478999999999999988889999999999
Q ss_pred HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHH
Q 011669 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT 361 (480)
Q Consensus 283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~ 361 (480)
+|++||++||+||+|+|||++| ..++++..++.||++||||++++| +|+||++++++++ .+ ...+.+|+++|++++
T Consensus 241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~ 317 (419)
T 2eo5_A 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC 317 (419)
T ss_dssp HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence 9999999999999999999998 566677788999999999999999 9999999999987 66 445678999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV 441 (480)
Q Consensus 362 aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 441 (480)
+++.++|+.+++ +.++++++++++++.|+++ +..+++.|+|+++++.. ...... +.+.|+++||
T Consensus 318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv 381 (419)
T 2eo5_A 318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL 381 (419)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence 999999997654 7888888899888888664 45678899999998731 112245 8888899999
Q ss_pred eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
++.+++ .+++||+|++.+|++++++++++|+++++++
T Consensus 382 ~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 382 LLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999876 5799999999999999999999999988753
No 32
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=1.6e-54 Score=448.87 Aligned_cols=402 Identities=22% Similarity=0.299 Sum_probs=307.3
Q ss_pred CCHHHHHHHHhhhcCCcccc----ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669 58 PSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~ 133 (480)
|++++++++.++++.++... +.+.|+++++|+|+++||.||++||||.+|++++++||+||+|++|+.+++++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~ 91 (453)
T 2cy8_A 12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ 91 (453)
T ss_dssp HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence 56788999999998765322 23459999999999999999999999999999999999999999999999987533
Q ss_pred cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN 213 (480)
Q Consensus 134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 213 (480)
..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++. .+..+
T Consensus 92 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~ 167 (453)
T 2cy8_A 92 --YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDGQ 167 (453)
T ss_dssp --SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC---------------------
T ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCCC
Confidence 24678899999999999987 678999999999999999999988888899999999999999887765532 11000
Q ss_pred ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
. ..|+.....+..+..+| +| +++|++++++. ++++++|++||+++++|.+.++++|+++|+++|++||++||+
T Consensus 168 ~-~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 168 P-APGVLPETTANTLLIRP-DD----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp ---------CGGGEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCccccCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 01221100001111122 23 67788888642 247899999999999998888999999999999999999999
Q ss_pred cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---C--CccccCCCcHHHHHHHHHHH
Q 011669 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAVL 368 (480)
Q Consensus 294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~--~~~~t~~~~~~~~aaa~a~L 368 (480)
||+|+|| ++| ..+.++.+++.||++||||++++|+|+||+++++++++.+.. . .+.+||++||++++++.++|
T Consensus 241 DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 241 DEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp ECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred ecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence 9999999 888 566677789999999999999999999999999999988876 1 35679999999999999999
Q ss_pred HH-hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEec-----C------CCcCCCCHHHHHHHHHHH
Q 011669 369 KV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT-----D------RQLKTPAKAETLYIMDKM 436 (480)
Q Consensus 369 ~~-i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~-----~------~~~~~~~~~~~~~~~~~l 436 (480)
+. + .+++.+++++++++++++|+++..+++.+..+++.|+|+++++.. + .....++......+.+.|
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 397 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMAL 397 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHH
Confidence 98 7 778899999999999999999877777777789999999999853 1 001112233456788899
Q ss_pred HHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 437 KEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 437 ~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++||++.++ +.+| +++.+|++++++++++|++++++
T Consensus 398 ~~~Gv~v~~~----~~~~--l~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 398 ILEGVDIGGR----GSVF--LSAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp HHTTEECBTT----TEEE--CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCeEEeCC----CCEE--eeccCCHHHHHHHHHHHHHHHHH
Confidence 9999999653 2355 56899999999999999998764
No 33
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=3.4e-53 Score=435.64 Aligned_cols=397 Identities=26% Similarity=0.376 Sum_probs=320.6
Q ss_pred HHHhhhcCCccccc-cCCCeE-EEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cccCCh
Q 011669 65 AKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNH 141 (480)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~ 141 (480)
...++++.+....+ .+.|++ +.+++|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+.. ..|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (429)
T 1s0a_A 7 AFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA 86 (429)
T ss_dssp HHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred hHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence 34445554433222 223665 899999999999999999999999999999999999999999998764432 356778
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC-----CceEEEEcCCcccccccccccccCCC-cccccc
Q 011669 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSN-WKFNVV 215 (480)
Q Consensus 142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~~ 215 (480)
...+++++|++.++.+.++|+|++||+||++.|+++++.+++ +++||+++++|||+...++.+++... ++....
T Consensus 87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 889999999999987788999999999999999998876544 78999999999999988877765332 221111
Q ss_pred --CCCeeEecCCCCc-CCCCC-CChHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669 216 --QTGVHHALNPDPY-RGVFG-ADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGL 290 (480)
Q Consensus 216 --~~g~~~~~~p~~~-~~~~~-~d~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gil 290 (480)
..++..++.+..+ ...|+ .| +++++++++.. ++++++|++||+ +|++|.++++++++++|+++|++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~ 241 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERD----MVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGG----GHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred CCCCCceEeCCCcccccccchHHH----HHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1355566655321 11221 22 57788887642 247899999999 999999889999999999999999999
Q ss_pred EEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCcHHHHHHH
Q 011669 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAG 364 (480)
Q Consensus 291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~~~~~aaa 364 (480)
||+||+|+|||++| ..++++..++.||++||||++++| +|+||+++++++++.+... .+.+|+++|+++++++
T Consensus 242 li~De~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~ 320 (429)
T 1s0a_A 242 LIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA 320 (429)
T ss_dssp EEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred EEEeehhhCCcccc-hHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHH
Confidence 99999999999998 566677788899999999999999 9999999999998887653 2557999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG 444 (480)
Q Consensus 365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 444 (480)
.++|+.++++++.+++++++++++++|+++.. ++.+..+++.|+++++++... .....+.+.|+++||++.
T Consensus 321 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~ 391 (429)
T 1s0a_A 321 NASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIR 391 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEe
Confidence 99999888778899999999999999988643 566667888899999987431 013567888889999998
Q ss_pred ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+. ++++||+|++.+|++|+++++++|++++++
T Consensus 392 ~~---~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 392 PF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred cc---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 75 478999999999999999999999998754
No 34
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=9.1e-53 Score=431.58 Aligned_cols=415 Identities=29% Similarity=0.483 Sum_probs=337.2
Q ss_pred CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 011669 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL 137 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~ 137 (480)
++.+++++..+++.++...+ .|+++.+++|+++||.+|++||||.++.++.++||+||+|.+|+.+++.+..+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~ 80 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV 80 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence 56778888888887654432 3899999999999999999999999999999999999999999999998754432 34
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccccc
Q 011669 138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV 215 (480)
Q Consensus 138 ~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~ 215 (480)
++++...+|+++|+++++++. ++|+|++||+||++.++++++.++++++||+++++|||....++..++.. .++....
T Consensus 81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~ 160 (426)
T 1sff_A 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG 160 (426)
T ss_dssp EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence 567889999999999995434 78999999999999999988777676799999999999988777665532 1221111
Q ss_pred C--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
. .++..++++..+++ .+....+++|+++++.. .++++++|++||+++++|.+.++++++++|+++|++||++||
T Consensus 161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 24555554432211 11223367888888631 124789999999988899788899999999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~ 372 (480)
+||+|+||+++| .+++++..++.||++||||++++|+|+||+++++++++.+....+..|++.|+++++++.++|+.++
T Consensus 238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~ 316 (426)
T 1sff_A 238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE 316 (426)
T ss_dssp EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 6666777888999999999999999999999999999888765667899999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV 452 (480)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 452 (480)
++++.+++++++++++++|+++...++.+..+++.|+++++++......+.|.......+.+.|+++||++.++..+.++
T Consensus 317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~ 396 (426)
T 1sff_A 317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV 396 (426)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence 77889999999999999999986667767777888999999985422122233345677888999999999998766789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 453 FRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 453 iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+||++++.++++++++++++|++++++
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=5.6e-53 Score=428.57 Aligned_cols=380 Identities=27% Similarity=0.482 Sum_probs=325.6
Q ss_pred HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh
Q 011669 62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~ 141 (480)
+++++.++++.+. +.+.|+++.+|+|+++||.||++||||.++++++++||+||+|.+|+.+++++..+....+.++
T Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 78 (392)
T 3ruy_A 2 DIIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78 (392)
T ss_dssp CHHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEET
T ss_pred hHHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCH
Confidence 3566667777554 3456899999999999999999999999999999999999999999999998877765567788
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCcccc
Q 011669 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFN 213 (480)
Q Consensus 142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 213 (480)
...+++++|++.++ .++++|++||+||++.|+++++.. +++++||++.++|||....++.+++...++..
T Consensus 79 ~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 79 QLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp THHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred HHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 89999999999985 679999999999999999998876 56789999999999999999888776544433
Q ss_pred ccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669 214 VVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291 (480)
Q Consensus 214 ~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 291 (480)
... .++..++. +| .++++++++ +++++|++++++|++|.+.++++|+++|+++|++||+++
T Consensus 157 ~~~~~~~~~~~~~---------~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~l 219 (392)
T 3ruy_A 157 FGPMLPGIIVIPY---------GD----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLF 219 (392)
T ss_dssp CCSCCSSEEEECT---------TC----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEE
T ss_pred cCCCCCCCeeeCc---------cc----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 222 23333322 13 678888875 479999999999999999989999999999999999999
Q ss_pred EEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV 370 (480)
Q Consensus 292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~ 370 (480)
|+||+|+|||++| ..+..+..++.||++||||++++| +|+||+++++++++.+....+..+++.|+++++++.++|+.
T Consensus 220 i~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 298 (392)
T 3ruy_A 220 VADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298 (392)
T ss_dssp EEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred EEeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 677778889999999999999999 99999999999999888777888999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC
Q 011669 371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG 450 (480)
Q Consensus 371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 450 (480)
++.+++.++++++.+++++.|+++ ..+.+..+++.|.++++.+.. ....+.+.|+++||++.+++ .
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~--~ 364 (392)
T 3ruy_A 299 LEEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKETH--E 364 (392)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCCBT--T
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEecCC--C
Confidence 877788899999999999988776 235677788889999988632 13568888999999999876 6
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 451 NVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 451 ~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+++||+|++.+|++++++++++|+++++
T Consensus 365 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 365 NVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999873
No 36
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=3.9e-52 Score=424.05 Aligned_cols=374 Identities=32% Similarity=0.539 Sum_probs=323.6
Q ss_pred ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC
Q 011669 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN 157 (480)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~ 157 (480)
+...|+++++|+|+++||.+|++||||.++.+.+++||+||+|.+++.+++.+..+....+.++...+++++|++.++
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 95 (406)
T 4adb_A 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF-- 95 (406)
T ss_dssp CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--
T ss_pred cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--
Confidence 345689999999999999999999999999999999999999999999999887666566778899999999999995
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcC
Q 011669 158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYR 229 (480)
Q Consensus 158 ~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~ 229 (480)
.++++|++||+||++.|+++++.+ +++++||+++++||+....+...++...+...... .++..++.+
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN---- 171 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----
Confidence 458999999999999999988765 67789999999999999988888775544433322 234444322
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (480)
Q Consensus 230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~ 309 (480)
| .++|+++++ +++++|+++|++++||.+.++.+++++|.++|++||+++|+||+|+||+++| ..++
T Consensus 172 -----d----~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~ 237 (406)
T 4adb_A 172 -----D----INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYA 237 (406)
T ss_dssp -----C----HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSH
T ss_pred -----c----HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHH
Confidence 2 567777664 4799999999999999888899999999999999999999999999999999 6667
Q ss_pred ccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE 389 (480)
Q Consensus 310 ~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~ 389 (480)
++..++.||++||||++++|+|+||+++++++++.+....+..++++|+++++++.++|+.++++++.++++++++++++
T Consensus 238 ~~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (406)
T 4adb_A 238 YMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVE 317 (406)
T ss_dssp HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77789999999999999999999999999999999888778899999999999999999988778899999999999999
Q ss_pred HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669 390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL 469 (480)
Q Consensus 390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~ 469 (480)
.|+++...++.+..+++.|+++++++.... ......+.+.|+++||++.+++ .+++||+|++.+|+++++++
T Consensus 318 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~ 389 (406)
T 4adb_A 318 RLNTINHRYGLFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTG 389 (406)
T ss_dssp HHHHHHHHHCCEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHH
Confidence 999987777777888999999999985421 0124678889999999999876 68999999999999999999
Q ss_pred HHHHHHHHhh
Q 011669 470 VDVMDYSLSK 479 (480)
Q Consensus 470 l~~l~~~l~~ 479 (480)
+++|++++++
T Consensus 390 ~~~l~~~l~~ 399 (406)
T 4adb_A 390 LDRFAAACEH 399 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=1e-48 Score=397.97 Aligned_cols=370 Identities=34% Similarity=0.563 Sum_probs=306.8
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL 158 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~ 158 (480)
...|+.+.+++|+++||.+|++||||.+++++..+||++|+|.+|+.+++++..+....|..+...+++++|+++++ .
T Consensus 20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~ 97 (397)
T 2ord_A 20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G 97 (397)
T ss_dssp CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence 35689999999999999999999999999999999999999999999999886554444567888999999999985 5
Q ss_pred CEEEEeCCHHHHHHHHHHHHHhh-----cCCceEEEEcCCcccccccccccccCCCccccc-cC-CCeeEecCCCCcCCC
Q 011669 159 KVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TGVHHALNPDPYRGV 231 (480)
Q Consensus 159 ~~v~f~~sGseA~~~Alk~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~p~~~~~~ 231 (480)
++++|++||+||++.|++.++.+ +++++||+++++||+....++...+...++... +. .++..++.
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------- 170 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------- 170 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence 78999999999999999988754 466789999999999988666555432111111 11 23333332
Q ss_pred CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669 232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311 (480)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~ 311 (480)
+| .++|++.++ +++++|+++|++|++|.+.++.+++++|.++|++||+++|+||+|+||+++| ..+.++
T Consensus 171 --~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~ 239 (397)
T 2ord_A 171 --NN----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ 239 (397)
T ss_dssp --TC----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred --CC----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence 13 577888775 3789999999999999867788999999999999999999999999999988 555556
Q ss_pred ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL 391 (480)
Q Consensus 312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L 391 (480)
.++..||++||||++++|+|+||++++++++ .+....+..+++.|+++++++.++|+.++++++.++++++++++++.|
T Consensus 240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 318 (397)
T 2ord_A 240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318 (397)
T ss_dssp HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999877 666545678899999999999999998877788999999999999999
Q ss_pred HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471 (480)
Q Consensus 392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~ 471 (480)
+++...++.+..+++.|.++++++.... ....+.+.|+++||++.+++ .+++||+|++..++++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~ 388 (397)
T 2ord_A 319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVE 388 (397)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHH
Confidence 8875456766667888999999874321 14568888999999999875 5789999999999999999999
Q ss_pred HHHHHHhh
Q 011669 472 VMDYSLSK 479 (480)
Q Consensus 472 ~l~~~l~~ 479 (480)
+|++++++
T Consensus 389 ~l~~~l~~ 396 (397)
T 2ord_A 389 TLKKVLQG 396 (397)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999875
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=4.7e-48 Score=392.71 Aligned_cols=386 Identities=30% Similarity=0.496 Sum_probs=310.8
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 140 (480)
+++++..++|++.....+...|+.+.+++|+++||.+|+.||||.++.+++.+||++|+|.+|+.+++.+..+....|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~ 86 (395)
T 1vef_A 7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86 (395)
T ss_dssp --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence 45666666775411012335688999999999999999999999999998999999999999999999876554445668
Q ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc-cC-CC
Q 011669 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TG 218 (480)
Q Consensus 141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~~-~g 218 (480)
+...+++++|+++++.+.++|++++||+||++.+++.++.++++++||+++++||+.....+...+........ +. .+
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~ 166 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP 166 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence 88999999999999766789999999999999999987755678899999999999887666554432111100 10 12
Q ss_pred eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298 (480)
Q Consensus 219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t 298 (480)
+..++. .| .++++++++ +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|+
T Consensus 167 ~~~~~~---------~d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~ 229 (395)
T 1vef_A 167 VEFIPY---------ND----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229 (395)
T ss_dssp EEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eeEeCC---------Cc----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 222221 13 577888775 3689999999999999888899999999999999999999999999
Q ss_pred CccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHH
Q 011669 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378 (480)
Q Consensus 299 gfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~ 378 (480)
||++.| ..+.++..++.+|+++|||.+++|+|+||+++++++++.+....+..+++.|+++++++.++|+.+.++++.+
T Consensus 230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 308 (395)
T 1vef_A 230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE 308 (395)
T ss_dssp TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 998888 5555666788899999999999999999999999998888765567889999999999999999887777888
Q ss_pred HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcCCCEEEEeC
Q 011669 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFYGNVFRITP 457 (480)
Q Consensus 379 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p 457 (480)
+++++.+++++.|+++. .+.+..+++.|.++++++..+ ...+.+.|+ ++||++.+++ .+++||++
T Consensus 309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~--~~~iRi~~ 374 (395)
T 1vef_A 309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG--PTVIRFLP 374 (395)
T ss_dssp HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS--TTEEEECC
T ss_pred HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC--CCEEEEeC
Confidence 89999999988887752 234455677888999987421 356788888 8999999864 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 011669 458 PLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 458 ~~~~t~~~id~~l~~l~~~l~ 478 (480)
++.++++++++++++|+++++
T Consensus 375 ~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 375 PLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp CTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999998863
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=9.6e-46 Score=372.80 Aligned_cols=360 Identities=36% Similarity=0.605 Sum_probs=294.0
Q ss_pred CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669 80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK 159 (480)
Q Consensus 80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~ 159 (480)
+.|+.+.+|+|+++||.+|+.||||.+|.+.+.+||.+|++.+++.+++.+..+....|+++...+++++|+++++.+ +
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~ 87 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G 87 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence 458899999999999999999999999998889999999999999999987644434566778899999999998642 8
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCccccc-c-CCCeeEecCCCCcCCCC
Q 011669 160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-V-QTGVHHALNPDPYRGVF 232 (480)
Q Consensus 160 ~v~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~p~~~~~~~ 232 (480)
++++++||++|++.++++++.+. ++++|++.+++||+....+....+...+.... + ..++..++.+
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 160 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN------- 160 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT-------
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc-------
Confidence 89999999999999999865443 44899999999999988777665433221111 1 1233333321
Q ss_pred CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc
Q 011669 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~ 312 (480)
| .++|+++++ +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++|++++ ..+..+.
T Consensus 161 --d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~ 229 (375)
T 2eh6_A 161 --D----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH 229 (375)
T ss_dssp --C----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred --h----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence 2 567776664 3789999999999999998899999999999999999999999999999887 4445666
Q ss_pred cCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392 (480)
Q Consensus 313 ~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~ 392 (480)
.+..+|+++|||.+++|+|+||+++++++++.+....+..+++.++++++++.++|+.++ ++.++++++++++++.|+
T Consensus 230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~ 307 (375)
T 2eh6_A 230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK 307 (375)
T ss_dssp GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 777899999999999999999999999998888775567888999999999999998765 677888888888888887
Q ss_pred HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHH
Q 011669 393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472 (480)
Q Consensus 393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~ 472 (480)
++ +. ..+++.|.++++++..+ ...+.+.|+++||.+.+++ .+++||++++..+++++++++++
T Consensus 308 ~~----~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~ 370 (375)
T 2eh6_A 308 EL----GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISV 370 (375)
T ss_dssp HT----TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHH
T ss_pred HH----hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 65 22 34567889999887321 2467888889999998864 57899999999999999999999
Q ss_pred HHHHH
Q 011669 473 MDYSL 477 (480)
Q Consensus 473 l~~~l 477 (480)
|++++
T Consensus 371 l~~~l 375 (375)
T 2eh6_A 371 LREIL 375 (375)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98763
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3e-41 Score=345.88 Aligned_cols=362 Identities=12% Similarity=0.060 Sum_probs=265.4
Q ss_pred CCCeEEEeeeccEEEeCC--CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--
Q 011669 80 SKPLNVVDGKMQYLFDEN--GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-- 155 (480)
Q Consensus 80 ~~p~~~~~g~G~~l~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~-- 155 (480)
..++...+|+|+++||.+ |++||||..|.. . .++||+|++|+.+++++..+....+..+...++++++++.++
T Consensus 40 ~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~-~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 40 FTTRPDRLNQFTYKWKTSENNPELLQMWVADM--D-FLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--C-SCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCcccccCCCCCccccccCCCCCeeecccCCC--C-CCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 346778899999999999 899999977643 3 368999999999999875443333345667788888888765
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCCC
Q 011669 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGA 234 (480)
Q Consensus 156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~ 234 (480)
.+.++|+|++||+||++.|++.+.. ++++||++.++||+.......... ..+.+|.. ..+.|..
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~ 181 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFEI 181 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEEC
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCeee
Confidence 4567899999999999999998753 568899999999997766554322 11211111 0111212
Q ss_pred ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc----
Q 011669 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---- 310 (480)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---- 310 (480)
| +++|+++++. .++++|++++++|++|.+ ++++++++|+++|++||+++|+||+|++|+++|.....+
T Consensus 182 d----~~~le~~i~~---~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 253 (421)
T 3l8a_A 182 D----FEQLEKDIID---NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLD 253 (421)
T ss_dssp C----HHHHHHHHHH---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred C----HHHHHHHhhc---cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcC
Confidence 3 6788888863 378999999999999955 588889999999999999999999999999888322222
Q ss_pred -cccCCCcceeeeccccc-cCccccccccC-HHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011669 311 -EAHGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386 (480)
Q Consensus 311 -~~~~~~pDivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~ 386 (480)
+..+..+++.++||+++ +|+|+||++++ +++++.+.... ...++++|+++++++.++|+.. +++.+++.+..+.
T Consensus 254 ~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~--~~~~~~~~~~~~~ 331 (421)
T 3l8a_A 254 ASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG--KPWLEELKTVIEG 331 (421)
T ss_dssp TTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred chhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 22355677889999998 89999999998 89988887654 3456689999999999999853 3334444444444
Q ss_pred HHHHHHHhHHhcCceeeEeccceeEE-EEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCC
Q 011669 387 LKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLC 460 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~v~g~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~ 460 (480)
+++.|.+..++++.+..+++.|.++. +++..... ....+.+.|++ +||++.++..+ .+++||+++
T Consensus 332 ~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-- 402 (421)
T 3l8a_A 332 NIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-- 402 (421)
T ss_dssp HHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--
T ss_pred HHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--
Confidence 44444443333355667777777664 77743111 12457777865 59999986533 479999977
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 011669 461 FTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l~ 478 (480)
+++++|++++++|+++++
T Consensus 403 ~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 403 TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999999875
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=1.7e-37 Score=318.68 Aligned_cols=368 Identities=14% Similarity=0.086 Sum_probs=273.4
Q ss_pred CCHHHHHHHHhhhcCCccccccCCCeEEE-eeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhccccc
Q 011669 58 PSADEILAKRKTFLSPSLFHLYSKPLNVV-DGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHST 135 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~ 135 (480)
++++++.++..+....++. ++.+..+. +++|+++|| ||++||||.+|. ++| |+||+|.+++.+++.+.....
T Consensus 25 ~~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~ 98 (427)
T 2w8t_A 25 SKFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGT 98 (427)
T ss_dssp GGGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCC
Confidence 3566777777776655511 23345677 999999999 999999999884 478 799999999999998743211
Q ss_pred c-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669 136 V-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (480)
Q Consensus 136 ~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~ 210 (480)
. .+.++...+++++|+++++ .+.+++++||++||..+++.+. .+++.|++. ..+|+.....+...+
T Consensus 99 ~~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~al~~l~--~~gd~vl~~-~~~h~~~~~~~~~~g---- 169 (427)
T 2w8t_A 99 CGSRMLNGTFHDHMEVEQALRDFYG--TTGAIVFSTGYMANLGIISTLA--GKGEYVILD-ADSHASIYDGCQQGN---- 169 (427)
T ss_dssp CSCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHS--CTTCEEEEE-TTCCHHHHHHHHHSC----
T ss_pred cccccccCCcHHHHHHHHHHHHHhC--CCceEEecCcHHHHHHHHHHhc--CCCCEEEEC-CcccHHHHHHHHHcC----
Confidence 1 1246788999999999995 3578899999999999998753 244455554 555565554444332
Q ss_pred cccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669 211 KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (480)
Q Consensus 211 ~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 290 (480)
...+.+|. +| .++|+++++...++++++|+++++++++|.+.+ +++|+++|++||++
T Consensus 170 --------~~~~~~~~-------~d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~ 226 (427)
T 2w8t_A 170 --------AEIVRFRH-------NS----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAM 226 (427)
T ss_dssp --------SEEEEECT-------TC----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCE
T ss_pred --------CeeEEeCC-------CC----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCE
Confidence 22222221 23 678888887532227899999999999999876 99999999999999
Q ss_pred EEEcccccCc--cccCCCcccccccCCCcc----eeeeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHH
Q 011669 291 CIADEVQAGF--ARTGSHFWGFEAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTA 362 (480)
Q Consensus 291 lI~DEv~tgf--gr~G~~~~~~~~~~~~pD----ivt~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~a 362 (480)
+|+||+|+++ +++| .. ..+.+++.+| +.||||++| .+.||+++++++++.+.... +..+++.|++.++
T Consensus 227 li~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~a 302 (427)
T 2w8t_A 227 VLVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVA 302 (427)
T ss_dssp EEEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHH
T ss_pred EEEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHH
Confidence 9999999974 3334 22 2344566555 668999996 45599999999988887642 3356678899999
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669 363 AGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 363 aa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 440 (480)
++.++|+.+++ ++..++++++++++++.|+++ .+... ..+ .|.++++.+. .......+.+.|+++|
T Consensus 303 a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~G 370 (427)
T 2w8t_A 303 TATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLG--TETCDSAIVAVMLE--------DQEQAAMMWQALLDGG 370 (427)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEES--CSSCCSSEEEEEES--------SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCccc--CCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCC
Confidence 99999998866 678889999999999999886 33221 133 6788888872 2334677889999999
Q ss_pred ceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 441 VLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 441 v~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|++.++..+ .+++||+++..+|++++++++++|++++++
T Consensus 371 i~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 371 LYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp EECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999886432 258999999989999999999999998764
No 42
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-36 Score=307.60 Aligned_cols=360 Identities=11% Similarity=0.040 Sum_probs=258.3
Q ss_pred eEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--CCCCE
Q 011669 83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKV 160 (480)
Q Consensus 83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--~~~~~ 160 (480)
++..+|+|+++||.+|++||||..|... .+.+|+|.+++.+++.+..+.......+...++++.+++.++ .+.++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~~---~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEMD---FKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCCS---SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCCC---CCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6677899999999999999999987533 358999999999998874332222234566778888877754 45678
Q ss_pred EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc-CCCCCCChHHH
Q 011669 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY-RGVFGADGEMY 239 (480)
Q Consensus 161 v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~d~~~~ 239 (480)
|+|++||++|++.+++.+. .+++.|++.+++||+........ |...+.+|..+ .+.|..|
T Consensus 88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d---- 148 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGN-------------GRRVISSDLIYENSKYSVN---- 148 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC----
T ss_pred EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHc-------------CCEEEEeeeeecCCceeec----
Confidence 9999999999999999864 36789999999999876655433 22223332211 1122223
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC-CCcc
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG-VVPD 318 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~-~~pD 318 (480)
.++++++++. .++++|+++.+++++|.+. +++.+++|.++|++||+++|+||+|++|++.|.....+...+ ..+|
T Consensus 149 ~~~l~~~l~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 224 (391)
T 3dzz_A 149 WADLEEKLAT---PSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN 224 (391)
T ss_dssp HHHHHHHHTS---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred HHHHHHHHhc---cCceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence 6788888862 3678888888889999764 677799999999999999999999999988773333333333 2267
Q ss_pred ----eeeeccccc-cCccccccccC-HHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q 011669 319 ----IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKE 389 (480)
Q Consensus 319 ----ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~ 389 (480)
+.++||.+| +|+|+||++++ +++++.+..... ..+++.|+++++++.++|+...+ ++..++.+++.+++.+
T Consensus 225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (391)
T 3dzz_A 225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE 304 (391)
T ss_dssp GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 557899998 89999999998 888888765432 45678899999999999875321 2344444555555555
Q ss_pred HHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCH
Q 011669 390 RLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTK 463 (480)
Q Consensus 390 ~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~ 463 (480)
.|++. ++.+....+. +.++++.+.... .....+.+.|+ ++||++.++..+ .+++||+++ +++
T Consensus 305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~ 372 (391)
T 3dzz_A 305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPK 372 (391)
T ss_dssp HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCH
T ss_pred HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCH
Confidence 55442 3333333344 445567764311 12466888885 899999987543 378999966 699
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011669 464 EDADYLVDVMDYSLSKM 480 (480)
Q Consensus 464 ~~id~~l~~l~~~l~~~ 480 (480)
+++++++++|+++++++
T Consensus 373 ~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 373 ELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998763
No 43
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.4e-35 Score=300.66 Aligned_cols=350 Identities=16% Similarity=0.170 Sum_probs=261.4
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHH
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS 152 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~ 152 (480)
++.|..+++++|.|++| +|++||||.++ .++| |++|++.+++.+++.+..+... .+..+...+++++|++
T Consensus 24 ~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 99 (399)
T 3tqx_A 24 YKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISE 99 (399)
T ss_dssp CCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHH
T ss_pred ccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHH
Confidence 45577889999999999 99999999988 4578 7999999999999987543221 1245678999999999
Q ss_pred hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (480)
Q Consensus 153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (480)
+++. +..++++||++|++.+++.+.. +++.|++..++|.+ ........+ ...+.+|.
T Consensus 100 ~~~~--~~~i~~~sGt~a~~~~l~~~~~--~gd~v~~~~~~~~~-~~~~~~~~g------------~~~~~~~~------ 156 (399)
T 3tqx_A 100 FLGT--DDTILYSSCFDANGGLFETLLG--PEDAIISDELNHAS-IIDGIRLCK------------AQRYRYKN------ 156 (399)
T ss_dssp HHTC--SEEEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHH-HHHHHHSCC------------SEEEEECT------
T ss_pred HHCC--CcEEEECchHHHHHHHHHHhcC--CCCEEEECCcccHH-HHHHHHHcC------------CceeEeCC------
Confidence 9864 3567778899999999986532 55667666666544 333333332 22222221
Q ss_pred CCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcc
Q 011669 233 GADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFW 308 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~ 308 (480)
.| .++++++++.... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+ ++.+ . .
T Consensus 157 -~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~ 225 (399)
T 3tqx_A 157 -NA----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R-G 225 (399)
T ss_dssp -TC----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-C
T ss_pred -CC----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-c
Confidence 12 3467777764211 27899999999999999876 9999999999999999999994 54 4444 1 2
Q ss_pred cccccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHh-h-hhHHHHHH
Q 011669 309 GFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVI-Q-KDKLQNNA 380 (480)
Q Consensus 309 ~~~~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i-~-~~~~~~~~ 380 (480)
..+.+++ .+|++ ++||+++ |++.||+++++++++.+..... ..+.+.+++.++++.++++.+ + .++..+++
T Consensus 226 ~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (399)
T 3tqx_A 226 TPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQL 304 (399)
T ss_dssp HHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 2445555 67888 8999999 6788999999999988765322 234467899999999999877 3 25677888
Q ss_pred HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEE
Q 011669 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRI 455 (480)
Q Consensus 381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi 455 (480)
+++.+++++.|+++ .+. .+++.|.++++.+. .......+.+.|+++||++.++.. ..+++||
T Consensus 305 ~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi 371 (399)
T 3tqx_A 305 QENSRYFRAGMEKL--GFQ---LVPGNHPIIPVMLG--------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRV 371 (399)
T ss_dssp HHHHHHHHHHHHHH--TCC---BCCCSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEE
Confidence 88888888888876 222 23677888888873 233467788999999999986532 1358999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+++..+|++++++++++|+++++++
T Consensus 372 ~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 372 QMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 44
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=2e-35 Score=300.13 Aligned_cols=351 Identities=15% Similarity=0.187 Sum_probs=260.8
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc--ccc---CChHHHHHHHHHHH
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST--VLY---LNHAIADFAEALAS 152 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~l~e~L~~ 152 (480)
++.|..+.+++|+++||.||++||||.+| +++|| ++|+|.+++.+++.+..+.. ..| ..+...+++++|++
T Consensus 25 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 101 (401)
T 1fc4_A 25 FKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA 101 (401)
T ss_dssp CCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred eeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHH
Confidence 45688899999999999999999999988 35886 89999999999988743321 122 25778899999999
Q ss_pred hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (480)
Q Consensus 153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (480)
+++.+ ..+++++|++|++.+++.+.. +++.|++..+. |+.....+... |+..+.++.
T Consensus 102 ~~g~~--~~i~~~sGs~a~~~~~~~~~~--~gd~v~~~~~~-~~~~~~~~~~~------------g~~~~~~~~------ 158 (401)
T 1fc4_A 102 FLGME--DAILYSSCFDANGGLFETLLG--AEDAIISDALN-HASIIDGVRLC------------KAKRYRYAN------ 158 (401)
T ss_dssp HHTCS--EEEEESCHHHHHHTTHHHHCC--TTCEEEEETTC-CHHHHHHHHTS------------CSEEEEECT------
T ss_pred HhCCC--cEEEeCChHHHHHHHHHHHcC--CCCEEEEcchh-HHHHHHHHHHc------------CCceEEECC------
Confidence 99654 567888999999999887632 44556655554 54443333322 333333331
Q ss_pred CCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Ccc-ccCCCcc
Q 011669 233 GADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFA-RTGSHFW 308 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfg-r~G~~~~ 308 (480)
.| .++++++++.... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+. ++| ..+
T Consensus 159 -~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~ 228 (401)
T 1fc4_A 159 -ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS 228 (401)
T ss_dssp -TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH
T ss_pred -CC----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc
Confidence 23 5677777763211 15789999999999998876 9999999999999999999994 873 556 322
Q ss_pred cccccCCC--ccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHH
Q 011669 309 GFEAHGVV--PDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAH 381 (480)
Q Consensus 309 ~~~~~~~~--pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~ 381 (480)
.+..++. .|++ ++||.++++. .||+++++++++.+.... +..+++.|+++++++.++|+.+++ +++.++++
T Consensus 229 -~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 306 (401)
T 1fc4_A 229 -HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLW 306 (401)
T ss_dssp -HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2223443 4676 8999997654 499999999988876533 334678899999999999998754 56788888
Q ss_pred HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEe
Q 011669 382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRIT 456 (480)
Q Consensus 382 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~ 456 (480)
++.+++++.|+++ .+.. ..+.|.++++++.. ......+.+.|.++||++.++..+ .+++||+
T Consensus 307 ~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~ 373 (401)
T 1fc4_A 307 ANARQFREQMSAA--GFTL---AGADHAIIPVMLGD--------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQ 373 (401)
T ss_dssp HHHHHHHHHHHHT--TCCB---CCSSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHc--CCcc---cCCCCCEEEEEcCC--------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEE
Confidence 8888888888875 3332 24678889988732 234567888999999999886432 3589999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 457 PPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 457 p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
++..+|++++++++++|+++++++
T Consensus 374 ~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 374 MSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998899999999999999998753
No 45
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=1.3e-35 Score=299.39 Aligned_cols=358 Identities=10% Similarity=0.058 Sum_probs=243.2
Q ss_pred CeEEEeeeccEEEeCC-CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--CCC
Q 011669 82 PLNVVDGKMQYLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNL 158 (480)
Q Consensus 82 p~~~~~g~G~~l~d~d-G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--~~~ 158 (480)
+++..+++|+++||.+ |+++|||..|... + +.+|+|.+|+.+++.+..+.......+...++++.+++.++ .+.
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIADMD--F-EVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSSCS--S-CCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccccCC--C-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 4567889999999954 6899999988533 3 58999999999999864332222356788889999988876 456
Q ss_pred CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChH
Q 011669 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGE 237 (480)
Q Consensus 159 ~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~ 237 (480)
++|+|++||++|++.+++.+.. +++.|++.+++||+....+... |...+.+|.... +.|..|
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d-- 145 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFTK--ENESVLVQPPIYPPFFEMVTTN-------------NRQLCVSPLQKQNDTYAID-- 145 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHCC--TTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC--
T ss_pred hhEEEcCCHHHHHHHHHHHhCC--CCCEEEEcCCCcHHHHHHHHHc-------------CCEEEeccceecCCcEEEc--
Confidence 7899999999999999997743 6789999999999877554433 222233322111 112223
Q ss_pred HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc-----
Q 011669 238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----- 312 (480)
Q Consensus 238 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----- 312 (480)
.++++++++ .++++|+++.+++++|.+. +.+.+++|.++|++||+++|+||+|++|+++|.....+..
T Consensus 146 --~~~l~~~l~----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 218 (383)
T 3kax_A 146 --FEHLEKQFQ----QGVKLMLLCSPHNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEEL 218 (383)
T ss_dssp --HHHHHHHHT----TTCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred --HHHHHHHhC----cCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccc
Confidence 678888883 3667777777888888764 7788999999999999999999999999887732222211
Q ss_pred cCCCcceeeeccccc-cCcccccccc-CHHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Q 011669 313 HGVVPDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYL 387 (480)
Q Consensus 313 ~~~~pDivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l 387 (480)
.+..+++.++||.++ +|+|+||+++ ++++++.+..... ..+++.|+++++++.++|+..++ ++..+++++..+++
T Consensus 219 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (383)
T 3kax_A 219 AARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFA 298 (383)
T ss_dssp HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 244566778999999 8999999998 6888887765433 34558899999999988874221 22334444444555
Q ss_pred HHHHHHhHHhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCC
Q 011669 388 KERLTALKDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCF 461 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~ 461 (480)
.+.|++. ++.+..+.+.+. +.++++.... .....+.+.|+ ++||++.++..+ .+++||+++ .
T Consensus 299 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~ 366 (383)
T 3kax_A 299 CEYIKDH---IPTLSVMKPEGSFLLWIDCSALN-------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--C 366 (383)
T ss_dssp HHHHHHH---CTTCEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--S
T ss_pred HHHHHhh---CCCceEecCCceEEEEEEccccC-------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--C
Confidence 5444442 344444455544 4457764321 12466888887 689999986433 378999965 6
Q ss_pred CHHHHHHHHHHHHHHHh
Q 011669 462 TKEDADYLVDVMDYSLS 478 (480)
Q Consensus 462 t~~~id~~l~~l~~~l~ 478 (480)
+++++++++++|++++.
T Consensus 367 ~~~~i~~~l~~l~~~l~ 383 (383)
T 3kax_A 367 PRSVLEEILNRLRHTFS 383 (383)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999998863
No 46
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.3e-35 Score=298.77 Aligned_cols=353 Identities=14% Similarity=0.068 Sum_probs=246.9
Q ss_pred EEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--CCCCEE
Q 011669 84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKVV 161 (480)
Q Consensus 84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v 161 (480)
...+|+|+++||.||++||||.+|.. .+ +.+|+|.+|+.+++.+..+.......+....+++.+.+.++ .+.++|
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAES--DF-STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSCC--CS-CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHhcCCCCceeeccCCCeeeecccCC--CC-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence 34589999999999999999998853 33 48999999999999863222111114455555555554432 456789
Q ss_pred EEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669 162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (480)
Q Consensus 162 ~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (480)
+|++||++|++.+++.+.. +++.|++..++||+....+..... .+..++.... .| .+
T Consensus 85 ~~t~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~------~d----~~ 141 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG------IN----LH 141 (377)
T ss_dssp EEESCHHHHHHHHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS------CC----HH
T ss_pred EEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC------CC----HH
Confidence 9999999999999997643 568899999999987765444322 1222222111 12 67
Q ss_pred HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-CCcccc---cccCCCc
Q 011669 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGF---EAHGVVP 317 (480)
Q Consensus 242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-~~~~~~---~~~~~~p 317 (480)
++++.++. ++++++++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|+++| .....+ +..+..+
T Consensus 142 ~l~~~l~~----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i 216 (377)
T 3fdb_A 142 DVEKGFQA----GARSILLCNPYNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCI 216 (377)
T ss_dssp HHHHHHHT----TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEE
T ss_pred HHHHHhcc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEE
Confidence 88888874 345555555588888765 77789999999999999999999999998776 222222 2233446
Q ss_pred ceeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 011669 318 DIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 318 Divt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~ 393 (480)
++.++||.+| +|+|+||++. ++++++.+.......+++.|+++++++.++|+..++ ++..++++++.+++.+.|++
T Consensus 217 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 217 TITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp EEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778999997 7999998776 788888887766667889999999999999985322 23444455555555555544
Q ss_pred hHHhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHHH
Q 011669 394 LKDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDAD 467 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~id 467 (480)
. ++.+....+.+. ++++++...... ..+.+.|+++ ||++.++..+ .+++||+++ .++++++
T Consensus 297 ~---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~ 363 (377)
T 3fdb_A 297 R---IPGAKITPMQATYLMWIDFRDTTIE--------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLE 363 (377)
T ss_dssp H---STTCEECCCSBCSEEEEECTTSCCC--------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHH
T ss_pred h---CCCceEecCCeeEEEEEECcccCCC--------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHH
Confidence 2 343444444444 447777432111 2355666655 9999987543 479999966 4899999
Q ss_pred HHHHHHHHHHhhC
Q 011669 468 YLVDVMDYSLSKM 480 (480)
Q Consensus 468 ~~l~~l~~~l~~~ 480 (480)
+++++|+++++++
T Consensus 364 ~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 364 EAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998753
No 47
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=8.4e-35 Score=294.60 Aligned_cols=359 Identities=9% Similarity=-0.014 Sum_probs=231.7
Q ss_pred EEEeeeccEEEeCCCC-----EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh-HHHHHHHHHHHhCC--
Q 011669 84 NVVDGKMQYLFDENGR-----RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP-- 155 (480)
Q Consensus 84 ~~~~g~G~~l~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~~-- 155 (480)
+-.+|+|+++||.+|+ +||||..+.. .+| .+|+|.+++.+++....+.......+ ...++++.+.+.++
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 4468999999999998 7899977654 466 78999999999987532111111334 55566666655544
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCC
Q 011669 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGA 234 (480)
Q Consensus 156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~ 234 (480)
.+.++|++++||++|++.+++.+.. ++++|++.+++||+....+.... ...+.+|.... +.|..
T Consensus 85 ~~~~~v~~t~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~ 149 (390)
T 1d2f_A 85 IDSQTVVYGPSVIYMVSELIRQWSE--TGEGVVIHTPAYDAFYKAIEGNQ-------------RTVMPVALEKQADGWFC 149 (390)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHSSC--TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEECEECSSSEEC
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHCC-------------CEEEEeecccCCCcccc
Confidence 4567899999999999999997643 56899999999999776554322 11122211111 12223
Q ss_pred ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC
Q 011669 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314 (480)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~ 314 (480)
| .+++++.++. .++++|++...++++|.+ .+.+++++|.++|++||+++|+||+|++|.++|..+..+...+
T Consensus 150 d----~~~l~~~l~~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 221 (390)
T 1d2f_A 150 D----MGKLEAVLAK---PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA 221 (390)
T ss_dssp C----HHHHHHHHTS---TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC
T ss_pred C----HHHHHHHhcc---CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcc
Confidence 4 6788888853 257777766668888876 4788999999999999999999999999987763222221111
Q ss_pred CC-cc-eeeeccccc-cCccccccccC-HHHHHhhcCCCc-cccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011669 315 VV-PD-IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK 388 (480)
Q Consensus 315 ~~-pD-ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~-~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~ 388 (480)
.. +| +.++||.++ +|+|+||++++ +++++.+..... ..++ +.|+++++++.++|+.. +++.++.++.....+
T Consensus 222 ~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~ 299 (390)
T 1d2f_A 222 RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNL 299 (390)
T ss_dssp CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence 11 13 789999999 89999999985 788887765444 4565 77899999999988742 333444444444444
Q ss_pred HHHHHhHHh-cCceeeEeccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCC
Q 011669 389 ERLTALKDK-YGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCF 461 (480)
Q Consensus 389 ~~L~~l~~~-~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~ 461 (480)
+.+.+..++ ++.+..+++.| +++|+++.... .....+.+.|. ++||++.++..+ .+++||+++.
T Consensus 300 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-- 370 (390)
T 1d2f_A 300 TYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-- 370 (390)
T ss_dssp HHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--
T ss_pred HHHHHHHHhhCCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--
Confidence 444443333 44344445555 45577774210 01456888888 689999987543 3689999764
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011669 462 TKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 462 t~~~id~~l~~l~~~l~~ 479 (480)
+++++++++++|++++++
T Consensus 371 ~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 371 PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 689999999999998865
No 48
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1e-35 Score=300.86 Aligned_cols=357 Identities=12% Similarity=0.049 Sum_probs=253.7
Q ss_pred eEEEeeeccEEEeCCCCEE-----EeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--
Q 011669 83 LNVVDGKMQYLFDENGRRY-----LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-- 155 (480)
Q Consensus 83 ~~~~~g~G~~l~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~-- 155 (480)
+...+|+|+++||.+|++| |||..|... .+.+|+|.+|+.+++.+..+....+..+...++++.+++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADMD---FKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSCS---SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccCCC---CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4456889999999987655 999887533 367899999999999875443333456777889999988876
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC--cCCCCC
Q 011669 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFG 233 (480)
Q Consensus 156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~--~~~~~~ 233 (480)
.+.++|++++||++|++.+++.+.. +++.|++..++||+........ |...+.+|.. ..+.|.
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~ 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELTK--ANDKIMIQEPVYSPFNSVVKNN-------------NRELIISPLQKLENGNYI 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSC--TTCEEEECSSCCTHHHHHHHHT-------------TCEEEECCCEECTTSCEE
T ss_pred CcHHHeEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCCHHHHHHHHHc-------------CCeEEeeeeeecCCCceE
Confidence 5577899999999999999997743 6689999999999877655433 2222333321 111222
Q ss_pred CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (480)
Q Consensus 234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~ 313 (480)
.| .++++++++ + +++|+++.+++++|.+. +++.+++|+++|++||+++|+||+|++|+++|.....+...
T Consensus 153 ~d----~~~l~~~l~----~-~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (391)
T 4dq6_A 153 MD----YEDIENKIK----D-VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI 222 (391)
T ss_dssp CC----HHHHHHHCT----T-EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ee----HHHHHHHhh----c-CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence 23 677888775 2 77787877788888764 77789999999999999999999999998877322222221
Q ss_pred -----CCCcceeeeccccc-cCccccccccCH-HHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669 314 -----GVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS 385 (480)
Q Consensus 314 -----~~~pDivt~sK~~g-~G~pig~v~~~~-~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~ 385 (480)
+....+.++||.+| +|+|+||+++++ ++++.+.... ...+++.|+++++++.++|+.. +++.++..+...
T Consensus 223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~ 300 (391)
T 4dq6_A 223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLE 300 (391)
T ss_dssp CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHH
Confidence 22344668999998 799999999885 8888776542 3456688999999999998753 333444444444
Q ss_pred HHHHHHHHhHHh-cCceeeEecccee-EEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCC
Q 011669 386 YLKERLTALKDK-YGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPP 458 (480)
Q Consensus 386 ~l~~~L~~l~~~-~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~ 458 (480)
..++.+.+..++ ++.+..+++.+.+ .|+++.... .....+.+.|+++ ||++.++..+ .+++||+++
T Consensus 301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 373 (391)
T 4dq6_A 301 SNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA 373 (391)
T ss_dssp HHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC
T ss_pred HHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc
Confidence 444444443333 3445445555554 457764311 1246788889988 9999987543 378999966
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 011669 459 LCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~ 478 (480)
++++++++++++|+++++
T Consensus 374 --~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 374 --CPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp --SCHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHhC
Confidence 699999999999999873
No 49
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.3e-33 Score=286.62 Aligned_cols=347 Identities=13% Similarity=0.115 Sum_probs=257.8
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHH
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALAS 152 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~ 152 (480)
++.|+.+.+++|.++| .+|+.||||.+|.+ +|| .+|.+.+++.+++.+..+.. ..+..+...++++++++
T Consensus 24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 99 (398)
T 3a2b_A 24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA 99 (398)
T ss_dssp CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence 3568899999999999 99999999998854 677 78999999999987753221 12345778899999999
Q ss_pred hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (480)
Q Consensus 153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (480)
.++. +++++++||++|++.+++.+.. +++.|++.+++|.+. ...+...+ ...+.+|.
T Consensus 100 ~~g~--~~v~~~~ggt~a~~~~~~~~~~--~gd~V~~~~p~~~~~-~~~~~~~g------------~~~~~v~~------ 156 (398)
T 3a2b_A 100 YVGK--EAAILFSTGFQSNLGPLSCLMG--RNDYILLDERDHASI-IDGSRLSF------------SKVIKYGH------ 156 (398)
T ss_dssp HHTC--SEEEEESSHHHHHHHHHHHSSC--TTCEEEEETTCCHHH-HHHHHHSS------------SEEEEECT------
T ss_pred HhCC--CcEEEECCHHHHHHHHHHHHhC--CCCEEEECCccCHHH-HHHHHHcC------------CceEEeCC------
Confidence 9854 6899999999999999987642 556777777766544 33333322 22222221
Q ss_pred CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc--cccCCCcccc
Q 011669 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGF 310 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf--gr~G~~~~~~ 310 (480)
.| .++++++++....+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ ++++ ..+ .
T Consensus 157 -~d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~ 225 (398)
T 3a2b_A 157 -NN----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A 225 (398)
T ss_dssp -TC----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred -CC----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence 13 578888887532226889999999999998875 999999999999999999999643 3444 211 2
Q ss_pred cccCCC--ccee--eecccccc-CccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 011669 311 EAHGVV--PDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHV 382 (480)
Q Consensus 311 ~~~~~~--pDiv--t~sK~~g~-G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~ 382 (480)
+.+++. +|++ ++||.++. | ||+++++++++.+.... +..+...++..++++.++|+.++. ++..+++++
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 302 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK 302 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 334443 5777 89999983 5 99999999988876532 345556677777777888876543 366777888
Q ss_pred HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEeC
Q 011669 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRITP 457 (480)
Q Consensus 383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p 457 (480)
+.+++.+.|+++ .+.. +++.|.++++.+. .......+.+.|+++||++.++..+ .+++||++
T Consensus 303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~ 369 (398)
T 3a2b_A 303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSL 369 (398)
T ss_dssp HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEEC
T ss_pred HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEE
Confidence 888888888775 2322 3456888888862 2334567889999999999987543 47899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 011669 458 PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 458 ~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+..++++++++++++|++++++
T Consensus 370 ~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 370 MATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999875
No 50
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=4.2e-35 Score=297.59 Aligned_cols=355 Identities=11% Similarity=0.023 Sum_probs=245.0
Q ss_pred EEEeeeccEEEeCCCC-------EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHh---
Q 011669 84 NVVDGKMQYLFDENGR-------RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK--- 153 (480)
Q Consensus 84 ~~~~g~G~~l~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~--- 153 (480)
+..+|+|+++||.+|+ +++||.++.. .++ .+|+|.+++.+++....+ .|... ..+++++++++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~-~~~l~~~la~~l~~ 81 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVL---GYTGP-TEEYKKTVKKWMKD 81 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCC---SSBCC-CHHHHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCC---CCCCC-cHHHHHHHHHHHHH
Confidence 4457999999999884 7899987763 355 689999999999875321 23222 44555555554
Q ss_pred -CC--CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cC
Q 011669 154 -MP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YR 229 (480)
Q Consensus 154 -~~--~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~ 229 (480)
++ .+.++|++++||++|++.+++.+.. ++++|++.+++||+....+... |...+.+|.. ..
T Consensus 82 ~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~ 146 (399)
T 1c7n_A 82 RHQWDIQTDWIINTAGVVPAVFNAVREFTK--PGDGVIIITPVYYPFFMAIKNQ-------------ERKIIECELLEKD 146 (399)
T ss_dssp HHCCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHTT-------------TCEEEECCCEEET
T ss_pred HhCCCCChhhEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHc-------------CCEEEecccccCC
Confidence 34 4567899999999999999997643 5688999999999977655432 2222222221 01
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (480)
Q Consensus 230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~ 309 (480)
+.|..| .+++++.++. .++++|++...++++|.+ .+++++++|.++|++||+++|+||+|++|+++|..+..
T Consensus 147 g~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 147 GYYTID----FQKLEKLSKD---KNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp TEEECC----HHHHHHHHTC---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred CCEEEc----HHHHHHHhcc---CCCcEEEEcCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence 112223 6788888862 367788877778888876 47789999999999999999999999999877632222
Q ss_pred ccc-----cCCCcceeeeccccc-cCccccccccC-HHHHHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHH
Q 011669 310 FEA-----HGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAH 381 (480)
Q Consensus 310 ~~~-----~~~~pDivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~ 381 (480)
+.. .+....+.++||.++ +|+|+||++++ +++++.+.......++ +.|+++++++.++|+.. +++.++.+
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~ 296 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCI 296 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHH
Confidence 222 233445668999999 89999999997 6788877654444444 57899999999988743 33444444
Q ss_pred HHHHHHHHHHHHhHHh-cCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEE
Q 011669 382 VVGSYLKERLTALKDK-YGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFR 454 (480)
Q Consensus 382 ~~~~~l~~~L~~l~~~-~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iR 454 (480)
+....+++.+.+..++ ++.+..+++.|. ++|+++.... .....+.+.|+ ++||++.++..+ .+++|
T Consensus 297 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 297 KVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 4444444444443333 444444555554 4577774210 01456788887 689999987543 37899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 455 ITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 455 i~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|+++. +++++++++++|.+++++
T Consensus 370 is~~~--~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 370 INLAA--PSSVIQESLERLNKALKD 392 (399)
T ss_dssp EECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEecc--CHHHHHHHHHHHHHHHHH
Confidence 99764 489999999999998864
No 51
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=9e-34 Score=283.65 Aligned_cols=343 Identities=15% Similarity=0.128 Sum_probs=238.8
Q ss_pred CeEEEeeeccEEEe-CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCE
Q 011669 82 PLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV 160 (480)
Q Consensus 82 p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~ 160 (480)
++.+.+|.+.+.++ .+|+++|||.+|... ++ .+|+|.+|+.+++... ..|+++...+++++|+++++.+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNINP--LG-IPKSFLNNIDEGIKNL----GVYPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCCT--TC-SCHHHHTTHHHHHHGG----GSCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCCC--CC-CCHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHhCCCcce
Confidence 45556665555444 489999999998754 34 6899999999998864 2345566789999999999877789
Q ss_pred EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHH
Q 011669 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (480)
Q Consensus 161 v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (480)
|+|++||++|++.+++.+ ++|++.+++||+........ |...+.+|....+.|+ .
T Consensus 81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~------~ 135 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKH-------------GVSVVFSYLDENMCID------Y 135 (361)
T ss_dssp EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCTTSCCC------H
T ss_pred EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHc-------------CCeEEEeecCcccCCC------H
Confidence 999999999999999865 78999999999876655433 2222222222222222 4
Q ss_pred HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc--
Q 011669 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-- 318 (480)
Q Consensus 241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD-- 318 (480)
+++++.++ + +++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|++.+ ........+..++
T Consensus 136 ~~l~~~l~---~--~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 136 EDIISKID---D--VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF 208 (361)
T ss_dssp HHHHHHTT---T--CSEEEEETTBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred HHHHHhcc---C--CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence 67777775 2 55666666678888764 77789999999999999999999999887652 2222233233333
Q ss_pred -eeeeccccc-cCccccccc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669 319 -IVTMAKGIG-NGIPLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395 (480)
Q Consensus 319 -ivt~sK~~g-~G~pig~v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~ 395 (480)
+.++||.++ +|+|+||++ .++++++.+.... .+++.|+++++++.++|+ ++++.++.++....+++.+.+..
T Consensus 209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l 283 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ--NPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFIEEL 283 (361)
T ss_dssp EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS--CTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999 799999998 8999998887644 467889999999998886 23444555555555555555555
Q ss_pred HhcCcee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHH
Q 011669 396 DKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 396 ~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l 470 (480)
++++.+. ..++.|.++++.+... ....+.+.|.++||++.++..+ .+++||+++ +++++++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~ 351 (361)
T 3ftb_A 284 NKIGFIKRVFSPHANFVLCRLENI---------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFL 351 (361)
T ss_dssp HHSSSEEEEECCSSSEEEEEESSS---------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHH
T ss_pred HhCCCCceecCCCCeEEEEEcCCC---------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHH
Confidence 5566666 6778899999887431 1467888899999999987543 478999954 888999999
Q ss_pred HHHHHHHhhC
Q 011669 471 DVMDYSLSKM 480 (480)
Q Consensus 471 ~~l~~~l~~~ 480 (480)
+.|+++.+.+
T Consensus 352 ~~l~~~~~~l 361 (361)
T 3ftb_A 352 RALKGVENNL 361 (361)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999887653
No 52
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=3.7e-34 Score=293.69 Aligned_cols=351 Identities=12% Similarity=0.051 Sum_probs=239.0
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHh----CC--CCCC-EEEEeCCHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN 171 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~----~~--~~~~-~v~f~~sGseA~ 171 (480)
.+|||..|.. .+| .+|.|.+++.+++.+..+....|.. ....+++++|+++ ++ .+.+ +|+|++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 5789988875 456 6899999999998763211112222 1234455555544 34 3566 899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC--------CCCCCChHHHHHHH
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--------GVFGADGEMYAKDV 243 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~--------~~~~~d~~~~~~~l 243 (480)
+.+++.+.. +++.|++.+++||+........ + ...+.+|.... ..|..| .++|
T Consensus 115 ~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~-g------------~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l 175 (429)
T 1yiz_A 115 YATIQGHVD--EGDEVIIIEPFFDCYEPMVKAA-G------------GIPRFIPLKPNKTGGTISSADWVLD----NNEL 175 (429)
T ss_dssp HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECBCCCSSSSEEGGGCBCC----HHHH
T ss_pred HHHHHHhcC--CCCEEEEcCCCchhHHHHHHHc-C------------CEEEEEeCCcccccccccccCcccC----HHHH
Confidence 999998743 5688999999999977654322 1 11111111111 023334 6778
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc----ccCCCcce
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDI 319 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~----~~~~~pDi 319 (480)
++.++ +++++|++++++|++|.+. +++++++|.++|++||+++|+||+|++|+++|.....+. ..+..+++
T Consensus 176 ~~~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 250 (429)
T 1yiz_A 176 EALFN----EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI 250 (429)
T ss_dssp HHHCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEE
T ss_pred HHHhc----cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEE
Confidence 77774 3688888888899999774 778999999999999999999999999987663222221 23455667
Q ss_pred eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHH
Q 011669 320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-----i~~~~~~~~~~~~~~~l~~~L~~ 393 (480)
.++||.++ +|+|+||+++++++++.+....+..+++.|+++++++.++|+. ...+++.+++++..+.+++.|.+
T Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (429)
T 1yiz_A 251 GSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS 330 (429)
T ss_dssp EEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 79999999 7999999999999998887655567889999999999999986 32244444444444444444433
Q ss_pred hHHhcCceeeEeccceeEEEEEecCCCcC----CCCHHHHHHHHHHHH-HcCceeeccCcC---------CCEEEEeCCC
Q 011669 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLK----TPAKAETLYIMDKMK-EMGVLVGKGGFY---------GNVFRITPPL 459 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~----~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~ 459 (480)
..+++++.......|+++++++....... .........+.+.|. ++||++.++..+ .+++||+++
T Consensus 331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~- 409 (429)
T 1yiz_A 331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF- 409 (429)
T ss_dssp HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC-
T ss_pred HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec-
Confidence 33333433223335778898875321000 000012456777776 789999887433 478999977
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 011669 460 CFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 460 ~~t~~~id~~l~~l~~~l~~ 479 (480)
.++++|++++++|++++++
T Consensus 410 -~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 410 -KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp -SCHHHHHHHHHHHHHHSCC
T ss_pred -CCHHHHHHHHHHHHHhccC
Confidence 4999999999999998764
No 53
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.4e-34 Score=291.72 Aligned_cols=346 Identities=15% Similarity=0.080 Sum_probs=242.4
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE 169 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGse 169 (480)
.|+.+|||.+|.+.. .||++|+|.+++.+++++..+... |.. ....++++++++++ + .+.++|++++||++
T Consensus 32 ~g~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 32 KGVKLISLAAGDPDP-ELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SSCCCEECCSCCCCT-TTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCCceEeCCCCCCCc-hhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 377899999988754 478999999999999987432222 332 23455666666554 5 34678999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
|++.+++.+.. +++.|++.+++||+........ |...+.+|.... +.| .+++++.++.
T Consensus 110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~---~~d----~~~l~~~l~~ 167 (407)
T 2zc0_A 110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQL-------------GAKIEGVPVDND---GMR----VDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-------------TCEEEEEEEETT---EEC----HHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEcccCCC---CCC----HHHHHHHHHh
Confidence 99999998753 5688999999999876543321 112211111100 012 5778877761
Q ss_pred c--CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc---CCCcceeeec
Q 011669 250 G--TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH---GVVPDIVTMA 323 (480)
Q Consensus 250 ~--~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~---~~~pDivt~s 323 (480)
. ...++++|+ ++.+++++|.+. +.+++++|.++|++||+++|+||+|+++.++|.....+..+ +...++.++|
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 0 112677774 556788888764 77889999999999999999999999987766322223222 3345667899
Q ss_pred cccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669 324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKY 398 (480)
Q Consensus 324 K~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-----~~~~~~~~~~~~~l~~~L~~l~~~~ 398 (480)
|.+++|+|+||+++++++++.+.......+++.++++++++.++|+.... +...++++++.+++.+.|++. .
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 323 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L 323 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 99999999999999999998887655556788899999999998875411 234455555666666666543 2
Q ss_pred Cceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC------CCEEEEeCCCCCCHHHHHHHH
Q 011669 399 GIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY------GNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 399 ~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l 470 (480)
+.+.. .+..|+++++.+... .....+.+.|.++ ||++.++..+ .+++||+++.. |++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~ 394 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEG--------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGI 394 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTT--------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHH
T ss_pred CCCEEecCCCcEEEEEEcCCC--------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence 22222 234577888887321 1145688888888 9999887433 47899998866 899999999
Q ss_pred HHHHHHHhh
Q 011669 471 DVMDYSLSK 479 (480)
Q Consensus 471 ~~l~~~l~~ 479 (480)
++|++++++
T Consensus 395 ~~l~~~l~~ 403 (407)
T 2zc0_A 395 KKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 54
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=6.8e-33 Score=279.85 Aligned_cols=344 Identities=16% Similarity=0.174 Sum_probs=252.4
Q ss_pred cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhccc--cccc---cCChHHHHHHHHHHH
Q 011669 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQH--STVL---YLNHAIADFAEALAS 152 (480)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~--~~~~---~~~~~~~~l~e~L~~ 152 (480)
++.|+.+.+++|.+++ .+|++||||.+|.. +| |.+|++.+++.+++.+..+ .... ...+...+++++|++
T Consensus 20 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 95 (384)
T 1bs0_A 20 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE 95 (384)
T ss_dssp CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred ccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence 4568889999999999 79999999998743 67 6899999999999987432 1122 235788999999999
Q ss_pred hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (480)
Q Consensus 153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (480)
+++. +++++++||++|+..+++.+.. +++.| ++...+|+.....+...+ ...+.+|.
T Consensus 96 ~~g~--~~~i~~~sGt~a~~~~~~~~~~--~gd~v-~~~~~~~~~~~~~~~~~g------------~~~~~~~~------ 152 (384)
T 1bs0_A 96 WLGY--SRALLFISGFAANQAVIAAMMA--KEDRI-AADRLSHASLLEAASLSP------------SQLRRFAH------ 152 (384)
T ss_dssp HHTC--SEEEEESCHHHHHHHHHHHHCC--TTCEE-EEETTCCHHHHHHHHTSS------------SEEEEECT------
T ss_pred HhCC--CcEEEeCCcHHHHHHHHHHhCC--CCcEE-EEcccccHHHHHHHHHcC------------CCEEEeCC------
Confidence 9964 4678889999999999986532 34445 445555665555444332 22222221
Q ss_pred CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcccc
Q 011669 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGF 310 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~~~ 310 (480)
.| .++++++++... +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+ +++| ..+ .
T Consensus 153 -~d----~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~-~ 220 (384)
T 1bs0_A 153 -ND----VTHLARLLASPC-PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS-C 220 (384)
T ss_dssp -TC----HHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred -CC----HHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-H
Confidence 23 578888887532 24789999999999999876 9999999999999999999996 32 4445 222 2
Q ss_pred cccCCCccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHH
Q 011669 311 EAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVV 383 (480)
Q Consensus 311 ~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~ 383 (480)
+.++..+|++ ++||.++. +.||+++++++++.+.... +..+.+.|++.++++.++|+.+.+ ++..++++++
T Consensus 221 ~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 298 (384)
T 1bs0_A 221 WLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL 298 (384)
T ss_dssp HHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3455668888 89999983 3399999999988776532 234457899999999999988763 3566777777
Q ss_pred HHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEeCC
Q 011669 384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRITPP 458 (480)
Q Consensus 384 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~ 458 (480)
.+++.+.|+++ +. ....+.|.++++.+. .......+.+.|.++||.+.++..+ .+++||+++
T Consensus 299 ~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~ 365 (384)
T 1bs0_A 299 ITRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT 365 (384)
T ss_dssp HHHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC
T ss_pred HHHHHHHHHhc----CC-cccCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc
Confidence 77777777664 22 122356778888773 1234567889999999999887533 268999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011669 459 LCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~ 476 (480)
..+|++++++++++|+++
T Consensus 366 ~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 366 AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 888999999999999874
No 55
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=1.4e-33 Score=287.64 Aligned_cols=338 Identities=16% Similarity=0.098 Sum_probs=248.7
Q ss_pred EeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhcccc---cc--ccCChHHHHHHHHHHHhCCCCCC
Q 011669 86 VDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHS---TV--LYLNHAIADFAEALASKMPGNLK 159 (480)
Q Consensus 86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~---~~--~~~~~~~~~l~e~L~~~~~~~~~ 159 (480)
.++.+.+++|.||++||||.++.+ +|+ .||+|.+|+.+++.+.... .. ....+...+++++|+++++. +
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~ 120 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--D 120 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--S
T ss_pred cCCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--C
Confidence 356788889999999999987633 344 5899999999999874221 11 12345667899999999854 4
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669 160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239 (480)
Q Consensus 160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~ 239 (480)
.+++++||++||+.+++.+.. +++.|++.++. |+.....+...+ ...+.++. .|
T Consensus 121 ~~i~~~sGt~a~~~~l~~~~~--~gd~Vl~~~~~-~~~~~~~~~~~g------------~~~~~~~~-------~d---- 174 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTICQ--PNTNVYIDFFA-HMSLWEGARYAN------------AQAHPFMH-------NN---- 174 (409)
T ss_dssp EEEEESCHHHHHHHHHHHHCC--TTCEEEEETTS-CHHHHHHHHHTT------------CEEEEECT-------TC----
T ss_pred eEEEecchHHHHHHHHHHhcC--CCCEEEECCCc-CHHHHHHHHHcC------------CeEEEecC-------CC----
Confidence 577889999999999986543 45566655555 454444443332 22222221 23
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCC--
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGV-- 315 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~-- 315 (480)
.++++++++.. ++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|++| ..+. ...++
T Consensus 175 ~~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~ 245 (409)
T 3kki_A 175 CDHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTR 245 (409)
T ss_dssp HHHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGG
T ss_pred HHHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCC
Confidence 67888888742 4689999999999998876 99999999999999999999998 77777 3322 34455
Q ss_pred Ccce--eeeccccccCccccccccCHHHHHhhcCCCcc--ccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 011669 316 VPDI--VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKER 390 (480)
Q Consensus 316 ~pDi--vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~ 390 (480)
.+|+ .|+||++++| .|++++++++++.+...... .+.+.++++++++.++|+.+++ +++.++++++++++++.
T Consensus 246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~ 323 (409)
T 3kki_A 246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIG 323 (409)
T ss_dssp GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566 5799999976 58999999888776543222 2334678999999999998765 46777888888888888
Q ss_pred HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHH
Q 011669 391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKED 465 (480)
Q Consensus 391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~ 465 (480)
|+++ .+. +.+.|.++++.+.. ......+.+.|+++||++.+... ..+++||+++..+|+++
T Consensus 324 L~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 324 LSQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp HHTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HHHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 8776 222 33678888888732 23456788999999999976432 24689999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 011669 466 ADYLVDVMDYSLSK 479 (480)
Q Consensus 466 id~~l~~l~~~l~~ 479 (480)
|++++++|++++++
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 56
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=9.6e-34 Score=292.45 Aligned_cols=349 Identities=10% Similarity=0.081 Sum_probs=241.4
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----CC-CCCEEEEeCCHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG-NLKVVFFTNSGTEAN 171 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~~-~~~~v~f~~sGseA~ 171 (480)
+..+|||.+|.+... ++.++++.+++.+++++.......|. .....+|+++|++++ +. +.++|++|+||++|+
T Consensus 75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 456899999987654 48899999999998876321111222 233455666666655 54 568999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG- 250 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~- 250 (480)
+.+++++.. +++.|++.+++|++........ |...+.+|.... +.| .++|+++++..
T Consensus 154 ~~~~~~l~~--~Gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~---g~d----~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVFLN--PGDIVVVEAPTYLAALQAFNFY-------------EPQYIQIPLDDE---GMK----VEILEEKLKELK 211 (448)
T ss_dssp HHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-------------CCEEEEEEEETT---EEC----HHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeccCCC---CCC----HHHHHHHHhhhh
Confidence 999998743 5689999999999977654332 122222221100 113 57788877610
Q ss_pred -CCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---cccccccCCCcceeeeccc
Q 011669 251 -TSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKG 325 (480)
Q Consensus 251 -~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~~~~~pDivt~sK~ 325 (480)
...++++|++.| .+|++|.+ .+.+++++|.++|++||+++|+||+|+++.+.|.. +..++..+..+++.+|||.
T Consensus 212 ~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 212 SQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp HTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred ccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence 113678876554 67778876 57889999999999999999999999998776632 2233334556778899999
Q ss_pred cccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh-cC-ceee
Q 011669 326 IGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YG-IIGD 403 (480)
Q Consensus 326 ~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~-~~-~~~~ 403 (480)
+++|+|+||+++++++++.+.......+++.|+++++++.++|+...-+++.+++++.....++.|.+..++ ++ .+..
T Consensus 291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW 370 (448)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999999999999999998887655556788899999999988874211233333333333333333333332 33 2333
Q ss_pred Ee-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 404 VR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 404 v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
+. ..|+++|+++... .....+.+.|.++||++.++..+ .+++||+++. .++++|++++++|.++
T Consensus 371 ~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~ 441 (448)
T 3aow_A 371 TKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAET 441 (448)
T ss_dssp CCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 33 3478888887321 11456888899999999987543 4789999875 4899999999999998
Q ss_pred Hhh
Q 011669 477 LSK 479 (480)
Q Consensus 477 l~~ 479 (480)
+++
T Consensus 442 l~~ 444 (448)
T 3aow_A 442 IKE 444 (448)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 57
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=3.8e-34 Score=290.59 Aligned_cols=343 Identities=13% Similarity=0.071 Sum_probs=239.7
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
++++|||.+|.+.. .||++|++.+++.+++++..+....|.. ....+++++|+++++.+.++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 45689999888754 4789999999999998764221123332 356788889998886556789999999999999999
Q ss_pred HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
.+.. ++++|++.+++||+....+.... ...+.+|....+ .| .+++++.++. .+++
T Consensus 110 ~~~~--~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~---~d----~~~l~~~l~~---~~~~ 164 (397)
T 2zyj_A 110 VFLD--EGSPVLLEAPSYMGAIQAFRLQG-------------PRFLTVPAGEEG---PD----LDALEEVLKR---ERPR 164 (397)
T ss_dssp HHCC--TTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETTE---EC----HHHHHHHHHH---CCCS
T ss_pred HhCC--CCCEEEEeCCCcHHHHHHHHHcC-------------CEEEecCcCCCC---CC----HHHHHHHHhh---cCCe
Confidence 7643 56889999999999776544321 111111110000 12 6788888864 1456
Q ss_pred EE-EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc------CCCcceeeeccccccC
Q 011669 257 GF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------GVVPDIVTMAKGIGNG 329 (480)
Q Consensus 257 ~v-i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~------~~~pDivt~sK~~g~G 329 (480)
+| ++...++++|.+ .+.+++++|.++|++||+++|+||+|++|+++|.....+..+ +....+.++||.+++|
T Consensus 165 ~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 66 455667888876 477899999999999999999999999998776322222222 2234456899999989
Q ss_pred ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcC-ceee-E
Q 011669 330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG-IIGD-V 404 (480)
Q Consensus 330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~-v 404 (480)
+|+||+++++++++.+.......+++.|+++++++.++|+.... +...+++++..+++.+.|++. ++ .+.. .
T Consensus 244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~ 320 (397)
T 2zyj_A 244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR 320 (397)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence 99999999999998887655556777899999998888864211 122233333333444443332 23 2332 2
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+..|+++++++... .....+.+.|.++||++.++..+ .+++||+++.. +++++++++++|+++++
T Consensus 321 ~~~g~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 321 PKGGMFVWMELPKG--------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK 391 (397)
T ss_dssp CSBSSEEEEECSTT--------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCC--------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence 35578888887421 11456888899999999986433 47899998864 89999999999999876
Q ss_pred h
Q 011669 479 K 479 (480)
Q Consensus 479 ~ 479 (480)
+
T Consensus 392 ~ 392 (397)
T 2zyj_A 392 G 392 (397)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=3.4e-33 Score=282.85 Aligned_cols=339 Identities=15% Similarity=0.105 Sum_probs=230.9
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGT 168 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGs 168 (480)
.+|++||||.+|.... + .+|+|.+++.+++.+... .|.. ....++++++++++ + .+.++|+||+||+
T Consensus 28 ~~g~~~i~l~~g~~~~--~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~ 101 (391)
T 3h14_A 28 EAGRRIIHMEVGQPGT--G-APRGAVEALAKSLETDAL---GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101 (391)
T ss_dssp HTTCCCEECCCSSCSS--C-SCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred hcCCCeEEccCCCCCC--C-CCHHHHHHHHHHHhcCCC---CCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence 4789999999988654 3 378999999998875321 1221 12345555555543 2 4567899999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
+|++.+++.+.. +++.|++.+++|++........ |...+.+|....+.|..| .+++++.
T Consensus 102 ~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~-- 160 (391)
T 3h14_A 102 GGFLLAFTALFD--SGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL-- 160 (391)
T ss_dssp HHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS--
T ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc--
Confidence 999999997643 6689999999999876544332 222222222222223223 3444332
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG- 327 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g- 327 (480)
++++|+++.++|++|.+. +.+.+++|.++|++||+++|+||+|++|.++|......+..+....+.++||.+|
T Consensus 161 -----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 234 (391)
T 3h14_A 161 -----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM 234 (391)
T ss_dssp -----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC
T ss_pred -----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC
Confidence 566777777788888775 7778999999999999999999999999887732222222233344458999999
Q ss_pred cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (480)
Q Consensus 328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 407 (480)
+|+|+||+++++++++.+.......+++.|+++++++.++|+ .++..++.++....+++.+.+..++++.....++.
T Consensus 235 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 311 (391)
T 3h14_A 235 TGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD 311 (391)
T ss_dssp TTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred ccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 899999999999999888766566788899999999988886 33334444444444444444444444544433444
Q ss_pred -ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 408 -GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 408 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
++++++++.... .....+.+.|+++ ||++.++..+ .+++||+++. +++++++++++|++++++
T Consensus 312 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 312 GAFYVYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp BTTEEEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 466777763211 1145677777765 9999987543 3589999764 899999999999998865
No 59
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=7.9e-34 Score=287.82 Aligned_cols=355 Identities=13% Similarity=0.072 Sum_probs=244.7
Q ss_pred CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCC---C
Q 011669 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG---N 157 (480)
Q Consensus 82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~---~ 157 (480)
|+....+.+.+++|.+|+++|||.+|.... + .+|.|.+|+.+++....+... .+..+...++++.+.+.++. +
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~--~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~ 89 (396)
T 3jtx_A 13 PFARLHEAMQGISAPEGMEAVPLHIGEPKH--P-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD 89 (396)
T ss_dssp HHHHHHHHTTTCCCCTTCCCEECSCCSCCS--C-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHhhhhccCCCeEEeCCcCCCC--C-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 344445677778899999999999988544 3 689999999998865432221 22345566777777766653 3
Q ss_pred CC-EEEEeCCHHHHHHHHHHHHHhhcC---CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCC
Q 011669 158 LK-VVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233 (480)
Q Consensus 158 ~~-~v~f~~sGseA~~~Alk~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 233 (480)
.+ +|++++||++|++.+++.+....+ ++.|++.+++||++......... .+..++.+ ...|.
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~ 155 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFN 155 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCC
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCc
Confidence 66 899999999999999998754211 26899999999987765443321 11222221 11222
Q ss_pred CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc--
Q 011669 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-- 311 (480)
Q Consensus 234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-- 311 (480)
.| .+++++.++. ++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|.++|...++..
T Consensus 156 ~d----~~~l~~~~~~----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 226 (396)
T 3jtx_A 156 PD----WRSISEEVWK----RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA 226 (396)
T ss_dssp CC----GGGSCHHHHH----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred cC----HHHHHHhhcc----CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence 23 4566666653 577777767788888775 677799999999999999999999999987762232221
Q ss_pred ------ccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011669 312 ------AHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG 384 (480)
Q Consensus 312 ------~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~ 384 (480)
..+..+++.+|||.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+. ++..++.++..
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~ 303 (396)
T 3jtx_A 227 AAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLY 303 (396)
T ss_dssp HHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred hhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 1455677789999987 6999999999999998887665667788999999999998863 33333333333
Q ss_pred HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----------CCEE
Q 011669 385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----------GNVF 453 (480)
Q Consensus 385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~i 453 (480)
...++.+.+...++..+ .....|+++|+++... ....+.+.|+ ++||++.++..+ .+++
T Consensus 304 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~i 373 (396)
T 3jtx_A 304 QEKFERVIPILQQVFDV-KLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYV 373 (396)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEE
T ss_pred HHHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeE
Confidence 33333333333332111 2233477888887321 1355777774 569999887432 3799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l 477 (480)
||+++ .+++++++++++|++++
T Consensus 374 Ris~~--~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 374 RIALV--ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHC
T ss_pred EEEEc--CCHHHHHHHHHHHHHHh
Confidence 99965 49999999999999875
No 60
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=3.9e-34 Score=290.97 Aligned_cols=359 Identities=12% Similarity=0.039 Sum_probs=243.9
Q ss_pred EEEeeeccEEEeCCCC---EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCCCC
Q 011669 84 NVVDGKMQYLFDENGR---RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN 157 (480)
Q Consensus 84 ~~~~g~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~~~ 157 (480)
++..++|.++++.+++ ++|||.+|... .++ .+|+|.+|+.+++.+.. +....+..+...++++.|++.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4566777777555555 59999987654 343 68999999999987532 2222344567788888888877643
Q ss_pred C---CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc----CC
Q 011669 158 L---KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY----RG 230 (480)
Q Consensus 158 ~---~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~----~~ 230 (480)
. ++|+|++||++|++.+++.+. .+++.|++.+++|++......... ...+.+|..+ ..
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~ 163 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAATV--ARGDKVAIVQPDYFANRKLVEFFE-------------GEMVPVQLDYVSADET 163 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTTC--CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEBCCCSSCCS
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEcCCcccchHHHHHHcC-------------CEEEEeecccccccCc
Confidence 2 689999999999999998653 367889999999998665544332 2222221111 11
Q ss_pred CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310 (480)
Q Consensus 231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~ 310 (480)
.+..| .+++++.++. ++++|+++..++++|.+. +.+++++|.++|++||+++|+||+|++|+++|..+..+
T Consensus 164 ~~~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~ 234 (407)
T 3nra_A 164 RAGLD----LTGLEEAFKA----GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHL 234 (407)
T ss_dssp SCCBC----HHHHHHHHHT----TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCG
T ss_pred CCCcC----HHHHHHHHhh----CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCh
Confidence 22223 6788888863 455666665688888764 78889999999999999999999999988777323233
Q ss_pred cc-----cCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011669 311 EA-----HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG 384 (480)
Q Consensus 311 ~~-----~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~ 384 (480)
.. .+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+. .+++.++..+..
T Consensus 235 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~ 312 (407)
T 3nra_A 235 RAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARH 312 (407)
T ss_dssp GGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHH
T ss_pred hhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHH
Confidence 22 233455668999999 8999999999999998887666667788889988888777752 223333333333
Q ss_pred HHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCC
Q 011669 385 SYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPP 458 (480)
Q Consensus 385 ~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~ 458 (480)
..+++.|.+..++++.+..+.+. |+++++.+.... .....+.+.|++ +||++.++..+ .+++||+++
T Consensus 313 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 313 QAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 34444444444444444443444 477777664311 114567787865 59999987543 478999976
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 011669 459 LCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~~ 479 (480)
.++++|++++++|++++++
T Consensus 386 --~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 386 --QDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp --SCHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHH
Confidence 4999999999999998865
No 61
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=1.5e-36 Score=307.87 Aligned_cols=355 Identities=12% Similarity=0.078 Sum_probs=246.1
Q ss_pred eEEEeeeccEEEeCCCC--EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C-
Q 011669 83 LNVVDGKMQYLFDENGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P- 155 (480)
Q Consensus 83 ~~~~~g~G~~l~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~- 155 (480)
++-.+|+|+++||.+|+ .+|||..|.. .++ .+|+|.+|+.+++.+..+ .|... ..++++++++++ +
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~-~~~l~~~la~~l~~~~g~ 85 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVY---GYTYA-SDELLQAVLDWEKSEHQY 85 (392)
Confidence 45677999999999999 9999988875 344 589999999998865322 22222 445555555543 3
Q ss_pred -CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCC
Q 011669 156 -GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFG 233 (480)
Q Consensus 156 -~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~ 233 (480)
.+.++|++++||++|++.+++.+.. ++++|++.+++||+.......... ..+.+|.. ..+.|.
T Consensus 86 ~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~~~ 150 (392)
T 3b1d_A 86 SFDKEDIVFVEGVVPAISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENGLFQ 150 (392)
Confidence 3467899999999999999997743 568899999999998765543321 11122110 001111
Q ss_pred CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC---Ccccc
Q 011669 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGF 310 (480)
Q Consensus 234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~---~~~~~ 310 (480)
.| .+++++.++. .++++|+++..++++|.+ ++++++++|+++|++||+++|+||+|++|+++|. .++.+
T Consensus 151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (392)
T 3b1d_A 151 ID----FEQLENDIVE---NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV 222 (392)
Confidence 12 4567766652 256777777788888876 5778999999999999999999999999987662 12222
Q ss_pred cc--cCCCcceeeeccccc-cCccccccccCH-HHHHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669 311 EA--HGVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS 385 (480)
Q Consensus 311 ~~--~~~~pDivt~sK~~g-~G~pig~v~~~~-~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~ 385 (480)
.. .+..+++.+|||.++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+.. +++.+++++...
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~ 300 (392)
T 3b1d_A 223 SPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLE 300 (392)
Confidence 22 455677889999999 899999999975 488887765544444 56899999999988732 344444544444
Q ss_pred HHHHHHHHhHHh-cCceeeEeccceeE-EEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCC
Q 011669 386 YLKERLTALKDK-YGIIGDVRGRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPP 458 (480)
Q Consensus 386 ~l~~~L~~l~~~-~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~ 458 (480)
..++.|.+..++ ++.+..+++.|.++ |+++... ......+.+.|+ ++||++.++..+ .+++||+
T Consensus 301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-- 371 (392)
T 3b1d_A 301 ENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN-- 371 (392)
Confidence 455555444433 34444556666655 5776321 012356778886 789999987543 3689999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 011669 459 LCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~ 478 (480)
+..+++++++++++|+++++
T Consensus 372 ~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 372 IAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 45578999999999998875
No 62
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=8.2e-33 Score=276.06 Aligned_cols=338 Identities=16% Similarity=0.097 Sum_probs=244.7
Q ss_pred eeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCH
Q 011669 88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSG 167 (480)
Q Consensus 88 g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sG 167 (480)
.+|.++++.+|+++|||.+|... ++ .+|+|.+++.+++.+. ..|+.+...+++++|+++++.+.++|++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNENP--LG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCCS--SC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCCC--CC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 36778889999999999988744 33 7899999999988753 34566778899999999998777899999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.+++.+.. +++.|++..++|++........ |...+.+|... .+..| .+++++.+
T Consensus 78 ~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~l 136 (354)
T 3ly1_A 78 SEGIRAAIEAYAS--LEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLD--NWAFD----IEGLKAAV 136 (354)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCT--TSCCC----HHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHHHh
Confidence 9999999997643 6789999999999876544432 22222222211 12234 67888888
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-c---ccc-CCCcceeee
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F---EAH-GVVPDIVTM 322 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~---~~~-~~~pDivt~ 322 (480)
++. .++++|+++.+++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.+ .... . +.. +....+.++
T Consensus 137 ~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 137 AAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDP-RFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCT-TCCCSHHHHHTTCSSEEEEEES
T ss_pred ccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhcccc-ccCCHHHHhhhcCCCEEEEeeC
Confidence 631 3678888888888888876 555667777777 6999999999999988766 2211 1 222 444556689
Q ss_pred ccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 323 sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
||.+| +|+|+||+++++++++.+..... .++.|+++++++.++|+..+. ++..++++++.+++++.|+++ +
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~- 284 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K- 284 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence 99999 89999999999999998876543 378899999999988863211 233444455555555555544 2
Q ss_pred eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+...++.|.++++++.. ....+.+.|.++||++. +.. ..+++||++. +++|+++++++|+++++
T Consensus 285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 33346678888888732 14678888999999988 432 2479999943 89999999999999886
Q ss_pred h
Q 011669 479 K 479 (480)
Q Consensus 479 ~ 479 (480)
+
T Consensus 351 ~ 351 (354)
T 3ly1_A 351 K 351 (354)
T ss_dssp T
T ss_pred h
Confidence 4
No 63
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-33 Score=282.50 Aligned_cols=336 Identities=15% Similarity=0.062 Sum_probs=235.3
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----CCC--CC-EEEEeCCH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN--LK-VVFFTNSG 167 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~~~--~~-~v~f~~sG 167 (480)
.+|+++|||.+|.. .+| .+|.|.+++.+++.+. ....|.. ....++++++++++ +.+ .+ +|+|++||
T Consensus 22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~ 96 (376)
T 2dou_A 22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDP--TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96 (376)
T ss_dssp HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCG--GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence 45888999998876 456 4899999999988652 1123444 35677888888776 543 24 89999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.+++.+.. ++++|++.+++||++...+.... ...+.+|. ...|..| .+++++.+
T Consensus 97 ~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~--~~~~~~d----~~~l~~~l 155 (376)
T 2dou_A 97 QEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVAS-------------LRTFLIPL--REDGLAD----LKAVPEGV 155 (376)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTT-------------CEEEEECB--CTTSSBC----GGGSCHHH
T ss_pred HHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcC-------------CEEEEeeC--CCCCCCC----HHHHHHhh
Confidence 9999999987643 56889999999999876554322 22222221 1122223 34566666
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccc---cCCCcceeeec
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA---HGVVPDIVTMA 323 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~---~~~~pDivt~s 323 (480)
+ +++++|+++..++++|.+ .+.+++++|.++|++||+++|+||+|++|.++| .... ... .+..+++.++|
T Consensus 156 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s 229 (376)
T 2dou_A 156 W----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS 229 (376)
T ss_dssp H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred c----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence 4 257788887667888876 477899999999999999999999999987766 2211 222 23445566899
Q ss_pred cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (480)
Q Consensus 324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 402 (480)
|.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+.. +++.++.++..+..++.+.+..+++ +.
T Consensus 230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 305 (376)
T 2dou_A 230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS 305 (376)
T ss_dssp HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 9998 79999999999999988876555567788999999998888642 3334444433334444444433333 22
Q ss_pred eEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 403 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
...+ .|+++++++... .....+.+.|+++||++.++..+ .+++||+++ .+++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 306 LLPPRATMYLWGRLPEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp ECCCCBSSEEEEECCTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred ccCCCeeEEEEEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 2333 466788887421 11356888899999999987543 478999976 38999999999998865
No 64
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=2.9e-33 Score=280.73 Aligned_cols=333 Identities=13% Similarity=0.096 Sum_probs=232.5
Q ss_pred eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Q 011669 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA 174 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~A 174 (480)
+.||+++|||.+|.. .+| .+|+|.+++.+++.+. ..|......+++++|+++++.+.++|+|++||++|++.+
T Consensus 20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTV 92 (364)
T ss_dssp TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence 567889999988874 467 7899999999988653 234445578899999999876677899999999999999
Q ss_pred HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254 (480)
Q Consensus 175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~ 254 (480)
++.+ .+ ++|++.+++||++...+.... ...+.+|......|.. ++++.+.+. .+
T Consensus 93 ~~~~---~g-d~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~-----l~~~~~~~~----~~ 146 (364)
T 1lc5_A 93 ASGL---KP-RRAMIVTPGFAEYGRALAQSG-------------CEIRRWSLREADGWQL-----TDAILEALT----PD 146 (364)
T ss_dssp HHHH---CC-SEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTCC-----CTTHHHHCC----TT
T ss_pred HHHc---CC-CeEEEeCCCcHHHHHHHHHcC-------------CeEEEEeCCcccccch-----hHHHHHhcc----CC
Confidence 9977 34 899999999999776554332 1111111111011110 122222221 24
Q ss_pred eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCccc
Q 011669 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPL 332 (480)
Q Consensus 255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pi 332 (480)
+++|++...++++|.+ .+.+++++|.++|++||+++|+||+|++|++.+...... +..+....+.++||.++ +|+|+
T Consensus 147 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 225 (364)
T 1lc5_A 147 LDCLFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL 225 (364)
T ss_dssp CCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC
T ss_pred CCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccce
Confidence 5555554447777876 477899999999999999999999999887654222221 22344455668999999 89999
Q ss_pred cccc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669 333 GAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (480)
Q Consensus 333 g~v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 411 (480)
||++ +++++++.+.... .+++.|+++++++.++|+. .++.++.++..+..++.+.+..++++.+...++.|.++
T Consensus 226 G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 300 (364)
T 1lc5_A 226 GYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYL 300 (364)
T ss_dssp EEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEE
T ss_pred EEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEE
Confidence 9999 9999988776533 4678899999998888763 33444444444444455544444454455556778888
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
++++..+ ...+.+.|.++||++.++..+ .+++||++ .+++++++++++|++++++
T Consensus 301 ~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 301 LLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC--
T ss_pred EEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhhc
Confidence 8877321 234778888999999987543 47899994 3789999999999987654
No 65
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=8.7e-34 Score=290.74 Aligned_cols=349 Identities=11% Similarity=0.045 Sum_probs=239.0
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C---CCCCEEEEeCCHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P---GNLKVVFFTNSGTE 169 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~---~~~~~v~f~~sGse 169 (480)
++.+|||.+|.+.. .||++|+|.+++.+++++.......|.. ....++++++++++ + .+.++|++++||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 56799999998754 4899999999999998763211112222 23344555555544 5 45678999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
|++.+++.+.. +++.|++.+++||++........ ...+.+|.... +.| .+++++.++.
T Consensus 121 al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---~~d----~~~l~~~l~~ 178 (425)
T 1vp4_A 121 ALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYL-------------ANFVVVPLEDD---GMD----LNVLERKLSE 178 (425)
T ss_dssp HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTT-------------CEEEEEEEETT---EEC----HHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcC-------------CEEEEeccCCC---CCC----HHHHHHHHHh
Confidence 99999997643 56889999999999776544321 11111111100 013 5677777763
Q ss_pred c----CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc---cCCCcceee
Q 011669 250 G----TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA---HGVVPDIVT 321 (480)
Q Consensus 250 ~----~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~---~~~~pDivt 321 (480)
. ...++++|+ +...++++|.+ .+.+++++|.++|++||+++|+||+|++|.++|.....+.. .+....+.+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 179 FDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp HHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence 1 012677874 55577788876 47789999999999999999999999998876632222222 233344568
Q ss_pred eccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHh
Q 011669 322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDK 397 (480)
Q Consensus 322 ~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~ 397 (480)
+||.+++|+|+||+++++++++.+.......+++.|+++++++.++|+....+ ...+++++..+++.+.|++....
T Consensus 258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 337 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 337 (425)
T ss_dssp STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999888876555567788999999999999864212 33444555556666665553211
Q ss_pred cCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHH
Q 011669 398 YGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 398 ~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l 470 (480)
++.+..+ +..|+++|+++.... ....+.+.|.++||++.++..+ .+++||+++.. +++++++++
T Consensus 338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l 408 (425)
T 1vp4_A 338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGI 408 (425)
T ss_dssp STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHH
T ss_pred CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence 1123332 455788888874311 1235778888889999987533 47899998764 899999999
Q ss_pred HHHHHHHhh
Q 011669 471 DVMDYSLSK 479 (480)
Q Consensus 471 ~~l~~~l~~ 479 (480)
++|++++++
T Consensus 409 ~~l~~~l~~ 417 (425)
T 1vp4_A 409 KRLREVVLE 417 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 66
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-33 Score=286.65 Aligned_cols=345 Identities=13% Similarity=0.092 Sum_probs=236.9
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccc-cccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HST-VLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN 171 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~-~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~ 171 (480)
.|+.+|||..|.+. ++ .+|.|.+++.+++++.. +.. ..+..+...++++.+.+.++ .+.++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFFS--YS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSCS--SC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 45679999998764 34 68999999999887521 111 11122334445555444443 2346899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC--------cCCCCCCChHHHHHHH
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--------YRGVFGADGEMYAKDV 243 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~--------~~~~~~~d~~~~~~~l 243 (480)
+.+++.+.. ++++|++.+++||++...+..... . +..++.... ....|..| .++|
T Consensus 132 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~-~----------~~~v~~~~~~~~~~~~~~~~~~~~d----~~~l 194 (447)
T 3b46_A 132 LSCLMGLLN--AGDEVIVFEPFFDQYIPNIELCGG-K----------VVYVPINPPKELDQRNTRGEEWTID----FEQF 194 (447)
T ss_dssp HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEEEECCGGGGTSCBCSTTSEEC----HHHH
T ss_pred HHHHHHHcC--CCCEEEEeCCCchhHHHHHHHcCC-E----------EEEEeCCCccccccccccccCcccC----HHHH
Confidence 999997743 678999999999987765433221 1 111111000 00122233 5677
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Ccccc--cccCCCcce
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGF--EAHGVVPDI 319 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~--~~~~~~pDi 319 (480)
++.++ +++++|++++.+|++|.+. +++++++|.++|++||+++|+||+|++|.++|. .+..+ +..+..+++
T Consensus 195 ~~~l~----~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i 269 (447)
T 3b46_A 195 EKAIT----SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTV 269 (447)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEE
T ss_pred HHhhc----cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEE
Confidence 76664 3688888888889899774 688999999999999999999999999887762 12222 124667778
Q ss_pred eeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHH
Q 011669 320 VTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 320 vt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~----~~~~~~~~~~~l~~~L~~ 393 (480)
.++||.++ +|+|+||+++ ++++++.+....+..+++.++++++++.++|+....++ ..++++++.+++.+.|++
T Consensus 270 ~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 270 GSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999 7999999999 99999888765556788899999999999998764344 344455555555555555
Q ss_pred hHHhcCceeeEeccceeEEEEEecCCCcCCCC----------HHHHHHHHHHHH-HcCceeeccCcC---------CCEE
Q 011669 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----------KAETLYIMDKMK-EMGVLVGKGGFY---------GNVF 453 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----------~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~i 453 (480)
+ ++....+..|+++|+++.... .|. ......+.+.|. ++||++.++..+ .+++
T Consensus 350 ~----g~~~~~~~~g~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~i 422 (447)
T 3b46_A 350 L----GLPYTAPEGTYFVLVDFSKVK---IPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLL 422 (447)
T ss_dssp H----TCCEECCSBSSEEEEECTTCC---CCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEE
T ss_pred C----CCeecCCCeeEEEEEeccccc---CccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEE
Confidence 3 322223455788888874311 010 113456777776 689999987533 5789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHH
Q 011669 454 RITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~ 475 (480)
||+++ .++++|++++++|++
T Consensus 423 Rls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 423 RFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp EEECC--SCHHHHHHHHHHGGG
T ss_pred EEEEe--CCHHHHHHHHHHHHH
Confidence 99976 589999999999987
No 67
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=3.3e-32 Score=273.16 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=243.4
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk 176 (480)
.+.+|||.+|... + ..+|+|.+++.+++.... ...|.++...+++++|+++++. +.++|+|++||++|++.+++
T Consensus 29 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAMENP--Y-RLPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSCCC--C-CCCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCCCC--C-CCCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 3679999988733 3 478999999999987531 2345556678999999999876 56799999999999999998
Q ss_pred HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
.+.. ++++|++.+++|+++....... |...+.+|... .|..| .+++++.++.. +++
T Consensus 104 ~~~~--~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~~---~~~ 159 (367)
T 3euc_A 104 AAAR--PGAKVMAPVPGFVMYAMSAQFA-------------GLEFVGVPLRA--DFTLD----RGAMLAAMAEH---QPA 159 (367)
T ss_dssp HTCC--TTCEEEEEESCSCCSCHHHHTT-------------TCEEEEEECCT--TSCCC----HHHHHHHHHHH---CCS
T ss_pred HHcC--CCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEecCCC--CCCCC----HHHHHHHhhcc---CCC
Confidence 7633 5688999999999876654332 22222222111 22234 67888888642 567
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 334 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~ 334 (480)
+|+++.++|++|.+. +.+.+++|.++|++| |+++|+||+|++|+..+ .....+..+..+++.++||...+|+|+||
T Consensus 160 ~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~ 237 (367)
T 3euc_A 160 IVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY 237 (367)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred EEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence 888888888888775 677899999999999 99999999999987554 33334445556777799999337899999
Q ss_pred cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (480)
Q Consensus 335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 414 (480)
+++++++++.+.... .+++.|+++++++.++|+. .++.++..+....+++.+.+..++++.+...++.|.++++.
T Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 312 (367)
T 3euc_A 238 VAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR 312 (367)
T ss_dssp EEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred eeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence 999999998887543 4678899999999999874 33333333334444444444444454455566778888887
Q ss_pred EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+. ....+.+.|.++||++.++..+ .+++||+++ +++|+++++++|+++++
T Consensus 313 ~~-----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 313 VP-----------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CS-----------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CC-----------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 63 1466888899999999987542 479999944 99999999999999875
No 68
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=9.9e-33 Score=277.76 Aligned_cols=334 Identities=11% Similarity=-0.003 Sum_probs=234.1
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANE 172 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~~ 172 (480)
.+| ++|||.+|... ++ .+|.|.+|+.+++....+... .+..+...++++.+.+.++. +.++|+|++||++|++
T Consensus 21 ~~g-~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGEPQ--FE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCCCC--SC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCCCC--CC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 467 89999988754 44 689999999988744322111 12234455566666555454 5688999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (480)
Q Consensus 173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (480)
.+++.+...++++.|++.+++||++........ ...+.+|......+. . ++++.+..
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------~-~l~~~~~~--- 153 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK-------------AKSLLMPLTKENDFT------P-SLNEKELQ--- 153 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTSC------C-CCCHHHHH---
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC-------------CEEEEcccCCCCCcc------h-hHHhhhcc---
Confidence 999987653337899999999998776544332 222222211111111 1 34444432
Q ss_pred CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc---------ccCCCcceeeec
Q 011669 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE---------AHGVVPDIVTMA 323 (480)
Q Consensus 253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~---------~~~~~pDivt~s 323 (480)
++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|++|.++| ...... ..+..+.+.++|
T Consensus 154 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 154 -EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp -HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred -CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence 456677666688888765 77789999999999999999999999998877 333321 345566677999
Q ss_pred cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (480)
Q Consensus 324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 402 (480)
|.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+. ++..++.++.....++.+.+..+ ++ .
T Consensus 231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~ 304 (376)
T 3ezs_A 231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L 304 (376)
T ss_dssp TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence 9997 7999999999999999887666667888999999999998873 23334444443444444433322 22 2
Q ss_pred eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
.+..|+++|+++. ....+.+.|++ +||++.++..+ .+++||+++ .|++++++++++|++
T Consensus 305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIET 370 (376)
T ss_dssp -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 5567888888873 14567888887 89999987433 479999966 499999999999999
Q ss_pred HHhh
Q 011669 476 SLSK 479 (480)
Q Consensus 476 ~l~~ 479 (480)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9875
No 69
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.2e-33 Score=282.21 Aligned_cols=343 Identities=13% Similarity=0.080 Sum_probs=233.0
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----CC--CC-CEEEEeCCH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG--NL-KVVFFTNSG 167 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~~--~~-~~v~f~~sG 167 (480)
.+|+++|||.+|.. .+| .+|.|.+++.+++.+.. ...|. .....++++.+++++ +. +. ++|++++||
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~ 108 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQRED--THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS 108 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCCh
Confidence 57889999998875 456 78999999998876531 11222 233455666666555 42 44 589999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.+++.+. .+++.|++.+++||+....+.... ...+.+|.... ++-....+++++.+
T Consensus 109 ~~a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~i 169 (412)
T 2x5d_A 109 KEGLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAG-------------AQVRSVPLVPG----IDFFNELERAIRES 169 (412)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHT-------------CEEEEEECSTT----SCHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCCc----cCCCCCHHHHHHhc
Confidence 999999999764 256889999999999776554322 22222221100 01111245666665
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeec
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA 323 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~s 323 (480)
+ .++++|++...+|++|.+ .+.+++++|.++|++||+++|+||+|++|.++|.....+.. .+..+.+.++|
T Consensus 170 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s 244 (412)
T 2x5d_A 170 I----PKPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLS 244 (412)
T ss_dssp E----SCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC
T ss_pred c----cCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCc
Confidence 4 256666665557778876 47789999999999999999999999998776632222222 23444566899
Q ss_pred cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
|.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+..++ +...++++++.+++.+.|+++ .+.
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~- 321 (412)
T 2x5d_A 245 KSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM- 321 (412)
T ss_dssp -CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC-
T ss_pred cccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE-
Confidence 9999 8999999999999998887655556788999999999999874322 344555666666776666664 222
Q ss_pred eeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669 401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD 474 (480)
Q Consensus 401 ~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~ 474 (480)
.+++. |+++|+++..... ......+.+.|++ +||++.++..+ .+++||+++. +++++++++++|.
T Consensus 322 --~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~ 392 (412)
T 2x5d_A 322 --VENPKASMYVWAKIPEPYA-----HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIK 392 (412)
T ss_dssp --CCCCSBSSEEEEECCTTTG-----GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred --ecCCCeeeEEEEEcCCccC-----CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 23344 6678887732100 0014567777765 69999987543 4789999775 8999999999999
Q ss_pred HHHhh
Q 011669 475 YSLSK 479 (480)
Q Consensus 475 ~~l~~ 479 (480)
+++++
T Consensus 393 ~~l~~ 397 (412)
T 2x5d_A 393 AMFRA 397 (412)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 70
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=6.1e-32 Score=276.33 Aligned_cols=355 Identities=11% Similarity=0.056 Sum_probs=235.6
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--c--cccccCChHHHHHHHHHHHhCC--CCC-CEEEEeCCHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--H--STVLYLNHAIADFAEALASKMP--GNL-KVVFFTNSGTEAN 171 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~--~~~~~~~~~~~~l~e~L~~~~~--~~~-~~v~f~~sGseA~ 171 (480)
..+|||..|.... ..+|.|.+++.+++.+.. + ....+..+....+++.+.+.++ .+. ++|+|++||++|+
T Consensus 28 ~~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFPDF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSCSS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCCCC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 3578998887543 378999999999988632 1 1111122344455555554443 233 5799999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCC-----C---cCCCCCCChHHHHHHH
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-----P---YRGVFGADGEMYAKDV 243 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-----~---~~~~~~~d~~~~~~~l 243 (480)
+.+++.+. .+++.|++.+++||++......... . +..++... . ....|..| .+++
T Consensus 105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~~G~~~~~~~~~~d----~~~l 167 (422)
T 3fvs_A 105 FTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGG-R----------PVFVSLKPGPIQNGELGSSSNWQLD----PMEL 167 (422)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECBCCCCCSSSCCBGGGSBCC----HHHH
T ss_pred HHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCC-E----------EEEEecccccccccccccccCCCCC----HHHH
Confidence 99999763 3678899999999997655443321 1 11111110 0 00112223 5667
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcce
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDI 319 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDi 319 (480)
++.++ .++++|++++++|++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+... +..+++
T Consensus 168 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 168 AGKFT----SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HhhcC----CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence 66664 3688888888899999875 78889999999999999999999999998877322222222 333556
Q ss_pred eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHH
Q 011669 320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i-----~~~~~~~~~~~~~~~l~~~L~~ 393 (480)
.++||.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+.. ..+++.++.++..+..++.|.+
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR 322 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 89999999999999988876556678899999999999998741 1223333344433344444444
Q ss_pred hHHhcCceeeEeccceeEEEEEecCCCcC-----CCCHHHHHHHHHHH-HHcCceeeccCcC---------CCEEEEeCC
Q 011669 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TPAKAETLYIMDKM-KEMGVLVGKGGFY---------GNVFRITPP 458 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~~~~~~~~~~~~l-~~~Gv~v~~~~~~---------~~~iRi~p~ 458 (480)
...++++.......|+++|+++....... ........++++.+ .++||++.+|..+ .+++||+
T Consensus 323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis-- 400 (422)
T 3fvs_A 323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC-- 400 (422)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--
T ss_pred HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE--
Confidence 33344443344566788888874310000 00000023455654 4679999987543 4789999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhC
Q 011669 459 LCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+..+++++++++++|+++++++
T Consensus 401 ~~~~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 401 FVKDEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCC
T ss_pred ecCCHHHHHHHHHHHHHHHhhC
Confidence 4559999999999999998764
No 71
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=4.3e-32 Score=278.37 Aligned_cols=349 Identities=14% Similarity=0.095 Sum_probs=242.1
Q ss_pred eCCCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCC-----CCCCEEEEeCCH
Q 011669 95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSG 167 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~-----~~~~~v~f~~sG 167 (480)
+.+|+.+|||..|.+.. +-.+.+|.|.+|+.+++.+.. ...| ......++++++++++. .+.++|++++||
T Consensus 50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 45688999999988543 123578999999999988642 1233 34556788888888876 456789999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.+++.+.. +++.|++.+++|+++...+.... .....+|......|..| .+++++.+
T Consensus 128 t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l 188 (427)
T 3dyd_A 128 SQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMG-------------IEVKLYNLLPEKSWEID----LKQLEYLI 188 (427)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHHSSC
T ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHh
Confidence 9999999998754 67899999999998765544332 22222211111112223 56666666
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eecc
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAK 324 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK 324 (480)
+ .++++|++...+|++|.+ ++++++++|.++|++||+++|+||+|++|+++|..+..+...+..++++ +|||
T Consensus 189 ~----~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK 263 (427)
T 3dyd_A 189 D----EKTACLIVNNPSNPCGSV-FSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAK 263 (427)
T ss_dssp C----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTT
T ss_pred c----cCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccc
Confidence 4 246666666668888876 4888899999999999999999999999998874333444455555555 8999
Q ss_pred ccc-cCccccccccC-------HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 011669 325 GIG-NGIPLGAVVTT-------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 325 ~~g-~G~pig~v~~~-------~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~ 393 (480)
.++ +|+|+||++++ +++++.+.... ..+++.|+++++++.++|+....+ +..++++++.+++.+.|+
T Consensus 264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~- 341 (427)
T 3dyd_A 264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA- 341 (427)
T ss_dssp TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCcCcceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 987 69999999987 46776665432 236889999999999999853322 233444444445544444
Q ss_pred hHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHHHHHHH
Q 011669 394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKEDADYL 469 (480)
Q Consensus 394 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~ 469 (480)
+++.+..+ +..|+++++.+..... |.......+++.|+ ++||++.++..+ .+++||+ +.+++++++++
T Consensus 342 ---~~~g~~~~~p~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis--~~~~~e~i~~~ 413 (427)
T 3dyd_A 342 ---AIPGLRPVRPSGAMYLMVGIEMEHF---PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVV--ITVPEVMMLEA 413 (427)
T ss_dssp ---HSTTEEEECCSBTTEEEEEECGGGC---TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--SCSCHHHHHHH
T ss_pred ---cCCCceecCCCeeEEEEEecCHhhc---CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEE--ECCCHHHHHHH
Confidence 34445444 4446777877742210 11112355677664 889999987543 4799999 45899999999
Q ss_pred HHHHHHHHhh
Q 011669 470 VDVMDYSLSK 479 (480)
Q Consensus 470 l~~l~~~l~~ 479 (480)
+++|++++++
T Consensus 414 l~~l~~~l~~ 423 (427)
T 3dyd_A 414 CSRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 72
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-31 Score=268.73 Aligned_cols=326 Identities=13% Similarity=0.073 Sum_probs=230.5
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ 177 (480)
++.+|||.+|... ++ .+|+|.+++.+++... ..|+++...+++++++++++.+.++|+|++||++|++.+++.
T Consensus 31 ~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~ 103 (363)
T 3ffh_A 31 LTKITKLSSNENP--LG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV 103 (363)
T ss_dssp CSCCEECSSCSCT--TC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceEEccCCCCC--CC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence 3578999988654 44 7899999998866532 345566678999999999987778999999999999999997
Q ss_pred HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (480)
Q Consensus 178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~ 257 (480)
+. .++++|++.+++|+++......... .+..++... .+..| .+++++.++ +++++
T Consensus 104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~----~~~~~ 158 (363)
T 3ffh_A 104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLLQ----DGEHD----LEGMLNAID----EKTTI 158 (363)
T ss_dssp HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECCT----TSCCC----HHHHHHHCC----TTEEE
T ss_pred Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCC----CCCcC----HHHHHHhcc----cCCCE
Confidence 63 3678999999999986655443321 122222221 12223 677877774 36888
Q ss_pred EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc----eeeeccccc-cCccc
Q 011669 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG-NGIPL 332 (480)
Q Consensus 258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD----ivt~sK~~g-~G~pi 332 (480)
|+++++++++|.+.+ .+.+++|.+.|++ |+++|+||+|++|++ | ...........+| +.++||.+| +|+|+
T Consensus 159 v~~~~p~nptG~~~~-~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 234 (363)
T 3ffh_A 159 VWICNPNNPTGNYIE-LADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV 234 (363)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred EEEeCCCCCcCCCcC-HHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence 888888899998764 4445555555544 999999999999877 5 3333222211223 558999999 89999
Q ss_pred cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412 (480)
Q Consensus 333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~ 412 (480)
||+++++++++.+.... .+++.|+++++++.++|+. .++.++.++....+++.+.+..+++..+...++.|.+++
T Consensus 235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 309 (363)
T 3ffh_A 235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL 309 (363)
T ss_dssp EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence 99999999998887644 3788999999999999873 233444444444444444444444333445667788888
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
+++.. ....+.+.|.++||++.++..+ .+++||+++ +++|+++++++|++++
T Consensus 310 ~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 310 IDLGI----------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EECSS----------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred EECCC----------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 87732 1467888999999999987544 479999965 9999999999998763
No 73
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-32 Score=279.33 Aligned_cols=338 Identities=13% Similarity=0.065 Sum_probs=232.2
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----CCC---CCEEEEeCCH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN---LKVVFFTNSG 167 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~~~---~~~v~f~~sG 167 (480)
..|+++|||.+|.+ .+| .+|.|.+++.+++++.. ...|.. ....++++++++++ +.+ .++|++++||
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~ 118 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT 118 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCc
Confidence 35788999998886 456 58999999999875421 112222 23455556655554 543 2689999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.+++.+.. +++.|++.+++||++...+..... .+..++... ..|..| .++|++.+
T Consensus 119 ~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l 178 (404)
T 2o1b_A 119 KNGLVAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQI 178 (404)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHH
T ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhh
Confidence 9999999997643 568899999999998765543221 111222111 122223 35566666
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cc---cCCCcceeeec
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA---HGVVPDIVTMA 323 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~---~~~~pDivt~s 323 (480)
+ .++++|+++..++++|.+ .+.+++++|.++|++||+++|+||+|++|.++| ..... .. .+..+.+.++|
T Consensus 179 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~s 252 (404)
T 2o1b_A 179 I----DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLS 252 (404)
T ss_dssp H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEEST
T ss_pred c----cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecc
Confidence 4 257888887677888876 478899999999999999999999999987665 22211 11 23345566899
Q ss_pred cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
|.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++ ++..++++++.+++.+.|+++ +
T Consensus 253 K~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g- 327 (404)
T 2o1b_A 253 KGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----D- 327 (404)
T ss_dssp TTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-
T ss_pred hhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence 9998 8999999999999998887655556788999999999998875311 223334444455555555443 3
Q ss_pred eeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669 401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD 474 (480)
Q Consensus 401 ~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~ 474 (480)
+....+. |+++|+++... .....+.+.|+ ++||++.++..+ .+++||+++. +++++++++++|+
T Consensus 328 ~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~ 397 (404)
T 2o1b_A 328 LPFVHAKGGIYVWLETPPG--------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLT 397 (404)
T ss_dssp CCEECCCBSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHH
T ss_pred CeecCCCcceEEEEeCCCC--------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHH
Confidence 2223333 56688887421 11356777776 579999987543 4689999774 7899999999999
Q ss_pred HHHhh
Q 011669 475 YSLSK 479 (480)
Q Consensus 475 ~~l~~ 479 (480)
+++++
T Consensus 398 ~~l~~ 402 (404)
T 2o1b_A 398 ELAYL 402 (404)
T ss_dssp GGGGG
T ss_pred HHHHh
Confidence 88764
No 74
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=2.1e-32 Score=281.20 Aligned_cols=355 Identities=15% Similarity=0.097 Sum_probs=237.2
Q ss_pred EeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc---------cccC-ChHHHHHHHHHHHhCC--------
Q 011669 94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---------VLYL-NHAIADFAEALASKMP-------- 155 (480)
Q Consensus 94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~---------~~~~-~~~~~~l~e~L~~~~~-------- 155 (480)
||.++|.+.++..|...+.++ ++.+.+++.++.....+.. ..|. .....+|+++|++++.
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 788998888888888777665 6889998888766443320 1232 2334567777766654
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCC
Q 011669 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235 (480)
Q Consensus 156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d 235 (480)
.+.++|+|++||++||+.+++.++. +++.|++.+++|++......... |...+.++......|..|
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d 174 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT 174 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence 3467899999999999999998754 66889999999987765443222 222233322222233334
Q ss_pred hHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669 236 GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (480)
Q Consensus 236 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~ 313 (480)
.++|+++++.. ...++++|+++++++++|.+. +.+.+++|.++|++||+++|+||+|++++++|..+......
T Consensus 175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 249 (435)
T 3piu_A 175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV 249 (435)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence 56777777531 123688888888888888764 67789999999999999999999999987777322222111
Q ss_pred C----CC-----cc----eeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-----
Q 011669 314 G----VV-----PD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----- 373 (480)
Q Consensus 314 ~----~~-----pD----ivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~----- 373 (480)
. +. +| +.||||++| +|+|+||+++ ++++.+.+.. ...+++.++++++++.++|+....
T Consensus 250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence 1 11 33 558999999 8999999999 5667766653 234566788888888888763221
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC--
Q 011669 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY-- 449 (480)
Q Consensus 374 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~-- 449 (480)
++..+++++..+++++.|++ .+ +..+.+. |+++|+++..... .+.......+++.|+++ ||++.++..+
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQK----SG-ISCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TT-CEECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC-CcccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 12223333444444444433 33 2333444 4888988854211 11222355678888777 9999986543
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 --GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 --~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||+++.. |++++++++++|++++++
T Consensus 401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 47899998655 999999999999998864
No 75
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=5e-32 Score=274.01 Aligned_cols=338 Identities=14% Similarity=0.151 Sum_probs=232.0
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCE-EEEeCCHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKV-VFFTNSGTEA 170 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~-v~f~~sGseA 170 (480)
..++||.+|.. .+| .+|+|.+++.+++++... .|.. ....++++++++++ + .+.++ |++++||++|
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLT---HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA 99 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence 35789988875 355 689999999999876421 1221 12344555555444 4 34567 9999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (480)
Q Consensus 171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (480)
++.+++.+. .+++.|++.+++||+........ |...+.+|......|..| .+++++.++
T Consensus 100 ~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~-- 158 (389)
T 1gd9_A 100 FLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILA-------------GGKPVEVPTYEEDEFRLN----VDELKKYVT-- 158 (389)
T ss_dssp HHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHH-------------TCEEEEEECCGGGTTCCC----HHHHHHHCC--
T ss_pred HHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHC-------------CCEEEEeccCCccCCCCC----HHHHHHhcC--
Confidence 999998653 35689999999999976544322 122222221111122223 577887775
Q ss_pred CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CC-Ccc--eeeecccc
Q 011669 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV-VPD--IVTMAKGI 326 (480)
Q Consensus 251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~-~pD--ivt~sK~~ 326 (480)
+++++|+++++++++|.+ .+++.+++|.++|++||+++|+||+|+++.++|.....+..+ +. ..| +.++||.+
T Consensus 159 --~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 235 (389)
T 1gd9_A 159 --DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF 235 (389)
T ss_dssp --TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred --cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc
Confidence 267888888888888876 477899999999999999999999999988766213233222 21 234 45799999
Q ss_pred c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669 327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGII 401 (480)
Q Consensus 327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 401 (480)
+ +|+|+||+++++++++.+.......+++.|+++++++.++|+.... ++..++++++.+++.+.|+++ .+...
T Consensus 236 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 313 (389)
T 1gd9_A 236 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTV 313 (389)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCC
T ss_pred CCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence 8 7999999999999998887655566788899999999998875433 233444555555555555553 22221
Q ss_pred eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
....|+++++++.... .....+.+.|+ ++||++.++..+ .+++||+++ .+++++++++++|+++
T Consensus 314 --~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 314 --KPKGAFYIFPRIRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERV 382 (389)
T ss_dssp --CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred --CCCeeeEEEEeccCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 2233666777663210 11456788887 899999987543 468999976 3999999999999998
Q ss_pred Hhh
Q 011669 477 LSK 479 (480)
Q Consensus 477 l~~ 479 (480)
+++
T Consensus 383 ~~~ 385 (389)
T 1gd9_A 383 LKE 385 (389)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 76
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=7e-32 Score=272.82 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=236.4
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc--cccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST--VLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE 172 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~--~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~ 172 (480)
+|+.++||.+|.+ .+| .+|.+.+++.+++++..... ..+..+...++++.+.+.++ .+.++|++++||++|++
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6889999998876 345 57999999999886532111 11122334444444444333 34578999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (480)
Q Consensus 173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (480)
.+++.+. .+++.|++.+++||+........ |...+.+|......|..| .+++++.++
T Consensus 105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---- 161 (388)
T 1j32_A 105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---- 161 (388)
T ss_dssp HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC----
T ss_pred HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC----
Confidence 9999774 36688999999999876543221 222222222111123233 577887774
Q ss_pred CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---cccccc--cCCCcceeeeccccc
Q 011669 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA--HGVVPDIVTMAKGIG 327 (480)
Q Consensus 253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~--~~~~pDivt~sK~~g 327 (480)
+++++|+++++++++|.+. +++.+++|.++|++||+++|+||+|++|.+.|.. +..+.. .+..+++.++||.++
T Consensus 162 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 240 (388)
T 1j32_A 162 PKTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence 2678888888888888774 6788999999999999999999999998776622 122221 345667779999998
Q ss_pred -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
+|+|+||+++++++++.+.......+++.++++++++.++|+...+ ++..++++++.+++.+.|+++ +.+..+
T Consensus 241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 316 (388)
T 1j32_A 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----PGLECP 316 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----TTCBCC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----CCCccc
Confidence 7999999999999988877655567888999999999888874221 234455556666666665543 223222
Q ss_pred ecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 405 RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+. |+++++.+.... .....+.+.|++ +||++.++..+ .+++||+++ ++++++++++++|++++++
T Consensus 317 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 317 KPDGAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 333 455566552200 114567888875 79999987544 478999975 6999999999999998865
No 77
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=1.8e-31 Score=268.12 Aligned_cols=327 Identities=12% Similarity=0.061 Sum_probs=230.6
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc--ccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE 172 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~ 172 (480)
+|+.++||.+|.. .+|+ +|.+.+++.+++.+..+... .+..+...++++.+.+..+ .+.++|++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 4788999988876 4576 79999999999876321111 1122333444444444332 45578999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (480)
Q Consensus 173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (480)
.+++.+.. ++++|++.+++||+........ |...+.+| .| .+++++.++
T Consensus 104 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~--------~d----~~~l~~~l~---- 152 (370)
T 2z61_A 104 FALSSIID--DGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD--------FT----VESLEEALS---- 152 (370)
T ss_dssp HHHHHHCC--TTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC--------SS----HHHHHHHCC----
T ss_pred HHHHHhcC--CCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC--------CC----HHHHHHhcc----
Confidence 99997743 5689999999999876654322 22222222 12 577887775
Q ss_pred CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeeeccccc-
Q 011669 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAKGIG- 327 (480)
Q Consensus 253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~sK~~g- 327 (480)
+++++|+++++++++|.+.+ ++ |.++|++||+++|+||+|+++.++| ....+... +....+.++||.++
T Consensus 153 ~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~ 226 (370)
T 2z61_A 153 DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAM 226 (370)
T ss_dssp SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCC
Confidence 26788888888888998876 55 9999999999999999999987766 33333222 22333558999998
Q ss_pred cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-hhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
+|+|+||+++++++++.+.......+++.|+++++++.++|+. ..+ ++..+++++..+++.+.|+++ .+... .
T Consensus 227 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~ 302 (370)
T 2z61_A 227 TGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF--GWEVN--N 302 (370)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBCC--C
T ss_pred ccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc--CCeec--C
Confidence 7999999999999998887655556788999999999888865 221 334556666667777766654 22211 1
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
...|+++++++.. ....+.+.|+ ++||++.++..+ .+++||+++ ++++++++++++|++++++
T Consensus 303 ~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~~ 370 (370)
T 2z61_A 303 PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLNK 370 (370)
T ss_dssp CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhC
Confidence 2236667766632 1456788887 789999987433 468999977 6999999999999998753
No 78
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=5e-32 Score=273.33 Aligned_cols=330 Identities=15% Similarity=0.149 Sum_probs=236.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar 179 (480)
+|||.+|... ++ .+|.+.+++.+++.+. ..|.. ....+++++|+++++.+.++|++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSCS--SC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCCC--CC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 7899888763 45 6899999999988762 22333 256789999999988766789999999999999999874
Q ss_pred hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259 (480)
Q Consensus 180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi 259 (480)
.++++|++.+++||+....... .+. .+..++.+. +...+..| .+++++.++ +++++|+
T Consensus 100 --~~gd~Vl~~~~~~~~~~~~~~~-~g~----------~~~~v~~~~-~~~~~~~d----~~~l~~~l~----~~~~~v~ 157 (381)
T 1v2d_A 100 --GPGDEVVVLEPFFDVYLPDAFL-AGA----------KARLVRLDL-TPEGFRLD----LSALEKALT----PRTRALL 157 (381)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHH-TTC----------EEEEEECEE-ETTEEECC----HHHHHTTCC----TTEEEEE
T ss_pred --CCCCEEEEcCCCchhHHHHHHH-cCC----------EEEEEeCCC-CCccCCcC----HHHHHHhcC----cCCEEEE
Confidence 3678999999999987654322 111 112222210 00012223 567776663 3688888
Q ss_pred EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc--ccCCCcceeeeccccc-cCccccccc
Q 011669 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGVVPDIVTMAKGIG-NGIPLGAVV 336 (480)
Q Consensus 260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~--~~~~~pDivt~sK~~g-~G~pig~v~ 336 (480)
++++++++|.+. +.+++++|.++|++||+++|+||+|++|.+ |.....+. ..+..+++.++||.++ +|+|+||++
T Consensus 158 ~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 235 (381)
T 1v2d_A 158 LNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIV 235 (381)
T ss_dssp EESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred ECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEE
Confidence 888888888774 678999999999999999999999998854 41111121 3466777889999998 799999999
Q ss_pred cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--h--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669 337 TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412 (480)
Q Consensus 337 ~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~ 412 (480)
+++++++.+.......+++.++++++++.++|+... + ++..++++++.+++.+.|+++ .+... ....|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~ 311 (381)
T 1v2d_A 236 GPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM--GLRVY--VPEGTYFLM 311 (381)
T ss_dssp CCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT--TCCEE--CCSBSSEEE
T ss_pred eCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC--CCEec--CCCcceEEE
Confidence 999988887655455678889999999999998652 2 345566666777777776663 22211 122367778
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++... + +.+.|.++||++.++..+ .+++||+++. +++++++++++|++++++
T Consensus 312 ~~~~~~-----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 312 AELPGW-----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp EECTTC-----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred EecChH-----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 776321 1 566778999999887432 4689999775 999999999999988754
No 79
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=7.4e-32 Score=273.10 Aligned_cols=335 Identities=17% Similarity=0.192 Sum_probs=238.8
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE 169 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGse 169 (480)
+|+.+|||.+|.+ .+|+ +|.+.+++.+++.+... .|.. ....++++.+++++ + .+.++|++++||++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~ 112 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEV---KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ 112 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCC---CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence 5788999988876 4564 79999999998876321 2221 23345555555544 3 24578999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
|++.+++.+. .+++.|++.+++|++....+... |...+.+|......|..| .++++++++
T Consensus 113 al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~- 172 (389)
T 1o4s_A 113 ALFNAFMALL--DPGDEVIVFSPVWVSYIPQIILA-------------GGTVNVVETFMSKNFQPS----LEEVEGLLV- 172 (389)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHHTCC-
T ss_pred HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecCCccCCCCC----HHHHHHhcc-
Confidence 9999999763 35688999999999876554322 222222221111123223 567777764
Q ss_pred cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeeccc
Q 011669 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKG 325 (480)
Q Consensus 250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~sK~ 325 (480)
+++++|+++++++++|.+ .+++++++|.++|++||+++|+||+|+++.+.| ....... .+....+.++||.
T Consensus 173 ---~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~ 247 (389)
T 1o4s_A 173 ---GKTKAVLINSPNNPTGVV-YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKS 247 (389)
T ss_dssp ---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTT
T ss_pred ---cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhh
Confidence 267888888888888876 477899999999999999999999999987766 3322222 2333335589999
Q ss_pred cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
++ +|+|+||+++++++++.+.......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ .+... .
T Consensus 248 ~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~ 322 (389)
T 1o4s_A 248 HSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--E 322 (389)
T ss_dssp TTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--C
T ss_pred cCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--c
Confidence 98 79999999999999888876555567888999999888887642 3566777888888888888775 33322 1
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
...|+++++.+. . ....+.+.|+ ++||++.++..+ .+++||+++ .+++++++++++|.+++++
T Consensus 323 ~~~~~~~~~~~~-~---------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 323 PEGAFYLFFKVR-G---------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp CSBSSEEEEECS-S---------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred CCcceEEEEeCC-C---------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence 223667777763 0 1356788887 889999987543 368999977 4999999999999998864
No 80
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=5.4e-32 Score=278.00 Aligned_cols=357 Identities=10% Similarity=0.038 Sum_probs=249.7
Q ss_pred CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh-HHHHHHHHHHHhCC-----
Q 011669 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP----- 155 (480)
Q Consensus 82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~~----- 155 (480)
++....+....+++.+|+.+|||.+|... + ..+|+|.+++.+++.... ...|... ...++++++++++.
T Consensus 27 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~ 101 (437)
T 3g0t_A 27 SIRDLVALVTNLEKATGTKFCRMEMGVPG--L-PAPQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNI 101 (437)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEECCCCSCC--S-CCCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCCEEeccCcCCC--C-CCCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence 33334445566778889999999999865 3 378999999999987532 0122222 23455555555543
Q ss_pred -CCCCEEEEeCCHHHHHHHHHHHHHhhcCCc--eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669 156 -GNLKVVFFTNSGTEANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (480)
Q Consensus 156 -~~~~~v~f~~sGseA~~~Alk~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (480)
.+.++|+||+||++|++.+++.+....+++ +|++.+++|+++...+..... .+..++.. ...|
T Consensus 102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~ 167 (437)
T 3g0t_A 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRG 167 (437)
T ss_dssp CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCT
T ss_pred CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCC
Confidence 346789999999999999999875213567 899999999987766544322 11222211 0111
Q ss_pred CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-c----
Q 011669 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-F---- 307 (480)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~---- 307 (480)
. ...++++++++. .++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+.. .
T Consensus 168 ~----~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 239 (437)
T 3g0t_A 168 E----KLREKLESYLQT---GQFCSIIYSNPNNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEP 239 (437)
T ss_dssp T----HHHHHHHHHHTT---TCCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSS
T ss_pred c----cCHHHHHHHHhc---CCceEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccccc
Confidence 1 126788888842 2556665544478888764 7778999999999999999999999987655411 1
Q ss_pred ---ccccc-cCCCcceeeeccccc-cCccccccccCHHHHH-h-----------------hcCCCccccCCCcHHHHHHH
Q 011669 308 ---WGFEA-HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE-V-----------------LTRRNYFNTFGGNPVCTAAG 364 (480)
Q Consensus 308 ---~~~~~-~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~-~-----------------l~~~~~~~t~~~~~~~~aaa 364 (480)
..+.. .+....+.++||.++ +|+|+||+++++++++ . +.......+++.|+++++++
T Consensus 240 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 319 (437)
T 3g0t_A 240 LYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGM 319 (437)
T ss_dssp CCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHH
T ss_pred chhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHH
Confidence 12221 333444668999999 8999999999999998 7 66555556888999999999
Q ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHhcCceee------Ee-ccceeEEEEEecCCCcCCCCHHHHHHH
Q 011669 365 HAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKDKYGIIGD------VR-GRGFLLGVEFVTDRQLKTPAKAETLYI 432 (480)
Q Consensus 365 ~a~L~~i~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~ 432 (480)
.++|+... -++..++++++.+++++.|+++ ++... .+ ..|.++++.+.. .....+
T Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l 386 (437)
T 3g0t_A 320 AAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKG---------MDSSKL 386 (437)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETT---------CCHHHH
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCC---------CCHHHH
Confidence 99998754 2455666677777777776665 22211 24 567888888741 114678
Q ss_pred HHHHHHcCceeeccCcCC----CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 433 MDKMKEMGVLVGKGGFYG----NVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 433 ~~~l~~~Gv~v~~~~~~~----~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+.|.++||.+.++..++ +++||+++.. +++++++++++|++++++
T Consensus 387 ~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 387 IEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 889999999999875432 6799998844 999999999999998764
No 81
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.98 E-value=2.3e-31 Score=268.92 Aligned_cols=335 Identities=13% Similarity=0.100 Sum_probs=226.9
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHh----CC--CCCC-EEEEeCCHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN 171 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~----~~--~~~~-~v~f~~sGseA~ 171 (480)
.+|||..|.. .+| .+|.|.+++.+++....+ .|.. ....+++++++++ ++ .+.+ +|++++||++|+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 104 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGAN---QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL 104 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence 4788888865 356 689999999999876211 2221 1234455555544 33 3456 899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+.+++.+. .++++|++.+++||+........ |...+.+|.... .|..| .+++++.++
T Consensus 105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~--- 161 (386)
T 1u08_A 105 YAAITALV--RNGDEVICFDPSYDSYAPAIALS-------------GGIVKRMALQPP-HFRVD----WQEFAALLS--- 161 (386)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCTT-TCCCC----HHHHHHHCC---
T ss_pred HHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeecCcc-cCcCC----HHHHHHhhc---
Confidence 99999763 35689999999999876543222 222222221110 23334 677877774
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---ccccc-ccCCCcceeeeccccc
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFE-AHGVVPDIVTMAKGIG 327 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~-~~~~~pDivt~sK~~g 327 (480)
+++++|+++++++++|.+. +.+++++|.++|++||+++|+||+|++|.++|.. +..++ ..+..+.+.++||.++
T Consensus 162 -~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 239 (386)
T 1u08_A 162 -ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH 239 (386)
T ss_dssp -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred -ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC
Confidence 3678888888888888774 7789999999999999999999999998776621 22222 2455666778999999
Q ss_pred -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669 328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG 406 (480)
Q Consensus 328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g 406 (480)
+|+|+||+++++++++.+.......+++.++++++++.++|+.. +++.+++++.....++.|.+..+++++......
T Consensus 240 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 317 (386)
T 1u08_A 240 MTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCE 317 (386)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC
T ss_pred CcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence 79999999999999888876555567888999999998888754 233333333333334444333333332222223
Q ss_pred cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
.|+++++++..... .....+.+.|. ++||++.++..+ .+++||+++ .++++|++++++|++
T Consensus 318 ~g~~~~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 318 GTYFLLVDYSAVST------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp BSSEEEEECTTTCC------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 36788888732100 01356777676 689999887433 468999976 589999999999864
No 82
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.98 E-value=4.5e-31 Score=263.26 Aligned_cols=329 Identities=10% Similarity=0.070 Sum_probs=221.8
Q ss_pred EeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeC
Q 011669 86 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165 (480)
Q Consensus 86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~ 165 (480)
.+++|.+++|.+|+++|||.+|.... + .+|+|.+++.+++... ..|+++...+++++|+++++.+.++|++++
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~~~--~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVWTD--G-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSCCC--S-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCCCC--C-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 56799999999999999999887544 4 7899999998877432 234444447899999999987778999999
Q ss_pred CHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCC-CcCCCCCCChHHHHHHHH
Q 011669 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKDVQ 244 (480)
Q Consensus 166 sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~d~~~~~~~le 244 (480)
||++|++.+++.+. ++.|++.+++|++........ |...+.+|. .....+.
T Consensus 75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~----------- 126 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMY-------------EHEVCFYPSNEDIGEAD----------- 126 (350)
T ss_dssp HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHT-------------TCEEEEEETTSCGGGSC-----------
T ss_pred CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHc-------------CCeEEEEecCCccccCc-----------
Confidence 99999999998654 689999999999876544332 222222221 1001110
Q ss_pred HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC-CEEEEcccccCccccCCCc-ccccccCCCcceeee
Q 011669 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVTM 322 (480)
Q Consensus 245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~DEv~tgfgr~G~~~-~~~~~~~~~pDivt~ 322 (480)
..++++|+++..+|++|.+.+ ++++.++++.++ .++|+||+|.+|++.+... ...+..+....+.+|
T Consensus 127 -------~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~ 195 (350)
T 3fkd_A 127 -------FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSF 195 (350)
T ss_dssp -------CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEES
T ss_pred -------cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecC
Confidence 125677777777888898865 455555555544 5999999999998776211 112223334455689
Q ss_pred ccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 323 sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
||.++ +|+|+||+++++++++.+.... .+++.|+++++++.++|+... .+...+. .++.+++.+.|+ +++
T Consensus 196 sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~L~----~~~ 268 (350)
T 3fkd_A 196 SHAYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKW-QRNTVDFITALN----RLD 268 (350)
T ss_dssp HHHHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHH-HHHHHHHHHHHH----HST
T ss_pred chhccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHH-HHHHHHHHHHHh----cCC
Confidence 99999 8999999999999999887654 467889999999999987433 1122222 244445555444 345
Q ss_pred ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD 474 (480)
Q Consensus 400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~ 474 (480)
.+...++.|.++++.+... ....+.+.|++ +||++.++..+ .+++||+++ +++++++++++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~ 336 (350)
T 3fkd_A 269 GVEVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALE 336 (350)
T ss_dssp TEEECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred CcEECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHH
Confidence 4555667788888877431 24678888888 99999987543 578999944 8899999999999
Q ss_pred HHHhh
Q 011669 475 YSLSK 479 (480)
Q Consensus 475 ~~l~~ 479 (480)
+++++
T Consensus 337 ~~~~~ 341 (350)
T 3fkd_A 337 TFLEK 341 (350)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88764
No 83
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.98 E-value=4.1e-30 Score=258.35 Aligned_cols=324 Identities=16% Similarity=0.122 Sum_probs=234.0
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHh------CCCCCCEEEEeCCHHHHHHHHH
Q 011669 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK------MPGNLKVVFFTNSGTEANELAI 175 (480)
Q Consensus 102 lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~------~~~~~~~v~f~~sGseA~~~Al 175 (480)
|||.+|.. .+| .+|+|.+++.+++.+.......|......+++++++++ ++.+.++|++++||++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89988876 455 78999999999987642222334433335777777777 5556678999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+.+.. +++.|++.+++||+.......... .+..++.. ..|..| .+++++.++.. ++
T Consensus 110 ~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~----~~~~~d----~~~l~~~i~~~---~~ 165 (369)
T 3cq5_A 110 QAFGG--PGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRG----ADFRID----MDVALEEIRAK---QP 165 (369)
T ss_dssp HHHCS--TTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECC----TTSSCC----HHHHHHHHHHH---CC
T ss_pred HHhcC--CCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC----cCCCCC----HHHHHHHhhcc---CC
Confidence 87643 568999999999987764433211 11222211 122234 57788777631 56
Q ss_pred EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccC-CCcceeeeccccc-cCccc
Q 011669 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG-VVPDIVTMAKGIG-NGIPL 332 (480)
Q Consensus 256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~-~~pDivt~sK~~g-~G~pi 332 (480)
++|+++++++++|.+.+ ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.++||.++ +|+|+
T Consensus 166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 240 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL 240 (369)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence 78888889999998876 7888899999999999999999887543 33322 3344 4566779999998 79999
Q ss_pred cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (480)
Q Consensus 333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 411 (480)
||+++++++++.+.... .+|+.|+++++++.++|+..+. ++..++.++..+++.+.|++. + +...++.|.++
T Consensus 241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~ 313 (369)
T 3cq5_A 241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV 313 (369)
T ss_dssp EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence 99999999988887543 4567899999999999874211 234555666666666666553 3 23346678888
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
++++.. ....+.+.|.++||++.+++ ..+++||+++ +++|+++++++|+++++
T Consensus 314 ~~~~~~----------~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 314 FFGDFS----------DQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp EEECCS----------SHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred EEECCC----------CHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 887631 13567888899999998873 3578999976 89999999999999875
No 84
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.98 E-value=4.4e-31 Score=268.80 Aligned_cols=348 Identities=11% Similarity=0.046 Sum_probs=230.4
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-----ChHHHHHHHHHHHhCC--CCC-CEEEEeCCHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMP--GNL-KVVFFTNSGTEA 170 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~l~e~L~~~~~--~~~-~~v~f~~sGseA 170 (480)
..+|||..|.... + .+|+|.+|+.+++.+.. ...|. .+....+++.+.+.++ .+. ++|++++||++|
T Consensus 23 ~~~i~l~~~~~~~--~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 23 PSVVNLGQGFPDI--S-PPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp TTSEECSSCCCCS--C-CCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCeEEecCCCCCC--C-CCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 4578888887543 2 67999999999987531 11222 2333444444444332 334 689999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-------cCCCCCCChHHHHHHH
Q 011669 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-------YRGVFGADGEMYAKDV 243 (480)
Q Consensus 171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~d~~~~~~~l 243 (480)
++.+++.+. .+++.|++..++|++.......... . +..++.... ....|..| .+++
T Consensus 98 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~g~~~~~~~~~~d----~~~l 160 (410)
T 3e2y_A 98 LFNSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGA-V----------PVFIPLRSKPTDGMKWTSSDWTFD----PREL 160 (410)
T ss_dssp HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECEECCCCSSCCBGGGEECC----HHHH
T ss_pred HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCC-E----------EEEEeccccccccccccccCCcCC----HHHH
Confidence 999999764 3678899999999987655433221 1 111111100 00111122 5667
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcce
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDI 319 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDi 319 (480)
++.++ .++++|++++++|++|.+. +++.+++|.++|++||+++|+||+|++|+++|.....+... +...++
T Consensus 161 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 161 ESKFS----SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235 (410)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred HhhcC----CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence 66663 3788899999899999875 77789999999999999999999999998877323233222 233455
Q ss_pred eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHH
Q 011669 320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-----i~~~~~~~~~~~~~~~l~~~L~~ 393 (480)
.++||.+| +|+|+||+++++++++.+.......+++.++++++++.++|+. ...+++.++..+..+..++.|.+
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 8999999999999998887655667889999999999999874 11133334444444444444444
Q ss_pred hHHhcCceeeEeccceeEEEEEecCCCcCCC---CHHHHHHHHHH-HHHcCceeeccCcC---------CCEEEEeCCCC
Q 011669 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLYIMDK-MKEMGVLVGKGGFY---------GNVFRITPPLC 460 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~ 460 (480)
...++++....+..|+++++++......... .......+++. +.++||++.+|..+ .+++||+ +.
T Consensus 316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~ 393 (410)
T 3e2y_A 316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FI 393 (410)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CC
T ss_pred HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--Ec
Confidence 4444444444556688888887542210000 00112345554 45789999987654 3789999 56
Q ss_pred CCHHHHHHHHHHHHH
Q 011669 461 FTKEDADYLVDVMDY 475 (480)
Q Consensus 461 ~t~~~id~~l~~l~~ 475 (480)
.+++++++++++|++
T Consensus 394 ~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 KKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999999975
No 85
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.98 E-value=1.9e-31 Score=272.10 Aligned_cols=340 Identities=14% Similarity=0.088 Sum_probs=230.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELAI 175 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~Al 175 (480)
+|||..|.. .+| .+|.|.+++.+++++.. +....+..+...++++.+.+.++ .+.+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 689988865 355 68999999999997621 11111122333444444444334 3455 8999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHHHHHHccCCCc
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFGTSGH 254 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~~~~~ 254 (480)
+.+.. +++.|++.+++||+........ + ...+.+|.... ..|..| .++|++.++ .+
T Consensus 104 ~~~~~--~gd~Vl~~~~~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~~d----~~~l~~~l~----~~ 160 (411)
T 2o0r_A 104 LGLVE--PGSEVLLIEPFYDSYSPVVAMA-G------------AHRVTVPLVPDGRGFALD----ADALRRAVT----PR 160 (411)
T ss_dssp HHHCC--TTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECEEETTEEECC----HHHHHHHCC----TT
T ss_pred HHhcC--CCCEEEEeCCCcHhHHHHHHHc-C------------CEEEEeeccccccCCCCC----HHHHHHhhc----cC
Confidence 97743 5689999999999876543221 1 11121111100 012123 577887774 36
Q ss_pred eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeeccccc-cC
Q 011669 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKGIG-NG 329 (480)
Q Consensus 255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~sK~~g-~G 329 (480)
+++|+++++++++|.+ .+.+++++|.++|++||+++|+||+|++++++|.....+.. .+..+.+.++||.++ +|
T Consensus 161 ~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 239 (411)
T 2o0r_A 161 TRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG 239 (411)
T ss_dssp EEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred ceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence 7888888888889976 47789999999999999999999999998877632222222 233455668999999 79
Q ss_pred ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669 330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (480)
Q Consensus 330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 407 (480)
+|+||+++++++++.+.......+++.++++++++.++|+...+ ++..++++++.+++.+.|+++ ++.......
T Consensus 240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 315 (411)
T 2o0r_A 240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG 315 (411)
T ss_dssp TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence 99999999999988877655556788888899999888875421 234455556666666666554 322222334
Q ss_pred ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC---------------CCEEEEeCCCCCCHHHHHHHHH
Q 011669 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY---------------GNVFRITPPLCFTKEDADYLVD 471 (480)
Q Consensus 408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------------~~~iRi~p~~~~t~~~id~~l~ 471 (480)
|+++++++..... .....+.+.|+ ++||++.++..+ .+++||+++ .++++++++++
T Consensus 316 g~~~~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~ 387 (411)
T 2o0r_A 316 TYFLCADPRPLGY------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIR 387 (411)
T ss_dssp SSEEEEECGGGTC------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHH
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHH
Confidence 6788888743100 01345777665 679999886432 368999965 58999999999
Q ss_pred HHHHHHhh
Q 011669 472 VMDYSLSK 479 (480)
Q Consensus 472 ~l~~~l~~ 479 (480)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887653
No 86
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.98 E-value=2.8e-31 Score=273.97 Aligned_cols=347 Identities=14% Similarity=0.090 Sum_probs=236.3
Q ss_pred eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccC-ChHHHHHHHHHHHhC----CCCCCEEEEeCCH
Q 011669 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG 167 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~-~~~~~~l~e~L~~~~----~~~~~~v~f~~sG 167 (480)
+.+|+++|||..|.... ..+|.|.+|+.+++.+.. +....|. .....+|+++|++++ +.+.++|+|++|+
T Consensus 65 ~~~~~~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~ 141 (449)
T 3qgu_A 65 KNPDAKIISLGIGDTTE---PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS 141 (449)
T ss_dssp HCTTCCCEECSSCCCCC---CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred hCCCCCEEEeeCCCCCC---CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence 34689999999986543 368999999999998653 2222343 345678888888887 5567789999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
+++++.+ .... .+++.|++.+++||+.............++. .....+..++... ...+..| ++
T Consensus 142 ~~al~~~-~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~~~-------~~--- 205 (449)
T 3qgu_A 142 KCDIARI-QMMF--GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFFPD-------LS--- 205 (449)
T ss_dssp HHHHHHH-HHHH--CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTCCC-------GG---
T ss_pred HHHHHHH-HHHh--CCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCcCC-------hh---
Confidence 9999988 3322 3678999999999998876665543211110 0001133333211 1112111 11
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeec
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA 323 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~s 323 (480)
.. .++++|+++..+|++|.+. +.+.+++|+++|++||+++|+||+|++|++.|.....+.. .++.+++.+||
T Consensus 206 -~~--~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 281 (449)
T 3qgu_A 206 -KA--KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS 281 (449)
T ss_dssp -GC--CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred -Hc--CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence 11 3567777777788888764 7788999999999999999999999999877632222222 23445577899
Q ss_pred cccc-cCccccccccCHHHHH--------hhcCCCccccCCCcHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Q 011669 324 KGIG-NGIPLGAVVTTPEIAE--------VLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERL 391 (480)
Q Consensus 324 K~~g-~G~pig~v~~~~~~~~--------~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~~~~~~~~~~~~~~l~~~L 391 (480)
|.+| +|+|+||+++++++++ .+.......+++.++++++++.++|+... .++..++++++.+++++.|
T Consensus 282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 361 (449)
T 3qgu_A 282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF 361 (449)
T ss_dssp GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999988765 22222233555789999999998886421 1345556666666666666
Q ss_pred HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHH
Q 011669 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDA 466 (480)
Q Consensus 392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~i 466 (480)
+++ ++.......|+++|+.+. . ....++++.|+++ ||++.++..+ .+++||+ +..+++++
T Consensus 362 ~~~----g~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i 426 (449)
T 3qgu_A 362 TEM----GFSVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENI 426 (449)
T ss_dssp HHT----TCCEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHH
T ss_pred HHC----CCeeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHH
Confidence 654 322222234778888873 1 1145677777765 9999987543 4799999 66799999
Q ss_pred HHHHHHHHHHHhh
Q 011669 467 DYLVDVMDYSLSK 479 (480)
Q Consensus 467 d~~l~~l~~~l~~ 479 (480)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 87
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=4e-31 Score=271.10 Aligned_cols=346 Identities=13% Similarity=0.089 Sum_probs=229.7
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHH---------hccccccccCChH-HHHHHHHHHHhCC--------CCCCEE
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK---------RIQHSTVLYLNHA-IADFAEALASKMP--------GNLKVV 161 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~---------~~~~~~~~~~~~~-~~~l~e~L~~~~~--------~~~~~v 161 (480)
.++||.++.. .+| +|.+.+++.++.. ... ....|..+. ..++++.++++++ .+.++|
T Consensus 37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 4788876653 344 5788888875421 010 012233322 4556666666543 456789
Q ss_pred EEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669 162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (480)
Q Consensus 162 ~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (480)
++++|+++|++.+++.+.. +++.|++.+++||++........ |+..+.+|......|..| .+
T Consensus 112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~ 173 (428)
T 1iay_A 112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK 173 (428)
T ss_dssp EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence 9999999999999997753 56899999999998765332222 222333332111223334 56
Q ss_pred HHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc------
Q 011669 242 DVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------ 313 (480)
Q Consensus 242 ~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~------ 313 (480)
++++.++.. ...++++|++...++++|.+ .+++++++|.++|++||+++|+||+|++|++.|..+..+...
T Consensus 174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 174 AVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 777777531 12367777777677888876 488999999999999999999999999977665222121111
Q ss_pred -CCCcc----eeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---h--hHHHHHHH
Q 011669 314 -GVVPD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAH 381 (480)
Q Consensus 314 -~~~pD----ivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~--~~~~~~~~ 381 (480)
++.+| +.|+||.+| +|+|+||+++ ++++++.+... ..+++.|+++++++.++|+..+ + ++..++++
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 330 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG 330 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 22356 558999999 8999999998 68888776542 2346788999999888886422 1 23445555
Q ss_pred HHHHHHHHHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEE
Q 011669 382 VVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRI 455 (480)
Q Consensus 382 ~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi 455 (480)
+..+++.+.|+++ ++ ..+++ .|+++++++.... ..+.......+.+.|+++ ||++.++..+ .+++||
T Consensus 331 ~~~~~l~~~L~~~----g~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRi 403 (428)
T 1iay_A 331 KRHKHFTNGLEVV----GI-KCLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRV 403 (428)
T ss_dssp HHHHHHHHHHHHT----TC-CBCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEE
T ss_pred HHHHHHHHHHHhc----CC-cccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence 6666666666554 22 22344 5788888874321 011222345688888876 9999987544 368999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++ .++++++++++++|++++++
T Consensus 404 s~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 404 CFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred EEe-cCCHHHHHHHHHHHHHHHhc
Confidence 987 58999999999999998865
No 88
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=2.8e-31 Score=270.30 Aligned_cols=343 Identities=14% Similarity=0.065 Sum_probs=233.7
Q ss_pred eCCCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC------CCCCCEEEEeCC
Q 011669 95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNS 166 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~------~~~~~~v~f~~s 166 (480)
..+|+.+|||..|.++. .++ .+|++.+++.+++.+... .|.. ....++++++++++ +.+.++|++++|
T Consensus 34 ~~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 34 EKKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHN---YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp HHTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred HHcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 34688999999887743 455 579999999998876421 1222 12344445554443 445678999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
|++|++.+++.+. .+++.|++.+++||++...+... |...+.+|......|..| .++|++.
T Consensus 110 ~~~al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~ 170 (406)
T 1xi9_A 110 VTEALQLIFGALL--DPGDEILVPGPSYPPYTGLVKFY-------------GGKPVEYRTIEEEDWQPD----IDDIRKK 170 (406)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEEEEGGGTSEEC----HHHHHHH
T ss_pred hHHHHHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCCCcCCcCC----HHHHHHh
Confidence 9999999999773 35789999999999876554322 111111111100112123 5778877
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc-cee--eec
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP-DIV--TMA 323 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p-Div--t~s 323 (480)
++ +++++|+++++++++|.+. +++++++|.++|++||+++|+||+|++|.+.+ ....+..++... +++ ++|
T Consensus 171 l~----~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~s 244 (406)
T 1xi9_A 171 IT----DRTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLS 244 (406)
T ss_dssp CC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEEST
T ss_pred hC----cCceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcCCCceEEEEeccc
Confidence 75 2678888888888899764 77899999999999999999999999987744 333333332111 343 689
Q ss_pred cccc-cCccccccc--cCH----HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHh
Q 011669 324 KGIG-NGIPLGAVV--TTP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTAL 394 (480)
Q Consensus 324 K~~g-~G~pig~v~--~~~----~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l 394 (480)
|.++ +|+|+||++ +++ ++++.+....... ++.|+++++++.++|+...+ +++.++++++.+++.+.|++
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~- 322 (406)
T 1xi9_A 245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE- 322 (406)
T ss_dssp TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9998 799999999 898 8888776543333 77889999999999863322 33445555556666555554
Q ss_pred HHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHH
Q 011669 395 KDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADY 468 (480)
Q Consensus 395 ~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~ 468 (480)
++.+..+.+. |+++++.+.... ......+.+.|+ ++||++.++..+ .+++||+++ ++++++++
T Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~ 391 (406)
T 1xi9_A 323 ---IPGISTTKPQGAFYIFPKIEVGP------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEE 391 (406)
T ss_dssp ---STTEECCCCCBSSEECCEECSCS------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHH
T ss_pred ---CCCCeeecCCeeEEEEEecCccC------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHH
Confidence 3333333333 556666763210 011456777776 889999887543 468999976 89999999
Q ss_pred HHHHHHHHHhh
Q 011669 469 LVDVMDYSLSK 479 (480)
Q Consensus 469 ~l~~l~~~l~~ 479 (480)
++++|++++++
T Consensus 392 ~~~~l~~~l~~ 402 (406)
T 1xi9_A 392 AMDRFEKFMKE 402 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 89
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1.1e-30 Score=261.60 Aligned_cols=327 Identities=15% Similarity=0.106 Sum_probs=231.5
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al 175 (480)
.+|+.+|||.++.... ..+|+|.+|+.+++.+..+....|+++...+++++|+++++.+.++|+|++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNENPY---PPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCCSS---CCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCCCC---CCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 5788999999887643 3789999999999887422223445555678999999999766789999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+.+.. +++.|++.+++|++.......... .+..++..+ .|. + +++++.. ++
T Consensus 100 ~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~------~---~~l~~~~---~~ 150 (360)
T 3hdo_A 100 RAFAA--EGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTG----DFR------I---AGFPERY---EG 150 (360)
T ss_dssp HHHCC--TTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCT----TSS------B---TTCCSSB---CS
T ss_pred HHHhC--CCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCC----CCC------H---HHHHhhc---CC
Confidence 97643 568999999999987755443321 112222211 111 1 1222211 23
Q ss_pred EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCccccc
Q 011669 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGA 334 (480)
Q Consensus 256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~ 334 (480)
++++++..++++|.+.+ ++++.++|+++|+++|+||+|++|+..+ .....+..+..+.+.++||.++ +|+|+||
T Consensus 151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 225 (360)
T 3hdo_A 151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL 225 (360)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence 46777777888898887 8999999999999999999999874332 2212233455556678999998 7999999
Q ss_pred cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEE
Q 011669 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413 (480)
Q Consensus 335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i 413 (480)
+++++++++.+.... .+++.|+++++++.++|+..+. ++..++.+++.+++++.|+++ + +...++.|.++++
T Consensus 226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~ 298 (360)
T 3hdo_A 226 AIARPEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA 298 (360)
T ss_dssp EECCHHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred EeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence 999999998876543 4578999999999999874110 233444445555555555443 3 3345677888887
Q ss_pred EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
.+... ....+.+.|.++||++.+++. ..+++||+++ +++|+|+++++|+++.+
T Consensus 299 ~~~~~---------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 299 TPPDR---------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp ECTTC---------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ECCCC---------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 65311 146688889999999988653 2478999954 99999999999998754
No 90
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=2e-30 Score=260.84 Aligned_cols=303 Identities=15% Similarity=0.122 Sum_probs=222.3
Q ss_pred ChHHHHHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669 140 NHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (480)
Q Consensus 140 ~~~~~~l~e~L~~~~-~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g 218 (480)
.....+|++++++++ +.+.++|++++||++|++.+++.+. .+++.|++.+++|++........ |
T Consensus 62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g 126 (375)
T 3op7_A 62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSL-------------G 126 (375)
T ss_dssp TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHT-------------T
T ss_pred CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------C
Confidence 445678999999987 3466789999999999999999764 36789999999999866543322 2
Q ss_pred eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298 (480)
Q Consensus 219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t 298 (480)
...+.+|......|..| .++++++++ +++++|+++++++++|.+. +++++++|.++|++||+++|+||+|+
T Consensus 127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~ 197 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYR 197 (375)
T ss_dssp CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 22222221111122123 677888775 3678899999999999764 88889999999999999999999999
Q ss_pred CccccCCCcccccccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ 377 (480)
Q Consensus 299 gfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~ 377 (480)
+|++.+ .....+.++..+++.+|||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+.. +.+.
T Consensus 198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 274 (375)
T 3op7_A 198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL 274 (375)
T ss_dssp CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence 987764 2323345666788889999999 79999999999999999988777788899999999999888742 3445
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEE
Q 011669 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVF 453 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~i 453 (480)
++.++.....++.+.+..++++.+..+.+. |.+.++.+.... ....+.+.| .++||++.++..+ .+++
T Consensus 275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~i 346 (375)
T 3op7_A 275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYV 346 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeE
Confidence 555554455555555555555555544444 455666663211 134566666 5889999987654 4789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
||+ +..+++++++++++|++++++
T Consensus 347 Ri~--~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 347 RLG--FACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp EEC--CCSCHHHHHHHHHHHHHHHGG
T ss_pred EEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 999 556779999999999999875
No 91
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=1e-30 Score=265.15 Aligned_cols=336 Identities=15% Similarity=0.112 Sum_probs=232.7
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-cccc-----CChHHHHHHHHHHHhCC--CCCCEEEEeCCHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLY-----LNHAIADFAEALASKMP--GNLKVVFFTNSGTE 169 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~-----~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGse 169 (480)
|+.+|||..|.+.. ..+|+|.+++.+++.+.... ...| ..+...++++.+.+.++ .+.++|+|++||++
T Consensus 34 ~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGNPSI---PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCCCCS---CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCCCCC---CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 56799999885443 47899999999998873111 1112 12344455555554433 45678999999999
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 170 ANELAIMMARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 170 A~~~Alk~ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
|++.+++.+.. ++ +.|++.+++|+++....... |...+.+|... ..|.-| .++++++++
T Consensus 111 al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~ 170 (398)
T 3ele_A 111 SLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADT-EHFQID----FDALEERIN 170 (398)
T ss_dssp HHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCT-TTSSCC----HHHHHHTCC
T ss_pred HHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHhC
Confidence 99999997743 55 89999999999876654332 22233332211 122234 577777764
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH------hCCEEEEcccccCccccCCCc-ccccccCCCcceee
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVT 321 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~tgfgr~G~~~-~~~~~~~~~pDivt 321 (480)
.++++|++...+|++|.+. +.+.+++|.++|++ ||+++|+||+|++|.++|... ...+..+..+.+.+
T Consensus 171 ----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s 245 (398)
T 3ele_A 171 ----AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYS 245 (398)
T ss_dssp ----TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEE
T ss_pred ----cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEe
Confidence 3678888877788888765 77779999999999 999999999999998776221 11233444556668
Q ss_pred eccccc-cCccccccccCHHHHH------hhcCC-CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669 322 MAKGIG-NGIPLGAVVTTPEIAE------VLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 322 ~sK~~g-~G~pig~v~~~~~~~~------~l~~~-~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~ 393 (480)
+||.++ +|+|+||+++++++++ .+... ....+++.++++++++.+.++ .....+++++..+++.+.|++
T Consensus 246 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~ 322 (398)
T 3ele_A 246 YSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTR 322 (398)
T ss_dssp STTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8999999999987432 22211 122466778888887776654 333567778888888888877
Q ss_pred hHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHH
Q 011669 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVD 471 (480)
Q Consensus 394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~ 471 (480)
+ ++.......|+++|+.+... ....+.+.|.++||++.++..+ .+++||++. +++++++++++
T Consensus 323 ~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~ 387 (398)
T 3ele_A 323 I----GYHCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMP 387 (398)
T ss_dssp H----TCCEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHH
T ss_pred c----CCeecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHH
Confidence 5 22111223355578876321 1456778889999999987544 479999964 79999999999
Q ss_pred HHHHHHhh
Q 011669 472 VMDYSLSK 479 (480)
Q Consensus 472 ~l~~~l~~ 479 (480)
+|++++++
T Consensus 388 ~l~~~l~~ 395 (398)
T 3ele_A 388 AFEKIYKK 395 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 92
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.5e-30 Score=263.62 Aligned_cols=338 Identities=14% Similarity=0.091 Sum_probs=229.0
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN 171 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~ 171 (480)
.+|+++|||.+|.. .++ .+|.|.+++ +++.+.... ...+..+....+++.+.+..+ .+.++|++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 46889999998876 345 578999999 887653211 111122334444444444332 3457899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+.+++.+. .++++|++.+++||+........ + ...+.+|......|. . .++|++.++
T Consensus 116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~~~----~-~~~l~~~l~--- 172 (409)
T 2gb3_A 116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIA-G------------VKLIPVTRRMEEGFA----I-PQNLESFIN--- 172 (409)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHH-T------------CEEEEEECCGGGTSC----C-CTTGGGGCC---
T ss_pred HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-C------------CEEEEeccCCCCCCc----c-HHHHHHhhC---
Confidence 99999763 36789999999999876644322 1 111111111001111 0 134555553
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Cccee--eeccccc-
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIG- 327 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDiv--t~sK~~g- 327 (480)
+++++|+++++++++|.+. +++++++|.++|++||+++|+||+|+++.++| ..... ..+. ..|++ ++||.++
T Consensus 173 -~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred -cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence 3678888888888888764 67899999999999999999999999987766 44333 1222 23554 7899999
Q ss_pred cCccccccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 328 NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 328 ~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
+|+|+||+++++ ++++.+.......+ +.|+++++++.++|+... -+++.++++++.+++.+.|+++ .+..+ ..
T Consensus 249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~ 324 (409)
T 2gb3_A 249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK 324 (409)
T ss_dssp GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence 799999999998 88887765444445 889999999988885321 1234455566666666666654 22220 12
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc------CceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHH
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM------GVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVD 471 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~ 471 (480)
...|+++++.+. . .....+.+.|+++ ||++.++..+ .+++||+++ +++++++++++
T Consensus 325 ~~~~~~~~~~~~-~--------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~ 393 (409)
T 2gb3_A 325 PSGAFYITAELP-V--------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAID 393 (409)
T ss_dssp CSBSSEEEEECS-S--------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHH
T ss_pred CCeeEEEEEEeC-C--------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHH
Confidence 334677777763 1 0145688888877 9999886433 578999977 89999999999
Q ss_pred HHHHHHhh
Q 011669 472 VMDYSLSK 479 (480)
Q Consensus 472 ~l~~~l~~ 479 (480)
+|++++++
T Consensus 394 ~l~~~l~~ 401 (409)
T 2gb3_A 394 VLMEGLKM 401 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 93
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=1.8e-31 Score=273.78 Aligned_cols=342 Identities=13% Similarity=0.066 Sum_probs=231.5
Q ss_pred CEEEeccCCcccccCCCCCHHH--HHHHHHHHHhccccccccCCh-HHHHHHHHHHHhC-----CCCCCE---EEEeCCH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYV--VDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM-----PGNLKV---VFFTNSG 167 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v--~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~-----~~~~~~---v~f~~sG 167 (480)
+.++||..|.+. .+|+ +|.+ .+++.+++... ....|... ...+++++|++++ +.+.++ |++++||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999998874 5674 6767 77777665431 11233332 3567777777776 656677 9999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
++|++.+++.+.. +++.|++.+++||++...... . |...+.+|..... |+.| .+++++.
T Consensus 123 ~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~-------------g~~~~~~~~~~~~-~~~d----~~~l~~~ 182 (430)
T 2x5f_A 123 THGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRN-------------GANLQTYPIFDKD-GHYT----TDSLVEA 182 (430)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTT-------------CCEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred hHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhc-------------CCeEEEEeccCcc-CCcC----HHHHHHH
Confidence 9999999997643 568999999999997655433 2 2222222221111 2233 5678888
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-----hCCEEEEcccccCccccCCCcccc--cccCCCcc-
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AGGLCIADEVQAGFARTGSHFWGF--EAHGVVPD- 318 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~gillI~DEv~tgfgr~G~~~~~~--~~~~~~pD- 318 (480)
++... .+++++++...+|++|.+ ++.+++++|.++|++ ||+++|+||+|++|.+.|..+..+ ...+..++
T Consensus 183 l~~~~-~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (430)
T 2x5f_A 183 LQSYN-KDKVIMILNYPNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNA 260 (430)
T ss_dssp HHHCC-SSEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTT
T ss_pred HHhcC-CCCEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCc
Confidence 86432 255655544448888876 578899999999999 999999999999998776212222 12122333
Q ss_pred -----eeeeccccc-cCcccccccc---CHHHHHhhcCCCcc----ccCCCcHHHHHHHHHHHH-Hh---hh-hHHHHHH
Q 011669 319 -----IVTMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF----NTFGGNPVCTAAGHAVLK-VI---QK-DKLQNNA 380 (480)
Q Consensus 319 -----ivt~sK~~g-~G~pig~v~~---~~~~~~~l~~~~~~----~t~~~~~~~~aaa~a~L~-~i---~~-~~~~~~~ 380 (480)
+.++||.++ +|+|+||+++ ++++++.+...... .+++.|+++++++.++|+ .. +. +...+++
T Consensus 261 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 340 (430)
T 2x5f_A 261 ILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTL 340 (430)
T ss_dssp EEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 457899998 7999999999 99998887654433 678899999999999987 32 11 1133444
Q ss_pred HHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcCCCEEEEeCC
Q 011669 381 HVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFYGNVFRITPP 458 (480)
Q Consensus 381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~p~ 458 (480)
++..+++.+.|++.....+ +....+. |+++|+.+. .. ....+.+.|.+ +||++.+++ .+++||+++
T Consensus 341 ~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~--------~~~~~~~~l~~~~gi~v~~g~--~~~iRis~~ 408 (430)
T 2x5f_A 341 KERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV--------DPEALRKHLIDKYSIGVIALN--ATDIRIAFS 408 (430)
T ss_dssp HHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS--------CHHHHHHHHHHHHCEECEECS--SSEEEEEGG
T ss_pred HHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC--------CHHHHHHHHHHhCCEEEecCC--CCeEEEEEe
Confidence 4444555554442110222 3333333 567888884 10 14567888887 999999873 578999987
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 011669 459 LCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~~ 479 (480)
. .+++++++++++|++++++
T Consensus 409 ~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 409 C-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp G-SCGGGHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHh
Confidence 5 5999999999999998865
No 94
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=6.3e-30 Score=258.11 Aligned_cols=333 Identities=12% Similarity=0.061 Sum_probs=232.1
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc----ccCC--hHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV----LYLN--HAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~----~~~~--~~~~~l~e~L~~~~~~~~~~v~f~~sGseA 170 (480)
++..|+|.. ..|+.+|.|.+|+.+++....+... .|.. +...+++++|+++++.+.++|++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 456677743 2478889999999999876532111 2333 677899999999998766789999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (480)
Q Consensus 171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (480)
++.+++.++ ..++++|++.+++||+........... .|...+.+|......+..| .+++++.++
T Consensus 89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~d----~~~l~~~i~-- 152 (390)
T 1elu_A 89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAAR---------FGITYRFFPVAATLNQGDA----AAVLANHLG-- 152 (390)
T ss_dssp HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHH---------HCCEEEEECCGGGSSSSCH----HHHHHTTCC--
T ss_pred HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHH---------hCcEEEEEcCCCCCCccch----HHHHHHhcC--
Confidence 999999774 236789999999999876542211100 0122222221110112222 566666653
Q ss_pred CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH----HhCCEEEEcccccCccccCCCcccccccCCCcceee--ecc
Q 011669 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK 324 (480)
Q Consensus 251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK 324 (480)
+++++|+++++++++|.+.+ +++|.++|+ +||+++|+||+|+ +|..+ .+.....+|+++ ++|
T Consensus 153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~d~~~~s~~K 220 (390)
T 1elu_A 153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP-----LDFSRLEVDYYAFTGHK 220 (390)
T ss_dssp --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC-----CCTTTSCCSEEEEESSS
T ss_pred --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC-----CChhhcCCCEEEccccc
Confidence 36899999999999998876 999999999 9999999999997 55432 122234567775 889
Q ss_pred ccccCccccccccCHHHHHhhcCCC----------------------ccccCCCcHHHHHHHHHHHHHhhhhH----HHH
Q 011669 325 GIGNGIPLGAVVTTPEIAEVLTRRN----------------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQN 378 (480)
Q Consensus 325 ~~g~G~pig~v~~~~~~~~~l~~~~----------------------~~~t~~~~~~~~aaa~a~L~~i~~~~----~~~ 378 (480)
.+.+|.++|++++++++++.+.... ...+.+.|+++++++.++++.+.+++ ..+
T Consensus 221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~ 300 (390)
T 1elu_A 221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ 300 (390)
T ss_dssp TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888999999999888776421 11233457788888888888775543 455
Q ss_pred HHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669 379 NAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI 455 (480)
Q Consensus 379 ~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 455 (480)
+.+++.+++.+.|+++ +.+..+ ++.|.++.+++.... ....+.+.|.++||++.++. ..+++||
T Consensus 301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~~~-~~~~iRi 367 (390)
T 1elu_A 301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIA-DPDCIRA 367 (390)
T ss_dssp HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEET-TTTEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEecC-CCCeEEE
Confidence 5566666666666553 222222 456788888773211 14568888899999998874 3478999
Q ss_pred eCCCCCCHHHHHHHHHHHHHH
Q 011669 456 TPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~ 476 (480)
+++...+++++++++++|+++
T Consensus 368 s~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 368 CCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ECCTTCCHHHHHHHHHHHTTC
T ss_pred ecccCCCHHHHHHHHHHHHhh
Confidence 999899999999999998753
No 95
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=9e-29 Score=251.20 Aligned_cols=333 Identities=19% Similarity=0.192 Sum_probs=232.9
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~ 171 (480)
||++|+||.++.. ..+|+ +|+|.+++.+++.+..... ..| ..+...+++++|+++++. .+.+ +.++|++++
T Consensus 44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i-~~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAAL-VFSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEE-EESCHHHHH
T ss_pred CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEE-EECCcHHHH
Confidence 7899999987542 12333 7899999999998743211 112 346789999999999975 3455 457788899
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
..+++++....+++.|++..+.|++..... ... |...+.+|. +| .++++++++...
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~-~~~------------g~~~~~v~~-------~d----~~~le~~l~~~~ 175 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGI-KRN------------AGPKRIFRH-------ND----VAHLRELIAADD 175 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHH-HHS------------CCCEEEECT-------TC----HHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHH-HHc------------CCeEEEEcC-------CC----HHHHHHHHHhhc
Confidence 999886532235577888887776554332 221 222222221 12 577888887543
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc--CccccCCCcccccccCC----Ccceeeeccc
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGV----VPDIVTMAKG 325 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t--gfgr~G~~~~~~~~~~~----~pDivt~sK~ 325 (480)
++++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .||++| ..+. ...++ .+.+.+|||+
T Consensus 176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~ 249 (401)
T 2bwn_A 176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA 249 (401)
T ss_dssp TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence 247889999999999998876 9999999999999999999998 356565 2222 23333 3334489999
Q ss_pred cc-cCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 326 IG-NGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 326 ~g-~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
++ .| ||+++++++++.+.... ...+.+.++++++++.++|+.+++. +..++++++.+++++.|+++ .+.
T Consensus 250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 324 (401)
T 2bwn_A 250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP 324 (401)
T ss_dssp TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence 98 35 88999998887765321 1123345678899999999987653 67788888888888888876 333
Q ss_pred ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVM 473 (480)
Q Consensus 400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l 473 (480)
.+ ...|.++++.+. .......+.+.|+ ++||.+.++..+ .+++||+++..+|++|+++++++|
T Consensus 325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 22 234557787762 2234567888886 789999876432 258999999889999999999999
Q ss_pred HHHHhh
Q 011669 474 DYSLSK 479 (480)
Q Consensus 474 ~~~l~~ 479 (480)
++++++
T Consensus 394 ~~~~~~ 399 (401)
T 2bwn_A 394 DLLWAR 399 (401)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 998765
No 96
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=2e-29 Score=252.69 Aligned_cols=327 Identities=14% Similarity=0.115 Sum_probs=230.5
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a 178 (480)
+.+|||.++... ++ .+|+|++|+.+++... ..|++....+++++|+++++.+.++|++++||++|++.+++..
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNENP--FG-TPPKAIECLRQNANKA----HLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCCT--TC-SCHHHHHHHHHHGGGT----TSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCCC--CC-CCHHHHHHHHHHHHhh----ccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 678999888654 44 7899999999988743 2344443478999999999776789999999999999999876
Q ss_pred HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258 (480)
Q Consensus 179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v 258 (480)
.. ++++|++.+++|++........ |...+.+|. . ..+. ...+++++.++ .++++|
T Consensus 103 ~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~-~----~~~~-~d~~~l~~~l~----~~~~~v 157 (365)
T 3get_A 103 LN--SKNAFLQAGVTFAMYEIYAKQC-------------GAKCYKTQS-I----THNL-DEFKKLYETHK----DEIKLI 157 (365)
T ss_dssp CC--TTCEEEECSSCCTHHHHHHHHH-------------TCEEEECSS-S----SCCH-HHHHHHHHHTT----TTEEEE
T ss_pred hC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEec-C----CCCC-CCHHHHHHHhC----CCCCEE
Confidence 43 6789999999998776544332 222333322 0 0233 33677777775 378888
Q ss_pred EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc--cCCCccc-c---cccCCCcceeeeccccc-cCcc
Q 011669 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWG-F---EAHGVVPDIVTMAKGIG-NGIP 331 (480)
Q Consensus 259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr--~G~~~~~-~---~~~~~~pDivt~sK~~g-~G~p 331 (480)
+++.+++++|.+. +.+.+++|.++| ++|+++|+||+|++|.+ .+..... . +..+....+.++||.++ +|+|
T Consensus 158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 235 (365)
T 3get_A 158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR 235 (365)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence 8877788888876 555566666666 67999999999998763 2211111 1 22344445568999998 8999
Q ss_pred ccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669 332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410 (480)
Q Consensus 332 ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~ 410 (480)
+||+++++++++.+.... .+++.|+++++++.++|+..+. ++..++.+++.+++++.|++ ++ +...++.|.+
T Consensus 236 ~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~ 308 (365)
T 3get_A 236 IGYGIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF 308 (365)
T ss_dssp CEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred eEEEEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence 999999999988876533 3467899999999988873210 22333444444444444444 33 3345677888
Q ss_pred EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+++.+... ....+.+.|.++||++.++..+ .+++||+++ +++|+++++++|+++++
T Consensus 309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 309 ITYFFDEK---------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EEEECSSS---------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EEEECCCC---------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence 88877321 2567888899999999987655 489999954 89999999999998863
No 97
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=6.2e-30 Score=255.97 Aligned_cols=317 Identities=14% Similarity=0.118 Sum_probs=222.4
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ 177 (480)
.+++|||.+|. +.+|+. |.| ++ . ....|+.+...+++++|+++++.+.++|++++||+||++.+++.
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~----~~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~ 94 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--TQ----Q----TLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA 94 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--CC----C----CTTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCCC-HhH--hh----h----hhccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence 35789999887 456874 566 21 1 12345555578899999999977777899999999999999997
Q ss_pred HHhhcCC-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 178 ARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 178 ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
+.. ++ ++|++.+++||++...+... |...+.+|.. ..|..| .+++++.++ +++
T Consensus 95 ~~~--~g~d~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~ 148 (356)
T 1fg7_A 95 FCE--PGKDAILYCPPTYGMYSVSAETI-------------GVECRTVPTL--DNWQLD----LQGISDKLD-----GVK 148 (356)
T ss_dssp HCC--TTTCEEEECSSSCTHHHHHHHHH-------------TCEEEECCCC--TTSCCC----HHHHHTSCT-----TEE
T ss_pred HhC--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeeCC--CCCCCC----HHHHHHHhc-----CCC
Confidence 643 45 89999999999977655433 2222222221 123334 456655542 567
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCccccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPLGA 334 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pig~ 334 (480)
+|++.+.+|++|.+. +.+++++|.++|+ ||+++|+||+|++|+... .++.. +.++....+.++||.+| +|+|+||
T Consensus 149 ~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 225 (356)
T 1fg7_A 149 VVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGF 225 (356)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEE
T ss_pred EEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEE
Confidence 777777788888774 7788999999999 999999999999887432 33332 33344455668999999 8999999
Q ss_pred cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEecccee
Q 011669 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFL 410 (480)
Q Consensus 335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~ 410 (480)
+++++++++.+.... .+|+.|+++++++.++|+... -++..+++++.++++.+.|++ ++. ....++.|++
T Consensus 226 ~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~ 299 (356)
T 1fg7_A 226 TLANEEVINLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNY 299 (356)
T ss_dssp EEECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSE
T ss_pred EEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeE
Confidence 999999988776532 456789999999998886422 122333444444455444443 442 2334567888
Q ss_pred EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec-cCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK-GGFY--GNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
+++++. ....+.+.|.++||++.+ +..+ .+++||+++ +++|+++++++|+++
T Consensus 300 ~~~~~~-----------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 300 ILARFK-----------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp EEEEET-----------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred EEEECC-----------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 888873 145688888999999998 5333 368999965 689999999998763
No 98
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=8e-31 Score=267.30 Aligned_cols=343 Identities=13% Similarity=0.050 Sum_probs=226.8
Q ss_pred CCCEEEeccCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE--eC
Q 011669 97 NGRRYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--TN 165 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f--~~ 165 (480)
+|+.++||..|.+....||. +|.|.+++.+++.+... ...| +.....+++++|+++++. +.++|+| |+
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~ 106 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence 36778999998865445554 48999999888732111 1123 344567788888887732 4578999 99
Q ss_pred CHHHHHHHHHHHHHhhcCC-----ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHH
Q 011669 166 SGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (480)
Q Consensus 166 sGseA~~~Alk~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (480)
||++|++.++++++...++ +.|++.+++||++...+...... .+..++.. ....|..| .
T Consensus 107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~ 170 (412)
T 1ajs_A 107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L 170 (412)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence 9999999999876655566 89999999999977655443221 01122210 00112223 5
Q ss_pred HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC--CCcccccccCCCcc
Q 011669 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEAHGVVPD 318 (480)
Q Consensus 241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G--~~~~~~~~~~~~pD 318 (480)
+++++.++... .+++++++...++++|.+ ++.+++++|.++|++||+++|+||+|++|+++| ...+.+......+|
T Consensus 171 ~~l~~~l~~~~-~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 171 QGFLSDLENAP-EFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHSC-TTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-CCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence 77888876432 245666656666677765 588899999999999999999999999998764 12223332211233
Q ss_pred ----eeeecccccc-Ccccccccc---CHHHHHh----hcCCCccccCC-CcHHHHHHHHHHHHHhh--------hhHHH
Q 011669 319 ----IVTMAKGIGN-GIPLGAVVT---TPEIAEV----LTRRNYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQ 377 (480)
Q Consensus 319 ----ivt~sK~~g~-G~pig~v~~---~~~~~~~----l~~~~~~~t~~-~~~~~~aaa~a~L~~i~--------~~~~~ 377 (480)
+.++||.++. |+|+||+++ ++++++. +... +..+++ .|+++++++.++|+... -++..
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 5589999996 999999999 8874433 3221 224555 58999999999987542 13455
Q ss_pred HHHHHHHHHHHHHHHHhHHhcC-ceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669 378 NNAHVVGSYLKERLTALKDKYG-IIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI 455 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~~~~-~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 455 (480)
++++++++++.+.|+++. .+ .+.. ....|+++|+.+ + ...+...+.++||++.++ +||
T Consensus 328 ~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ri 387 (412)
T 1ajs_A 328 DRILSMRSELRARLEALK--TPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLPS------GRI 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTT--CSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCTT------SEE
T ss_pred HHHHHHHHHHHHHHHhhC--CCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecCC------cEE
Confidence 566666666666666541 01 1211 233456666543 1 234555667889999864 599
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
+++. .+++++++++++|+++++++
T Consensus 388 s~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 388 NMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp EGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred Eeee-CCHHHHHHHHHHHHHHHHhc
Confidence 9663 58999999999999998764
No 99
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=5.9e-31 Score=266.62 Aligned_cols=345 Identities=13% Similarity=0.036 Sum_probs=218.1
Q ss_pred EEeCCCCEEEeccCCcccccCC--CCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE
Q 011669 93 LFDENGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF 163 (480)
Q Consensus 93 l~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f 163 (480)
+.+..|+.+|||..|.+..+.| +.+|+|.+++.+++.+. . ...| ......+++++|++++.. +.++|+|
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-c-ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 3344567899999998655555 56799999999987653 1 1223 344567788888877621 2567888
Q ss_pred --eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669 164 --TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (480)
Q Consensus 164 --~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (480)
++||++|++.++++++...+++.|++.+++||++...+...+. ..+.+|......|..| .+
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~ 160 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHTLD----FD 160 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTEEC----HH
T ss_pred EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCC-------------ceEEEecccCCCCCcC----HH
Confidence 9999999999999876555788999999999998766544321 1111111000112223 67
Q ss_pred HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-CCcccccccCCCcc--
Q 011669 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEAHGVVPD-- 318 (480)
Q Consensus 242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-~~~~~~~~~~~~pD-- 318 (480)
++++.++.. ..+++++++...+|++|.+ ++.+++++|.++|++||+++|+||+|++|++.| ...+.+......+|
T Consensus 161 ~l~~~l~~~-~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2q7w_A 161 ALINSLNEA-QAGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHTTC-CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence 888888642 1246677767777777875 578899999999999999999999999987653 01222222211122
Q ss_pred --eeeeccccc-cCcccccccc---CHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh------h--hHHHHHH
Q 011669 319 --IVTMAKGIG-NGIPLGAVVT---TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ------K--DKLQNNA 380 (480)
Q Consensus 319 --ivt~sK~~g-~G~pig~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~------~--~~~~~~~ 380 (480)
+.++||.+| +|+|+||+++ +++ +++.+.......+.+.|+++++++.++|+... + +...+++
T Consensus 239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 318 (396)
T 2q7w_A 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI 318 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 458999999 7999999996 553 44444321122233458999999988886430 0 1223344
Q ss_pred HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC 460 (480)
Q Consensus 381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~ 460 (480)
++..+++.+.|+++.....+.......|+++|+.+ + ...+.+.+.++||++.++ +||+++.
T Consensus 319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~~~- 379 (396)
T 2q7w_A 319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVAS------GRVNVAG- 379 (396)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-
T ss_pred HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecCC------ceEEEee-
Confidence 44455555555443100001111223466666543 1 134666777899999863 6999874
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011669 461 FTKEDADYLVDVMDYSL 477 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l 477 (480)
.|++++++++++|++++
T Consensus 380 ~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 380 MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CCTTTHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 49999999999998763
No 100
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.97 E-value=6.1e-30 Score=259.98 Aligned_cols=335 Identities=15% Similarity=0.102 Sum_probs=227.2
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccC-ChHHHHHHHHHHHhC--C-CCCCEEEEeCCHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYL-NHAIADFAEALASKM--P-GNLKVVFFTNSGTEAN 171 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~-~~~~~~l~e~L~~~~--~-~~~~~v~f~~sGseA~ 171 (480)
|+.+|||..|... + ..+|.|.+++.+++++..+. ...|. .....+++++|++++ + .+.++|++++|+++++
T Consensus 32 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDTT--Q-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCCC--C-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCCC--C-CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 6789999888654 3 36899999999998765321 12342 345688999999984 4 4567899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+.+++++ .+++.|++.+++|++........ +.. .+..++.. ..+.+..| +++ .
T Consensus 109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~-g~~---------~~~~~~~~--~~~~~~~~-------l~~----~- 161 (400)
T 3asa_A 109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLT-GAK---------EIIALPCL--QENAFFPE-------FPE----D- 161 (400)
T ss_dssp HHHHHHH---CSSCEEEEEESCCHHHHHHHHHT-TCS---------EEEEEECC--GGGTTCCC-------CCT----T-
T ss_pred HHHHHHc---CCCCEEEECCCCcHHHHHHHHHc-CCc---------ceEecccc--hhcCcccC-------hhh----c-
Confidence 9876543 46789999999999976543322 211 01222211 11112111 111 0
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC----CCcceeeeccccc
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG----VVPDIVTMAKGIG 327 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~----~~pDivt~sK~~g 327 (480)
+++++|++++.+|++|.+ ++.+++++|.++|++||+++|+||+|++|++.|.........+ ....+.+|||.+|
T Consensus 162 -~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 239 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239 (400)
T ss_dssp -CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred -cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence 356778877778888876 4788999999999999999999999999877662122222222 2334668999998
Q ss_pred -cCccccccccCHHH-------HHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669 328 -NGIPLGAVVTTPEI-------AEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY 398 (480)
Q Consensus 328 -~G~pig~v~~~~~~-------~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~ 398 (480)
+|+|+||+++++++ ++.+.......++ +.|+++++++.++|+....++..++++++.+++++.|+++
T Consensus 240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 89999999999887 5544322233445 5789999999988876433466777788888888877764
Q ss_pred CceeeEec-cceeEEEE-EecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHH
Q 011669 399 GIIGDVRG-RGFLLGVE-FVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVD 471 (480)
Q Consensus 399 ~~~~~v~g-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~ 471 (480)
++ ....+ .|+++|++ +..... ...+.+.|++ +||++.++..+ .+++||+ +..++++++++++
T Consensus 316 g~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~ 384 (400)
T 3asa_A 316 GF-EVFGGEHAPYLWVKPTQANIS--------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACE 384 (400)
T ss_dssp TC-EEEECSSSSEEEEECCCTTCC--------TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHH
T ss_pred CC-eeeCCCCceEEEEeccCCCCC--------HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHH
Confidence 32 22333 47788888 532110 1246666664 59999987543 4689999 5789999999999
Q ss_pred HHHHHHhh
Q 011669 472 VMDYSLSK 479 (480)
Q Consensus 472 ~l~~~l~~ 479 (480)
+|++++++
T Consensus 385 ~l~~~~~~ 392 (400)
T 3asa_A 385 RLQMAPAL 392 (400)
T ss_dssp HHHC----
T ss_pred HHHHHHHh
Confidence 99988764
No 101
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=9e-30 Score=259.85 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=223.6
Q ss_pred CEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCC------------CCCCEEEEe
Q 011669 99 RRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------------GNLKVVFFT 164 (480)
Q Consensus 99 ~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~------------~~~~~v~f~ 164 (480)
+.+|||..|.+.. +-.+.+|.|.+++.+++.+.. ...|. .....++++++++++. .+.++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence 5689998887642 113678999999999987632 11232 2234556666665554 356789999
Q ss_pred CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244 (480)
Q Consensus 165 ~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le 244 (480)
+||++|++.+++.+.. +++.|++.+++||++....... |...+.+|......|..| .++++
T Consensus 111 ~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~ 171 (416)
T 1bw0_A 111 SGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----LDEIR 171 (416)
T ss_dssp SHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----HHHHH
T ss_pred CChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHc-------------CcEEEEeecCcccCCCCC----HHHHH
Confidence 9999999999997642 5689999999999876543322 222222211111112223 57787
Q ss_pred HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC----CcccccccCCC---c
Q 011669 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS----HFWGFEAHGVV---P 317 (480)
Q Consensus 245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~----~~~~~~~~~~~---p 317 (480)
+.++. +++++++...++++|.+ .+++++++|.++|++||+++|+||+|++|.++|. .+..+...+.. .
T Consensus 172 ~~l~~----~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 246 (416)
T 1bw0_A 172 RLKDD----KTKLLIVTNPSNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV 246 (416)
T ss_dssp HHCCT----TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred HHhcc----CCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence 77752 44555444447778876 5788999999999999999999999999877662 12222222222 2
Q ss_pred ceeeeccccc-cCccccccccCHH--HHHhhcCC---CccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Q 011669 318 DIVTMAKGIG-NGIPLGAVVTTPE--IAEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK 388 (480)
Q Consensus 318 Divt~sK~~g-~G~pig~v~~~~~--~~~~l~~~---~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~ 388 (480)
.+.++||.++ +|+|+||++++++ +++.+... ....+++.|+++++++.++|+.+.+ ++..++++++.+++.
T Consensus 247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (416)
T 1bw0_A 247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY 326 (416)
T ss_dssp EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 2347899987 6999999998763 33333211 1124678899999999999874322 223344444455555
Q ss_pred HHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEEEEeCCCCCCHH
Q 011669 389 ERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVFRITPPLCFTKE 464 (480)
Q Consensus 389 ~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~ 464 (480)
+.|+ +++.+..+.+ .|+++++.+..... +.......+.+.| .++||++.++..+ .+++||++ ..+++
T Consensus 327 ~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e 397 (416)
T 1bw0_A 327 NHIG----ECIGLAPTMPRGAMYLMSRIDLEKY---RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVE 397 (416)
T ss_dssp HHHT----TSTTEEECCCCBTTEEEEEECGGGB---SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHH
T ss_pred HHHH----hCCCCcccCCCeeEEEEEeCCHHHc---CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHH
Confidence 4444 3433433333 47788887742100 0001135577777 4889999987544 37899996 47899
Q ss_pred HHHHHHHHHHHHHhh
Q 011669 465 DADYLVDVMDYSLSK 479 (480)
Q Consensus 465 ~id~~l~~l~~~l~~ 479 (480)
++++++++|.+++++
T Consensus 398 ~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 398 VYREAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 102
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=1.3e-28 Score=249.76 Aligned_cols=323 Identities=14% Similarity=0.086 Sum_probs=223.9
Q ss_pred CCCCHHHHHHHHHHHHhcc---cccc----ccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHh--hcC
Q 011669 114 GHCHPYVVDSIVNQIKRIQ---HSTV----LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARL--YTG 183 (480)
Q Consensus 114 Gh~~p~v~~A~~~~~~~~~---~~~~----~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~--~~~ 183 (480)
|+.+|+|.+|+.+++.+.. +... ....+...+++++|+++++. +.++|+|++||++|++.+++.++. ..+
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~ 112 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 112 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCC
Confidence 4788999999999998752 1110 01345678999999999986 567899999999999999998752 346
Q ss_pred CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669 184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI 263 (480)
Q Consensus 184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi 263 (480)
+++|++.+++||+........... .|...+.+|... .+..| .+++++.++ +++++|+++++
T Consensus 113 gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~--~~~~d----~~~l~~~l~----~~~~~v~~~~~ 173 (406)
T 1kmj_A 113 GDNIIISQMEHHANIVPWQMLCAR---------VGAELRVIPLNP--DGTLQ----LETLPTLFD----EKTRLLAITHV 173 (406)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHH---------HTCEEEEECBCT--TSCBC----GGGHHHHCC----TTEEEEEEESB
T ss_pred CCEEEEecccchHHHHHHHHHHHh---------CCCEEEEEecCC--CCCcC----HHHHHHHhc----cCCeEEEEeCC
Confidence 789999999999875432211100 011121121111 11123 456777774 36899999999
Q ss_pred CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHH
Q 011669 264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEI 341 (480)
Q Consensus 264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~ 341 (480)
++++|.+.+ +++|.++|++||+++|+||+|+. |... +.... ..+|++ +++|.+|. ..+|++++++++
T Consensus 174 ~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~--~~~d~~~~s~~K~~g~-~G~G~~~~~~~~ 242 (406)
T 1kmj_A 174 SNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA--LDCDFYVFSGHKLYGP-TGIGILYVKEAL 242 (406)
T ss_dssp CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH--HTCSEEEEEGGGTTSC-TTCEEEEECHHH
T ss_pred CccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc--cCCCEEEEEchhccCC-CCcEEEEEeHHH
Confidence 999998876 99999999999999999999973 3321 12222 246765 68999952 228999999999
Q ss_pred HHhhcCCCcc---------------------ccCCCcHHHHHHHH-HHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHH
Q 011669 342 AEVLTRRNYF---------------------NTFGGNPVCTAAGH-AVLKVIQKD---KLQNNAHVVGSYLKERLTALKD 396 (480)
Q Consensus 342 ~~~l~~~~~~---------------------~t~~~~~~~~aaa~-a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~ 396 (480)
++.+.....+ .+.+.+++.+++++ ++++.+.++ ++.++.+++.+++.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 320 (406)
T 1kmj_A 243 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV-- 320 (406)
T ss_dssp HHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 9887654321 12345666666666 778876543 55666666777777666553
Q ss_pred hcCceeeEec--cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------C--CCEEEEeCCCCCCHH
Q 011669 397 KYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------Y--GNVFRITPPLCFTKE 464 (480)
Q Consensus 397 ~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--~~~iRi~p~~~~t~~ 464 (480)
+.+..... .|.++.+.+. .. ....+.+.|.++||.+.++.. + .+++||+++..+|++
T Consensus 321 --~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~ 389 (406)
T 1kmj_A 321 --PDLTLYGPQNRLGVIAFNLG-KH--------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE 389 (406)
T ss_dssp --TTEEEESCTTCCSEEEEEET-TC--------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHH
T ss_pred --CCeEEecCCCcCCEEEEEEC-CC--------CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHH
Confidence 32333333 6777777652 10 135677888999999987642 1 478999999889999
Q ss_pred HHHHHHHHHHHHHhh
Q 011669 465 DADYLVDVMDYSLSK 479 (480)
Q Consensus 465 ~id~~l~~l~~~l~~ 479 (480)
|+++++++|+++++.
T Consensus 390 ~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 390 EVDRLVTGLQRIHRL 404 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 103
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=1.2e-30 Score=264.19 Aligned_cols=339 Identities=14% Similarity=0.076 Sum_probs=225.2
Q ss_pred CCCEEEeccCCcccccCC--CCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC-CC--CCCEEEE--eCCHH
Q 011669 97 NGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-PG--NLKVVFF--TNSGT 168 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~-~~--~~~~v~f--~~sGs 168 (480)
.|..+|||..|.+..+.| +.+|.|.+++.+++.+. . ...|. .....+++++|++++ .. +.++|+| ++||+
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~ 101 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-T-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT 101 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-c-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence 356689999998755555 67899999999987652 1 12232 344567777777775 22 4578999 99999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
+|++.++++++.+.++++|++.+++||++...+...+. .+..++.. ....++.| .+++++.++
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~ 164 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA 164 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence 99999999877655778999999999998765544322 11122211 00112223 677888887
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccccc-CCCcc---eeeec
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPD---IVTMA 323 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~~~-~~~pD---ivt~s 323 (480)
.. +..++++++.+.+|++|.+ ++.+++++|.++|++||+++|+||+|++|+++|. ..+.+... ...++ +.++|
T Consensus 165 ~~-~~~~~~~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 242 (394)
T 2ay1_A 165 AA-KKGDMVLLHGCCHNPTGAN-LTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp TC-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred hC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence 43 2246777778888888876 5788999999999999999999999999876530 11122211 11233 34789
Q ss_pred cccc-cCcccccccc---CHHHHHhhcCC---CccccC-CCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q 011669 324 KGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTF-GGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL 387 (480)
Q Consensus 324 K~~g-~G~pig~v~~---~~~~~~~l~~~---~~~~t~-~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~l 387 (480)
|.+| +|+|+||+++ ++++++.+... ....++ +.|+++++++.++|+... -++..+++++..+++
T Consensus 243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 322 (394)
T 2ay1_A 243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL 322 (394)
T ss_dssp TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999998 67654433211 112334 348899999998887431 123445555566666
Q ss_pred HHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHH
Q 011669 388 KERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~i 466 (480)
.+.|+++.... .+.... ..|+++|+++ + ...+.+.|.++||++.++ +||+++ .++++++
T Consensus 323 ~~~L~~~~~~~-~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i 382 (394)
T 2ay1_A 323 AGELRDLSGSD-RFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVGD------SRINIA-GLNDNTI 382 (394)
T ss_dssp HHHHHHHHTSS-TTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTH
T ss_pred HHHHHhcCCCC-CeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecCC------CeEEee-cCCHhhH
Confidence 66665542100 121122 3477777654 1 134667777899999864 599977 5799999
Q ss_pred HHHHHHHHHH
Q 011669 467 DYLVDVMDYS 476 (480)
Q Consensus 467 d~~l~~l~~~ 476 (480)
++++++|+++
T Consensus 383 ~~~~~~l~~~ 392 (394)
T 2ay1_A 383 PILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999875
No 104
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=7.4e-29 Score=250.68 Aligned_cols=342 Identities=13% Similarity=0.078 Sum_probs=225.0
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE 172 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~ 172 (480)
+|+.++||..|... ++ .+|.+.+++.+.+...... ...+..+...++++.+.+..+ .+.++|++|+||++|++
T Consensus 29 ~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 35567888877653 33 4689999999888653211 111123344455555544443 24578999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (480)
Q Consensus 173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (480)
.+++... .+++.|++.+++|+++....... |...+.+|......|..| .++++++++
T Consensus 106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---- 162 (385)
T 1b5p_A 106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT---- 162 (385)
T ss_dssp HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC----
T ss_pred HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC----
Confidence 9998764 36789999999998765443322 222222222111123333 566776664
Q ss_pred CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc--CCCcceeeeccccc-cC
Q 011669 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIG-NG 329 (480)
Q Consensus 253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~--~~~pDivt~sK~~g-~G 329 (480)
.++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|..|...| ....+... +....+.+|||.++ .|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (385)
T ss_dssp TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCEEEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCcc
Confidence 2566666655567777664 77889999999999999999999999886654 33222222 22223448999999 79
Q ss_pred ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH---hhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV---IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~---i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
+|+||+++++++++.+.......+++.+++++.++.++|+. ..+ ++..+++++..+++.+.|+++ .... ..
T Consensus 241 ~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~ 316 (385)
T 1b5p_A 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKA--VR 316 (385)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCB--CC
T ss_pred cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee--cC
Confidence 99999999999988876544456778889999998888863 221 234455555566666666554 2221 12
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
...|+++++.+.... .....+.+.|.++||.+.+|..+ .+++||+.. .+++++++++++|.+++++
T Consensus 317 ~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 317 PSGAFYVLMDTSPIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLGR 384 (385)
T ss_dssp CSBTTEEEEECTTTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC--
T ss_pred CCeeEEEEEecCCCC-------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 233556676663110 11456788888999999987554 378999954 7999999999999887653
No 105
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=4.5e-28 Score=244.62 Aligned_cols=321 Identities=17% Similarity=0.092 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHHHhcccccccc--CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-----------
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----------- 181 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~----------- 181 (480)
..+|++.+++.+++.........+ ..+...++++++++.++.+.++++|++||++|++.+++.++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 567999999999887642211222 2455678999999999877789999999999999999988764
Q ss_pred cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEc
Q 011669 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261 (480)
Q Consensus 182 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~e 261 (480)
++++.|++.+++|++.......... .+..++... .+..| .+++++.++.. ++++|+++
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~ 178 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMMDL-----------EYIYAPIKE----DYTID----EKFVKDAVEDY---DVDGIIGI 178 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHHTC-----------EEEEECBCT----TSSBC----HHHHHHHHHHS---CCCEEEEE
T ss_pred CCCeEEEECCcchhHHHHHHHHcCc-----------eeEEEeeCC----CCcCC----HHHHHHHHhhc---CCeEEEEE
Confidence 2478899999999885544433211 122232211 12123 67888888742 56788888
Q ss_pred ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc--cCC--------CcccccccCCCcceeeeccccccCcc
Q 011669 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGS--------HFWGFEAHGVVPDIVTMAKGIGNGIP 331 (480)
Q Consensus 262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr--~G~--------~~~~~~~~~~~pDivt~sK~~g~G~p 331 (480)
++++++|.+.+ +++|.++|++||+++|+||+|+++.. ++. ..+.+.. ++.+.+.+++|.+++|+|
T Consensus 179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence 88888998865 99999999999999999999987532 320 0233334 555566678899888899
Q ss_pred ccccccCHH-HHHhhcC---CCc--------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 332 LGAVVTTPE-IAEVLTR---RNY--------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 332 ig~v~~~~~-~~~~l~~---~~~--------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
+|+++++++ +.+.+.. ... +.+.+.+++++.++++.+....-++..++.+++.+++.+.|+++ .+.
T Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 331 (397)
T 3f9t_A 254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK 331 (397)
T ss_dssp CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence 999988655 4444321 110 12223456666666666543333556777778888888888776 333
Q ss_pred ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
.+. .+.+.++++.+. . ...+.+.|.++||++.++.. .+++||+++..+|++++++++++|+++++
T Consensus 332 ~~~--~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~~~~-~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 332 PVI--EPILNIVAIEDE--------D---YKEVCKKLRDRGIYVSVCNC-VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp BSS--CCSSSEEEEECT--------T---HHHHHHHHHHTTCBCEECSS-SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEc--CCCccEEEEEeC--------C---HHHHHHHHHhCCeEEeccCC-CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 222 244566666542 1 45788899999999988753 57999999988999999999999999875
No 106
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=1.8e-28 Score=251.25 Aligned_cols=310 Identities=14% Similarity=0.108 Sum_probs=212.6
Q ss_pred CChHHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669 139 LNHAIADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 139 ~~~~~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
..+...++++.+.+..+... ++|++|+|+++|++.+++.+.. +++.|++.+++|++........
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~----- 152 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPL----- 152 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGG-----
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHc-----
Confidence 34555666666665544332 5899999999999999997643 5689999999999876554332
Q ss_pred ccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--------CCceEEEEEcc-cCCCCcceeCCCChHHHH
Q 011669 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--------SGHVAGFLSES-IQGVGGIIELAPGYLPAV 280 (480)
Q Consensus 210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--------~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l 280 (480)
|...+.+|... .+.| .++|+++++... ..++++|+++| .+|++|.+ .+.+.+++|
T Consensus 153 --------g~~~~~v~~~~---~~~d----~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l 216 (425)
T 2r2n_A 153 --------GCNIINVASDE---SGIV----PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEI 216 (425)
T ss_dssp --------TCEEEEECEET---TEEC----HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHH
T ss_pred --------CCEEEEeCcCC---CCCC----HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHH
Confidence 22222222110 0112 578888886321 13577887765 67888876 478889999
Q ss_pred HHHHHHhCCEEEEcccccCccccCCC---cccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCc
Q 011669 281 YKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN 357 (480)
Q Consensus 281 ~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~ 357 (480)
.++|++||+++|+||+|++|.+.|.. +..++..+....+.+|||.+++|+|+||+++++++++.+.......+++.|
T Consensus 217 ~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~ 296 (425)
T 2r2n_A 217 YELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPS 296 (425)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSC
T ss_pred HHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999988776622 222333344455678999999999999999999999888765556678899
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHhHHh-cCce-e-eEeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSY---LKERLTALKDK-YGII-G-DVRGRGFLLGVEFVTDRQLKTPAKAETLY 431 (480)
Q Consensus 358 ~~~~aaa~a~L~~i~~~~~~~~~~~~~~~---l~~~L~~l~~~-~~~~-~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~ 431 (480)
+++++++.++|+.+.++.+.++++++.++ .++.|.+..++ ++.+ . ..+..|+++|+++..... . ...
T Consensus 297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~-----~--~~~ 369 (425)
T 2r2n_A 297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND-----V--KEL 369 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC-----C--HHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC-----H--HHH
Confidence 99999999999865433333333333332 23333333333 3322 2 234568888998843211 0 123
Q ss_pred HHHHHHHcCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 432 IMDKMKEMGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 432 ~~~~l~~~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.+.|.++||++.++..+ .+++||+++. .+++++++++++|++++++
T Consensus 370 ~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 370 IEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 567788999999987543 3689999763 6999999999999998865
No 107
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=1.8e-29 Score=253.20 Aligned_cols=333 Identities=15% Similarity=0.100 Sum_probs=232.6
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-------ccccccCChHHHHHHHH-HHHhCCCCCCEEEEeCCHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-------HSTVLYLNHAIADFAEA-LASKMPGNLKVVFFTNSGTE 169 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-------~~~~~~~~~~~~~l~e~-L~~~~~~~~~~v~f~~sGse 169 (480)
+-.|||+.+ +.++.+|+|.+|+.+++.... +....+..+...+++++ |+++++.+ .++|++||++
T Consensus 8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE 80 (371)
T ss_dssp CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence 346777633 235788999999999887642 11223456778899999 99999765 8999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
|++.+++.+. .++++|++.+++||+....... . |...+.+|.+....+.-| .+++++.+++
T Consensus 81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~-~------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~~ 141 (371)
T 2e7j_A 81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAER-A------------GLNIALVPKTDYPDYAIT----PENFAQTIEE 141 (371)
T ss_dssp HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHH-T------------TCEEEEECCCCTTTCCCC----HHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHH-c------------CCeEEEeecccCCCCCcC----HHHHHHHHHh
Confidence 9999999874 3678999999999987766322 1 222222221011112223 6778888864
Q ss_pred cCC-CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669 250 GTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI 326 (480)
Q Consensus 250 ~~~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~ 326 (480)
... +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ +....++ +|++ +++|++
T Consensus 142 ~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK~~ 211 (371)
T 2e7j_A 142 TKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHKSM 211 (371)
T ss_dssp HTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHHHS
T ss_pred hcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCcCC
Confidence 211 47889999999999998876 899999999999999999999853 222 1222333 5655 578999
Q ss_pred ccCccccccccCHHHHHh-hcCCCc--cc-----cCCCcHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHhHH
Q 011669 327 GNGIPLGAVVTTPEIAEV-LTRRNY--FN-----TFGGNPVCTAAGHAVLKVIQKDKLQNNA--HVVGSYLKERLTALKD 396 (480)
Q Consensus 327 g~G~pig~v~~~~~~~~~-l~~~~~--~~-----t~~~~~~~~aaa~a~L~~i~~~~~~~~~--~~~~~~l~~~L~~l~~ 396 (480)
++|.|+|++++++++++. +..... .. ++..++..++++.++++.+.+ ++.+++ +++.+++.+.|+++
T Consensus 212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~-- 288 (371)
T 2e7j_A 212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL-- 288 (371)
T ss_dssp SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--
Confidence 988899999999998777 665433 22 556778888888888887765 666777 88888888888775
Q ss_pred hcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc-------CcCCCEEE-EeCCCC-CCHHHHH
Q 011669 397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG-------GFYGNVFR-ITPPLC-FTKEDAD 467 (480)
Q Consensus 397 ~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~~~~~iR-i~p~~~-~t~~~id 467 (480)
.+..+....+.+.++++.+. ....+.+.|.++||.+.+. +...+++| |+++.. +++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~ 357 (371)
T 2e7j_A 289 GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVD 357 (371)
T ss_dssp TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHH
T ss_pred CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHH
Confidence 22222111114678888762 2466888888999998761 11146899 998877 8999999
Q ss_pred HHHHHHHHHHhhC
Q 011669 468 YLVDVMDYSLSKM 480 (480)
Q Consensus 468 ~~l~~l~~~l~~~ 480 (480)
+++++|+++++++
T Consensus 358 ~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 358 YVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998763
No 108
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.96 E-value=9.7e-30 Score=260.27 Aligned_cols=344 Identities=13% Similarity=0.027 Sum_probs=232.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHH--HHHHhcccccccc--CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH--HH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIV--NQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANE--LA 174 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~--~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~--~A 174 (480)
.|||..|.+...+.+.+|.|.+++. +.+. .......| ......+|+++|+++++.+.++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4788877776444455667888875 3333 11112334 2455789999999999877789999999999997 78
Q ss_pred HHHHHhh-cC--------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669 175 IMMARLY-TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (480)
Q Consensus 175 lk~ar~~-~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (480)
++..... .+ ++.|++.+++|++......... ...+.+|.... +.| .++|++
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~ 165 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG-------------FELLTVDMQSD---GPD----VDAVER 165 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHH
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEeccCCCC---CCC----HHHHHH
Confidence 8765542 33 5899999999998776544332 11121111100 012 678888
Q ss_pred HHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHH-HHhCCEEEEcccccCccccC---C---Ccccc----ccc
Q 011669 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTG---S---HFWGF----EAH 313 (480)
Q Consensus 246 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~tgfgr~G---~---~~~~~----~~~ 313 (480)
++++ ..++++|+++| .+|++|.+. +.+.+++|.++| ++||+++|+||+|..+...+ . .++.+ +..
T Consensus 166 ~l~~--~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (423)
T 3ez1_A 166 LAGT--DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP 242 (423)
T ss_dssp HHHS--CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred HHhh--CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence 8852 23788998886 677788775 677799999999 99999999999998533222 0 11111 123
Q ss_pred CCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHH
Q 011669 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV-------VGSY 386 (480)
Q Consensus 314 ~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~-------~~~~ 386 (480)
+....+.||||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+.+ .+.+.+++++ ..+.
T Consensus 243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 321 (423)
T 3ez1_A 243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEY-PGGLEGLMRDHAAIIAPKFRA 321 (423)
T ss_dssp TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHH
Confidence 4445577999997789999999999999988877666678889999999999888741 0222222322 3333
Q ss_pred HHHHHHHhHHhcC-cee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-c-------CCCEEEEe
Q 011669 387 LKERLTALKDKYG-IIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-F-------YGNVFRIT 456 (480)
Q Consensus 387 l~~~L~~l~~~~~-~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~ 456 (480)
+.+.|.+.....+ .+. .....|+++|+++... ....+.+.|.++||++.+++ . ..+++||+
T Consensus 322 l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis 392 (423)
T 3ez1_A 322 VDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLA 392 (423)
T ss_dssp HHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEEC
T ss_pred HHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEE
Confidence 3333333222222 122 2345688899988432 14567888999999999832 2 24789999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Q 011669 457 PPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 457 p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
++.. +++++++++++|.+++++
T Consensus 393 ~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 393 PTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CSSS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHHHHHH
Confidence 8755 999999999999998864
No 109
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=6.3e-29 Score=255.01 Aligned_cols=344 Identities=13% Similarity=0.085 Sum_probs=227.4
Q ss_pred eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cccccC-ChHHHHHHHHHHHhC----CCCCCEEEEeCCH
Q 011669 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG 167 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~-~~~~~~l~e~L~~~~----~~~~~~v~f~~sG 167 (480)
+.+|+.+|||..|.+.. ..+|.|.+|+.+++.+... ....|. .....+|++++++++ +.+.++|+|++|+
T Consensus 52 ~~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGDTTE---PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCCCCS---CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCCCCC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 44578999999987653 6789999999999986532 112232 334567777777764 5567789999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc-CCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
++++..+..++ .+++.|++.+++|++....+........+..... ...+..++... ...+.. ++++
T Consensus 129 ~~al~~l~~l~---~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~l~~- 195 (432)
T 3ei9_A 129 KCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFFP-------DLST- 195 (432)
T ss_dssp HHHHHHHHHHH---CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTSC-------CGGG-
T ss_pred HHHHHHHHHHc---CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCcC-------Chhh-
Confidence 99998743322 3678999999999998776654433221110000 01222232211 111111 1221
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeee
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTM 322 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~ 322 (480)
..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|...+ ...++... +....+.||
T Consensus 196 -----~~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~ 268 (432)
T 3ei9_A 196 -----VGRTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASF 268 (432)
T ss_dssp -----CCCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEES
T ss_pred -----CCCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecc
Confidence 12566677667788888764 77789999999999999999999999886655 33232221 233446689
Q ss_pred ccccc-cCccccccccCHHH--------HHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 011669 323 AKGIG-NGIPLGAVVTTPEI--------AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKER 390 (480)
Q Consensus 323 sK~~g-~G~pig~v~~~~~~--------~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~ 390 (480)
||.+| +|+|+||+++++++ ++.+.......+++.++++++++.++|+.... ++..++++++.+++++.
T Consensus 269 SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (432)
T 3ei9_A 269 SNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDT 348 (432)
T ss_dssp HHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999999999887 55555433345566889999998888752111 33455556666666666
Q ss_pred HHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHH
Q 011669 391 LTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKE 464 (480)
Q Consensus 391 L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~ 464 (480)
|+++ ++ .... ..|.++|+.+... ....+.+.|++ .||++.++..+ .+++||+ +..+++
T Consensus 349 L~~~----g~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e 412 (432)
T 3ei9_A 349 FTSL----GY-DVYGGKNAPYVWVHFPNQ---------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRE 412 (432)
T ss_dssp HHHT----TC-CEEECSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHH
T ss_pred HHHC----Cc-eecCCCcceEEEEECCCC---------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHH
Confidence 6554 32 2233 3577888887411 13456666655 59999987443 4789999 577999
Q ss_pred HHHHHHHHHHHHH
Q 011669 465 DADYLVDVMDYSL 477 (480)
Q Consensus 465 ~id~~l~~l~~~l 477 (480)
++++++++|++--
T Consensus 413 ~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 413 NILEACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 110
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=5e-28 Score=243.83 Aligned_cols=329 Identities=16% Similarity=0.119 Sum_probs=231.6
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ 177 (480)
+.|+|..+ -++.+|+|.+|+.+++.. +... ...+...++++++++.++.+ .+++++++||++|++.+++.
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 46777643 246789999998776542 1111 12466788999999988765 56799999999999999997
Q ss_pred HHhhcCCceEEEEcCCcccc--cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 178 ARLYTGCNDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 178 ar~~~~~~~ii~~~~~yhG~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+. .++++|++.+++||+. ...+.. . |...+.++... .+..| .++|++.+++ .+++
T Consensus 91 l~--~~gd~vl~~~~~~~~~~~~~~~~~-~------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~--~~~~ 147 (386)
T 2dr1_A 91 GV--SKGGKVLVTIIGAFGKRYKEVVES-N------------GRKAVVLEYEP--GKAVK----PEDLDDALRK--NPDV 147 (386)
T ss_dssp HS--CTTCEEEEEESSHHHHHHHHHHHH-T------------TCEEEEEECCT--TCCCC----HHHHHHHHHH--CTTC
T ss_pred hh--cCCCeEEEEcCCchhHHHHHHHHH-h------------CCceEEEecCC--CCCCC----HHHHHHHHhc--CCCC
Confidence 63 3678999999999983 222111 1 22222222111 12234 6788888853 1367
Q ss_pred EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCcccc
Q 011669 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLG 333 (480)
Q Consensus 256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig 333 (480)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ ... +.... ..+|++++ +|.++++.++|
T Consensus 148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~---~~~~~--~~~di~~~s~sK~~~~~~g~G 217 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD---IKFDK--WGLDVVFSSSQKAFGVPPGLA 217 (386)
T ss_dssp CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC---CCTTT--TTCSEEEEETTSTTCCCSSCE
T ss_pred cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc---ccccc--cCCcEEEEeccccccCCCceE
Confidence 89999999999998865 999999999999999999999743 221 22222 24577755 59999766699
Q ss_pred ccccCHHHHHhhcCC------------------CccccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHH
Q 011669 334 AVVTTPEIAEVLTRR------------------NYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERL 391 (480)
Q Consensus 334 ~v~~~~~~~~~l~~~------------------~~~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L 391 (480)
++++++++++.+... ....+++.|+++++++.++|+.+.++ +..++.+++.+++.+.|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L 297 (386)
T 2dr1_A 218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297 (386)
T ss_dssp EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999988876421 12345678899999999999877543 56777888888888888
Q ss_pred HHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHH
Q 011669 392 TALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADY 468 (480)
Q Consensus 392 ~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~ 468 (480)
+++ .+...... ...+.++++.+... .....+.+.|.++||.+.++.. ..+++||+++..+|++++++
T Consensus 298 ~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~ 367 (386)
T 2dr1_A 298 REI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQE 367 (386)
T ss_dssp HHT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHH
T ss_pred HHc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence 775 33322110 01467778876321 1146688889999999988642 24789999988899999999
Q ss_pred HHHHHHHHHhh
Q 011669 469 LVDVMDYSLSK 479 (480)
Q Consensus 469 ~l~~l~~~l~~ 479 (480)
++++|++++++
T Consensus 368 ~~~~l~~~~~~ 378 (386)
T 2dr1_A 368 MLDNLREVINE 378 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 111
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.5e-27 Score=243.06 Aligned_cols=337 Identities=14% Similarity=0.117 Sum_probs=231.8
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---c-cccccC---ChHHHHHHHHHHHhCCC-CCCEEEEeCCH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H-STVLYL---NHAIADFAEALASKMPG-NLKVVFFTNSG 167 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~-~~~~~~---~~~~~~l~e~L~~~~~~-~~~~v~f~~sG 167 (480)
.+|+.+++|..+.. ++.+|.|.+++.+++.+.. | ....|. .+...+++++|+++++. +.+++++++||
T Consensus 24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 36777888876654 3788999999999988742 1 111222 35678999999999976 56789999999
Q ss_pred HHHHHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669 168 TEANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (480)
Q Consensus 168 seA~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (480)
++|++.+++.++. ..++++|++.+++||+........... .|...+.+|.. ..+..| .+++++
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~--~~~~~d----~~~l~~ 164 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK---------TGAVLKFVQLD--EQESFD----LEHFKT 164 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH---------HCCEEEEECBC--TTSSBC----HHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHh---------cCcEEEEeccC--CCCCcC----HHHHHH
Confidence 9999999998731 346789999999999854221111000 01222222211 112223 577887
Q ss_pred HHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--c
Q 011669 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--A 323 (480)
Q Consensus 246 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--s 323 (480)
.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +.....+ +|++++ +
T Consensus 165 ~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~di~~~s~s 230 (420)
T 1t3i_A 165 LLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID--CDWLVASGH 230 (420)
T ss_dssp HCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT--CSEEEEEGG
T ss_pred hhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---CchhhcC--CCEEEEehh
Confidence 774 36899999999999998876 9999999999999999999997 33221 1222233 677755 5
Q ss_pred cccccCccccccccCHHHHHhhcCCCcc--------------------ccCCCcHHHHHHHHH-HHHHhhh---hHHHHH
Q 011669 324 KGIGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTFGGNPVCTAAGHA-VLKVIQK---DKLQNN 379 (480)
Q Consensus 324 K~~g~G~pig~v~~~~~~~~~l~~~~~~--------------------~t~~~~~~~~aaa~a-~L~~i~~---~~~~~~ 379 (480)
|.++. .++|++++++++++.+...... .+.+.+++.++++++ +++.+.+ +++.++
T Consensus 231 K~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 309 (420)
T 1t3i_A 231 KMCAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY 309 (420)
T ss_dssp GTTSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhcCC-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 96653 3389999999999888654321 123466676666665 6777654 456667
Q ss_pred HHHHHHHHHHHHHHhHHhcCceeeEe------ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----
Q 011669 380 AHVVGSYLKERLTALKDKYGIIGDVR------GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----- 448 (480)
Q Consensus 380 ~~~~~~~l~~~L~~l~~~~~~~~~v~------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----- 448 (480)
.+++.+++.+.|+++ +.+..+. +.|.++++.+.. . ....+.+.|.++||.+.++..
T Consensus 310 ~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 310 EVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeeccccchHH
Confidence 777777777777664 2222222 247777777621 0 135677888999999988721
Q ss_pred ---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 449 ---Y--GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 449 ---~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+ .+++||+++..++++++++++++|++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 468999999888999999999999998765
No 112
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=3e-28 Score=246.49 Aligned_cols=328 Identities=17% Similarity=0.126 Sum_probs=229.6
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAI 175 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Al 175 (480)
+.+.|+|..+. ++.+|+|.+|+.+++.. +.. ....+...++++++++.++.+.+ +++|++||++|++.++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 34678885432 47889999999876543 111 11235678899999999877667 8999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCccc--ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669 176 MMARLYTGCNDIISLRNAYHG--NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~ 253 (480)
+.+. .++++|++.+++||+ +....... |...+.+|... .+..| .++|++.++..
T Consensus 103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~~--- 158 (393)
T 1vjo_A 103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-------------GADVRTISKPW--GEVFS----LEELRTALETH--- 158 (393)
T ss_dssp HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-------------TCEEEEEECCT--TCCCC----HHHHHHHHHHH---
T ss_pred Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-------------CCceEEEecCC--CCCCC----HHHHHHHHhhC---
Confidence 9874 367899999999998 33221111 22222222111 12233 67888888632
Q ss_pred ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCcc
Q 011669 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIP 331 (480)
Q Consensus 254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~p 331 (480)
++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... .+.....+|++++ +|+++++.|
T Consensus 159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~ 228 (393)
T 1vjo_A 159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPG 228 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSS
T ss_pred CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC-----CcccccCccEEEEcCcccccCCCc
Confidence 5678899999999998875 8899999999999999999998 66432 2222345787755 599987569
Q ss_pred ccccccCHHHHHhhcCC-----Cc--------------cccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Q 011669 332 LGAVVTTPEIAEVLTRR-----NY--------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK 388 (480)
Q Consensus 332 ig~v~~~~~~~~~l~~~-----~~--------------~~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~ 388 (480)
+|++++++++++.+... .. ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.
T Consensus 229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999998877321 00 2234 6788999999999987644 356777888888888
Q ss_pred HHHHHhHHhcCceeeEec--cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC--CCEEEEeC-CCCCC
Q 011669 389 ERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY--GNVFRITP-PLCFT 462 (480)
Q Consensus 389 ~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p-~~~~t 462 (480)
+.|+++ .+.... ..+ .+.++++.+... .....+.+.|.++ ||.+.++..+ .+++||++ ++..+
T Consensus 309 ~~L~~~--g~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~ 377 (393)
T 1vjo_A 309 ERLEDI--GLSLHV-EKEYRLPTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR 377 (393)
T ss_dssp HHHHHT--TCCBSS-CGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred HHHHHc--CCcccC-CccccCCcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence 888775 333222 111 234556655211 1145688888887 9999887532 57899994 56778
Q ss_pred HHHHHHHHHHHHHHHh
Q 011669 463 KEDADYLVDVMDYSLS 478 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~ 478 (480)
++++++++++|+++++
T Consensus 378 ~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 378 KESVDQLIPALEQVLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8899999999998864
No 113
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=8.7e-28 Score=241.73 Aligned_cols=331 Identities=16% Similarity=0.138 Sum_probs=225.7
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~ 173 (480)
.|||+.++ |+.+|+|.+|+.+++.+.. .... ........+++++|+++++.+.+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 68887653 4789999999999987631 1110 1123556889999999997666789999999999999
Q ss_pred HHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 174 AIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 174 Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+++.++. ..++++|++.+++||+.......+.. .|...+.+|... .+..| .++|++.++
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 137 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM----------KGFKVKYVPVDS--RGVVK----LEELEKLVD--- 137 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH----------TTCEEEECCBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHh----------cCCEEEEEccCC--CCccC----HHHHHHHhC---
Confidence 9998763 13678999999999987554422111 022222222211 12123 577877774
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC--CEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG 327 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g 327 (480)
+++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|+ ||... +.+. ...+|++++| |.+|
T Consensus 138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~--~~~~di~~~s~sK~~g 206 (384)
T 1eg5_A 138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLE--KLEVDYASFSAHKFHG 206 (384)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCT--TTCCSEEEEEGGGGTS
T ss_pred -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCch--hcCCCEEEecHHHhcC
Confidence 36889999999999998876 899999999999 9999999997 65432 2222 2247877655 9876
Q ss_pred c-CccccccccCHHH--HHhhcCC---CccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 328 N-GIPLGAVVTTPEI--AEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 328 ~-G~pig~v~~~~~~--~~~l~~~---~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
. | +|++++++++ ...+... ....+++.|+++++++.++|+.+.+ ++..++.+++.+++.+.|++. .+.
T Consensus 207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 282 (384)
T 1eg5_A 207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH 282 (384)
T ss_dssp CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence 3 5 7999999876 2222221 1124567889999999999987543 356666777777777777652 121
Q ss_pred ceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------------------CCEEEEeC
Q 011669 400 IIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------------GNVFRITP 457 (480)
Q Consensus 400 ~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~p 457 (480)
.+....+ .+.++++.+... ....+.+.|.++||.+.++..+ .+++||++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 353 (384)
T 1eg5_A 283 IITPLEISLPNTLSVSFPNI---------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL 353 (384)
T ss_dssp ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC
Confidence 1111111 245566655311 1356788889999999885322 36899998
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 011669 458 PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 458 ~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+..+|++|+++++++|++++++
T Consensus 354 ~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 354 CKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998875
No 114
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.96 E-value=2.7e-29 Score=257.12 Aligned_cols=343 Identities=13% Similarity=0.070 Sum_probs=229.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHH-hccccccccCCh-HHHHHHHHHHHhCCCCCCEEEEeCCHHHHH--HHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAIM 176 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~~~-~~~~l~e~L~~~~~~~~~~v~f~~sGseA~--~~Alk 176 (480)
+|||..|.+...+-..+|.+.+++.+++. ........|... ...+|++.++++++.+.++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 68988887642111345678887765431 111112234433 378899999999887778999999999998 56666
Q ss_pred HHHhh--cC--------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 177 MARLY--TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 177 ~ar~~--~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
..... .| ++.|++.+++|+++........ ...+.+|....+ .| .+++++.
T Consensus 114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~g---~d----~~~l~~~ 173 (422)
T 3d6k_A 114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG-------------FEMINVPMTDEG---PD----MGVVREL 173 (422)
T ss_dssp HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETTE---EC----HHHHHHH
T ss_pred HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC-------------CEEEecCCCCCC---CC----HHHHHHH
Confidence 55431 01 3369999999998876554332 112221111000 12 6778888
Q ss_pred HHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHH-HhCCEEEEcccccC--ccccCCCcccc-------cccCC
Q 011669 247 IDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAG--FARTGSHFWGF-------EAHGV 315 (480)
Q Consensus 247 i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~tg--fgr~G~~~~~~-------~~~~~ 315 (480)
++. .++++|++.| .+|++|.+ .+.+++++|.++|+ +||+++|+||+|.. |+..|.....+ +..+.
T Consensus 174 l~~---~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (422)
T 3d6k_A 174 VKD---PQVKGMWTVPVFGNPTGVT-FSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR 249 (422)
T ss_dssp HTS---TTEEEEEECCSSCTTTCCC-CCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred Hhc---CCCeEEEEcCCCCCCCCCC-CCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence 752 3678888555 67778876 48888999999999 99999999999974 65544212122 23455
Q ss_pred CcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHH
Q 011669 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL-------QNNAHVVGSYLK 388 (480)
Q Consensus 316 ~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~-------~~~~~~~~~~l~ 388 (480)
.+++.+|||..++|+|+||+++++++++.+.......+++.|+++++++.++|+.. +.+ .+.+++..+++.
T Consensus 250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~ 327 (422)
T 3d6k_A 250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--AGLKAHMLKHAASLAPKFERVL 327 (422)
T ss_dssp EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHH
Confidence 66677999996689999999999999988876555567888999999998888631 222 223333444555
Q ss_pred HHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-C-------CCEEEEeCCC
Q 011669 389 ERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-Y-------GNVFRITPPL 459 (480)
Q Consensus 389 ~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-------~~~iRi~p~~ 459 (480)
+.|.+....++.+.. ....|+++|+++... ....+.+.|.++||++.+++. + .+++||+++.
T Consensus 328 ~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~ 398 (422)
T 3d6k_A 328 EILDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL 398 (422)
T ss_dssp HHHHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS
T ss_pred HHHHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC
Confidence 555443333333332 234578889988421 134577788999999998432 2 4789999776
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 011669 460 CFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 460 ~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++++++++++|++++++
T Consensus 399 -~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 399 -PPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp -SCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764
No 115
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=2.4e-29 Score=257.85 Aligned_cols=345 Identities=14% Similarity=0.076 Sum_probs=230.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHH--HHHHHhccccccccC-ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH--HHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAI 175 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~--~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~--~~Al 175 (480)
.+||..|.+...+.+.++.+.+++ .+++.........|. .....+|+++|+++++.+.++|++|+|+++|+ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 578888776554333334566665 444443222223344 34568899999999887778999999999999 5787
Q ss_pred HHHHhhcC----------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669 176 MMARLYTG----------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (480)
Q Consensus 176 k~ar~~~~----------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (480)
+......+ ++.|++.+++|++......... ...+.+|....+ .| .++|++
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~g---~d----~~~l~~ 174 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG-------------FEMISVPMNEDG---PD----MDAVEE 174 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEETTE---EC----HHHHHH
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEEeCCCCCC---CC----HHHHHH
Confidence 76554212 7899999999998765544332 222222211000 12 577888
Q ss_pred HHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHH-HHhCCEEEEcccccCccccCCC-----cccc----cccC
Q 011669 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSH-----FWGF----EAHG 314 (480)
Q Consensus 246 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~tgfgr~G~~-----~~~~----~~~~ 314 (480)
+++ ..++++|+++| .+|++|.+. +.+.+++|.++| ++||+++|+||+|+++.+.+.. ++.. +..+
T Consensus 175 ~l~---~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (427)
T 3ppl_A 175 LVK---NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN 250 (427)
T ss_dssp HTT---STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred HHh---cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence 874 24788999886 677888775 677789999999 9999999999999985444311 1111 1335
Q ss_pred CCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---h--hHHHHHHHHHHHHHHH
Q 011669 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAHVVGSYLKE 389 (480)
Q Consensus 315 ~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~--~~~~~~~~~~~~~l~~ 389 (480)
..+++.||||.+++|+|+||+++++++++.+.......+++.+++++.++.+.|+... + ....+.+++..+.+.+
T Consensus 251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566779999977899999999999999888766666788899999998888775311 0 1122233333344444
Q ss_pred HHHHhHHhcCcee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-c-------CCCEEEEeCCCC
Q 011669 390 RLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-F-------YGNVFRITPPLC 460 (480)
Q Consensus 390 ~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~p~~~ 460 (480)
.|.+.....+.+. .....|+++|+++... ....+.+.|.++||++.+++ . ..+++||+++..
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP 401 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence 4433222222222 2334588888887431 14567788999999999843 1 247899998654
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 011669 461 FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l~~ 479 (480)
++++|++++++|.+++++
T Consensus 402 -~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 402 -PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 116
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=1.6e-28 Score=250.53 Aligned_cols=347 Identities=11% Similarity=0.032 Sum_probs=218.0
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeC
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTN 165 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~ 165 (480)
..++||..|.+.. .|.+.+++.+++.+.. .....|. .....+|++++++++ +.+.++|+||+
T Consensus 31 ~~~i~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 105 (417)
T 3g7q_A 31 PGAIMLGGGNPAH-----IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105 (417)
T ss_dssp -CCEECSCCCCCC-----CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCceEecCcCCCC-----CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 4578888776542 3544455444443321 0011233 344667777777765 45678999999
Q ss_pred CHHHHHHHHHHHHHhhc---CCceEEEE-cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669 166 SGTEANELAIMMARLYT---GCNDIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (480)
Q Consensus 166 sGseA~~~Alk~ar~~~---~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (480)
||+||++.+++.+.... ++.+|++. +++||++............ .+......+.. ...|..| .+
T Consensus 106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~d----~~ 173 (417)
T 3g7q_A 106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS-------ARPNIELLPEG-QFKYHVD----FE 173 (417)
T ss_dssp CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE-------CCCEEEEEGGG-EEEEECC----GG
T ss_pred CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc-------ccCcccccCCc-ccccccC----HH
Confidence 99999999999875421 11278886 9999998765533211000 01111111110 0001112 23
Q ss_pred HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc--cccCCCcce
Q 011669 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF--EAHGVVPDI 319 (480)
Q Consensus 242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~--~~~~~~pDi 319 (480)
+++ + ..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|..+. .+..+... ...+....+
T Consensus 174 ~l~--~----~~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 174 HLH--I----GEETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GCC--C----CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred Hhc--c----ccCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence 444 2 23678888887788888765 77779999999999999999999997531 12011111 112334446
Q ss_pred eeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHh
Q 011669 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD-----KLQNNAHVVGSYLKERLTAL 394 (480)
Q Consensus 320 vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~-----~~~~~~~~~~~~l~~~L~~l 394 (480)
.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.|+...-. .+.+++++..+.+.+.|.+.
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY 325 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899954479999999999999998877666678888999999998888642211 13334445555555555543
Q ss_pred HHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----------CCEEEEeCCCCCCH
Q 011669 395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----------GNVFRITPPLCFTK 463 (480)
Q Consensus 395 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~ 463 (480)
...+++.......|+++|+++.... .....+.+.|.++||++.++..+ .+++||+++. ++
T Consensus 326 l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~ 396 (417)
T 3g7q_A 326 LSEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EP 396 (417)
T ss_dssp CCTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CH
T ss_pred cccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CH
Confidence 2222222233456888888874311 11456888889999999987543 4689999874 99
Q ss_pred HHHHHHHHHHHHHHhh
Q 011669 464 EDADYLVDVMDYSLSK 479 (480)
Q Consensus 464 ~~id~~l~~l~~~l~~ 479 (480)
++|++++++|.+++++
T Consensus 397 ~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 397 DKIEAGVKILAEEIER 412 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 117
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.6e-27 Score=242.87 Aligned_cols=331 Identities=14% Similarity=0.073 Sum_probs=231.6
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc--c---cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV--L---YLNHAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~--~---~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA 170 (480)
+|..|||+.+ .|+.+|+|.+++.+++.+.. +... . ...+...+++++|+++++.+.++|+|++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5789999754 25789999999999987531 1111 1 113667899999999998766789999999999
Q ss_pred HHHHHHHHHhh----cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 171 NELAIMMARLY----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 171 ~~~Alk~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
++.+++.++.. .+++++|++.+.+|+.....+...... . ..|...+.+|. .+++++.
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~-----~~g~~~~~v~~-------------~~~l~~~ 161 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-L-----QQGYTLRLVDS-------------PEELPQA 161 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-H-----CSSCEEEEESS-------------GGGHHHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-h-----cCCceEEEeCc-------------HHHHHHH
Confidence 99999987533 455677777888887654432211000 0 00222222221 2467777
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--cc
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AK 324 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK 324 (480)
++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .+|++++ +|
T Consensus 162 i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~K 227 (416)
T 1qz9_A 162 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTYK 227 (416)
T ss_dssp CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSSS
T ss_pred hC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCcc
Confidence 64 37889999999999998876 9999999999999999999997 54332 122222 3677765 59
Q ss_pred ccccCccc-cccccCHHHHHhhcCCCcc-----------------------ccCCCcHHHHHHHHHHHHHhhh---hHHH
Q 011669 325 GIGNGIPL-GAVVTTPEIAEVLTRRNYF-----------------------NTFGGNPVCTAAGHAVLKVIQK---DKLQ 377 (480)
Q Consensus 325 ~~g~G~pi-g~v~~~~~~~~~l~~~~~~-----------------------~t~~~~~~~~aaa~a~L~~i~~---~~~~ 377 (480)
.+++|.++ |++++++++++.+.....+ ...+.|+.+++++.++|+.+.+ +++.
T Consensus 228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (416)
T 1qz9_A 228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307 (416)
T ss_dssp TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99888888 9999999987766542111 1224578888888889988754 4577
Q ss_pred HHHHHHHHHHHHHHHHhHH--hcCceeeE--eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669 378 NNAHVVGSYLKERLTALKD--KYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVF 453 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~--~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i 453 (480)
++.+++.+++++.|+++.. .+..+... ...+.++++.+. . ...+.+.|.++||++...+ .+++
T Consensus 308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~~~~--~~~l 374 (416)
T 1qz9_A 308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGDYRE--PRIM 374 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECEEET--TTEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEeccCC--CCeE
Confidence 8888888888888877532 22111111 023567777652 1 3568888999999986533 5789
Q ss_pred EEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669 454 RITPP-LCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 454 Ri~p~-~~~t~~~id~~l~~l~~~l~~ 479 (480)
||+++ +.+|++|+++++++|++++++
T Consensus 375 Ris~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 375 RFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 99987 688999999999999998864
No 118
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=1.2e-27 Score=239.01 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=227.9
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ 177 (480)
+++||..| + + ..+|+|.+|+.+++ .|....+.++...+++++|+++++.. .++++|++||++|++.+++.
T Consensus 4 ~~~~~~~g-p---~-~~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 4 NYLLLTPG-P---L-TTSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp -CEECSSS-S---C-CCCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred ccccccCC-C---c-CCCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 36788777 2 2 27899999998743 23221122366788999999998622 24799999999999999997
Q ss_pred HHhhcCCceEEEEcCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 178 ARLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 178 ar~~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
++. ++++|+++++.||+.... .....+. .+..++.+. .+..| .++++++++.. .+++
T Consensus 76 ~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~ 133 (366)
T 1m32_A 76 ALG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE----VARPD----VQAIDAILNAD--PTIS 133 (366)
T ss_dssp SCC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT----TSCCC----HHHHHHHHHHC--TTCC
T ss_pred hcC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC----CCCCC----HHHHHHHHhcC--CCeE
Confidence 753 567888888888875321 1111111 122232211 11133 67888888742 2466
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGA 334 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~ 334 (480)
+|++...++++|.+.+ +++|.++|++||+++|+||+|+ ++..+ +.... ..+|++ +++|+++++.++|+
T Consensus 134 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~ 203 (366)
T 1m32_A 134 HIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAF 203 (366)
T ss_dssp EEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEE
T ss_pred EEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEE
Confidence 7767777778888876 9999999999999999999997 44332 12222 236766 57899987777899
Q ss_pred cccCHHHHHhhcCCCc------------------cccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHH
Q 011669 335 VVTTPEIAEVLTRRNY------------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLT 392 (480)
Q Consensus 335 v~~~~~~~~~l~~~~~------------------~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~ 392 (480)
+++++++++.+..... ...++.|+.+++++.++|+.+.+. ...++.+++.+++++.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 283 (366)
T 1m32_A 204 VIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMR 283 (366)
T ss_dssp EEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHH
Confidence 9999999887754310 013577888898899999877543 466777778888888887
Q ss_pred HhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-CCCEEEEeCCCCCCHHHHHHHH
Q 011669 393 ALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 393 ~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~~~id~~l 470 (480)
++ .+..+... ...|.++++.+.... ......+.+.|.++||.+.++.. ..+++||+++..++++++++++
T Consensus 284 ~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~ 355 (366)
T 1m32_A 284 AL--GFNTLLDDELHSPIITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALL 355 (366)
T ss_dssp HT--TCCBSSCGGGBCSSEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHH
T ss_pred HC--CCeeccCchhcCceEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHH
Confidence 75 33322211 124567888773200 01246688889999999988743 3578999999889999999999
Q ss_pred HHHHHHHhhC
Q 011669 471 DVMDYSLSKM 480 (480)
Q Consensus 471 ~~l~~~l~~~ 480 (480)
++|+++++++
T Consensus 356 ~~l~~~~~~~ 365 (366)
T 1m32_A 356 TAIRTAMYWT 365 (366)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 119
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.7e-28 Score=252.56 Aligned_cols=351 Identities=12% Similarity=0.075 Sum_probs=222.6
Q ss_pred CEEE-eccCCcccccCCCCCHHHHHHHHHHHHhcccc-------c------cccC-ChHHHHHHHHHHHhC------CCC
Q 011669 99 RRYL-DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-------T------VLYL-NHAIADFAEALASKM------PGN 157 (480)
Q Consensus 99 ~~yl-D~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-------~------~~~~-~~~~~~l~e~L~~~~------~~~ 157 (480)
..+| ||..|.+.. .|.+.+++.+++.+.... . ..|. .....+++++|++++ +.+
T Consensus 31 ~~~i~~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-----IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT 105 (444)
T ss_dssp SSCCEECSCCCCCC-----CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred chhhhccCCCCCCc-----ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 3467 877765532 466666666655543211 1 1232 233556777776665 456
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHhhcCCc--------------eEEEE-cCCcccccccccccccCCCccccccCCCeeEe
Q 011669 158 LKVVFFTNSGTEANELAIMMARLYTGCN--------------DIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222 (480)
Q Consensus 158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~--------------~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (480)
.++|+||+||++|++.+++.+.. +++ .||+. .++|+++......... ....+...+
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~ 176 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH-------FAAVLPHID 176 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC-------EEECCCEEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccch-------hhccCceEE
Confidence 78899999999999999987643 222 46654 8999987765421110 000122222
Q ss_pred cCCCCc-CC--CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC
Q 011669 223 LNPDPY-RG--VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299 (480)
Q Consensus 223 ~~p~~~-~~--~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg 299 (480)
+++... .+ .|+.| .++|+++++.. ..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|..
T Consensus 177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~ 250 (444)
T 3if2_A 177 EVTHDGEEGFFKYRVD----FEALENLPALK-EGRIGAICCSRPTNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGM 250 (444)
T ss_dssp EEEETTEEEEEEEECC----HHHHHTCHHHH-TTCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred ecccccccCccccCCC----HHHHHHHHHhc-CCCceEEEeCCCCCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 222100 00 11123 56777664321 23677788776678888765 777899999999999999999999974
Q ss_pred ccccCCCcccc--cccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---
Q 011669 300 FARTGSHFWGF--EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD--- 374 (480)
Q Consensus 300 fgr~G~~~~~~--~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~--- 374 (480)
+. .+..+... ...+...++.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.++.....
T Consensus 251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 329 (444)
T 3if2_A 251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS 329 (444)
T ss_dssp TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence 31 11011111 1234455677999985579999999999999988877666677888999999988888643211
Q ss_pred --HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---
Q 011669 375 --KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--- 449 (480)
Q Consensus 375 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--- 449 (480)
...++++++.+.+++.|.+.....++.......|+++|+.+.... .....+.+.|.++||++.++..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~ 402 (444)
T 3if2_A 330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPG 402 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCC
Confidence 123334444445555554432222222223456888898884311 11456788899999999987543
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 ---------GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 ---------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||+++. ++++|++++++|.+++++
T Consensus 403 ~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 403 VDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp CCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence 1589999875 999999999999998864
No 120
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=4.1e-27 Score=232.95 Aligned_cols=318 Identities=15% Similarity=0.103 Sum_probs=225.1
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
+.+++|||.++.. ++| .+|.|.+++.+++... ..|+++...+++++|+++++.+.++|+|++|++++++.+++
T Consensus 14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 4567899988764 455 6799999999877653 34567788999999999998777789999999999999998
Q ss_pred HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
.+ +++.|++.+++|++........ |+..+.+|... .|+.| .++++++ .+++
T Consensus 87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~------~~~~ 137 (337)
T 3p1t_A 87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV------SRDD 137 (337)
T ss_dssp HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC------CTTE
T ss_pred hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh------cCCC
Confidence 65 6789999999998866543322 23333322111 12223 4455433 2456
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV 335 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v 335 (480)
++++...++++|.+.+ ++++.++|+++++ +|+||+|.+|+..+ .. .....+....+.++||.+| .|+|+||+
T Consensus 138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~-~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 210 (337)
T 3p1t_A 138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFR-AR-GLAYGENELVFRSFSKSYGLAGLRLGAL 210 (337)
T ss_dssp EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCS-SS-CCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccc-cc-ccccCCCEEEEeeCchhccCcchheEEE
Confidence 7777777888998887 8899999999997 55699999887554 21 1122233334558999999 89999999
Q ss_pred ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669 336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (480)
Q Consensus 336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 414 (480)
++++++++.+.... .+++.++++++++.++|+.... ++..+++.+..+++.+.|+++ + +....+.|.++++.
T Consensus 211 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~ 283 (337)
T 3p1t_A 211 FGPSELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE 283 (337)
T ss_dssp ECCHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred EeCHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence 99999998887643 4567788888888888763211 233444444555555555543 3 23345667777776
Q ss_pred EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
... ...+.+.|.++||.+.++..+ .+++||++. +++++++++++|+++++
T Consensus 284 ~~~-----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 284 NAA-----------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CTT-----------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred cCC-----------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 521 135677888999999987654 379999944 89999999999998764
No 121
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.6e-27 Score=243.45 Aligned_cols=333 Identities=14% Similarity=0.100 Sum_probs=225.2
Q ss_pred eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH--hccc-c------ccccCChHHHHHHHHHHHhCCCCCCEEEEeC
Q 011669 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RIQH-S------TVLYLNHAIADFAEALASKMPGNLKVVFFTN 165 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~--~~~~-~------~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~ 165 (480)
+.++..|||+.++ |+.+|+|.+++.+++. +... . ...+..+...+++++|++.++.+.++|+|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 4567789997654 4789999999999887 3211 1 1112235668899999999987777899999
Q ss_pred CHHHHHHHHHHHHHh-hc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669 166 SGTEANELAIMMARL-YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243 (480)
Q Consensus 166 sGseA~~~Alk~ar~-~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l 243 (480)
||++|++.+++.+.. +. +++.|++.+++|++.......+.. .|+..+.+|... .+..| +++|
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l 156 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQR--NGIID----LKEL 156 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCT--TSCCC----HHHH
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCC--CCccC----HHHH
Confidence 999999999997653 23 478999999999987655433211 122222222211 11123 6778
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA 323 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s 323 (480)
++.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|++ +.. ........+|++++|
T Consensus 157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS 222 (423)
T ss_dssp HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence 88775 37899999999999998876 99999999999999999999863 221 122233457887655
Q ss_pred --cccccCccccccccCHHHHHhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Q 011669 324 --KGIGNGIPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT 392 (480)
Q Consensus 324 --K~~g~G~pig~v~~~~~~~~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~ 392 (480)
|.+| +.++|++++++++++.+..... ..+...++.+++++.++++.+.+ +++.++.+++.+++++.|+
T Consensus 223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9654 4458999999887666654332 23445677888888888887655 4555666666666666664
Q ss_pred HhHHhcCceeeEecc----ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-------------------
Q 011669 393 ALKDKYGIIGDVRGR----GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------------------- 449 (480)
Q Consensus 393 ~l~~~~~~~~~v~g~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------------------- 449 (480)
+ ++.+...... +.++.+.+... ....+.+.|.+ |.+.++..+
T Consensus 302 ~----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 302 D----IEEVYLNGDLEHGAPNILNVSFNYV---------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp T----STTEEEESCSTTBCTTEEEEEETTS---------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred c----CCCEEEeCCccccCCCeEEEEeCCC---------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 4 3333222222 34556655211 13456666665 777665211
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 --GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 --~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||+++..+|++++++++++|++++++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999998764
No 122
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=1.5e-27 Score=243.18 Aligned_cols=338 Identities=14% Similarity=0.029 Sum_probs=211.7
Q ss_pred CCEEEeccCCcccccCCC--CCHHHHHHHHHHHHhc--cccccccCChHHHHHHHHHHHhC-CCCCCEEEEeCCHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGH--CHPYVVDSIVNQIKRI--QHSTVLYLNHAIADFAEALASKM-PGNLKVVFFTNSGTEANE 172 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~l~e~L~~~~-~~~~~~v~f~~sGseA~~ 172 (480)
|+.+|||..|.+..+-|+ .+|.|.+|+.+..... .+....+..+...++++.+.... +.+.++|++|+||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 456788888876332233 4678888876633221 11111222334455555554443 222348999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC-
Q 011669 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT- 251 (480)
Q Consensus 173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~- 251 (480)
.+++.... +++.|++.+++|+++....... |...+.+|.... .|+.| .+++++.++...
T Consensus 116 ~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~-~~~~d----~~~l~~~l~~~~~ 175 (413)
T 3t18_A 116 SAIFSYLD--EGDPLICHDYYWAPYRKICEEF-------------GRNFKTFEFFTD-DFAFN----IDVYKEAIDEGIR 175 (413)
T ss_dssp HHHHHHCC--SSCEEEEESSCCTHHHHHHHHH-------------TCEEEEECCBCT-TSSBC----HHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCEEEECCCCcccHHHHHHHh-------------CCeEEEeeccCC-CCCcC----HHHHHHHHHHHhh
Confidence 99986643 6789999999998876554333 222222222111 13334 567777775310
Q ss_pred CCceEEEEEccc-CCCCcceeCCCChHHHHHHHHH------HhCCEEEEcccccCccccCCCccc--ccccCCCcc---e
Q 011669 252 SGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSHFWG--FEAHGVVPD---I 319 (480)
Q Consensus 252 ~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~tgfgr~G~~~~~--~~~~~~~pD---i 319 (480)
++..+++++++. +|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|+++|..... ....++.++ +
T Consensus 176 ~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (413)
T 3t18_A 176 DSDRIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVV 254 (413)
T ss_dssp HCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEE
T ss_pred cCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEE
Confidence 123446777755 88888775 7777999999999 899999999999999988732211 222344455 2
Q ss_pred e--eeccccc-cCcccccccc---CHHHHHhhcCCCcc---cc-CCCcHHHHHHHHHHHHHhh-----h--hHHHHHHHH
Q 011669 320 V--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF---NT-FGGNPVCTAAGHAVLKVIQ-----K--DKLQNNAHV 382 (480)
Q Consensus 320 v--t~sK~~g-~G~pig~v~~---~~~~~~~l~~~~~~---~t-~~~~~~~~aaa~a~L~~i~-----~--~~~~~~~~~ 382 (480)
+ +|||.++ +|+|+||+++ ++++++.+...... .+ .+.++++++++.++|+... + +.+.+++++
T Consensus 255 ~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 334 (413)
T 3t18_A 255 VAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKS 334 (413)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 2 7999999 8999999998 99998887653221 22 3578888888887775321 1 123344455
Q ss_pred HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462 (480)
Q Consensus 383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 462 (480)
+.+++.+.|+++ ++.......|+++|+++.+ ...+.+.|.++||++.++ ++++||+++.. +
T Consensus 335 ~~~~l~~~l~~~----g~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~g---~~~iRis~~~~-~ 395 (413)
T 3t18_A 335 RADVFVTAAKEN----KLTMIPYFGGFFTFIPTDK-----------AFDIVKDLEKENIFTIPS---AKGIRVAICGV-G 395 (413)
T ss_dssp HHHHHHHHHHHT----TCCCBCCCSSSCEEEECSC-----------HHHHHHHHHHTTEECEEC---SSEEEECTTTS-C
T ss_pred HHHHHHHHHHHc----CCCccCCCceEEEEeCCCC-----------HHHHHHHHHhCCEEEecC---CCceEEEEeeC-C
Confidence 555555555443 2211222335556665411 356778889999999987 47899998744 4
Q ss_pred HHHHHHHHHHHHHHHh
Q 011669 463 KEDADYLVDVMDYSLS 478 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~ 478 (480)
++++ +++|.++++
T Consensus 396 ~~~~---l~~l~~~l~ 408 (413)
T 3t18_A 396 EEKI---PKLVQRLAF 408 (413)
T ss_dssp GGGH---HHHHHHHHH
T ss_pred HHHH---HHHHHHHHH
Confidence 4444 666666654
No 123
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=1.8e-28 Score=250.79 Aligned_cols=339 Identities=16% Similarity=0.064 Sum_probs=220.1
Q ss_pred EEEeccCCcccccCCCCC--HHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCCC------CCC--EEEEeCCHH
Q 011669 100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSGT 168 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~------~~~--~v~f~~sGs 168 (480)
.+|||..|.+..+-|+.+ |.|.+|+.+++++.. ...|. .....++++.+++++.. +.+ +|++|+||+
T Consensus 50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t 127 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT 127 (420)
T ss_dssp SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence 568998887655566766 899999999887621 11222 23345566666655422 345 899999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
+|++.++++.....+++.|++.+++|+++......... .+..++..+. ..++.| .+++++.++
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~~~l~ 190 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDA--KTNGVN----FDGMLAALN 190 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEET--TTTEEC----HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeecc--ccCccC----HHHHHHHHH
Confidence 99999988665555788999999999987655544322 1222222000 111123 678888886
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccc----ccCCCcceeeec
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFE----AHGVVPDIVTMA 323 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~----~~~~~pDivt~s 323 (480)
+. +.+++++++++.+|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ...+.. ..+....+.+||
T Consensus 191 ~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 268 (420)
T 4f4e_A 191 GY-EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFS 268 (420)
T ss_dssp TC-CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECT
T ss_pred hC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCC
Confidence 43 24678888888899999764 788899999999999999999999999987641 122221 122233344799
Q ss_pred cccc-cCcccccccc---CHHHHHhhc----CCCccccCCCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q 011669 324 KGIG-NGIPLGAVVT---TPEIAEVLT----RRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL 387 (480)
Q Consensus 324 K~~g-~G~pig~v~~---~~~~~~~l~----~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~l 387 (480)
|.++ .|+|+||+++ ++++++.+. ......+.+.++++++++.+.|+... -++..++++++++++
T Consensus 269 K~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 348 (420)
T 4f4e_A 269 KSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGL 348 (420)
T ss_dssp TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999863 566554322 11123444567777777777665321 123444555555555
Q ss_pred HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHH
Q 011669 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id 467 (480)
.+.|+++....++....+..|+++|+.+. ...+.+.+.++||++.+++ ||+++ .+++++++
T Consensus 349 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~ 409 (420)
T 4f4e_A 349 VERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG------RICVA-ALNTRNLD 409 (420)
T ss_dssp HHHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-GCCTTTHH
T ss_pred HHHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC------eEEEe-cCCHHHHH
Confidence 55555542111222223445666665541 2456677788999998753 88865 45788899
Q ss_pred HHHHHHHHHHh
Q 011669 468 YLVDVMDYSLS 478 (480)
Q Consensus 468 ~~l~~l~~~l~ 478 (480)
+++++|+++++
T Consensus 410 ~~~~~l~~~l~ 420 (420)
T 4f4e_A 410 VVANAIAAVLK 420 (420)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998863
No 124
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=9e-28 Score=245.27 Aligned_cols=339 Identities=11% Similarity=0.009 Sum_probs=217.3
Q ss_pred CCEEEeccCCcc---cccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCC--CCCC---EEEEeCCHH
Q 011669 98 GRRYLDAFGGIA---TVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP--GNLK---VVFFTNSGT 168 (480)
Q Consensus 98 G~~ylD~~~g~~---~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~--~~~~---~v~f~~sGs 168 (480)
|..+|||..|.+ ...+ ..++.|.+++.+......+ .|. .....++++++++++. .+.+ +|++|+||+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~-~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNL-VFLKTVKEEYLSLSDSEHV---GYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCB-CCCHHHHHHHHTCCHHHHH---SCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCc-cccHHHHHHHHHhcccccC---CCCCCCChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence 446677777754 1122 2567888887654332111 121 2223445555554331 1234 899999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
+|++.+++.... +++.|++.+++|+++....... |...+.+|.... .|+.| .+++++.++
T Consensus 113 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~ 172 (418)
T 3rq1_A 113 GGIHHLIHNYTE--PGDEVLTADWYWGAYRVICSDT-------------GRTLVTYSLFDE-HNNFN----HEAFQNRVN 172 (418)
T ss_dssp HHHHHHHHHHSC--TTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECSBCT-TSSBC----HHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCEEEECCCCchhHHHHHHHc-------------CCEEEEEeeeCC-CCCcC----HHHHHHHHH
Confidence 999999986643 6789999999998877654433 222222222111 12234 567777775
Q ss_pred ccC-CCceEEEEEccc-CCCCcceeCCCChHHHHHHHHH------HhCCEEEEcccccCccccCCC--cccccccCCCcc
Q 011669 249 FGT-SGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSH--FWGFEAHGVVPD 318 (480)
Q Consensus 249 ~~~-~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~tgfgr~G~~--~~~~~~~~~~pD 318 (480)
... ++..++++++.. +|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|+++|.. .+.....++.+|
T Consensus 173 ~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
T 3rq1_A 173 ELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKE 251 (418)
T ss_dssp HHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTT
T ss_pred HhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCC
Confidence 310 124446666654 88888775 7777999999999 899999999999999877621 112223345555
Q ss_pred ---ee--eeccccc-cCcccccccc---CHHHHHhhcCCCcc---cc-CCCcHHHHHHHHHHHHHhh------h--hHHH
Q 011669 319 ---IV--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF---NT-FGGNPVCTAAGHAVLKVIQ------K--DKLQ 377 (480)
Q Consensus 319 ---iv--t~sK~~g-~G~pig~v~~---~~~~~~~l~~~~~~---~t-~~~~~~~~aaa~a~L~~i~------~--~~~~ 377 (480)
++ +|||.++ +|+|+||+++ ++++++.+...... .+ .+.+.++++++.++|+..+ + +.+.
T Consensus 252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 331 (418)
T 3rq1_A 252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY 331 (418)
T ss_dssp EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 32 7999998 7999999999 89998877653211 22 3578888888887775321 0 1233
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeC
Q 011669 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITP 457 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p 457 (480)
++++++.+++.+.|+++ .+.. .....|+++|+++. ....+.+.|.++||++.+++ +++||+.
T Consensus 332 ~~~~~~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~---~~iRis~ 393 (418)
T 3rq1_A 332 QLIRDRADIFKQEAAQV--GLPM--LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIALA---NGIRIAA 393 (418)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCC--CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEECS---SEEEEEG
T ss_pred HHHHHHHHHHHHHHHhc--CCCC--CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecCC---CCeEEEE
Confidence 45555566666666554 2222 22334556666541 13567788899999999874 6899994
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhC
Q 011669 458 PLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 458 ~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
. .++++++++++++|+++++++
T Consensus 394 ~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 394 C-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp G-GSCHHHHTTHHHHHHHHHHHT
T ss_pred e-cCCHHHHHHHHHHHHHHHHHH
Confidence 4 469999999999999998753
No 125
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=1.2e-27 Score=241.50 Aligned_cols=318 Identities=12% Similarity=0.070 Sum_probs=220.4
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y 194 (480)
.+|+|.+|+.+++.. |... ...+...+++++|+++++...+ .|+|++||++|++.+++.+ ..++++|++..++|
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI 108 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence 578999988764321 2111 1245667899999999875444 5999999999999999977 34788999999998
Q ss_pred cccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 195 HGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 195 hG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
||...... ... |.....+|....+. .| .+++++.++. .++++|++++++|++|.+.+
T Consensus 109 ~~~~~~~~~~~~------------g~~~~~~~~~~~~~--~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~- 166 (393)
T 3kgw_A 109 WGMRAAEIADRI------------GARVHQMIKKPGEH--YT----LQEVEEGLAQ---HKPVLLFLVHGESSTGVVQP- 166 (393)
T ss_dssp HHHHHHHHHHHT------------TCEEEEEECCTTCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred hhHHHHHHHHHc------------CCceEEEeCCCCCC--CC----HHHHHHHHhh---CCCcEEEEeccCCcchhhcc-
Confidence 86432111 111 22222222211111 23 6788888864 25788999999999998876
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcCCCc-
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRNY- 350 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~~~~- 350 (480)
+++|+++|++||+++|+||+|+ +| + ..+..+.++ +|+++ ++|+++++.++|++++++++++.+.....
T Consensus 167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~ 237 (393)
T 3kgw_A 167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK 237 (393)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence 8899999999999999999997 33 1 222233333 56665 45999887889999999999888754221
Q ss_pred ----------------------cccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCcee-e-
Q 011669 351 ----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG-D- 403 (480)
Q Consensus 351 ----------------------~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~- 403 (480)
..+++.|+.+++++.++++.+.+ +++.++.+++.+++.+.|+++ .+.... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 315 (393)
T 3kgw_A 238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP 315 (393)
T ss_dssp CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence 12345678888888888887665 456777888888888888776 232211 1
Q ss_pred EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~ 479 (480)
....+.++++.+... ....++.+.|+++ ||++.++.. .++++||++ ++.+|++++++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 316 EIRLPTITTVTVPAG--------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp GGBCSSEEEEECCTT--------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCeEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 122245666765321 1245688888887 999987632 357999998 7778999999999999999875
No 126
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.95 E-value=4.8e-28 Score=245.28 Aligned_cols=338 Identities=14% Similarity=0.064 Sum_probs=217.8
Q ss_pred EEEeccCCcccccCCCCC--HHHHHHHHH-HHHhccccccccC-ChHHHHHHHHHHHhCCC------CCC--EEEEeCCH
Q 011669 100 RYLDAFGGIATVCCGHCH--PYVVDSIVN-QIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSG 167 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~-~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~------~~~--~v~f~~sG 167 (480)
.+|||..|.+..+-|+.+ |+|.+|+.+ ++.... ...|. .....++++++++++.. +.+ +|++|+||
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~ 104 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG 104 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCc
Confidence 478988886544456665 899999998 876521 11222 23445666666665532 356 89999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|++.++++.....+++.|++.+++|++.......... .+..++.. ....++-| .+++++.+
T Consensus 105 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l 167 (397)
T 3fsl_A 105 SGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWY--DEATNGVR----FNDLLATL 167 (397)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCE--ETTTTEEC----HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeee--eccCCcCc----HHHHHHHH
Confidence 999999988665556788999999999987655443321 12222220 00111123 67888888
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Ccccc----cccCCCcceeee
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGF----EAHGVVPDIVTM 322 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~----~~~~~~pDivt~ 322 (480)
++. ..+++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.+|.+.+. ..... +..+....+.+|
T Consensus 168 ~~~-~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 245 (397)
T 3fsl_A 168 KTL-QAGSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSF 245 (397)
T ss_dssp TTC-CTTCEEEECSSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred HhC-CCCCEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecc
Confidence 643 2467888888888888876 4777899999999999999999999999876531 11121 122333445589
Q ss_pred ccccc-cCcccccccc---CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHh------h--hhHHHHHHHHHHHH
Q 011669 323 AKGIG-NGIPLGAVVT---TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGSY 386 (480)
Q Consensus 323 sK~~g-~G~pig~v~~---~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i------~--~~~~~~~~~~~~~~ 386 (480)
||.+| .|+|+||+++ .+++++.+.... ...+.+.++++++++.+.|+.. . -++..++++++.++
T Consensus 246 SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (397)
T 3fsl_A 246 SKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQE 325 (397)
T ss_dssp TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999974 456554332211 1234445677777777666421 1 12344555666666
Q ss_pred HHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHH
Q 011669 387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~i 466 (480)
+.+.|+++....++.......|+++|+.+. ...+.+.|.++||++.+++ ||+++ .+++++|
T Consensus 326 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~------Ris~~-~~~~~~i 386 (397)
T 3fsl_A 326 LVKVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANV 386 (397)
T ss_dssp HHHHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC------EEEGG-GCCTTTH
T ss_pred HHHHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC------eEEEE-ecCHhhH
Confidence 666666542111121122334666665541 2346677788999998864 88864 4477889
Q ss_pred HHHHHHHHHHH
Q 011669 467 DYLVDVMDYSL 477 (480)
Q Consensus 467 d~~l~~l~~~l 477 (480)
++++++|++++
T Consensus 387 ~~~~~~l~~~l 397 (397)
T 3fsl_A 387 QRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 127
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=2.5e-27 Score=239.07 Aligned_cols=333 Identities=14% Similarity=0.084 Sum_probs=225.6
Q ss_pred EEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669 92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171 (480)
Q Consensus 92 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~ 171 (480)
.++|.+++.+.++...++..+++|..++..+.+ .++++++++.++.+ +.++|++|||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~-~~v~~~~sgt~a~ 64 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAE-AAVIIPGSGTYGM 64 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence 467999999999987776667788877665433 34556667777655 6899999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCC----CCcCCCC-CCChHHHHHHHHHH
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP----DPYRGVF-GADGEMYAKDVQDL 246 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p----~~~~~~~-~~d~~~~~~~le~~ 246 (480)
+++++.+ .++++||+++++|||.....+.....-. ..+..++.+ +.++.+| ..| .++++++
T Consensus 65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~~ 130 (379)
T 3ke3_A 65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKFA-------KSSTVLTAERTEDTEAPKPFAPVD----IETAVAK 130 (379)
T ss_dssp HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCCS-------SEEEEEECEESSCCSSCCCEECCC----HHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCCC-------CceEEEeccccccccccCCCCCCC----HHHHHHH
Confidence 9998643 4788999999999997644332211000 011222221 1111111 123 6788888
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccc
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI 326 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~ 326 (480)
++.. ++++|++..+++++|.+. +.+++++|.++|++||+++|+||+|+ | + ..+..+.+++.+.+.+++|++
T Consensus 131 i~~~---~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~l 201 (379)
T 3ke3_A 131 IKED---KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKGW 201 (379)
T ss_dssp HHHH---TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTTT
T ss_pred Hhhc---CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhhc
Confidence 8531 467788888888888664 67899999999999999999999997 3 2 344455567655566677999
Q ss_pred ccCccccccccCHHHHHhhcCCC---c-------------------cccCCCcHHHHHHHHHHHHHhhhh---HHHHHHH
Q 011669 327 GNGIPLGAVVTTPEIAEVLTRRN---Y-------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAH 381 (480)
Q Consensus 327 g~G~pig~v~~~~~~~~~l~~~~---~-------------------~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~ 381 (480)
+++.++|++++++++++.+.... . ..+++.|+..+++..++|+.+.++ +..++.+
T Consensus 202 ~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~ 281 (379)
T 3ke3_A 202 SSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQW 281 (379)
T ss_dssp CSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 88778999999999988775411 1 012366778888888999988764 5667778
Q ss_pred HHHHHHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------CCCEE
Q 011669 382 VVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------YGNVF 453 (480)
Q Consensus 382 ~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~i 453 (480)
++.+++++.|+++ .+....... ..+.+..+.. + .. .....+.|.++||++.++.. .++.+
T Consensus 282 ~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~--~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~l 349 (379)
T 3ke3_A 282 ELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RD--DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTF 349 (379)
T ss_dssp HHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CH--HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEE
T ss_pred HHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Cc--chHHHHHHHHCCeEEeCCccccccccCcCCEE
Confidence 8888888888776 232222110 1122222222 1 11 11236678899999987632 15789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
||+++..+|++||++++++|++++++
T Consensus 350 Ris~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 350 RLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp EEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred EEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 128
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.95 E-value=6.2e-27 Score=235.48 Aligned_cols=317 Identities=17% Similarity=0.146 Sum_probs=221.1
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~ 193 (480)
.+|+|.+|+.+++.. +. .....+...+++++++++++.+. ++++|++||++|++ +++.+ ..++++|++.+++
T Consensus 13 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~ 86 (384)
T 3zrp_A 13 IKEDVLVAGLENNVG--FT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG 86 (384)
T ss_dssp CCHHHHHHTTCCSCC--TT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred CCHHHHHHhhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence 478999988775532 11 11224567889999999988766 78999999999999 88754 3477899999999
Q ss_pred cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
||+.....+... .|...+.+|....+ ..| .+++++.++. .++++|+++++++++|.+.+
T Consensus 87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~~--~~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~- 145 (384)
T 3zrp_A 87 VFGDRWEQIFKR-----------YPVNVKVLRPSPGD--YVK----PGEVEEEVRK---SEYKLVALTHVETSTGVREP- 145 (384)
T ss_dssp HHHHHHHHHHTT-----------SSCEEEEECCSTTC--CCC----HHHHHHHHHH---SCEEEEEEESEETTTTEECC-
T ss_pred cchHHHHHHHHH-----------cCCcEEEecCCCCC--CCC----HHHHHHHHHh---CCCcEEEEeCCCCCCceECc-
Confidence 998533222111 13333333322211 123 6788888874 25889999999999998876
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhh-cCCC-
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVL-TRRN- 349 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l-~~~~- 349 (480)
+++|.++|++||+++|+||+|+ ++.. ...... ..+|+++ ++|+++++.++|++++++++++.+ ....
T Consensus 146 ---l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 216 (384)
T 3zrp_A 146 ---VKDVINKIRKYVELIVVDGVSS-VGAE---EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI 216 (384)
T ss_dssp ---HHHHHHHHGGGEEEEEEECTTT-TTTS---CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred ---HHHHHHHHHhcCCEEEEECccc-ccCc---cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence 9999999999999999999997 3221 112222 2356665 559998878899999999988776 1100
Q ss_pred --------------------ccccC-CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeE-
Q 011669 350 --------------------YFNTF-GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV- 404 (480)
Q Consensus 350 --------------------~~~t~-~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v- 404 (480)
....+ +.|...+++..++++.+.++ ++.++.+++.+++.+.|+++ .+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 294 (384)
T 3zrp_A 217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP 294 (384)
T ss_dssp CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence 11223 44666777777888876543 56777788888888888776 33222211
Q ss_pred -eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 405 -RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 -~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
...+.++++.+.. .....+.+.|.++||.+.++.. ..+++||+++..+|++++++++++|++++++
T Consensus 295 ~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 295 ESYSNTVTGVILKV---------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp GGBCSSEEEEECSS---------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCccEEEEECCC---------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 1235666776632 1246788899999999987642 1278999999889999999999999998864
No 129
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=9.9e-27 Score=236.46 Aligned_cols=320 Identities=13% Similarity=0.128 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCE-EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~-v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y 194 (480)
.+|+|.+|+.+++ ..|.... ..+...+++++++++++.+.+. +++++||++|++.+++.+. .++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~--~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQL--IGQYDPA-MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--RPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCC--CCTTCHH-HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSH
T ss_pred CCHHHHHHhhccc--cccccHH-HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 5789999887654 2222111 1355688999999998765554 8899999999999999873 4788999999999
Q ss_pred cccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 195 HGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 195 hG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
|+.... ..... |...+.+|.... +..| .++++++++.. ++++|+++++++++|.+.+
T Consensus 99 ~~~~~~~~~~~~------------g~~~~~v~~~~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~- 156 (411)
T 3nnk_A 99 FGHLLCEIARRC------------RAEVHTIEVPWG--EVFT----PDQVEDAVKRI---RPRLLLTVQGDTSTTMLQP- 156 (411)
T ss_dssp HHHHHHHHHHHT------------TCEEEEEECCTT--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred hHHHHHHHHHHc------------CCeEEEEecCCC--CCCC----HHHHHHHHhhC---CCeEEEEeCCCCCcceecc-
Confidence 984311 11111 222222221111 1123 67888888632 6789999999999998876
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC----
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---- 349 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~---- 349 (480)
+++|.++|++||+++|+||+|+ ++.. .+..+..++...+.+++|+++++.++|++++++++++.+....
T Consensus 157 ---l~~i~~l~~~~~~~li~Dea~~-~~~~---~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~ 229 (411)
T 3nnk_A 157 ---LAELGEICRRYDALFYTDATAS-LGGN---PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229 (411)
T ss_dssp ---CTTHHHHHHHHTCEEEEECTTT-BTTB---CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCG
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cCCc---ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccc
Confidence 8899999999999999999986 3321 2223333433334456699888788999999999988765432
Q ss_pred --------------------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHh
Q 011669 350 --------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTAL 394 (480)
Q Consensus 350 --------------------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l 394 (480)
....++.|..+++++.++++.+.++ +..++.+++.+++.+.|+++
T Consensus 230 ~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 309 (411)
T 3nnk_A 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM 309 (411)
T ss_dssp GGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0122345778888888888876554 56777788888888888775
Q ss_pred HHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeC-CCCCCHHHHHHH
Q 011669 395 KDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITP-PLCFTKEDADYL 469 (480)
Q Consensus 395 ~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~~~id~~ 469 (480)
.+..... ....+.++++.+... .....+.+.|+++ ||.+.++. ..++++||++ +..+|+++++++
T Consensus 310 --g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~ 379 (411)
T 3nnk_A 310 --GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTT 379 (411)
T ss_dssp --TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred --CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHH
Confidence 2222211 122356677766321 1145688888776 99998753 2357999998 778899999999
Q ss_pred HHHHHHHHhh
Q 011669 470 VDVMDYSLSK 479 (480)
Q Consensus 470 l~~l~~~l~~ 479 (480)
+++|++++++
T Consensus 380 ~~~l~~~l~~ 389 (411)
T 3nnk_A 380 LSALEAVLNY 389 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 130
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=1.2e-26 Score=233.22 Aligned_cols=320 Identities=15% Similarity=0.072 Sum_probs=207.9
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~ 193 (480)
.+|+|.+|+.+++.. |... ...+...++++++++.++.+. +.+++++||++|++.+++.+. .++++||+.+++
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~ 104 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG 104 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence 478899988775532 2211 123566788899999876543 455569999999999999775 367899999999
Q ss_pred cccccccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669 194 YHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272 (480)
Q Consensus 194 yhG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 272 (480)
||+....... ..+. .+..++.+. .+..| .++++++++ .++++|+++++++++|.+.+
T Consensus 105 ~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~~~----~~~~~v~~~~~~nptG~~~~ 162 (376)
T 3f0h_A 105 SFGHRFVQLCEIHEI----------PYVALKLEH----GKKLT----KEKLYEYDN----QNFTGLLVNVDETSTAVLYD 162 (376)
T ss_dssp HHHHHHHHHHHHTTC----------CEEEEECCT----TCCCC----HHHHHTTTT----SCCCEEEEESEETTTTEECC
T ss_pred hhhHHHHHHHHHcCC----------ceEEEeCCC----CCCCC----HHHHHHhhc----cCceEEEEecccCCcceecC
Confidence 9885432111 1111 122233221 12223 566766543 36888999999999999876
Q ss_pred CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCc--
Q 011669 273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY-- 350 (480)
Q Consensus 273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~-- 350 (480)
+++|+++|++||+++|+||+|+++++. +..+.+++...+.+++|+++++.++|++++++++++.+.....
T Consensus 163 ----l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3f0h_A 163 ----TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRT 234 (376)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCC
T ss_pred ----HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCc
Confidence 999999999999999999999865432 2334455555555777999977778999999999887764211
Q ss_pred ---------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEEEE
Q 011669 351 ---------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVE 414 (480)
Q Consensus 351 ---------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~ 414 (480)
...+..+..+++++.++++.+.+++..+++.+....+++.+.+..++++..... ...+.++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 314 (376)
T 3f0h_A 235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH 314 (376)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE
T ss_pred eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe
Confidence 113344555557777888876654223333333334444444333333321111 1122222222
Q ss_pred EecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 415 FVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
. +. .....+.+.|.++ ||++.++. ..++++||+++..+|++|+++++++|++++++
T Consensus 315 ~--~~-------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 315 P--TT-------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp E--SS-------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred C--CC-------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11 1146788888888 99998763 23578999999999999999999999998864
No 131
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=3.3e-27 Score=233.90 Aligned_cols=310 Identities=14% Similarity=0.107 Sum_probs=210.6
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI 175 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~Al 175 (480)
.+++||.++... ++ .+|+|.+|+.+++.+. ....|+.....+++++|+++++ .+.++|++++||++|++.++
T Consensus 19 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNENP--FP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCCS--SC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCCC--CC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 468898887753 44 6899999999887432 1123444447789999999887 56678999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+.+ ++.|++. ++||++....... |...+.+|.. ..|..| .+++ .++
T Consensus 94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l---------~~~ 139 (335)
T 1uu1_A 94 LMF-----DRSVFFP-PTYSCYRIFAKAV-------------GAKFLEVPLT--KDLRIP----EVNV---------GEG 139 (335)
T ss_dssp HHS-----SEEEECS-SSCHHHHHHHHHH-------------TCEEEECCCC--TTSCCC----CCCC---------CTT
T ss_pred HHh-----CCcEEEC-CCcHHHHHHHHHc-------------CCeEEEeccC--CCCCCC----HHHc---------CCC
Confidence 865 5789999 9999977544332 2222222211 112222 1122 145
Q ss_pred EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCcccc
Q 011669 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLG 333 (480)
Q Consensus 256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig 333 (480)
++|++...+|++|.+.+ .+++.++++.+| ++|+||+|++|+.. .... .+..+....+.++||.+| +|+|+|
T Consensus 140 ~~v~l~~p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 212 (335)
T 1uu1_A 140 DVVFIPNPNNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE--SYVDFLKKYENLAVIRTFSKAFSLAAQRVG 212 (335)
T ss_dssp EEEEEESSCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC--CCGGGGGTCSSEEEEEESTTTTTCGGGCCE
T ss_pred CEEEEeCCCCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch--hHHHHhhhCCCEEEEecchhhcCCcccCeE
Confidence 66664434778887764 455555555558 99999999987532 2222 233344455668999999 899999
Q ss_pred ccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669 334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412 (480)
Q Consensus 334 ~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~ 412 (480)
|+++++++++.+.... .+++.|+++++++.++|+..+ -++..++++++.+++.+.|+++ +. ...++.|.+++
T Consensus 213 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~ 285 (335)
T 1uu1_A 213 YVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFVF 285 (335)
T ss_dssp EEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEEE
T ss_pred EEEeCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEEE
Confidence 9999999988776532 457889999999999987521 1345556666666776666654 22 22345577888
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
+.+. . .....+.+.|.++||++.++ .+++||++. +++|+++++++|+++
T Consensus 286 ~~~~--------~-~~~~~~~~~l~~~gi~v~~~---~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 286 VFME--------K-EEKERLLEHLRTKNVAVRSF---REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp EECC--------T-HHHHHHHHHHHHHTEEEEEE---TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred EECC--------C-CCHHHHHHHHHHCCEEEEEC---CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 7762 1 23466888888999999883 578999953 578899999998764
No 132
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=1.9e-26 Score=233.00 Aligned_cols=331 Identities=12% Similarity=0.046 Sum_probs=226.8
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ 177 (480)
...|||..+. ++.+|+|.+|+.+++.. |. .....+...+++++++++++.+.+++++++||++|++.+++.
T Consensus 8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred CcceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence 3468886432 47889999998876643 21 111234578899999999987667899999999999999997
Q ss_pred HHhhcCCceEEEEcCCccccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 178 ARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 178 ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
+. .++++|++.+++||+.....+ ...+. .+..++.+. . +..| .+++++.++. .++++
T Consensus 79 ~~--~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~l~~--~~~~~ 136 (392)
T 2z9v_A 79 LI--SPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--N--EAID----PQAVADMLKA--HPEIT 136 (392)
T ss_dssp HC--CTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--T--SCCC----HHHHHHHHHH--CTTCC
T ss_pred hc--CCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--C--CCCC----HHHHHHHHhc--CCCCc
Confidence 73 367889999999998631111 11111 122233221 1 1123 6788888863 13578
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGA 334 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~ 334 (480)
+|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .+|+++ ++|+++++.++|+
T Consensus 137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~sK~~~~~~g~G~ 206 (392)
T 2z9v_A 137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK---THPEDC--KADIYVTGPNKCLGAPPGLTM 206 (392)
T ss_dssp EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc---cccccc--cceEEEecCcccccCCCceeE
Confidence 8999999999998876 9999999999999999999997 43221 122222 356664 5799887667799
Q ss_pred cccCHHHHHhhcCCC--------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669 335 VVTTPEIAEVLTRRN--------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL 391 (480)
Q Consensus 335 v~~~~~~~~~l~~~~--------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L 391 (480)
+++++++++.+.... .....+.|+.+++++.++|+.+.+. ++.++.+++.+++++.|
T Consensus 207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999887664210 1123345677777777888876543 46677788888888888
Q ss_pred HHhHHhcCcee-eE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHH
Q 011669 392 TALKDKYGIIG-DV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKED 465 (480)
Q Consensus 392 ~~l~~~~~~~~-~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~ 465 (480)
+++ .+.... .. ...+.++++.+... .....+.+.|.++ ||.+.++.. ..+++||++ +..+|+++
T Consensus 287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~ 356 (392)
T 2z9v_A 287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY 356 (392)
T ss_dssp HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence 775 333221 10 11466677766311 1145688888887 999988642 357899996 43789999
Q ss_pred HHHHHHHHHHHHhh
Q 011669 466 ADYLVDVMDYSLSK 479 (480)
Q Consensus 466 id~~l~~l~~~l~~ 479 (480)
+++++++|++++++
T Consensus 357 i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 357 AIAALTALGGAMNA 370 (392)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 133
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.95 E-value=8.3e-28 Score=245.04 Aligned_cols=343 Identities=11% Similarity=0.021 Sum_probs=218.2
Q ss_pred CCCEEEeccCCcccccCCC--CCHHHHHHHHH-HHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE--e
Q 011669 97 NGRRYLDAFGGIATVCCGH--CHPYVVDSIVN-QIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--T 164 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh--~~p~v~~A~~~-~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f--~ 164 (480)
+|+.++||..|.+...-|+ .+|.|.+++.+ ++... ....| ......++++.+++++.. +.++|++ |
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t 104 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS 104 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence 3566788888876433343 46899999988 77532 11123 234456677777776621 3568999 9
Q ss_pred CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244 (480)
Q Consensus 165 ~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le 244 (480)
+||++|++.++++++...+++.|++.+++|+++......... .+..++..+. ..++.| .++++
T Consensus 105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~ 167 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWAN--ETKSLD----LNGFL 167 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEET--TTTEEC----HHHHH
T ss_pred cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecC--CCCccC----HHHHH
Confidence 999999999987766556778999999999987655433211 1122221000 012223 67788
Q ss_pred HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC--CCcccc-cccCCCc----
Q 011669 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGF-EAHGVVP---- 317 (480)
Q Consensus 245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G--~~~~~~-~~~~~~p---- 317 (480)
+.++.. +...+++++...++++|.+ .+.+.+++|.++|++||+++|+||+|.+|++.+ .....+ ...+..+
T Consensus 168 ~~l~~~-~~~~~~~~~~~p~nPtG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 1yaa_A 168 NAIQKA-PEGSIFVLHSCAHNPTGLD-PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP 245 (412)
T ss_dssp HHHHHS-CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred HHHHhC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence 888642 1134555556677777865 477889999999999999999999999887653 011122 1111122
Q ss_pred --ceeeecccccc-Cccccccc--c-----CHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------hhH
Q 011669 318 --DIVTMAKGIGN-GIPLGAVV--T-----TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDK 375 (480)
Q Consensus 318 --Divt~sK~~g~-G~pig~v~--~-----~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~ 375 (480)
.+.++||.++. |+|+||++ + +++ +++.+.......+.+.|+++++++.++|+... -++
T Consensus 246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24478999996 99999998 7 566 66666542223344558899999988887542 123
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI 455 (480)
Q Consensus 376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 455 (480)
..++++++.+++.+.|+++....++.......|+++|+.+ + ...+.+.+.++||++.+ ++||
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gi~v~~------~~Ri 387 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------T----PQMVKRLEETHAVYLVA------SGRA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT------TSEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------C----HHHHHHHHHhCCEEecc------CcEE
Confidence 4455555566666666554100001111222345555432 1 23455555678999975 3799
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++. .+++++++++++|+++++.
T Consensus 388 s~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 388 SIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEcc-CCHhHHHHHHHHHHHHHHh
Confidence 9763 5999999999999998864
No 134
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.1e-25 Score=228.56 Aligned_cols=330 Identities=15% Similarity=0.080 Sum_probs=222.3
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~-----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA 170 (480)
++..|||+.++. +.+|+|.+++.+++..... ....| ..+...+++++++++++.+.++|+|++||+++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 357899986653 5789999999999876421 11122 24567899999999998766789999999999
Q ss_pred HHHHHHHHH-hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 171 NELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 171 ~~~Alk~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
++.+++... ...+++.|++..++|++.......+... .|...+.+|... ..+..| .++|++.++
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~---------~g~~v~~v~~~~-~~~~~d----~~~l~~~l~- 163 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHR---------YGAKVKWAEVDI-ETGELP----TWQWESLIS- 163 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHH---------HBCEEEEECCCT-TTCCCC----GGGHHHHCC-
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHh---------cCCeEEEEecCc-ccCCcC----HHHHHHHhC-
Confidence 999988542 2346788999999998765443322100 012222222110 011113 467777774
Q ss_pred cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccc
Q 011669 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG 327 (480)
Q Consensus 250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g 327 (480)
+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++ +|++ +++|.+|
T Consensus 164 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K~~g 230 (406)
T 3cai_A 164 ---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHAWGG 230 (406)
T ss_dssp ---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGGGTS
T ss_pred ---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhhhcC
Confidence 36899999999999998876 8999999999999999999997 3322 12223334 5665 5679776
Q ss_pred cCcccc-ccccCHHHHHhhcCCCc---------cccCCCcHHHHHHHHHHHHHhhh-----------------hHHHHHH
Q 011669 328 NGIPLG-AVVTTPEIAEVLTRRNY---------FNTFGGNPVCTAAGHAVLKVIQK-----------------DKLQNNA 380 (480)
Q Consensus 328 ~G~pig-~v~~~~~~~~~l~~~~~---------~~t~~~~~~~~aaa~a~L~~i~~-----------------~~~~~~~ 380 (480)
++ +| ++++++++++.+....+ ......|+.+++++.++++.+.+ +++.++.
T Consensus 231 ~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 308 (406)
T 3cai_A 231 PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYL 308 (406)
T ss_dssp CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHH
Confidence 43 89 99999999887765432 11334577777777788887654 2344555
Q ss_pred HHHHHHHHHHHHHhHHhcCceeeEe---ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------
Q 011669 381 HVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---------- 447 (480)
Q Consensus 381 ~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------- 447 (480)
+++.+++.+.|++ ++.+.... ..+.++++.+... ....+.+.|.++||.+.++.
T Consensus 309 ~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~ 375 (406)
T 3cai_A 309 NRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIANTGSRVLDVLGV 375 (406)
T ss_dssp HHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEECCSCHHHHHHTT
T ss_pred HHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEecCChHHHHHHcCC
Confidence 5566666665554 33222111 1344677766311 14568888889999998764
Q ss_pred -cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 448 -FYGNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 448 -~~~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
...+++||+++..+|++++++++++|++
T Consensus 376 ~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 376 NDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 1137899999988999999999999875
No 135
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=6.9e-27 Score=242.19 Aligned_cols=353 Identities=16% Similarity=0.125 Sum_probs=215.2
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
.|+.||||.+++++ +.|.+++.+++..... .....+...+|+++|+++++. ++|+||+||+||++.|++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP 109 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence 47889999887654 7888888877654321 222457788999999999954 789999999999999999
Q ss_pred HHHhh---cCCce---EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC--CCChHHHHHHHHHHHH
Q 011669 177 MARLY---TGCND---IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF--GADGEMYAKDVQDLID 248 (480)
Q Consensus 177 ~ar~~---~~~~~---ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~--~~d~~~~~~~le~~i~ 248 (480)
+++.+ +| +. ||+. ..+|+.....+...+......... ...+.....+| ..| .++|+++++
T Consensus 110 ~~~~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~d----~~~le~~i~ 177 (467)
T 1ax4_A 110 VLLKYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTE------KAFDSETYDDWKGDFD----IKKLKENIA 177 (467)
T ss_dssp HHHHHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCG------GGGCTTSCCTTTTCBC----HHHHHHHHH
T ss_pred HHHHhhccCC-CccceEEEe-ccccchhhHHHhccCCceeccccc------ccccccccCCcccccC----HHHHHHHHH
Confidence 98764 44 34 6665 333355444444433211100000 00000000111 123 678888887
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----c------cccCCCccccc-ccCCCc
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----F------ARTGSHFWGFE-AHGVVP 317 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----f------gr~G~~~~~~~-~~~~~p 317 (480)
....+++++|++++++|++|..+++.+++++|+++|++||++||+||+|.. | +..|.....+. .....+
T Consensus 178 ~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (467)
T 1ax4_A 178 QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA 257 (467)
T ss_dssp HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGC
T ss_pred hcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhcccc
Confidence 432236899999999998844556889999999999999999999999752 0 22221000000 000124
Q ss_pred cee--eeccccccCcccc-ccccC-H-HHHHhhcCC----CccccCCCcHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHH
Q 011669 318 DIV--TMAKGIGNGIPLG-AVVTT-P-EIAEVLTRR----NYFNTFGGNPVCTAAGH-AVLKVIQKDKLQNNAHVVGSYL 387 (480)
Q Consensus 318 Div--t~sK~~g~G~pig-~v~~~-~-~~~~~l~~~----~~~~t~~~~~~~~aaa~-a~L~~i~~~~~~~~~~~~~~~l 387 (480)
|++ +++|++ |.|+| +++++ + ++++.+... ....++++++..+.++. ++|+.+.+++..++..++++++
T Consensus 258 d~~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 335 (467)
T 1ax4_A 258 DALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYL 335 (467)
T ss_dssp SEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceEEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 665 456665 45665 45566 5 777655421 11235555554443333 3566544444555566777888
Q ss_pred HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC-CHHHHHHHHHHH-HHcCceeeccCc---------------CC
Q 011669 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKM-KEMGVLVGKGGF---------------YG 450 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~ 450 (480)
++.|++. .++.+. ...|.++|+.+..- ....+ .......+.+.| .++||.+.+++. ..
T Consensus 336 ~~~L~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 336 GDRLREA--GIPIQY--PTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp HHHHHHT--TCCBCS--SCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHHHhC--CCCccc--CCCceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 8888762 333332 23456666662100 00001 111346688888 889999987321 12
Q ss_pred CEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669 451 NVFRITPP-LCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 451 ~~iRi~p~-~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++||++| ..+|++++++++++|++++++
T Consensus 411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 411 EFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 78999999 558999999999999987653
No 136
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=2.2e-26 Score=232.61 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=222.3
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELA 174 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~A 174 (480)
.+|+.|+|..+.. ..+|+|.+|+.+++.. +. ..+..+...+++++++++++.+.+ ++++++||++|++.+
T Consensus 16 ~~~~~~~~~~g~~------~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGPS------NAPQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSCC------CCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCCC------CCCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 4567777754432 3679999998776543 11 112345678999999999976654 799999999999999
Q ss_pred HHHHHhhcCCceEEEEcCCccccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669 175 IMMARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253 (480)
Q Consensus 175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~ 253 (480)
++.+. .++++|++.+++||+.....+ ...+. .+..++.+. . +..| .+++++.++..
T Consensus 87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~i~~~--- 143 (393)
T 2huf_A 87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYGA----------DVRVVKSKV--G--QSLS----LDEIRDALLIH--- 143 (393)
T ss_dssp HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----HHHHHHHHHHH---
T ss_pred HHHHh--CCCCEEEEECCCcchHHHHHHHHHcCC----------eeEEEeCCC--C--CCCC----HHHHHHHHhcc---
Confidence 99773 367889999999998421111 10110 122222211 1 1123 67788888631
Q ss_pred ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCcc
Q 011669 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIP 331 (480)
Q Consensus 254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~p 331 (480)
++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +.... ..+|+++ ++|+++++.+
T Consensus 144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d~~~~s~sK~l~g~~G 213 (393)
T 2huf_A 144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR--WEIDAMYTGSQKVLGAPPG 213 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh--cCccEEEECCCcccccCCC
Confidence 4678888888999998876 8899999999999999999986 54322 22222 2367665 5699876555
Q ss_pred ccccccCHHHHHhhcCCC----c------------------cccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 011669 332 LGAVVTTPEIAEVLTRRN----Y------------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGS 385 (480)
Q Consensus 332 ig~v~~~~~~~~~l~~~~----~------------------~~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~ 385 (480)
+|++++++++++.+.... . ..++ +.+..+++++.++|+.+.+ ++..++.+++.+
T Consensus 214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 293 (393)
T 2huf_A 214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK 293 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 699999999988765431 0 1122 3456666667778887643 346677778888
Q ss_pred HHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCC
Q 011669 386 YLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLC 460 (480)
Q Consensus 386 ~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~ 460 (480)
++++.|+++ .+....... ..+.++++.+... .....+.+.|+++ ||.+.++.. ..+++||++ ++.
T Consensus 294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~ 363 (393)
T 2huf_A 294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQN 363 (393)
T ss_dssp HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGG
T ss_pred HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCc
Confidence 888888775 333222111 1244666765311 1145678888765 999987643 257899998 656
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 011669 461 FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l~~ 479 (480)
++++++++++++|++++++
T Consensus 364 ~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 364 ATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7899999999999998764
No 137
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-26 Score=231.06 Aligned_cols=329 Identities=11% Similarity=0.022 Sum_probs=214.7
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~ 180 (480)
+++|.++. .|+.+|+|.+++.+++... ....+..+...++++++++.++.+.++|+|++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56665532 3589999999999988642 33345678889999999999887778899999999999999998754
Q ss_pred hcCCceEEEEcCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCceE
Q 011669 181 YTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVA 256 (480)
Q Consensus 181 ~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~a 256 (480)
++++|++.+++||+.... ..... |...+.+|.. .+..| .+++++.++.. ...+++
T Consensus 89 --~gd~vl~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 89 --PWEAVIATQLGHISTHETGAIEAT------------GHKVVTAPCP---DGKLR----VADIESALHENRSEHMVIPK 147 (359)
T ss_dssp --TTEEEEEETTSHHHHSSTTHHHHT------------TCCEEEECCT---TSCCC----HHHHHHHHHHSCSTTSCEEE
T ss_pred --CCCEEEEcccchHHHHHHHHHhcC------------CCeeEEEeCC---CCeec----HHHHHHHHHHHHhccCCCce
Confidence 678999999999987653 11111 2222222221 22234 67888888642 112488
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc--cccCCCcccccccC--CCcceeee--ccccccCc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHG--VVPDIVTM--AKGIGNGI 330 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf--gr~G~~~~~~~~~~--~~pDivt~--sK~~g~G~ 330 (480)
+|+++++ +++|.+. +++++++|.++|++||+++|+||+|.+| |..+ . .....+ ..+|++++ +|. ++..
T Consensus 148 ~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~--~~~~~~~~~~~d~~~~s~~K~-g~~~ 221 (359)
T 1svv_A 148 LVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPV-N--DLTLADIARLTDMFYIGATKA-GGMF 221 (359)
T ss_dssp EEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-C--CCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred EEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC-c--chhhhhhhhcCCEEEEecccC-CCCC
Confidence 8888887 5678765 5789999999999999999999999765 4443 1 111111 24677655 564 3335
Q ss_pred cccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc
Q 011669 331 PLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG 408 (480)
Q Consensus 331 pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g 408 (480)
++|+++.++++++.+.... ...++..+....++..+.|+...-++..++.+++++++.+.| +. ..+..+. ...+
T Consensus 222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~~~~ 297 (359)
T 1svv_A 222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLAW--PSAS 297 (359)
T ss_dssp CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--CCSS
T ss_pred ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--CCcc
Confidence 6788888988876654321 223333232222222233321111345667777777777777 43 1222221 2334
Q ss_pred eeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.++++.+. ..+.+.|+++ ||++.+.. ...+++||++++.++++++++++++|++++++
T Consensus 298 ~~~~~~~~-------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 298 NQLFPILE-------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp SEECBEEE-------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ceEEEEcC-------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 55555541 3577888888 99984321 12468999999999999999999999998765
No 138
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.94 E-value=3.6e-26 Score=232.15 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=218.2
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHh-ccc--ccccc--CChH---HHH-HHHHHHHhCCCCCCEEEEeCCHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--STVLY--LNHA---IAD-FAEALASKMPGNLKVVFFTNSGTE 169 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-~~~--~~~~~--~~~~---~~~-l~e~L~~~~~~~~~~v~f~~sGse 169 (480)
++|||+.+|.... +|+|.+|+.+++.+ ..+ ....+ ..+. ..+ .+++++++++.+. ..+++++|++
T Consensus 23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence 4678998887543 79999999998864 221 11111 1222 222 2248888886543 3356778999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCccccc--ccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNA--AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~--~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
|++.+++.+. .++++|++.+++|++.. ...+...+.. +..++++.. ...+..| .+++++.+
T Consensus 97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~-~~~~~~d----~~~l~~~l 159 (407)
T 2dkj_A 97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVR-PDTELID----LEEVRRLA 159 (407)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCC-TTTSSCC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCC-cccCccC----HHHHHHHH
Confidence 9999999873 36789999999998763 2222222210 011221100 0112234 67788888
Q ss_pred HccCCCceEEEEE-cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCccee--eec
Q 011669 248 DFGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIV--TMA 323 (480)
Q Consensus 248 ~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDiv--t~s 323 (480)
+.. ++++|++ +|++| .+.+ +++|.++|++||+++|+||+|++ +...| .... ..+ .+|++ +++
T Consensus 160 ~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~s 225 (407)
T 2dkj_A 160 LEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPN--PLP-YAHVVTSTTH 225 (407)
T ss_dssp HHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCC--CTT-TCSEEEEESS
T ss_pred hhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCC--ccc-cccEEEEecc
Confidence 631 4567777 67764 3333 99999999999999999999986 54444 2211 111 26777 789
Q ss_pred cccccCccccccccC-HHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669 324 KGIGNGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY 398 (480)
Q Consensus 324 K~~g~G~pig~v~~~-~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 398 (480)
|+++ |+++||++++ +++++.+.... ++.+.+.++..++++.++|+.+.+ +++.++.+++.+++.+.|+++ .+
T Consensus 226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~ 302 (407)
T 2dkj_A 226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY 302 (407)
T ss_dssp GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence 9887 5678999999 89888775532 334445667777777888887543 456677777788888877765 22
Q ss_pred CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------CCCEEEEeCCC----CCCHHHH
Q 011669 399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------YGNVFRITPPL----CFTKEDA 466 (480)
Q Consensus 399 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~----~~t~~~i 466 (480)
..+.. ++.|.++++.+.... .....+.+.|.++||++.++.. ..+++||+++. .+|++++
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 22211 356888888874311 0145678888999999988632 24689999765 3799999
Q ss_pred HHHHHHHHHHHhh
Q 011669 467 DYLVDVMDYSLSK 479 (480)
Q Consensus 467 d~~l~~l~~~l~~ 479 (480)
++++++|++++++
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 139
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=1.1e-25 Score=229.01 Aligned_cols=324 Identities=12% Similarity=0.078 Sum_probs=215.4
Q ss_pred CCCCCHHHHHHHHHHHHhccc-cccccCChHHHHHHHHHHHhCCCCCCEEE-EeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669 113 CGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISL 190 (480)
Q Consensus 113 lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~l~e~L~~~~~~~~~~v~-f~~sGseA~~~Alk~ar~~~~~~~ii~~ 190 (480)
+|++++.+.+++.+++.+... .......+...+++++|+++++.+.+.++ +++||++|++.+++.+ ..++++|++.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~ 92 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP 92 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence 455544455555554444211 11111245578999999999987666555 8999999999999876 3478899999
Q ss_pred cCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669 191 RNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI 269 (480)
Q Consensus 191 ~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~ 269 (480)
+++||+.... ..... |+..+.+|....+. .| .+++++.++. +++++|+++++++++|.
T Consensus 93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~--~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 93 IYGRFGYLLTEIAERY------------GANVHMLECEWGTV--FD----PEDIIREIKK---VKPKIVAMVHGETSTGR 151 (416)
T ss_dssp ESSHHHHHHHHHHHHT------------TCEEEEEECCTTCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTE
T ss_pred cCCcccHHHHHHHHhc------------CCeeEEEecCCCCC--CC----HHHHHHHHhh---CCCcEEEEEccCCCCce
Confidence 9999983321 11111 22222222111111 13 6788888863 25689999999999998
Q ss_pred eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcC
Q 011669 270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTR 347 (480)
Q Consensus 270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~ 347 (480)
+.+ +++|.++|++||+++|+||+|+ +|.. .+..+.+ .+|++ +++|+++++.++|++++++++++.+..
T Consensus 152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 876 9999999999999999999997 3322 1122223 35666 456998888889999999998877653
Q ss_pred CC--------------------------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHH
Q 011669 348 RN--------------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSY 386 (480)
Q Consensus 348 ~~--------------------------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~ 386 (480)
.. .....+.|..++++..++++.+.+. ++.++.+++.++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1123345677788888888876553 667777888888
Q ss_pred HHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeCCCCCC
Q 011669 387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITPPLCFT 462 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t 462 (480)
+.+.|+++ .+...... ...+.++++.+... .....+.+.|.++ ||.+.++. ..++++||+++...+
T Consensus 302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~ 371 (416)
T 3isl_A 302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSC 371 (416)
T ss_dssp HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGC
T ss_pred HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCC
Confidence 88888774 33222111 11256677766321 1246788888877 99998763 235799999866556
Q ss_pred HHH-HHHHHHHHHHHHhh
Q 011669 463 KED-ADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~-id~~l~~l~~~l~~ 479 (480)
+++ +++++++|++++++
T Consensus 372 ~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 372 RKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 666 99999999998865
No 140
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=2.1e-26 Score=238.60 Aligned_cols=349 Identities=13% Similarity=0.089 Sum_probs=210.2
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
|+.||||.++.++ |+|.+++.+++.... ..| ..+...+|+++|+++++ .++++|++||+|||+.|++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHHH
Confidence 6689999887654 889999888775421 223 35778899999999995 4789999999999999999
Q ss_pred HHHhhc----C--C-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC--CCCCCChHHHHHHHHHHH
Q 011669 177 MARLYT----G--C-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--GVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 177 ~ar~~~----~--~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~d~~~~~~~le~~i 247 (480)
+++..+ | + +.|+.. .||+.+............. .++....++.... ..+..| +++|++++
T Consensus 108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d----~~~Le~~i 176 (467)
T 2oqx_A 108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVR-----NVYIKEAFDTGVRYDFKGNFD----LEGLERGI 176 (467)
T ss_dssp HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEE-----ECBCTTTTCTTSCCTTTTCBC----HHHHHHHH
T ss_pred HHhccccccCCCCccceEEec--ccccccchhhhhccCccee-----eccccccccCCCCCCccCCcC----HHHHHHHH
Confidence 988652 4 2 556654 5786543222211100000 0100001111000 011123 67888888
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----------ccccCCCccccc--ccCC
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGFE--AHGV 315 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----------fgr~G~~~~~~~--~~~~ 315 (480)
+....+++++|++++++|++|..+++.+++++|+++|++||++||+|++|.. .+..|.....+. .. .
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~ 255 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-K 255 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-G
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-c
Confidence 7422136899999999988644556889999999999999999999976642 133331111110 00 1
Q ss_pred Ccce--eeeccccccCccc-cccccCHH-HHH---hhcCC----CccccCCCcHHHHHHHH-HHHHHhhhhHHHHHHHHH
Q 011669 316 VPDI--VTMAKGIGNGIPL-GAVVTTPE-IAE---VLTRR----NYFNTFGGNPVCTAAGH-AVLKVIQKDKLQNNAHVV 383 (480)
Q Consensus 316 ~pDi--vt~sK~~g~G~pi-g~v~~~~~-~~~---~l~~~----~~~~t~~~~~~~~aaa~-a~L~~i~~~~~~~~~~~~ 383 (480)
.+|+ .+++|+++ .|+ |+++++++ +++ .+... ....++++......+++ ..++...+++..++..++
T Consensus 256 ~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~ 333 (467)
T 2oqx_A 256 YADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ 333 (467)
T ss_dssp GCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHH
Confidence 1343 56788885 344 45666755 333 33221 11123333333222222 222322223455666778
Q ss_pred HHHHHHHHHHhHHhcCceeeEeccceeEEEEEec--CCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC-----------
Q 011669 384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY----------- 449 (480)
Q Consensus 384 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----------- 449 (480)
++++++.|+++ .++.+ ...|.++++.+.. .... ........+.+.| .++||.+.+++.+
T Consensus 334 ~~~l~~~L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~ 406 (467)
T 2oqx_A 334 VQYLVDGLEEI--GVVCQ---QAGGHAAFVDAGKLLPHIP--ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQ 406 (467)
T ss_dssp HHHHHHHHHHT--TCCEE---EECSSCEEEEHHHHSTTSC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHC--CCeee---cCCceEEEEechhhcccCC--cccccHHHHHHHHHHhcCceeccccccccccccccccc
Confidence 88888888876 34433 3346677777632 1110 1110145567888 8899999875421
Q ss_pred ----CCEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669 450 ----GNVFRITPPLC-FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 ----~~~iRi~p~~~-~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||+++.. +|+++|++++++|++++++
T Consensus 407 ~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 407 LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 27899999988 9999999999999998864
No 141
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=2.7e-26 Score=227.91 Aligned_cols=317 Identities=15% Similarity=0.084 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~ 192 (480)
..+|+|.+|+.+++.. |.. ....+...+++++|+++++.+ .+++++++||++|++.+++.++ + ++|++.++
T Consensus 10 ~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~ 82 (353)
T 2yrr_A 10 PIPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVN 82 (353)
T ss_dssp CCCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEEC
T ss_pred CCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcC
Confidence 3579999998876643 211 011345789999999998764 5789999999999999998654 3 78999999
Q ss_pred Cccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669 193 AYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (480)
Q Consensus 193 ~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 271 (480)
+||+.... .....+. .+..++.+. .+..| .+++++.++.. ++++|+++++++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~ 141 (353)
T 2yrr_A 83 GAFSQRVAEMAALHGL----------DPEVLDFPP----GEPVD----PEAVARALKRR---RYRMVALVHGETSTGVLN 141 (353)
T ss_dssp SHHHHHHHHHHHHTTC----------CEEEEECCT----TSCCC----HHHHHHHHHHS---CCSEEEEESEETTTTEEC
T ss_pred CCchHHHHHHHHHcCC----------ceEEEeCCC----CCCCC----HHHHHHHHHhC---CCCEEEEEccCCCcceec
Confidence 99986111 1111111 122233221 11123 67888888642 567888999999999887
Q ss_pred CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcC--
Q 011669 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTR-- 347 (480)
Q Consensus 272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~-- 347 (480)
+ +++|.++|++||+++|+||+|. +|... .....++ +|+++ ++|.++++.++|++++++++++.+..
T Consensus 142 ~----~~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~ 211 (353)
T 2yrr_A 142 P----AEAIGALAKEAGALFFLDAVTT-LGMLP---FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKR 211 (353)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCS
T ss_pred C----HHHHHHHHHHcCCeEEEEcCcc-ccccc---ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCC
Confidence 6 9999999999999999999994 65432 2222233 56665 56988876668999999999887751
Q ss_pred C-------------CccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669 348 R-------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (480)
Q Consensus 348 ~-------------~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~ 411 (480)
. .....++.|+.+++++.++|+.+.++ +..++.+++.+++++.|+++ .+.........+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 289 (353)
T 2yrr_A 212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVL 289 (353)
T ss_dssp CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEE
T ss_pred CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEE
Confidence 0 11223455777888888888876543 45677777788888887764 222221111145566
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHH-HHHHHHHHHHhh
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDAD-YLVDVMDYSLSK 479 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id-~~l~~l~~~l~~ 479 (480)
++.+... .....+.+.|.++||.+.++.. ..+++||+++...++++++ +++++|+++++.
T Consensus 290 ~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 290 VVRPPEG--------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCC--------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 7766211 1145688899999999987642 2468999987778999999 999999998864
No 142
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.94 E-value=6.2e-26 Score=225.56 Aligned_cols=315 Identities=17% Similarity=0.108 Sum_probs=214.1
Q ss_pred CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y 194 (480)
..+|+|++|+.+++.. +. .....+...+++++|+++++.+.+++++++||++|++.+++.+. .++++|++.+++|
T Consensus 11 ~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~ 85 (352)
T 1iug_A 11 RLHPKALEALARPQLH--HR-TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGK 85 (352)
T ss_dssp CCCHHHHHHHHSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSH
T ss_pred CCCHHHHHHhccCCCC--cc-CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCc
Confidence 3679999999876642 11 11123456889999999997766789999999999999999774 3668999999999
Q ss_pred ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP 274 (480)
Q Consensus 195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~ 274 (480)
++.. ....... .|+..+.+|....+. .| .+++++ +++++|+++++++++|.+.+
T Consensus 86 ~~~~-~~~~~~~----------~g~~~~~v~~~~~~~--~d----~~~l~~-------~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 86 FSER-FYEIALE----------AGLVVERLDYPYGDT--PR----PEDVAK-------EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp HHHH-HHHHHHH----------TTCEEEEEECCTTCC--CC----TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred hhHH-HHHHHHH----------cCCceEEEeCCCCCC--CC----HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence 9865 1111100 022222221111111 12 223332 25678899999999998876
Q ss_pred ChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcC---
Q 011669 275 GYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTR--- 347 (480)
Q Consensus 275 ~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~--- 347 (480)
+++|.++|++| |+++|+||+|+ +|... +....+ .+|++ +++|+++++.++|++++++++++.+..
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~ 211 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY 211 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence 99999999999 99999999996 54321 222222 35666 456988876678999999987755211
Q ss_pred -----------CCccccCCCcHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669 348 -----------RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (480)
Q Consensus 348 -----------~~~~~t~~~~~~~~aaa~a~L~~i~~~--~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~ 414 (480)
......++.|+.+++++.++|+.+.++ +..++.+++.+++.+.|+++ .+...... ..+.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~ 288 (352)
T 1iug_A 212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY 288 (352)
T ss_dssp TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence 011234456788888888888876553 56667777777777777664 22211110 256778887
Q ss_pred EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+... .....+.+.|.++||.+.++.. ..+++||+++...|++++++++++|++++++
T Consensus 289 ~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 289 LPEG--------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp CCTT--------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCC--------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 6321 1145688889999999988642 2478999999888999999999999998765
No 143
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.94 E-value=3.4e-25 Score=222.73 Aligned_cols=327 Identities=14% Similarity=0.076 Sum_probs=217.8
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccC-----ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~-----~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~ 173 (480)
.|||+.++ |+.+|+|.+|+.+++.+.. +....|. .+...+++++++++++.+.+++++++||++|++.
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 75 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence 37887654 4789999999999987632 1111121 3467889999999997766789999999999999
Q ss_pred HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+++.+... .+++.|++.+++|++.......+.. .|...+.+|... .+..| .+++++.++
T Consensus 76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 136 (382)
T 4eb5_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCC--CCccC----HHHHHHHhc---
Confidence 99987621 3567899999999876554432211 122222222111 11123 577887774
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG 329 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G 329 (480)
+++++|+++++++++|.+.+ +++|.++|++||++ |+||+|+ +|... +..... .+|++ +++|.+|.
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~di~~~s~sK~~g~- 203 (382)
T 4eb5_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GADMLTISSNDIYGP- 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCSEEEEETGGGTCC-
T ss_pred -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCCEEEeehHHhcCC-
Confidence 26889999999999998876 89999999999999 9999997 54321 122222 35666 56797552
Q ss_pred ccccccccCHHHHHhhcCCC-------ccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 330 IPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 330 ~pig~v~~~~~~~~~l~~~~-------~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
.++|+++++++. .+.... .....+.++..++++.++++.+.+ +...++.+++.+++.+.|+++ +.
T Consensus 204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 277 (382)
T 4eb5_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE 277 (382)
T ss_dssp SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence 237899888763 122211 112334566777777788887654 244555556666666665543 32
Q ss_pred eeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEE
Q 011669 401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRI 455 (480)
Q Consensus 401 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi 455 (480)
+..... .+.++++.+... ....+.+.|.++||.+.++.. ..+++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (382)
T 4eb5_A 278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTS---------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred eEEeCCcccCCCCEEEEEeCCc---------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence 222222 255667766310 145688888899999987642 1468999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++..+|++++++++++|++++++
T Consensus 349 ~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 349 TLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 988888999999999999998764
No 144
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.94 E-value=4.1e-25 Score=221.72 Aligned_cols=327 Identities=14% Similarity=0.081 Sum_probs=216.1
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~ 173 (480)
.|||+.++ ++.+|.|.+++.+++.+... ... .+..+...+++++++++++.+.+++++++||++|++.
T Consensus 2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence 37787654 36789999999999876421 111 1224556789999999998777789999999999999
Q ss_pred HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
+++.+... .+++.|++.++.|++.......+.. .|+....+|... .+..| .+++++.++
T Consensus 76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 136 (382)
T 4hvk_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCC--CCCcC----HHHHHHHhc---
Confidence 99976521 3678899999999876654433211 122222222111 11123 677887774
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG 329 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G 329 (480)
+++++|+++++++++|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+..+ +|++ +++|.+| +
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~g-~ 203 (382)
T 4hvk_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKIG--ADMLTISSNDIYG-P 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHHT--CSEEEEESGGGTS-C
T ss_pred -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhcC--CCEEEEeHHHhcC-C
Confidence 36889999999999998876 9999999999999 99999986 3321 12222233 4555 5669654 3
Q ss_pred ccccccccCHHHHHhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 330 IPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 330 ~pig~v~~~~~~~~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
.++|+++++++. .+..... ......++.++++..++++.+.+ ++..++.+++.+++.+.|+++ +.
T Consensus 204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 277 (382)
T 4hvk_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE 277 (382)
T ss_dssp TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 357888877654 2322211 12334567888888888876543 345556666666666665543 32
Q ss_pred eeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------------------CCEEEE
Q 011669 401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------------GNVFRI 455 (480)
Q Consensus 401 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi 455 (480)
+..... .+.++.+.+... ....+.+.|.++||.+.++..+ .+++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl 348 (382)
T 4hvk_A 278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEE
T ss_pred eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEE
Confidence 222211 123555555211 1456788899999999876321 478999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 456 TPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 456 ~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+++..+|++|+++++++|++++++
T Consensus 349 ~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 349 TLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999889999999999999998764
No 145
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=2.1e-26 Score=242.42 Aligned_cols=343 Identities=13% Similarity=0.029 Sum_probs=209.2
Q ss_pred cccCCCCCHHHHHHHHHHHHhcccc-ccccCChHHHHHHHHHHHh----CCCC-CCEEEEeCCHHHHHHHHHHHHH---h
Q 011669 110 TVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASK----MPGN-LKVVFFTNSGTEANELAIMMAR---L 180 (480)
Q Consensus 110 ~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~l~e~L~~~----~~~~-~~~v~f~~sGseA~~~Alk~ar---~ 180 (480)
....++.+|++++++.+++....+. ...+.......+++.+.+. .+.. .++|++|+||++|+..+++... .
T Consensus 110 ~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l 189 (533)
T 3f6t_A 110 HTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL 189 (533)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 3344567899999998888764333 2223344555666666554 1221 3689999999999999998631 1
Q ss_pred hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (480)
Q Consensus 181 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ 260 (480)
..+++.|++.+++|++.......... .+..++++......|+.| .++|+++++ .++++|++
T Consensus 190 ~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~----~~~k~v~l 250 (533)
T 3f6t_A 190 LKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD----PSIKALIV 250 (533)
T ss_dssp SCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC----TTEEEEEE
T ss_pred cCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC----CCCeEEEE
Confidence 23568999999999987655443221 222232211001122223 567777764 36777777
Q ss_pred cccCCCCcceeCCCChHHHHHHHHH-HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCccccccccC
Q 011669 261 ESIQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTT 338 (480)
Q Consensus 261 epi~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~~ 338 (480)
+..+|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+..+.. ...+....+.||||.+| .|+|+||++++
T Consensus 251 ~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~ 328 (533)
T 3f6t_A 251 VNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGCTGWRLGVIALN 328 (533)
T ss_dssp ESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTCGGGCEEEEEEE
T ss_pred eCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCCcccceEEEEEC
Confidence 67678888765 7778899999999 689999999999988764422221 12234456779999999 79999999998
Q ss_pred HH-----HHHhh--------------------------------cCCCccccCCCcHHHHHH----HHHHHHH----hhh
Q 011669 339 PE-----IAEVL--------------------------------TRRNYFNTFGGNPVCTAA----GHAVLKV----IQK 373 (480)
Q Consensus 339 ~~-----~~~~l--------------------------------~~~~~~~t~~~~~~~~aa----a~a~L~~----i~~ 373 (480)
++ +++.+ .......+.+.+++++.+ ++++|.. -..
T Consensus 329 ~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~ 408 (533)
T 3f6t_A 329 EKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD 408 (533)
T ss_dssp SSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred cHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccch
Confidence 77 44333 333344566777777766 3344420 001
Q ss_pred hH----HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC--------HHHHHHH-HHHHHHcC
Q 011669 374 DK----LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--------KAETLYI-MDKMKEMG 440 (480)
Q Consensus 374 ~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--------~~~~~~~-~~~l~~~G 440 (480)
+. ..++++++.+++.+.|. .+........|+++|+++..-....... ......+ .+.+.++|
T Consensus 409 ~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~G 483 (533)
T 3f6t_A 409 DPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG 483 (533)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCC
Confidence 12 23333333334433332 3322223345667777763200000000 0012234 34455789
Q ss_pred ceeeccCcC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 441 VLVGKGGFY---GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 441 v~v~~~~~~---~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|++.++..+ .+++||+.. ..+++++++++++|.+++++
T Consensus 484 V~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 484 VVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp SSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence 999987433 468999963 36899999999999998764
No 146
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=1.2e-25 Score=223.78 Aligned_cols=328 Identities=15% Similarity=0.092 Sum_probs=208.4
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ 177 (480)
...+|||.++. .++.+|+|++|+.+++.. +.......+...+++++|+++++ ...+++|++||++|++.+++.
T Consensus 6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 6 RPPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHT
T ss_pred CCceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHH
Confidence 34689998753 368999999999987632 22222246778899999999987 334689999999999999997
Q ss_pred HHhhcCCceEEEEcCCcccccccc--cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH-HHHcc---C
Q 011669 178 ARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-LIDFG---T 251 (480)
Q Consensus 178 ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~---~ 251 (480)
++. +++.|++..++| +..... +..... |...+.+|.. .+..| .+++++ .++.. .
T Consensus 79 ~~~--~gd~vi~~~~~~-~~~~~~~~~~~~~~----------g~~~~~v~~~---~~~~d----~~~l~~~~i~~~~~~~ 138 (356)
T 1v72_A 79 MTP--PWGNIYCHPASH-INNDECGAPEFFSN----------GAKLMTVDGP---AAKLD----IVRLRERTREKVGDVH 138 (356)
T ss_dssp SCC--TTEEEEECTTSH-HHHSSTTHHHHHTT----------SCEEEECCCG---GGCCC----HHHHHHHTTSSTTCTT
T ss_pred hcC--CCCEEEEcCccc-hhhhhchHHHHHhC----------CcEEEEecCC---CCeEc----HHHHHHHhhhcchhhc
Confidence 653 556677766554 433322 222100 2222233321 12223 577887 77531 1
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccC--CCccee--eeccc
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHG--VVPDIV--TMAKG 325 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~--~~pDiv--t~sK~ 325 (480)
..++++|++++.++ +|.+ ++.+++++|.++|++||+++|+||+|..+. ..|... ...+ ...|++ +++|+
T Consensus 139 ~~~~~~v~~~~~~~-tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~~~d~~~~s~sK~ 213 (356)
T 1v72_A 139 TTQPACVSITQATE-VGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP---AEMTWKAGVDALSFGATKN 213 (356)
T ss_dssp SCEEEEEEEESSCT-TSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT---TTTTGGGTCCEEEECCGGG
T ss_pred cCCceEEEEEcCCC-CCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH---HHhhhhhcCCEEEEecccC
Confidence 12689999998764 7765 578899999999999999999999997542 112111 1111 134554 46787
Q ss_pred cccCcccc--ccccCHHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 326 IGNGIPLG--AVVTTPEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 326 ~g~G~pig--~v~~~~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
|.|+| ++++++++++.+.... +.++.... +..++.++++.++++ ++.++.+++.+++++.|+++ +
T Consensus 214 ---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 284 (356)
T 1v72_A 214 ---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G 284 (356)
T ss_dssp ---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T
T ss_pred ---CCcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C
Confidence 44777 7878888887654321 11222221 122333445555443 24455566666666666543 2
Q ss_pred ceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 400 IIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 400 ~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
.+.. ....+.++++.+. ..+.+.|.++||.+.++....+++||++++.+|++++++++++|+++++
T Consensus 285 g~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred CcEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 2222 2344666777661 2578888999999987642257999999999999999999999998765
Q ss_pred h
Q 011669 479 K 479 (480)
Q Consensus 479 ~ 479 (480)
+
T Consensus 352 ~ 352 (356)
T 1v72_A 352 R 352 (356)
T ss_dssp -
T ss_pred h
Confidence 3
No 147
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=6.4e-26 Score=229.75 Aligned_cols=334 Identities=15% Similarity=0.089 Sum_probs=198.8
Q ss_pred EEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCC
Q 011669 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS 166 (480)
Q Consensus 93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~s 166 (480)
.++.++..|||+.+.. ..+|+|.+++.+++.+.. +....+..+...+++++|+++++.+.++|++++|
T Consensus 15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 4567788899987543 568999999999987531 1111223455788999999999877778999999
Q ss_pred HHHHHHHHHHHHHhh--cCCc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669 167 GTEANELAIMMARLY--TGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243 (480)
Q Consensus 167 GseA~~~Alk~ar~~--~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l 243 (480)
|++|++.+++.+..+ .+++ .|++.++.|++.......+.. .|...+.+|... .+..| .+++
T Consensus 89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l 152 (400)
T 3vax_A 89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGP--SGRIS----VEGV 152 (400)
T ss_dssp HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCT--TCCCC----HHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCC--CCCcC----HHHH
Confidence 999999999976521 2567 899988888765544333211 122222222211 12123 5677
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee-
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM- 322 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~- 322 (480)
++.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++... .+..+. +|++++
T Consensus 153 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~-~d~~~~s 217 (400)
T 3vax_A 153 MERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP-----GDLTTP-IDMISIS 217 (400)
T ss_dssp HTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG-----GGGGSC-CSEEEEE
T ss_pred HHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC-----cChhhc-CcEEEEe
Confidence 77664 37899999999999998876 8999999999999999999997 33221 222234 787755
Q ss_pred -ccccccCccccccc-cCHH-HH---HhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Q 011669 323 -AKGIGNGIPLGAVV-TTPE-IA---EVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYL 387 (480)
Q Consensus 323 -sK~~g~G~pig~v~-~~~~-~~---~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l 387 (480)
+|.+ ++.++|+++ ++++ +. ..+..... ......++.++++..++++.+.+ +++.++.+++.+++
T Consensus 218 ~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 296 (400)
T 3vax_A 218 GHKIG-APKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL 296 (400)
T ss_dssp TGGGT-SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5944 444578877 7651 11 12222111 12344567777777788887654 45666677777777
Q ss_pred HHHHHHhHHhcCceeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--------------
Q 011669 388 KERLTALKDKYGIIGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-------------- 449 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------- 449 (480)
.+.|+ + +.+..... .+.++++.+... ....+.+.|. +||.+.++..+
T Consensus 297 ~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 297 LAGLA-S----TSFQVNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp HHHHT-T----TTCEECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred HHhhC-C----CCEEEeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHc
Confidence 77665 2 22221111 234555554211 1456788888 99988775211
Q ss_pred -------CCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 -------GNVFRITP-PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 -------~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||++ +...|++++++++++|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 37899999 8889999999999999998764
No 148
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=2.3e-25 Score=225.31 Aligned_cols=318 Identities=13% Similarity=0.108 Sum_probs=215.9
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y 194 (480)
.+|+|.+|+.+++.. +. ..+......+++++|+++++.+.+ +|++++||++|++.+++.+. .++++|++.+++|
T Consensus 29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~ 103 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI 103 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence 568898888765422 11 112234578999999999987666 89999999999999999774 3678999999999
Q ss_pred ccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 195 HGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 195 hG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
++... ......+. .+..++.+. .+..| .+++++.++.. ++++|+++++++++|.+.+
T Consensus 104 ~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~- 161 (396)
T 2ch1_A 104 WAERAVEMSERYGA----------DVRTIEGPP----DRPFS----LETLARAIELH---QPKCLFLTHGDSSSGLLQP- 161 (396)
T ss_dssp HHHHHHHHHHHTTC----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred ccHHHHHHHHHcCC----------ceEEecCCC----CCCCC----HHHHHHHHHhC---CCCEEEEECCCCCCceecC-
Confidence 98631 11111111 122222211 12234 67788888631 4678888888889998876
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCccccccccCHHHHHhhcCCC--
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTRRN-- 349 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig~v~~~~~~~~~l~~~~-- 349 (480)
+++|.++|++||+++|+||+|. +|... ...+ ...+|++++ +|.++++.++|++++++++++.+....
T Consensus 162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 232 (396)
T 2ch1_A 162 ---LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK 232 (396)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence 8899999999999999999997 65322 1222 234677765 499988778899999999887764210
Q ss_pred ---------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669 350 ---------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405 (480)
Q Consensus 350 ---------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~ 405 (480)
....++.+..+++++.++|+.+.++ +..++.+++.+++.+.|+++ .+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 310 (396)
T 2ch1_A 233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP 310 (396)
T ss_dssp CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence 1122345677888888888876433 46677777788888888775 333221111
Q ss_pred --ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669 406 --GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 406 --g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~ 479 (480)
..+.++++.+... .....+.+.|+++ ||.+.++.. ..+++||++ ++.++++++++++++|++++++
T Consensus 311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1234667765211 1145688888775 999987632 357899998 5678999999999999998864
No 149
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=4.7e-26 Score=234.93 Aligned_cols=338 Identities=12% Similarity=0.083 Sum_probs=207.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhcc----ccccccC-ChHHHHHHHHHHHhC-CCC-----CCEEEE--eCCH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----HSTVLYL-NHAIADFAEALASKM-PGN-----LKVVFF--TNSG 167 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~----~~~~~~~-~~~~~~l~e~L~~~~-~~~-----~~~v~f--~~sG 167 (480)
.|||..|.+.- .+++|.+.+++.+++.++. +....|. .....++++.+++++ +.+ .++|++ |+||
T Consensus 51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 46666665421 1344444555544422221 2222333 345677888888876 433 468999 9999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCccccccccc----ccccCCCccccccCCCeeEecCCCCcCC-CCCCChHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM----GATAQSNWKFNVVQTGVHHALNPDPYRG-VFGADGEMYAKD 242 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~p~~~~~-~~~~d~~~~~~~ 242 (480)
++|++.++.+.....+++.|++.+++|+++..... .. |...+.+|..... .|.-| +++
T Consensus 129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-------------G~~v~~~~~~~~~~~~~~d----~e~ 191 (448)
T 3meb_A 129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-------------KVPYKEYTYLRKDGELEID----FSN 191 (448)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-------------TSCCEEECCBCTTSCSSBC----HHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-------------CCeEEEEeccccccCCCcC----HHH
Confidence 99999977665555577899999999987655443 22 2222222211011 12234 677
Q ss_pred HHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccccccc-CCCcc-
Q 011669 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPD- 318 (480)
Q Consensus 243 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~~~-~~~pD- 318 (480)
+++.++.. +++++++++...+|++|.+ ++.+.+++|.++|++||+++|+||+|.+|++.+. ..++.... +..++
T Consensus 192 l~~~l~~~-~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (448)
T 3meb_A 192 TKKDIQSA-PEKSIFLFHACAHNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEV 269 (448)
T ss_dssp HHHHHHHS-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCE
T ss_pred HHHHHHhC-CCCcEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcE
Confidence 88888643 2346677777778888876 4778899999999999999999999999976541 11222211 22334
Q ss_pred --eeeeccccc-cCcccccc--cc--------C-H----HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------
Q 011669 319 --IVTMAKGIG-NGIPLGAV--VT--------T-P----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-------- 372 (480)
Q Consensus 319 --ivt~sK~~g-~G~pig~v--~~--------~-~----~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-------- 372 (480)
+.+|||.+| .|+|+||+ ++ + + ++++.+.......+.+.+.+++.++.++|+...
T Consensus 270 i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 349 (448)
T 3meb_A 270 LVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDN 349 (448)
T ss_dssp EEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred EEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHH
Confidence 457999999 79999997 55 3 4 555555433334555677888888887765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhcCc------eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669 373 KDKLQNNAHVVGSYLKERLTALKDKYGI------IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK 445 (480)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~------~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 445 (480)
-+...++++++++++.+.|+++ ..+. +... ...|++.++.+. ...+...+.++||++.+
T Consensus 350 ~~~~~~~~~~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~ll~~~gV~v~~ 415 (448)
T 3meb_A 350 VKEMSARIHRMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTFTGLT------------PEHVDYLKEKWSIYLVK 415 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEecCCC------------HHHHHHHHHhCCEEEeC
Confidence 1233444555555555555543 1122 2222 234555554431 12333344678999988
Q ss_pred cCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 446 GGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 446 ~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|. .||+.. ..++++|++++++|++++++
T Consensus 416 G~-----gRis~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 416 AG-----GRMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp GG-----GEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred CC-----cEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 64 288864 34778899999999999875
No 150
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=1e-24 Score=228.78 Aligned_cols=324 Identities=14% Similarity=0.074 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHHHHhcccccc--ccCC----hHHHHHHHHHHHhCCCCC--CEE--EEeCCHHHHHHHHHHHHHhhcC-
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTV--LYLN----HAIADFAEALASKMPGNL--KVV--FFTNSGTEANELAIMMARLYTG- 183 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~--~~~~----~~~~~l~e~L~~~~~~~~--~~v--~f~~sGseA~~~Alk~ar~~~~- 183 (480)
|+++.+.+++.+++........ .... ....+++++++++++.+. +++ +|++||++|++.+++.++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 5678888888877765422111 1112 234567778888886543 466 9999999999999999887541
Q ss_pred -----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669 184 -----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258 (480)
Q Consensus 184 -----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v 258 (480)
++.|++..++|++....+..... .+..++... .+..| .++|+++++ +++++|
T Consensus 187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~G~-----------~v~~v~~~~----~~~~d----~~~Le~~i~----~~~~~v 243 (514)
T 3mad_A 187 TKGITAPEAVVPVSAHAAFDKAAQYFGI-----------KLVRTPLDA----DYRAD----VAAMREAIT----PNTVVV 243 (514)
T ss_dssp HHCCSSCEEEEETTSCTHHHHHHHHHTC-----------EEEEECBCT----TSCBC----HHHHHHHCC----TTEEEE
T ss_pred hcCCCCCeEEEeCccchHHHHHHHHcCC-----------eeEEeeeCC----CCCCC----HHHHHHHhc----cCCEEE
Confidence 27899999999875544332211 223333221 12123 678888875 378899
Q ss_pred EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc-----cccCC--CcccccccCCCcceeeeccccccCcc
Q 011669 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF-----ARTGS--HFWGFEAHGVVPDIVTMAKGIGNGIP 331 (480)
Q Consensus 259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf-----gr~G~--~~~~~~~~~~~pDivt~sK~~g~G~p 331 (480)
+++++++++|.+.+ +++|.++|++||+++|+||+|++| ++.|. ..+.+...++...+.+++|.+++|.+
T Consensus 244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~ 319 (514)
T 3mad_A 244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG 319 (514)
T ss_dssp EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSS
T ss_pred EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCC
Confidence 99999999998876 999999999999999999999986 33441 12333444553334456699888899
Q ss_pred ccccccCHHHHHhhcCCC----c-----cccC--CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669 332 LGAVVTTPEIAEVLTRRN----Y-----FNTF--GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDK 397 (480)
Q Consensus 332 ig~v~~~~~~~~~l~~~~----~-----~~t~--~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~ 397 (480)
+|+++++++......... . ..++ +.+....++..++++.+.. +++.++..++.+++++.|+++
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--- 396 (514)
T 3mad_A 320 TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI--- 396 (514)
T ss_dssp CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 999998877654322100 0 0111 1122223334444444433 456677777777777777664
Q ss_pred cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Q 011669 398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP-LCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~-~~~t~~~id~~l~~l~~~ 476 (480)
+.+..+.....++++.... .....+.+.|.++||++ ++..+.+.+|++++ ..++++++++++++|+++
T Consensus 397 -~g~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~Gi~v-~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 397 -PSLKILGDPLWVIAVASDE---------LNIYQVMEEMAGRGWRL-NGLHRPPAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp -TTCEESSCCSSEEEEECSS---------SCHHHHHHHHHTTTCBC-EEETTTTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred -CCeEEeCCCeEEEEEeCCC---------CCHHHHHHHHHhcCCEe-ccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 2222222223355554311 11456888999999998 44334678999987 455679999999999998
Q ss_pred Hhh
Q 011669 477 LSK 479 (480)
Q Consensus 477 l~~ 479 (480)
+++
T Consensus 466 l~~ 468 (514)
T 3mad_A 466 VAQ 468 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 151
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.93 E-value=5.2e-25 Score=227.42 Aligned_cols=343 Identities=14% Similarity=0.041 Sum_probs=216.4
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
.|+.||||.++.++.. -.+++.+++. .. . ......+...+|+++|+++++. +++++++||++|++.+++
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~-~-~~y~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MG-D-EAYAGSENFYHLERTVQELFGF--KHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TC-C-CCSSSCHHHHHHHHHHHHHHCC--SEEEEESSHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cc-h-hhcccChhHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHH
Confidence 4678999988876552 3577777764 11 1 1122467788999999999853 589999999999999998
Q ss_pred HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc------CCC--CCCChHHHHHHHHHHHH
Q 011669 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY------RGV--FGADGEMYAKDVQDLID 248 (480)
Q Consensus 177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~------~~~--~~~d~~~~~~~le~~i~ 248 (480)
.+.. +++ |+..++||+.....+...+.. .+.++... ..+ |+.| .++|+++++
T Consensus 109 ~l~~--~gd--i~~~~~~~~~~~~~~~~~G~~------------~~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~ 168 (456)
T 2ez2_A 109 LAIK--PGQ--YVAGNMYFTTTRYHQEKNGAV------------FVDIVRDEAHDAGLNIAFKGDID----LKKLQKLID 168 (456)
T ss_dssp HHCC--TTC--EEEESSCCHHHHHHHHHTTCE------------EEECBCGGGGCTTCCCSCTTCBC----HHHHHHHHH
T ss_pred HhCC--CCC--EeccccccchhHHHHHHcCCE------------EEEecccccccccccccccCCCC----HHHHHHHHH
Confidence 7732 344 788999988765555444321 11111100 001 2224 678888886
Q ss_pred ccCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----------ccccCCCcccc-cccCCC
Q 011669 249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGF-EAHGVV 316 (480)
Q Consensus 249 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----------fgr~G~~~~~~-~~~~~~ 316 (480)
......+++|+++ |+|+++|.+ .+.+++++|.++|++||+++|+||+|+. +.+.|..+..+ +..+..
T Consensus 169 ~~t~~~~~~v~l~~p~n~ptG~~-~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 247 (456)
T 2ez2_A 169 EKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY 247 (456)
T ss_dssp HHCGGGEEEEEEESSBTTTTSBC-CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTT
T ss_pred hccccceeEEEEeccCCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhccc
Confidence 4322346888888 455588864 5888999999999999999999999984 34555211000 012334
Q ss_pred cceeeec-ccccc-Ccccccccc-CHHHHHhhcCCC----ccccCC-CcHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 011669 317 PDIVTMA-KGIGN-GIPLGAVVT-TPEIAEVLTRRN----YFNTFG-GNPVCTAA-GHAVLKVIQKDKLQNNAHVVGSYL 387 (480)
Q Consensus 317 pDivt~s-K~~g~-G~pig~v~~-~~~~~~~l~~~~----~~~t~~-~~~~~~aa-a~a~L~~i~~~~~~~~~~~~~~~l 387 (480)
+|++++| |.+++ | +.|++++ ++++++.+.... ...++. .++..+++ +.+.++.++ +++.++..++.+++
T Consensus 248 ~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l 325 (456)
T 2ez2_A 248 ADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYL 325 (456)
T ss_dssp CSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 7888764 55543 5 5789988 688877654321 111222 24334344 555555443 45667777778888
Q ss_pred HHHHHHhHHhcCceeeEeccceeEEEEEec--CCCcCCCCHHHHHHHHHHH-HHcCceeeccCc---------------C
Q 011669 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAETLYIMDKM-KEMGVLVGKGGF---------------Y 449 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~ 449 (480)
++.|+++ .++.+. ...|.++++.+.. .... ........+.+.| .++||.+.+.+. .
T Consensus 326 ~~~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~ 399 (456)
T 2ez2_A 326 GDKLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPK 399 (456)
T ss_dssp HHHHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCS
T ss_pred HHHHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCC
Confidence 8887764 333222 2346777777632 1111 1100134456666 688998755321 1
Q ss_pred CCEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669 450 GNVFRITPPLC-FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 ~~~iRi~p~~~-~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||+++.. ++++++++++++|++++++
T Consensus 400 ~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 36899999987 8999999999999998764
No 152
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=9.1e-25 Score=223.85 Aligned_cols=347 Identities=16% Similarity=0.158 Sum_probs=210.8
Q ss_pred CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccC-----ChHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Q 011669 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTE 169 (480)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~-----~~~~~~l~e~L~~~~~~~~~~v~f~~sGse 169 (480)
.+|..|||+.++. +.+|+|++|+.+++.... +....|. .+...+++++|+++++.+.++|+|++||+|
T Consensus 16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~ 89 (432)
T 3a9z_A 16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTE 89 (432)
T ss_dssp --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHH
T ss_pred CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHH
Confidence 3578899976542 678999999999987632 1111221 234578999999999876678999999999
Q ss_pred HHHHHHHHHHh-h-----cCCceEEEEcCCcccccccccccccCCCc----cccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669 170 ANELAIMMARL-Y-----TGCNDIISLRNAYHGNAAGTMGATAQSNW----KFNVVQTGVHHALNPDPYRGVFGADGEMY 239 (480)
Q Consensus 170 A~~~Alk~ar~-~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~----~~~~~~~g~~~~~~p~~~~~~~~~d~~~~ 239 (480)
|++.+++.+.. + .++++|++++++||++.....+....... ..-....|...+.+|.... .+..|
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d---- 164 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVE---- 164 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCC----
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcC----
Confidence 99999998741 1 25688999999999863222211110000 0000012443333332210 11123
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC----------CEEEEcccccCccccCCCccc
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG----------GLCIADEVQAGFARTGSHFWG 309 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g----------illI~DEv~tgfgr~G~~~~~ 309 (480)
.++|++.++ +++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|. +|... ..
T Consensus 165 ~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~---~~ 232 (432)
T 3a9z_A 165 VEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR---VD 232 (432)
T ss_dssp HHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC---CC
T ss_pred HHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc---cC
Confidence 567777664 36889999999999999887 899999999999 9999999995 54432 11
Q ss_pred ccccCCCccee--eeccccccCccccccccCHHH-HHhhcCCC-------ccccCCCcHHHHHHHHHHHHHhhh--hHHH
Q 011669 310 FEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEI-AEVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQ 377 (480)
Q Consensus 310 ~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~-~~~l~~~~-------~~~t~~~~~~~~aaa~a~L~~i~~--~~~~ 377 (480)
.. ...+|++ +++|.+ |.++||+++++++ ...+.... ...+++.|+.+++++.++|+.+.+ +++.
T Consensus 233 ~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~ 308 (432)
T 3a9z_A 233 VE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYE 308 (432)
T ss_dssp HH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHH
Confidence 21 2246766 458976 4679999999875 33333221 123456788888888888887655 4567
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCce--e---eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc------
Q 011669 378 NNAHVVGSYLKERLTALKDKYGII--G---DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG------ 446 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~~~~~~--~---~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------ 446 (480)
++.+++.+++.+.|+++.. .... . ..+..+.+.++.+.... .. ...+.+.+ .|+++..|
T Consensus 309 ~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l--~~i~~~~G~~~~~~ 378 (432)
T 3a9z_A 309 AHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQC--QTLLASVGASCHSD 378 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTT----CC---HHHHHHHC--SSEECBSSCGGGGG
T ss_pred HHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHh--cCeEEeccccccCC
Confidence 7778888888888877521 1111 1 01234556677774311 01 22333333 24444322
Q ss_pred ------------Cc----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 447 ------------GF----YGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 447 ------------~~----~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+. ..+++||+++..+|++|+++++++|++++++
T Consensus 379 ~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 379 HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 10 1378999999888999999999999998764
No 153
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.93 E-value=2.6e-25 Score=230.40 Aligned_cols=344 Identities=14% Similarity=0.106 Sum_probs=231.7
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc------ccc-ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH------STV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTE 169 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~------~~~-~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGse 169 (480)
++..|+|.. ++|+.++.+.+++.+++..... ... ....+...+++++++++++.+.++|+|++|+++
T Consensus 66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence 456788743 4577888898888887765321 110 011244467899999998877788999999999
Q ss_pred HHHHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 170 A~~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
+++.+++.+... ..+++||+.+++||+.................. ..+...+.+. .+..| .++++++++
T Consensus 140 al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~--~~v~~~~~~~----~~~~d----~~~l~~~i~ 209 (465)
T 3e9k_A 140 NLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE--SMRMIKPREG----EETLR----IEDILEVIE 209 (465)
T ss_dssp HHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH--HEEEECCCTT----CSSCC----HHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee--eeEEEecCCC----CCccC----HHHHHHHHH
Confidence 999999876432 235679999999998655433221100000000 0011112111 11123 678888886
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI 326 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~ 326 (480)
++ .+++++|+++++++++|.+.+ +++|.++|++||+++|+|++|+ +|.. ......++ .|++ +++|.+
T Consensus 210 ~~-~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~---~~~~~~~~--~D~~~~s~~K~l 278 (465)
T 3e9k_A 210 KE-GDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV---ELYLHDWG--VDFACWCSYKYL 278 (465)
T ss_dssp HH-GGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHHT--CCEEEECSSSTT
T ss_pred hc-CCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc---CCchhhcC--CCEEEECccccc
Confidence 42 137899999999999999976 9999999999999999999997 3322 11222233 5665 566999
Q ss_pred ccC-ccccccccCHHHHHhhcCCCcc---c----------------------cCCCcHHHHHHHHHHHHHhhh---hHHH
Q 011669 327 GNG-IPLGAVVTTPEIAEVLTRRNYF---N----------------------TFGGNPVCTAAGHAVLKVIQK---DKLQ 377 (480)
Q Consensus 327 g~G-~pig~v~~~~~~~~~l~~~~~~---~----------------------t~~~~~~~~aaa~a~L~~i~~---~~~~ 377 (480)
++| .++|++++++++.+.+.....+ + ..+.|++++++..++++.+.+ +++.
T Consensus 279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~ 358 (465)
T 3e9k_A 279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358 (465)
T ss_dssp CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence 644 5789999999987766543211 1 014567888888888888765 4567
Q ss_pred HHHHHHHHHHHHHHHHhHH---------hcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669 378 NNAHVVGSYLKERLTALKD---------KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG 446 (480)
Q Consensus 378 ~~~~~~~~~l~~~L~~l~~---------~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 446 (480)
++..++.+++.+.|+++.. .+..+. +.+..|.++++.+..+ ...+.+.|.++||++...
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~ 428 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKR 428 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecC
Confidence 7788888888888877521 111111 2233588888877411 235788899999998754
Q ss_pred CcCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669 447 GFYGNVFRITP-PLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 447 ~~~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+ .+++||+| ++.+|++||++++++|++++++
T Consensus 429 ~--~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 429 N--PNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp T--TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred C--CCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 3 57999999 8999999999999999998864
No 154
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.93 E-value=1.9e-24 Score=219.38 Aligned_cols=316 Identities=11% Similarity=0.002 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHHHHHh-ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669 115 HCHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~-~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~ 193 (480)
+..+++.+++..+... ..+....+.++...+++++|+++++.+ .+++++||++|++.+++.+.. +++.|++.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--~gd~vi~~~~~ 112 (398)
T 2rfv_A 37 FVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLCQ--QGDHIVSASAI 112 (398)
T ss_dssp CCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--TTCEEEEESSS
T ss_pred cccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCC
Confidence 3446666665522221 223344567889999999999998653 678889999999999997643 67899999999
Q ss_pred cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
||+.......... ..|+....+|. .| .+++++.++ +++++|++++++|++|.+.+
T Consensus 113 ~~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~- 167 (398)
T 2rfv_A 113 YGCTHAFLSHSMP---------KFGINVRFVDA-------AK----PEEIRAAMR----PETKVVYIETPANPTLSLVD- 167 (398)
T ss_dssp CHHHHHHHHTHHH---------HTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC-
T ss_pred cccHHHHHHHHHH---------HcCCEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC-
Confidence 9886554321100 01333332221 12 577777774 37899999999999998875
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCc
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNY 350 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~ 350 (480)
+++|.++|++||+++|+||+|..+ ..+ ... .++....+.+++|.+++ |+|+ |++++++++++ .+.....
T Consensus 168 ---l~~i~~l~~~~~~~li~De~~~~~-~~~-~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~ 239 (398)
T 2rfv_A 168 ---IETVAGIAHQQGALLVVDNTFMSP-YCQ-QPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK 239 (398)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTCT-TTC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECCCccc-ccC-Cch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence 999999999999999999999743 222 221 23433444688999985 8998 99999998876 5554333
Q ss_pred cc-cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH----------HhcCceee----EeccceeEEEEE
Q 011669 351 FN-TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIGD----VRGRGFLLGVEF 415 (480)
Q Consensus 351 ~~-t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~~----v~g~g~~~~i~~ 415 (480)
.. +.+.+++.++++.++|+.+ +...++..+..+.+.+.|++.. ..++.+.. .++.|.++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~ 317 (398)
T 2rfv_A 240 DITGGCMSPFNAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEI 317 (398)
T ss_dssp HTTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred hCCCCCCCHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 33 5678899999999888643 2233444455555555555421 01111111 135688888887
Q ss_pred ecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHHHHHH
Q 011669 416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~id~~l 470 (480)
... ......+.+.+...|+.+.+|+. ..+.+||+++...++++|+.++
T Consensus 318 ~~~-------~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 390 (398)
T 2rfv_A 318 AGG-------LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLE 390 (398)
T ss_dssp TTH-------HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred cCC-------HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Confidence 321 12234455555555777665522 1479999999999999999999
Q ss_pred HHHHHH
Q 011669 471 DVMDYS 476 (480)
Q Consensus 471 ~~l~~~ 476 (480)
++|+++
T Consensus 391 ~al~~~ 396 (398)
T 2rfv_A 391 HAIRKA 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988764
No 155
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=1e-25 Score=229.39 Aligned_cols=333 Identities=15% Similarity=0.130 Sum_probs=209.4
Q ss_pred EEEeccCCcc-cccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC-CCC-----CCEEE--EeCCHHH
Q 011669 100 RYLDAFGGIA-TVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM-PGN-----LKVVF--FTNSGTE 169 (480)
Q Consensus 100 ~ylD~~~g~~-~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~-~~~-----~~~v~--f~~sGse 169 (480)
.+|||..|.+ .. .++|.+.+++.++... ....| ......+|++.+++++ ... .++|. .+++|++
T Consensus 42 ~~i~l~~g~~~d~---~~~~~v~~a~~~a~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 42 RKVNLSIGVYRDD---ADQPFVLECVKQATLG---TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SCEECCCSSCCCT---TSCCCCCHHHHTCCCC---SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred CceeeeeeEEECC---CCCEeecHHHHhcCcc---ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 5788888775 32 5677888888876222 11223 2344567778887765 222 35564 4999999
Q ss_pred HHHHHHHHHHhhcC-CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 170 ANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 170 A~~~Alk~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
|++.+..+++...+ ++.|++.+++|++........ |...+.+|......|..| .+++++.++
T Consensus 116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 178 (409)
T 4eu1_A 116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD 178 (409)
T ss_dssp HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence 99998887766544 589999999998775544332 222233222111112223 678888886
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccccc-ccCCCccee---ee
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIV---TM 322 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~-~~~~~pDiv---t~ 322 (480)
.. ++..+++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ..+... ..+..++++ +|
T Consensus 179 ~~-~~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 256 (409)
T 4eu1_A 179 KA-PEGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF 256 (409)
T ss_dssp HS-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred hC-CCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence 43 23456666555577778664 778899999999999999999999999876541 012222 123445543 89
Q ss_pred ccccc-cCcccccc---ccCHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHH
Q 011669 323 AKGIG-NGIPLGAV---VTTPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY 386 (480)
Q Consensus 323 sK~~g-~G~pig~v---~~~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~ 386 (480)
||.+| .|+|+||+ +.+++ +++.+.......+++.+++++.++.++|+... -++..++++++.++
T Consensus 257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (409)
T 4eu1_A 257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR 336 (409)
T ss_dssp TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 79999995 66777 55555433334566778899988888886321 12344455555556
Q ss_pred HHHHHHHhHHhcCc-eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHH
Q 011669 387 LKERLTALKDKYGI-IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464 (480)
Q Consensus 387 l~~~L~~l~~~~~~-~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~ 464 (480)
+++.|+++ ..+. +... ...|++.|+.+ + ...+...+.++||++.+++ ||+.+ ..+++
T Consensus 337 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gv~v~p~~------Ri~~~-~~~~~ 395 (409)
T 4eu1_A 337 LVSELKAC--GSVHDWSHIERQVGMMAYTGL--------T----REQVELLRSEYHIYMTLNG------RAAVS-GLNST 395 (409)
T ss_dssp HHHHHHHT--TCCSCCHHHHHSCSSEEECCC--------C----HHHHHHHHHHHCEECCTTC------EEEGG-GCCTT
T ss_pred HHHHHHhc--CCCCCcceecCCceEEEEeCC--------C----HHHHHHHHHcCCEEEcCCC------EEEEE-ecCHh
Confidence 65555543 1111 2222 23355555332 1 1223334446799998753 77764 46778
Q ss_pred HHHHHHHHHHHHHh
Q 011669 465 DADYLVDVMDYSLS 478 (480)
Q Consensus 465 ~id~~l~~l~~~l~ 478 (480)
+|++++++|+++++
T Consensus 396 ~i~~~~~~l~~~l~ 409 (409)
T 4eu1_A 396 NVEYVSQAIHNVTK 409 (409)
T ss_dssp THHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhC
Confidence 89999999998863
No 156
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=9.9e-25 Score=221.51 Aligned_cols=333 Identities=17% Similarity=0.102 Sum_probs=217.2
Q ss_pred eeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCC
Q 011669 87 DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS 166 (480)
Q Consensus 87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~s 166 (480)
+|+.+..-+..-+.||||..|.+.. + |+|.+++.+++....+ +..+...+++++|+++++. +.+++++|
T Consensus 18 ~~~~~~~~~~~~~~~id~~~~~~~~--~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~ 86 (399)
T 2oga_A 18 QGHMSSRAETPRVPFLDLKAAYEEL--R---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNS 86 (399)
T ss_dssp ---------CCCBCSCCHHHHHHHT--H---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESC
T ss_pred ccCcccccccccCcccccCcCCCCC--C---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecC
Confidence 4455544322237899999887654 2 9999999998876322 2357788999999999964 46889999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
|++|++.+++.++ ..+++.|++.+++||+...... .. |...+.+|... ..+..| .+++++.
T Consensus 87 Gt~a~~~~l~~~~-~~~gd~vl~~~~~~~~~~~~~~-~~------------g~~~~~~~~~~-~~~~~d----~~~l~~~ 147 (399)
T 2oga_A 87 GMDALQLALRGLG-IGPGDEVIVPSHTYIASWLAVS-AT------------GATPVPVEPHE-DHPTLD----PLLVEKA 147 (399)
T ss_dssp HHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHHHH-HT------------TCEEEEECBCS-SSSSBC----HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHHHH-HC------------CCEEEEEecCC-CCCCcC----HHHHHHh
Confidence 9999999998763 2356889999999998554332 22 22222222110 012233 5778777
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc-ccCCCcccccccCCCcceeee---
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTM--- 322 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg-r~G~~~~~~~~~~~~pDivt~--- 322 (480)
++ +++++|+++ +++|.+.+ +++|.++|++||+++|+||+|+.+. ..+ ...+..+|++++
T Consensus 148 i~----~~~~~v~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~ 210 (399)
T 2oga_A 148 IT----PRTRALLPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFY 210 (399)
T ss_dssp CC----TTEEEECCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECC
T ss_pred cC----CCCeEEEEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCC
Confidence 75 267777753 45676654 9999999999999999999997331 222 122334688876
Q ss_pred -cccccc-CccccccccC-HHHHHhhcCCCc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011669 323 -AKGIGN-GIPLGAVVTT-PEIAEVLTRRNY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387 (480)
Q Consensus 323 -sK~~g~-G~pig~v~~~-~~~~~~l~~~~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l 387 (480)
+|.+++ | ++|+++.+ +++++.+..... +.++..++++++++.++|+.++ .+.++.+++.+++
T Consensus 211 ~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l 287 (399)
T 2oga_A 211 PGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEY 287 (399)
T ss_dssp TTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHH
T ss_pred CCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 499997 8 99999986 788766543111 2234568999998888887553 3556666666666
Q ss_pred HHHHHHhHHhcCceeeEeccceeEE--EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----------------
Q 011669 388 KERLTALKDKYGIIGDVRGRGFLLG--VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------- 449 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~~v~g~g~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------- 449 (480)
++.|+++. .+... .....+..++ +.+... ....+.+.|.++||.+.++...
T Consensus 288 ~~~L~~~~-g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 356 (399)
T 2oga_A 288 LSGLAGLP-GIGLP-VTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEG 356 (399)
T ss_dssp HHHTTTCT-TCBCC-CCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTT
T ss_pred HHHhccCC-Ccccc-CCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCC
Confidence 66665431 11111 1111222222 333211 1456888899999999864210
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 450 ---------GNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 450 ---------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
.+.+||+++..+|++|+++++++|+++++++
T Consensus 357 ~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 357 SLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp SCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2579999999999999999999999988753
No 157
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=4e-24 Score=216.01 Aligned_cols=296 Identities=13% Similarity=0.051 Sum_probs=200.9
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
|....++++...+++++|+++++.+ + .++++||+||++.+++.+. .++++|++.++.||+..........
T Consensus 44 ~~~~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~------ 113 (386)
T 1cs1_A 44 HDYSRRGNPTRDVVQRALAELEGGA-G-AVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK------ 113 (386)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCS-E-EEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT------
T ss_pred cceeCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH------
Confidence 3445677888899999999999764 4 4556888999999999763 3678899999999874332111100
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
..|+....++. +| .+++++.++. ++++|++++++|++|.+.+ +++|.++|++||+++|
T Consensus 114 ---~~g~~~~~~~~-------~d----~~~l~~~i~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li 171 (386)
T 1cs1_A 114 ---RGCYRVLFVDQ-------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSV 171 (386)
T ss_dssp ---TTSCEEEEECT-------TC----HHHHHHHHHT----CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred ---hcCCEEEEeCC-------CC----HHHHHHhhcc----CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence 01333222221 12 5788888862 6789999999999998875 9999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~ 369 (480)
+||+|+++.... . . .++....+.+++|.+++ |.++ |++++++ ++++.+.......+.+.++++++++.++++
T Consensus 172 ~De~~~~~~~~~--~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 172 VDNTFLSPALQN--P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp EECTTTCTTTCC--G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred EECCCcccccCC--c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 999999775431 1 1 23433334478999985 5676 9999986 788877654444456678998888777776
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHH---h-cCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669 370 VIQKDKLQNNAHVVGSYLKERLTALKD---K-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435 (480)
Q Consensus 370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 435 (480)
.+ +...++..+..+++.+.|+++.. . ++.+. ..++.|.++.+++... ...+.+.
T Consensus 247 ~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 314 (386)
T 1cs1_A 247 TL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF 314 (386)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence 43 22334444455555555544310 0 11111 1245688888887321 2456777
Q ss_pred HHHcCceeecc--C--------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 436 MKEMGVLVGKG--G--------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 436 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
|.++||++... + ...+++||++++..++++++.+.++|+++.
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 88899998641 1 124799999999888999998888888754
No 158
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.93 E-value=1e-24 Score=227.98 Aligned_cols=338 Identities=15% Similarity=0.145 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHhccc-cccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceE
Q 011669 116 CHPYVVDSIVNQIKRIQH-STVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~-~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~i 187 (480)
.++++++++.+++..... ....|. .....++++.+++++ +.+.++|++|+||++|+..+++.... .+++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence 567788888887776421 122232 233444555555443 24567899999999999999987641 257899
Q ss_pred EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCC
Q 011669 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQG 265 (480)
Q Consensus 188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~ 265 (480)
++.+++|+++....... |...+.++......|..| .++|++.++.. ...++++|++...+|
T Consensus 186 lv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N 248 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALH-------------GGALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN 248 (500)
T ss_dssp EEEESCCTHHHHHHHHT-------------TCEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred EEeCCCcHhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 99999998776654433 222233322222234445 56777777531 112566666666677
Q ss_pred CCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccc----ccCC---Ccc-ee--eecccc-c-cCccc
Q 011669 266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFE----AHGV---VPD-IV--TMAKGI-G-NGIPL 332 (480)
Q Consensus 266 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~----~~~~---~pD-iv--t~sK~~-g-~G~pi 332 (480)
++|.+. +.+.+++|.++|++||+++|+||+|.++.+.+. .+..+. ..+. ..+ ++ ||||++ | .|+|+
T Consensus 249 PtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 327 (500)
T 3tcm_A 249 PTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327 (500)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred CCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence 888764 777899999999999999999999998765431 222211 1111 112 33 889999 5 69999
Q ss_pred ccccc---CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH-----------Hhhh-hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669 333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQK-DKLQNNAHVVGSYLKERLTALKDK 397 (480)
Q Consensus 333 g~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~-----------~i~~-~~~~~~~~~~~~~l~~~L~~l~~~ 397 (480)
||+++ ++++++.+.... ..+++.++++++++.++|+ ..++ +.+.++++++.+++.+.|+++
T Consensus 328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99998 888888776432 2456778888888887775 1111 234455555555665555543
Q ss_pred cCceeeEecc-ceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCceeeccCcCC-----CEEEEeCCCCCCHHHH
Q 011669 398 YGIIGDVRGR-GFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGVLVGKGGFYG-----NVFRITPPLCFTKEDA 466 (480)
Q Consensus 398 ~~~~~~v~g~-g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~~~i 466 (480)
+.+...... |++.|+.+...... ..........+.+.|.++||++.+|..++ +++||++. .+++++
T Consensus 404 -~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i 480 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKI 480 (500)
T ss_dssp -TTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTH
T ss_pred -CCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHH
Confidence 334444444 44555444211000 00000011223456677899999875443 47999965 899999
Q ss_pred HHHHHHHHHHHhh
Q 011669 467 DYLVDVMDYSLSK 479 (480)
Q Consensus 467 d~~l~~l~~~l~~ 479 (480)
++++++|.+++++
T Consensus 481 ~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 481 PAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 159
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.92 E-value=1.5e-23 Score=212.35 Aligned_cols=289 Identities=16% Similarity=0.053 Sum_probs=200.1
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
|....+.++...+++++|+++++. +.+++++||++|++.+++.+. .++++||+.++.||+..........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~~--~~gd~Vi~~~~~y~~~~~~~~~~~~------ 127 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAML--RPGDHVVIPDDAYGGTFRLIDKVFT------ 127 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHTGG------
T ss_pred ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCcchHHHHHHHHHH------
Confidence 455667889999999999999965 478999999999999999763 3678999999999875433211110
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
..|+....++. +| .++++++++ +++++|++|+++|++|.+.+ +++|+++|++||+++|
T Consensus 128 ---~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li 185 (392)
T 3qhx_A 128 ---GWNVEYTPVAL-------AD----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL 185 (392)
T ss_dssp ---GGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred ---hcCcEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence 11333332221 12 577888775 37899999999999998876 9999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAV 367 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~ 367 (480)
+||+|+.+ .. ....+..+|+++ ++|.+++ | +++|+++++ +++++.+....+..++..+|+.+++++..
T Consensus 186 ~D~~~~~~-~~------~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 258 (392)
T 3qhx_A 186 VDNTFASP-AL------QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG 258 (392)
T ss_dssp EECTTTCT-TT------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred EECCCccc-cc------CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 99999732 11 122234567775 8899995 5 789999998 68887776554556677889988888877
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHH
Q 011669 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET 429 (480)
Q Consensus 368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~ 429 (480)
++.+. ...++..++.+++.+.|++ ++.+..+ +|.|.++++++..+ ....
T Consensus 259 l~~l~--~~~~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~ 325 (392)
T 3qhx_A 259 LKTLV--LRMQRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAA 325 (392)
T ss_dssp HTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHH
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHH
Confidence 76432 2234445555555555544 3433332 66788999998431 2345
Q ss_pred HHHHHHHHHcCceeeccCc----------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669 430 LYIMDKMKEMGVLVGKGGF----------------------YGNVFRITPPLCFTKEDADYLVDVM 473 (480)
Q Consensus 430 ~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~~~id~~l~~l 473 (480)
..+.+.|...|+.+..|+. ..+.|||+.....++++|+.+.++|
T Consensus 326 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 326 EQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 6677777666766654431 2467999977666555555555443
No 160
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.92 E-value=1.1e-23 Score=213.68 Aligned_cols=333 Identities=11% Similarity=0.068 Sum_probs=212.2
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHH-hccc--cccc-cC-ChHHHHH----HHHHHHhCCCCCCEEEEeCCHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQH--STVL-YL-NHAIADF----AEALASKMPGNLKVVFFTNSGTE 169 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~--~~~~-~~-~~~~~~l----~e~L~~~~~~~~~~v~f~~sGse 169 (480)
+.++|+.++.+ .+|+|.+|+.+++. ...+ .... +. .+...++ +++++++++.+ ...++++||++
T Consensus 24 ~~~~~~~~~~~------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~ 96 (405)
T 2vi8_A 24 AKIELIASENF------VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ 96 (405)
T ss_dssp HSEECCTTCCC------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred cceeeccCccc------CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence 34677755422 28999999999885 3221 1111 21 2333444 46899988654 34456788899
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccccccc--cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
|++.+++.+. .+++.|++.+++|++..... ....+. ++..+.++.. ...+..| .+++++.+
T Consensus 97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~-~~~~~~d----~~~l~~~i 159 (405)
T 2vi8_A 97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVD-PETHVID----YDDVREKA 159 (405)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBC-TTTCSBC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEecccc-cccCCcC----HHHHHHHH
Confidence 9999999874 36788999888765543211 111111 0112222110 0112234 67788888
Q ss_pred HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Cccee--eecc
Q 011669 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAK 324 (480)
Q Consensus 248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDiv--t~sK 324 (480)
+.. ++++|++.|.+. |. ...+++|.++|++||+++|+||+|+ +|+.+.... ...+ .+|++ +++|
T Consensus 160 ~~~---~~~~v~~~~~~~--~~----~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~---~~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 160 RLH---RPKLIVAAAAAY--PR----IIDFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH---PNPVPYAHFVTTTTHK 226 (405)
T ss_dssp HHH---CCSEEEECCSSC--CS----CCCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS---CCSTTTCSEEEEESSS
T ss_pred Hhc---CCeEEEEeCCCC--Cc----cCCHHHHHHHHHHcCCEEEEEcccc-ccccccCcC---CCccccCCEEEEeccc
Confidence 631 457788755332 32 2239999999999999999999998 554431111 1111 46776 7899
Q ss_pred ccccCccccccccCHHHHHhhcCCCccccCCC-cHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 325 ~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~-~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
+++++.. |++++++++++.+.......++++ ++..++++.++|+.+.+ +++.++.+++.+++.+.|+++ .+..
T Consensus 227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 303 (405)
T 2vi8_A 227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL 303 (405)
T ss_dssp TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence 9985544 999999998887755332334444 56777777788887654 456777888888888888775 2221
Q ss_pred eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------c-CCCEEEEeCCC----CCCHHHHHH
Q 011669 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------F-YGNVFRITPPL----CFTKEDADY 468 (480)
Q Consensus 401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~-~~~~iRi~p~~----~~t~~~id~ 468 (480)
+. ..+.+.++++.+.... .....+.+.|.++||.+.++. . ..+.+||+++. .++++++++
T Consensus 304 ~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 304 VS-GGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp GG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred ec-CCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 11 1245778888874211 014567788889999998753 1 13679999886 578999999
Q ss_pred HHHHHHHHHhh
Q 011669 469 LVDVMDYSLSK 479 (480)
Q Consensus 469 ~l~~l~~~l~~ 479 (480)
++++|++++++
T Consensus 376 ~~~~l~~~~~~ 386 (405)
T 2vi8_A 376 IAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 161
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.92 E-value=2e-24 Score=219.10 Aligned_cols=337 Identities=15% Similarity=0.052 Sum_probs=201.3
Q ss_pred EEeccCCcccccCCCC--CHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCC------CCEEEE--eCCHHH
Q 011669 101 YLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGN------LKVVFF--TNSGTE 169 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~------~~~v~f--~~sGse 169 (480)
.|||..|.+....++. .|.|.+++.+.+... ....|.+ ....++++.+++++... .++|++ |+||++
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~ 107 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG 107 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence 5777777652222332 246788777665431 1222332 34456666666655321 567877 999999
Q ss_pred HHHHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 170 A~~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
|+..+++.++.+ .+++.|++.+++|+++....... |...+.+|......++-| .+++++.++
T Consensus 108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 170 (401)
T 7aat_A 108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence 999999876543 35789999999998765443322 222222221111112223 456666665
Q ss_pred ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Ccccccc-cCCCcc---eeee
Q 011669 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEA-HGVVPD---IVTM 322 (480)
Q Consensus 249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~~-~~~~pD---ivt~ 322 (480)
+. ..+++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.+|+..+. ..+.... .+..++ +.+|
T Consensus 171 ~~-~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 248 (401)
T 7aat_A 171 KI-PEKSIILLHACAHNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY 248 (401)
T ss_dssp TS-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred hC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence 42 3467888888888888876 4788899999999999999999999999876541 1222211 122233 3589
Q ss_pred ccccc-cCcccccccc---CHHH----HHhhcCCCccccCCCcHHHHHHHHHHHHHh------h--hhHHHHHHHHHHHH
Q 011669 323 AKGIG-NGIPLGAVVT---TPEI----AEVLTRRNYFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGSY 386 (480)
Q Consensus 323 sK~~g-~G~pig~v~~---~~~~----~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i------~--~~~~~~~~~~~~~~ 386 (480)
||.+| .|+|+||+++ +++. ...+.......+.+.+..+++++.+.++.- . -++..++++++.++
T Consensus 249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 328 (401)
T 7aat_A 249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ 328 (401)
T ss_dssp TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999775 6663 333332222334455556666555555310 0 12234455555555
Q ss_pred HHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHH
Q 011669 387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED 465 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~ 465 (480)
+.+.|+++... +.+... ...|++.|+.+ + ...+...+.++||.+.++ +||+.+. .++++
T Consensus 329 l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gi~v~~~------~Ris~~~-~~~~~ 388 (401)
T 7aat_A 329 LVSNLKKEGSS-HNWQHITDQIGMFCFTGL--------K----PEQVERLTKEFSIYMTKD------GRISVAG-VASSN 388 (401)
T ss_dssp HHHHHHHTTCC-SCCHHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTT
T ss_pred HHHHHHhcCCC-CCCceecCCcceEEecCC--------C----HHHHHHHHHhCCEeccCC------CeEEecc-CChhh
Confidence 55555543100 112222 23355555433 1 233444456789999754 5888764 45666
Q ss_pred HHHHHHHHHHHHh
Q 011669 466 ADYLVDVMDYSLS 478 (480)
Q Consensus 466 id~~l~~l~~~l~ 478 (480)
|++++++|+++++
T Consensus 389 i~~~~~~l~~~~~ 401 (401)
T 7aat_A 389 VGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998863
No 162
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=4.2e-23 Score=210.48 Aligned_cols=305 Identities=11% Similarity=0.072 Sum_probs=205.7
Q ss_pred cCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (480)
Q Consensus 112 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~ 191 (480)
.++|.+|+.++++.+ ....|....+.++...+++++++++++. ++++|++||++|++.+++.+. .++++|++.+
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l~--~~gd~vi~~~ 102 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLALL--RPGDEVVAAK 102 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEET
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 456888776665544 3333444445678899999999999864 479999999999999998663 3678899999
Q ss_pred CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (480)
Q Consensus 192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 271 (480)
+.|++.......... ..|+....++. | .+++++.++ +++++|+++++++++|.+.
T Consensus 103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~ 157 (412)
T 2cb1_A 103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP 157 (412)
T ss_dssp TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence 999864432211100 11333333221 2 567887774 3789999999999999887
Q ss_pred CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--ecccccc-CccccccccCH---------
Q 011669 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVTTP--------- 339 (480)
Q Consensus 272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G~pig~v~~~~--------- 339 (480)
+ +++|.++|++||+++|+||+|++++... . ..+..+|+++ ++|.+++ |.|+|+++..+
T Consensus 158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~ 227 (412)
T 2cb1_A 158 D----LEALATLAEEAGVALVVDNTFGAAGALC-R-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP 227 (412)
T ss_dssp C----HHHHHHHHHHHTCEEEEECGGGTTTTSC-C-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred c----HHHHHHHHHHcCCEEEEECCCccccccC-C-----ccccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence 5 9999999999999999999998663222 1 1123467765 8899985 78999887644
Q ss_pred -------------------HHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 340 -------------------EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 340 -------------------~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
++.+.++... ....+..+|..++.++..++.+ +...++..++.+++.+.|.+. +
T Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~ 301 (412)
T 2cb1_A 228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----P 301 (412)
T ss_dssp GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----T
T ss_pred ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----C
Confidence 3333332211 1112345777777777666544 233445556677777766553 3
Q ss_pred ceeeE------------------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--------------
Q 011669 400 IIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------- 447 (480)
Q Consensus 400 ~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------- 447 (480)
.+..+ ++.|.++.+.+ .+ ...+.+.|.+.||.+ .+.
T Consensus 302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 33322 35677888887 31 245666777889887 441
Q ss_pred --------------cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 448 --------------FYGNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 448 --------------~~~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
...+.+|+++....++++|+.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 0147899999999999999999988864
No 163
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=6e-24 Score=211.12 Aligned_cols=332 Identities=14% Similarity=0.138 Sum_probs=211.9
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a 178 (480)
.++|||.++... ..+|++.+++.+.... ....++.+...+|+++|+++++. +.+++++||++|+..+++.+
T Consensus 3 ~~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 3 HMMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp --CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHh
Confidence 356888877654 2668899988654211 11233567888999999999854 57889999999999998765
Q ss_pred HhhcCCceEEEEcCCccccccc--ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCc
Q 011669 179 RLYTGCNDIISLRNAYHGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGH 254 (480)
Q Consensus 179 r~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~ 254 (480)
.. ++++|++.+++|...... ..... |...+.+ ... .+..| .++++++++... ..+
T Consensus 74 ~~--~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v-~~~--~~~~d----~~~l~~~i~~~~~~~~~ 132 (347)
T 1jg8_A 74 TQ--RGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPV-PGK--NGAMD----PDDVRKAIRPRNIHFPR 132 (347)
T ss_dssp CC--TTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEE-CEE--TTEEC----HHHHHHHSCCSCTTSCC
T ss_pred cC--CCCEEEEcCcchhhhccccchhhcc------------CeEEEEe-cCC--CCccC----HHHHHHHhccccccccC
Confidence 43 568899988887542211 11111 2222222 110 11112 677888775310 126
Q ss_pred eEEEEEcccCCCC-cceeCCCChHHHHHHHHHHhCCEEEEcccccCcc---ccCCCcccccccCCCcceeeeccccccCc
Q 011669 255 VAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDIVTMAKGIGNGI 330 (480)
Q Consensus 255 ~a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg---r~G~~~~~~~~~~~~pDivt~sK~~g~G~ 330 (480)
+++|++++++|++ |.+ .+.+.+++|.++|++||+++|+||+|. ++ ..+....... .+...-++++||++++
T Consensus 133 ~~~v~~~~~~npt~G~~-~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~-- 207 (347)
T 1jg8_A 133 TSLIAIENTHNRSGGRV-VPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVPVKEYA-GYADSVMFCLSKGLCA-- 207 (347)
T ss_dssp EEEEEEESSBTTTTSBC-CCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCCHHHHH-HTCSEEEEESSSTTCC--
T ss_pred ceEEEEeccccccCCcc-CcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCChHHhc-ccccEEEEecccccCC--
Confidence 8899999888887 765 477789999999999999999999875 31 1221111010 1111114478999975
Q ss_pred ccc-ccccCHHHHHhhcCC--CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669 331 PLG-AVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (480)
Q Consensus 331 pig-~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 407 (480)
|+| ++++++++++.+... ..++++..+++.++++.++|+...+ . .++..+..+++++.|+++ .+... .....
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~ 282 (347)
T 1jg8_A 208 PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-R-LKEDHENARFLALKLKEI--GYSVN-PEDVK 282 (347)
T ss_dssp SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-T-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCC
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHhc--Cceec-cCCCc
Confidence 467 466788887765432 1233444566777777777764322 2 233345567777777665 22211 12345
Q ss_pred ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|.++++.+.... .....+.+.|+++||.+.+++ .+++||+++..++++|+++++++|++++++
T Consensus 283 ~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 283 TNMVILRTDNLK-------VNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp SSEEEEECTTSS-------SCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEccccc-------CCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 677787763111 114568888889999998765 568999998889999999999999998764
No 164
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.92 E-value=2.4e-24 Score=227.01 Aligned_cols=351 Identities=10% Similarity=0.046 Sum_probs=209.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHH-HhCCC-----CCCEEEEeCCHHHHHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALA-SKMPG-----NLKVVFFTNSGTEANELA 174 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~-~~~~~-----~~~~v~f~~sGseA~~~A 174 (480)
++||..|. .++.+|.+++++.+++....+....+..+...++++.+. +.... +.++|++|+|++||+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 46665554 357788999988887753323222233455555555443 32221 347899999999999999
Q ss_pred HHHH--Hhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669 175 IMMA--RLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (480)
Q Consensus 175 lk~a--r~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (480)
++.. +.. .+++.|++.+++|+++...+..... |...+++|....+.|..| .++++++++
T Consensus 182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~~d----~~~l~~~~~--- 243 (546)
T 2zy4_A 182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQYP----DSELDKLKD--- 243 (546)
T ss_dssp HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence 9863 222 3568899999999998765432110 222222222222223333 456665542
Q ss_pred CCceEEEEEcccCCCCcceeCCCChHHHHHHHH--HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-c
Q 011669 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI--KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-N 328 (480)
Q Consensus 252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~--~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~ 328 (480)
.++++|++...+|++|.+. +.+.+++|.++| ++||+++|+||+|.+|......+... ..+....+.+|||.+| .
T Consensus 244 -~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 244 -PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp -TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred -CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence 3677777777788888765 778899999999 78999999999999886432111111 1123334558999998 7
Q ss_pred CccccccccCHH-HHHhhcCC------------------------------------CccccCCCcHHHHHHHH--HHHH
Q 011669 329 GIPLGAVVTTPE-IAEVLTRR------------------------------------NYFNTFGGNPVCTAAGH--AVLK 369 (480)
Q Consensus 329 G~pig~v~~~~~-~~~~l~~~------------------------------------~~~~t~~~~~~~~aaa~--a~L~ 369 (480)
|+|+||++++++ +++.+... ....+.+.+.+.+.++. +...
T Consensus 321 GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~a 400 (546)
T 2zy4_A 321 GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFA 400 (546)
T ss_dssp GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHH
T ss_pred CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHH
Confidence 999999999875 66655210 01233455666665531 1122
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH----------HHHHHHHHHHHH
Q 011669 370 VIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK----------AETLYIMDKMKE 438 (480)
Q Consensus 370 ~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~----------~~~~~~~~~l~~ 438 (480)
.+++ +.+.+++++.-+..++.+.+... .+........|+++|+++..-... .+.. .....+.+.+.+
T Consensus 401 ll~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~wl~~~~~~~~~l~~ll~~ 478 (546)
T 2zy4_A 401 LMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAK-LYGEAFSEWAVKQSSTGDMLFRIADE 478 (546)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHH-HHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcc-cccHHHHHHhhccCCHHHHHHHHHHH
Confidence 2332 34444444333333332322221 222112234466778876310000 0000 012346677889
Q ss_pred cCceeeccCcC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 439 MGVLVGKGGFY---GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 439 ~Gv~v~~~~~~---~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
+||.+.||..| .+++||++. ..+++++++++++|++++++
T Consensus 479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 99999998654 368999965 45899999999999988753
No 165
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.92 E-value=2e-24 Score=216.87 Aligned_cols=316 Identities=13% Similarity=0.132 Sum_probs=201.2
Q ss_pred cccCCCCCHH---HHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCce
Q 011669 110 TVCCGHCHPY---VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND 186 (480)
Q Consensus 110 ~~~lGh~~p~---v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ 186 (480)
..++||++|. +.+++.+.+... ..+..+...+++++|+++++. +.+++++||++|++.+++.++ ..++++
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~ 80 (374)
T 3uwc_A 8 YSYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDE 80 (374)
T ss_dssp SCCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCE
T ss_pred eeccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCE
Confidence 3444444443 556665555443 234578889999999999965 478999999999999998763 236789
Q ss_pred EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCC
Q 011669 187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGV 266 (480)
Q Consensus 187 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~ 266 (480)
|++..++||+........ |...+.++.. ..+..| .+++++.++ +++++|+ | +++
T Consensus 81 v~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~--~~~~~d----~~~l~~~~~----~~~~~v~--~-~n~ 134 (374)
T 3uwc_A 81 VITCANTFIASVGAIVQA-------------GATPVLVDSE--NGYVID----PEKIEAAIT----DKTKAIM--P-VHY 134 (374)
T ss_dssp EEEESSSCHHHHHHHHHT-------------TCEEEEECBC--TTSSBC----GGGTGGGCC----TTEEEEC--C-BCG
T ss_pred EEECCCccHHHHHHHHHc-------------CCEEEEEecC--CCCCcC----HHHHHHhCC----CCceEEE--E-eCC
Confidence 999999999876543322 2222222211 112223 345665553 3677777 4 446
Q ss_pred CcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HH
Q 011669 267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PE 340 (480)
Q Consensus 267 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~ 340 (480)
+|.+.+ +++|.++|++||+++|+||+|+.+. .+.....+..+|++++| |.+++ |. .|+++++ ++
T Consensus 135 ~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~ 204 (374)
T 3uwc_A 135 TGNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDE 204 (374)
T ss_dssp GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHH
T ss_pred cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHH
Confidence 776654 9999999999999999999998432 22233445557988877 99987 75 7888765 45
Q ss_pred HHHhhcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-cc
Q 011669 341 IAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GR 407 (480)
Q Consensus 341 ~~~~l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~ 407 (480)
+++.+.... .+.++..+++.+++++..++.+ +++.++.+++.+++++.|.++...+....... +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 282 (374)
T 3uwc_A 205 YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY 282 (374)
T ss_dssp HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE
T ss_pred HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc
Confidence 655443211 1223344666666665554432 44667777777777777766521011111111 11
Q ss_pred ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCC
Q 011669 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFT 462 (480)
Q Consensus 408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t 462 (480)
..+..+.+... ....+.+.|.++||.+.++.. ..+.+||+++..+|
T Consensus 283 ~~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t 353 (374)
T 3uwc_A 283 HVFHIYVLRVK---------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLT 353 (374)
T ss_dssp CCCSSEEEEET---------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSC
T ss_pred eeeEEEEEEcC---------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCC
Confidence 11111222111 146788899999999987631 01689999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011669 463 KEDADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~ 479 (480)
++||++++++|++++++
T Consensus 354 ~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 354 EEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 166
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=1.3e-23 Score=211.27 Aligned_cols=318 Identities=12% Similarity=0.086 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC----CCEEEEeCCHHHHHHHHHHHHHh-hcCCceEEEE
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN----LKVVFFTNSGTEANELAIMMARL-YTGCNDIISL 190 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~----~~~v~f~~sGseA~~~Alk~ar~-~~~~~~ii~~ 190 (480)
.+|+|.+|+.+++.. |.... ......++++++++.+... .++++|++||++|++.+++.+.. ..++++|+++
T Consensus 16 ~~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--HTSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC--TTSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc--cCCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 468888887654332 11100 0124567778888887542 47899999999999999997641 1356788888
Q ss_pred c-CCcccccccccccccCCCccccccCCCeeEecCCC-CcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCc
Q 011669 191 R-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG 268 (480)
Q Consensus 191 ~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G 268 (480)
+ +.||.......... |...+.+|. .. .+..| .++|+++++. +++++|+++++++++|
T Consensus 93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~--~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 93 STGTFSDRFADCLRSY------------GAQVDVVRPLKI--GESVP----LELITEKLSQ---NSYGAVTVTHVDTSTA 151 (385)
T ss_dssp CSSHHHHHHHHHHHHT------------TCEEEEECCSST--TSCCC----HHHHHHHHHH---SCCSEEEEESEETTTT
T ss_pred cCCcchHHHHHHHHHc------------CCceEEEecCCC--CCCCC----HHHHHHHHhc---CCCCEEEEEccCCCcC
Confidence 4 45665432222111 222222222 11 12223 6788888863 2578899999999999
Q ss_pred ceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHH-
Q 011669 269 IIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAE- 343 (480)
Q Consensus 269 ~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~- 343 (480)
.+.+ +++|.++|++| |+++|+||+|+ +|.. .+....+ .+|+++ ++|+++++.++|++++++++++
T Consensus 152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDY 221 (385)
T ss_dssp EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHH
T ss_pred eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHH
Confidence 8876 99999999999 99999999997 4322 1222222 356664 5799986666799999998876
Q ss_pred hhcC----------------------CCc--cc-cCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH-HHh
Q 011669 344 VLTR----------------------RNY--FN-TFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL-TAL 394 (480)
Q Consensus 344 ~l~~----------------------~~~--~~-t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L-~~l 394 (480)
.+.. ... .. .++.|+.+++++.++|+.+.+. ...++.+++.+++.+.| +++
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5421 000 01 1356778888888888876543 45666777777777777 554
Q ss_pred HHhcCcee-eE-e-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEe-CC---CCCCHH
Q 011669 395 KDKYGIIG-DV-R-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRIT-PP---LCFTKE 464 (480)
Q Consensus 395 ~~~~~~~~-~v-~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~-p~---~~~t~~ 464 (480)
.+..+. .. . ..+.++++.+. . ...+.+.|.++||.+.++.. ..+++||+ .+ +.+|++
T Consensus 302 --g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e 368 (385)
T 2bkw_A 302 --QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLP 368 (385)
T ss_dssp --CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCT
T ss_pred --CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHH
Confidence 221111 00 0 24677777762 1 45688888899999988643 24789999 44 357999
Q ss_pred HHHHHHHHHHHHHhhC
Q 011669 465 DADYLVDVMDYSLSKM 480 (480)
Q Consensus 465 ~id~~l~~l~~~l~~~ 480 (480)
|+++++++|+++++++
T Consensus 369 ~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 369 YMKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 167
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.91 E-value=2.5e-23 Score=210.31 Aligned_cols=310 Identities=14% Similarity=0.130 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (480)
Q Consensus 117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG 196 (480)
+|++.+++.+++.+..+ +..+...+++++|+++++. +++++++||++|++.+++.++ ..++++|++.+++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~ 91 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS 91 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence 48999999998877422 2467889999999999964 579999999999999999763 2367889999999998
Q ss_pred ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 276 (480)
...... .. |+..+.++... ..+..| .+++++.++ +++++|++++ ++|.+.+
T Consensus 92 ~~~~~~-~~------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~----~~~~~v~~~~---~~G~~~~---- 142 (393)
T 1mdo_A 92 TLNMIV-LL------------GANPVMVDVDR-DTLMVT----PEHIEAAIT----PQTKAIIPVH---YAGAPAD---- 142 (393)
T ss_dssp HHHHHH-HT------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEECCBC---GGGCCCC----
T ss_pred HHHHHH-HC------------CCEEEEEeccC-CcCCCC----HHHHHHhcC----CCceEEEEeC---CCCCcCC----
Confidence 654332 22 22222222111 112223 577887775 2678888765 3565544
Q ss_pred HHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCCc
Q 011669 277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRNY 350 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~~ 350 (480)
+++|.++|++||+++|+||+|+ |+.+.+ .. .+. +|++++| |.+++| ++|+++.+ +++++.+.....
T Consensus 143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~ 214 (393)
T 1mdo_A 143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF 214 (393)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999998 333333 21 222 7888665 888766 78999986 788776542111
Q ss_pred -c-------------------cc----CCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee----
Q 011669 351 -F-------------------NT----FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG---- 402 (480)
Q Consensus 351 -~-------------------~t----~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---- 402 (480)
+ .+ +..+++.++++.+.++.+ ++..++.+++.+++++.|.++. +....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~ 290 (393)
T 1mdo_A 215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLP--FQPLSLPSW 290 (393)
T ss_dssp TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSS--CEECCCCSS
T ss_pred cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC--cccccCCCC
Confidence 0 01 334778777777766643 3456666667777777776541 11110
Q ss_pred eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----------------------CCEEEEeCCC
Q 011669 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----------------------GNVFRITPPL 459 (480)
Q Consensus 403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~~iRi~p~~ 459 (480)
..++.+.++++.+..... ......+.+.|.++||.+.++... .+.+||++..
T Consensus 291 ~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~ 365 (393)
T 1mdo_A 291 EHIHAWHLFIIRVDEARC-----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP 365 (393)
T ss_dssp CEECCCSCEEEECCHHHH-----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT
T ss_pred CCCceeEEEEEEeccccc-----ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCC
Confidence 123445677887732000 011467888999999999875311 2379999888
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 011669 460 CFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 460 ~~t~~~id~~l~~l~~~l~~ 479 (480)
.+|++|+++++++|+++++.
T Consensus 366 ~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 366 DMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp TCCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999998764
No 168
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=5.3e-23 Score=208.79 Aligned_cols=291 Identities=14% Similarity=0.025 Sum_probs=197.3
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
|....+.++...+++++|+++++.+ .+++++||++|++.+++.+. .++++|++.++.||+...........
T Consensus 57 ~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~----- 127 (398)
T 1gc0_A 57 HFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIGE----- 127 (398)
T ss_dssp ------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGGG-----
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHHH-----
Confidence 3345567899999999999998653 67889999999999999764 36788999999999865543221110
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
.|+....++. .| .+++++.++ +++++|+++++++++|.+.+ +++|.++|++||+++|
T Consensus 128 ----~g~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li 184 (398)
T 1gc0_A 128 ----FGVKLRHVDM-------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVV 184 (398)
T ss_dssp ----GTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEE
T ss_pred ----cCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEE
Confidence 1233222221 12 567777774 37899999999999998875 9999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCcc-ccCCCcHHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYF-NTFGGNPVCTAAGHAVL 368 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~~-~t~~~~~~~~aaa~a~L 368 (480)
+||+|+.+. .+ .. . .++..+.+.+++|.+++ |.|+ |+++++++.++ .+...... .+...+++.++++.+++
T Consensus 185 ~D~~~~~~~-~~-~~--~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (398)
T 1gc0_A 185 VDNTYCTPY-LQ-RP--L-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGI 259 (398)
T ss_dssp EECTTTHHH-HC-CG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHH
T ss_pred EECCCcccc-cC-Cc--h-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhcc
Confidence 999998442 22 11 1 23444555588999995 7888 89999988665 45543333 34567899888888887
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHHH
Q 011669 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAETL 430 (480)
Q Consensus 369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~ 430 (480)
+.+ +...++..+..+.+.+.|++. +.+.. .++.|.++.+++... ..
T Consensus 260 ~~~--~~~~~~~~~~~~~l~~~L~~~----~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~ 323 (398)
T 1gc0_A 260 KTL--NLRMDRHCANAQVLAEFLARQ----PQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IG 323 (398)
T ss_dssp TTH--HHHHHHHHHHHHHHHHHHHTC----TTEEEEEEC----------------CCTTEEEEEETTH----------HH
T ss_pred chH--HHHHHHHHHHHHHHHHHHhcC----CCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HH
Confidence 643 233444555555565555542 21111 135688888887321 23
Q ss_pred HHHHHHHHcCceeec---cCc-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 431 YIMDKMKEMGVLVGK---GGF-------------------------YGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 431 ~~~~~l~~~Gv~v~~---~~~-------------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
.+.+.+.+.|+.+.. |+. ..+.+||++++..++++|+.+.++|+++
T Consensus 324 ~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 324 AGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 455666777877644 211 1378999999999999999999998864
No 169
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.2e-23 Score=214.92 Aligned_cols=324 Identities=16% Similarity=0.133 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHh-cccc--ccccC--Ch---HHHHHH-HHHHHhCCCCCCEEEE-eCCHHHHHHHHHHHHHhhcCC
Q 011669 115 HCHPYVVDSIVNQIKR-IQHS--TVLYL--NH---AIADFA-EALASKMPGNLKVVFF-TNSGTEANELAIMMARLYTGC 184 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~-~~~~--~~~~~--~~---~~~~l~-e~L~~~~~~~~~~v~f-~~sGseA~~~Alk~ar~~~~~ 184 (480)
+.+|+|++|+.+++.+ ..+. ...+. .. ...+++ +++++.++.+ .+.+ ++||++||+.+++.++. ++
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~~~v~~~sGs~a~~~a~~~~~~--~G 131 (447)
T 3h7f_A 56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--FANVQPHSGAQANAAVLHALMS--PG 131 (447)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHHCC--TT
T ss_pred CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHHHHHHhcC--CC
Confidence 4589999999988753 2211 11111 12 335567 8899888643 4555 89999999999998754 67
Q ss_pred ceEEEEcCCccccc-ccc-cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE-c
Q 011669 185 NDIISLRNAYHGNA-AGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-E 261 (480)
Q Consensus 185 ~~ii~~~~~yhG~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~-e 261 (480)
+.|++.+++|++.. .+. ....+. .+..++++... ..+..| .++++++++.. ++++|++ .
T Consensus 132 d~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~~~---~~~~i~~~~ 193 (447)
T 3h7f_A 132 ERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDP-ATHLID----MDAVRATALEF---RPKVIIAGW 193 (447)
T ss_dssp CEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCT-TTCSCC----HHHHHHHHHHH---CCSEEEEEC
T ss_pred CEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCc-ccCCcC----HHHHHHHHHhc---CCeEEEEcC
Confidence 89999999987732 221 111111 11122222110 011134 67888888532 3456666 5
Q ss_pred ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCccee--eeccccccCccccccccC
Q 011669 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTT 338 (480)
Q Consensus 262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~ 338 (480)
|+++.++ ++++|+++|++||+++|+||+| .|+.+.| ...... . ..|++ +++|+++ |++.|+++++
T Consensus 194 ~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~~-~--~~di~~~s~sK~l~-G~~gG~i~~~ 261 (447)
T 3h7f_A 194 SAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSPV-P--HADVVSTTVHKTLG-GGRSGLIVGK 261 (447)
T ss_dssp SSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCST-T--TCSEEEEESSGGGC-CCSCEEEEEC
T ss_pred CCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCCC-C--CCcEEEecCCcCCC-CCCeEEEEEC
Confidence 5554432 5999999999999999999997 5554445 221111 1 23555 6789985 6888999999
Q ss_pred HHHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--ccceeEE
Q 011669 339 PEIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGFLLG 412 (480)
Q Consensus 339 ~~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~~~ 412 (480)
+++++.+......++++++ ...++++.+++..+.+ +++.+++.++.+++.+.|+++....+.+..+. ..+.+++
T Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~ 341 (447)
T 3h7f_A 262 QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVL 341 (447)
T ss_dssp GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEE
T ss_pred HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEE
Confidence 9988877654333444443 3335555555655433 34667777778888887766421111122222 2345666
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceee----cc----CcCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHhh
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KG----GFYGNVFRITPPLC----FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~----~~~~~~iRi~p~~~----~t~~~id~~l~~l~~~l~~ 479 (480)
+++..... ....+.+.|.++||++. ++ ....+.+||+++.. ++++|+++++++|++++++
T Consensus 342 ~~~~~~~~-------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 342 VDLRDSPL-------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp EECTTSSC-------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred EEcCCCCC-------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 66532211 13456666777899988 33 12246799998765 6799999999999998853
No 170
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.91 E-value=1.1e-22 Score=211.21 Aligned_cols=316 Identities=17% Similarity=0.156 Sum_probs=206.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccC--------ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---
Q 011669 113 CGHCHPYVVDSIVNQIKRIQHSTVLYL--------NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--- 181 (480)
Q Consensus 113 lGh~~p~v~~A~~~~~~~~~~~~~~~~--------~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--- 181 (480)
.+|.+|++++++.++.. +.+ .|. .+...++++++++.++.+. .+++++||++|+..|+++++.+
T Consensus 75 ~~~~~p~v~~~~~~~~~---~~~-~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~ 149 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFA---DLH-PYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHED 149 (474)
T ss_dssp CCCCCCHHHHHHHHTTS---SCC-TTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---hcC-CCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHh
Confidence 35888999998887621 111 122 2456788889998886543 4668899999999999988753
Q ss_pred c----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669 182 T----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (480)
Q Consensus 182 ~----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~ 257 (480)
. ++++||+.+ .+|+....+.... |+..+.+|... .+..| +++|++.++ +++++
T Consensus 150 ~Gd~~~r~~Vlv~~-~~h~~~~~~~~~~------------G~~vv~v~~~~--~~~~d----~~~L~~~i~----~~t~~ 206 (474)
T 1wyu_B 150 RGEGRTRRVVLVPD-SAHGSNPATASMA------------GYQVREIPSGP--EGEVD----LEALKRELG----PHVAA 206 (474)
T ss_dssp TTCTTTCCEEEEET-TSCTHHHHHHHHT------------TCEEEEECBCT--TSSBC----HHHHHHHCS----TTEEE
T ss_pred cCCccCCCEEEEeC-CcChhhHHHHHHC------------CCEEEEecCCC--CCCcC----HHHHHHhhC----CCceE
Confidence 1 233788877 4556555544333 22222222111 12123 678888874 36888
Q ss_pred EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--cccccc-----Cc
Q 011669 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-----GI 330 (480)
Q Consensus 258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~-----G~ 330 (480)
|++++.+ ++|.+. +.+++|.++|++||+++|+||+|..+ ..| .. ....+ .+|++++ +|.+++ |+
T Consensus 207 v~~~~pn-~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~ 277 (474)
T 1wyu_B 207 LMLTNPN-TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-WA-RPGDM--GFDVVHLNLHKTFTVPHGGGGP 277 (474)
T ss_dssp EEECSSC-TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-TC-CHHHH--TCSEEECCTTTTTCCCCTTSCC
T ss_pred EEEECCC-CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-CC-CcccC--CCcEEEEeCccccccCCCCCCC
Confidence 8888754 577662 34999999999999999999999643 233 11 11122 3688765 799862 46
Q ss_pred cccccccCHHHHHhhcCCC-------------------ccccCCCcHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHH
Q 011669 331 PLGAVVTTPEIAEVLTRRN-------------------YFNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLK 388 (480)
Q Consensus 331 pig~v~~~~~~~~~l~~~~-------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~ 388 (480)
|+|++++++++++.+.... ...++++|+++++++++.++.+..+.+ .++..++.+++.
T Consensus 278 ~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~ 357 (474)
T 1wyu_B 278 GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK 357 (474)
T ss_dssp CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887765210 113445788888888888876544444 666777788888
Q ss_pred HHHHHhHHhcCceeeEecccee--EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCH
Q 011669 389 ERLTALKDKYGIIGDVRGRGFL--LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTK 463 (480)
Q Consensus 389 ~~L~~l~~~~~~~~~v~g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~ 463 (480)
+.|+++ .+..+ .+.+.+ +++.+ .. ......+.+.|.++||++..... ..+++||+++..+|+
T Consensus 358 ~~L~~~--g~~~~---~~~~~~~~~~~~~-~~-------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~ 424 (474)
T 1wyu_B 358 ELLKEK--GYRVP---YDGPSMHEFVAQP-PE-------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK 424 (474)
T ss_dssp HHHHHT--TCBCS---SCSSCCSCEEEBC-ST-------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCH
T ss_pred HHHhhc--CcEec---CCCCcceEEEEEc-CC-------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCH
Confidence 888774 33221 112222 34444 11 11246788889999998632111 147899999988899
Q ss_pred HHHHHHHHHHHHHHh
Q 011669 464 EDADYLVDVMDYSLS 478 (480)
Q Consensus 464 ~~id~~l~~l~~~l~ 478 (480)
+++++++++|+++++
T Consensus 425 e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 425 ETLEAFAEAMGALLK 439 (474)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 171
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.91 E-value=9.4e-23 Score=212.85 Aligned_cols=338 Identities=12% Similarity=0.058 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHHHHhcc------ccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHHHHHHHhhc--CC
Q 011669 116 CHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAIMMARLYT--GC 184 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~Alk~ar~~~--~~ 184 (480)
.+..+.+++.+.+.+.. +....+..+...++++.+.++.+ .+.++|++|+|+++|+..++++..... ++
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 35677777777777532 11112223455666666665542 356789999999999999998664311 13
Q ss_pred ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC-ceEEEEEccc
Q 011669 185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-HVAGFLSESI 263 (480)
Q Consensus 185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~-~~a~vi~epi 263 (480)
+.|++..++|..+....... |...+.++......|+-| .++|++.++..... ++++|++...
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~np 244 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIINP 244 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEESS
T ss_pred CEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEECC
Confidence 48999999998766544332 222333332222234445 67888888643221 4677777677
Q ss_pred CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccccc----------CC-Ccceeeecccc-c-cC
Q 011669 264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH----------GV-VPDIVTMAKGI-G-NG 329 (480)
Q Consensus 264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~~~----------~~-~pDivt~sK~~-g-~G 329 (480)
+|++|.+. +.+.+++|.++|++||+++|+||+|..+.+.+. .+..+... ++ ..-+.+|||.+ | .|
T Consensus 245 ~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G 323 (498)
T 3ihj_A 245 GNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG 323 (498)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS
T ss_pred CCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc
Confidence 78888764 777899999999999999999999998765441 12222110 01 11233789999 5 79
Q ss_pred ccccccc---cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH-----------Hhhh-hHHHHHHHHHHHHHHHHHHHh
Q 011669 330 IPLGAVV---TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQK-DKLQNNAHVVGSYLKERLTAL 394 (480)
Q Consensus 330 ~pig~v~---~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~-----------~i~~-~~~~~~~~~~~~~l~~~L~~l 394 (480)
+|+||++ .++++++.+.... ....+.+.++++++.++++ .+++ +...+++++..+++.+.|++
T Consensus 324 ~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~- 401 (498)
T 3ihj_A 324 YRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ- 401 (498)
T ss_dssp SCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999998 6889888776532 2445667888877766663 1111 23334445555555555544
Q ss_pred HHhcCceeeEecc-ceeEEEEEecCCCc-----CCCCHHHHHH-HHHHHHHcCceeeccCcCC-----CEEEEeCCCCCC
Q 011669 395 KDKYGIIGDVRGR-GFLLGVEFVTDRQL-----KTPAKAETLY-IMDKMKEMGVLVGKGGFYG-----NVFRITPPLCFT 462 (480)
Q Consensus 395 ~~~~~~~~~v~g~-g~~~~i~~~~~~~~-----~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t 462 (480)
++.+...... |+++|+.+...... ...... ... +.+.|.++||++.+|..++ +++|+++ ..+
T Consensus 402 ---~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~ 475 (498)
T 3ihj_A 402 ---VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPP 475 (498)
T ss_dssp ---STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSC
T ss_pred ---CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCC
Confidence 3444444444 44556555211000 000000 122 3556677899999975443 4899995 589
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011669 463 KEDADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~ 479 (480)
++++++++++|.+++++
T Consensus 476 ~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 476 VEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 172
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=4e-24 Score=217.80 Aligned_cols=319 Identities=14% Similarity=0.089 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHhcc---ccc-----cccCChHHHHHH-HHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669 115 HCHPYVVDSIVNQIKRIQ---HST-----VLYLNHAIADFA-EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~---~~~-----~~~~~~~~~~l~-e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~ 185 (480)
+.||+|++|+.+++.+.. +.. .....+...+++ +++++.++.+.+.+ +++||++|++.+++.+.. +++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~~--~gd 117 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALLQ--PGD 117 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHCC--TTC
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhcC--CCC
Confidence 468999999999885421 111 111123344444 77888877654444 568889999999987643 677
Q ss_pred eEEEEcCCccccccccc--ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEc-c
Q 011669 186 DIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE-S 262 (480)
Q Consensus 186 ~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~e-p 262 (480)
.|++..+.|++...... ...+. ++..++++.. ..+..| .++++++++.. ++++|+++ |
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~~---~~~~v~~~~~ 178 (420)
T 3gbx_A 118 TVLGMNLAQGGHLTHGSPVNFSGK----------LYNIVPYGID--ESGKID----YDEMAKLAKEH---KPKMIIGGFS 178 (420)
T ss_dssp EEEEEEEC------------CHHH----------HSEEEEEEEC--TTCSCC----HHHHHHHHHHH---CCSEEEECCT
T ss_pred EEEecchhhcceeccchhhhhccc----------ceeEEeccCC--ccCCcC----HHHHHHHHHhc---CCeEEEEecC
Confidence 88888777755221111 11110 1122222111 112234 67888888642 46777875 4
Q ss_pred cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--eccccccCccccccccCH
Q 011669 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTP 339 (480)
Q Consensus 263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~ 339 (480)
+++ ...+ +++|+++|++||+++|+||+|. |+.+.| .+... .. .+|+++ +||+++ |.+.|++++++
T Consensus 179 ~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~ 246 (420)
T 3gbx_A 179 AYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKG 246 (420)
T ss_dssp TCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESS
T ss_pred ccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcC
Confidence 432 2333 9999999999999999999974 555445 22211 11 278876 679997 45568999987
Q ss_pred ---HHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--cccee
Q 011669 340 ---EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGFL 410 (480)
Q Consensus 340 ---~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~ 410 (480)
++++.+....+.++++++ ...++++.+++..+.+ +++.+++.++.+++++.|.+. + +..+. ..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~ 321 (420)
T 3gbx_A 247 GDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----G-YKVVSGGTENHL 321 (420)
T ss_dssp CCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----T-CEEGGGSCSSSE
T ss_pred CcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----C-CeeccCCCCCeE
Confidence 777766554333334433 3333333334443322 345677777778888777663 2 11222 35667
Q ss_pred EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec-------cCcC-CCEEEEeCCCC----CCHHHHHHHHHHHHHHHh
Q 011669 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK-------GGFY-GNVFRITPPLC----FTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------~~~~-~~~iRi~p~~~----~t~~~id~~l~~l~~~l~ 478 (480)
+++.+..... ....+.+.|.++||++.+ +..+ .+.+||+++.. .+++++++++++|+++++
T Consensus 322 ~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 322 FLLDLVDKNL-------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp EEEECGGGTC-------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCC-------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 7777643211 145677788889999987 3222 35699998765 458999999999999876
Q ss_pred h
Q 011669 479 K 479 (480)
Q Consensus 479 ~ 479 (480)
+
T Consensus 395 ~ 395 (420)
T 3gbx_A 395 N 395 (420)
T ss_dssp T
T ss_pred C
Confidence 4
No 173
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.1e-23 Score=213.03 Aligned_cols=323 Identities=12% Similarity=0.052 Sum_probs=205.9
Q ss_pred CCCHHHHHHHHHHHHhccccccc-c-CC----hHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhc----
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVL-Y-LN----HAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT---- 182 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~-~-~~----~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~---- 182 (480)
|+++.+.+++.+++....+.... + .. ....+++++++++++.+ .+.+++++||+||+..+++.++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 56689999999998875432211 1 12 33457778888888755 5689999999999999999987642
Q ss_pred C--CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669 183 G--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (480)
Q Consensus 183 ~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ 260 (480)
+ ++.|++..++|.+....+. ..+. .+..++... ..+..| .++|+++++ +++++|++
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~-~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~~~~v~~ 212 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAY-YFGM----------KLRHVELDP---TTYQVD----LGKVKKFIN----KNTVLLVG 212 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHH-HSCC----------EEEEECBCT---TTCSBC----TTTTGGGCC----SSEEEEEE
T ss_pred CCCCceEEEeCCccHHHHHHHH-HcCC----------eEEEEecCc---ccCcCC----HHHHHHHHh----hCCEEEEE
Confidence 2 3678888777765433322 2221 122233221 011122 356666664 36899999
Q ss_pred cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-----CC-C--cccccccCCCcceee--eccccccCc
Q 011669 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-----GS-H--FWGFEAHGVVPDIVT--MAKGIGNGI 330 (480)
Q Consensus 261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-----G~-~--~~~~~~~~~~pDivt--~sK~~g~G~ 330 (480)
+.+++++|.+.+ +++|+++|++||+++|+||+|+++.+. |. . .+.+...++ |+++ +.|.+++|.
T Consensus 213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~ 286 (497)
T 3mc6_A 213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK 286 (497)
T ss_dssp ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence 999999998866 889999999999999999999876432 10 1 122333444 6654 459888889
Q ss_pred cccccccCHHHHHhhcCCC----ccc-----cCC--CcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHH
Q 011669 331 PLGAVVTTPEIAEVLTRRN----YFN-----TFG--GNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD 396 (480)
Q Consensus 331 pig~v~~~~~~~~~l~~~~----~~~-----t~~--~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~ 396 (480)
++|+++++++.+....... ..+ ++. .+....++..++++.+.++ +..++..++.+++++.|++.
T Consensus 287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-- 364 (497)
T 3mc6_A 287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN-- 364 (497)
T ss_dssp SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999877655432111 111 111 1223344455555555443 44556666777777777662
Q ss_pred hcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 397 KYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 397 ~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
.+.+..+ ...+.++.+... . .....+.+.|.++||.+..+. ..+.+|++++ .+|++++++++++|++
T Consensus 365 -~~g~~~~~~~~~~~v~~~~~--~-------~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 365 -IPDLDIMGNPRYSVISFSSK--T-------LNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp -CTTCEECSCCCSSEEEEECT--T-------TTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred -CCCEEEecCCCeeEEEEeCC--C-------CCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 2222222 234445544421 1 125678899999999987654 2356899988 7899999999999999
Q ss_pred HHhh
Q 011669 476 SLSK 479 (480)
Q Consensus 476 ~l~~ 479 (480)
++++
T Consensus 433 ~l~~ 436 (497)
T 3mc6_A 433 TVQE 436 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 174
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=1.3e-22 Score=206.95 Aligned_cols=330 Identities=13% Similarity=0.081 Sum_probs=193.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhc-cccc--cc-cC----ChHHHHHH-HHHHHhCCCCCCEE-EEeCCHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHST--VL-YL----NHAIADFA-EALASKMPGNLKVV-FFTNSGTEA 170 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~-~~~~--~~-~~----~~~~~~l~-e~L~~~~~~~~~~v-~f~~sGseA 170 (480)
.+++.++.. +.||+|++|+.+++.+. .+.. .. +. .+...+++ +.+++.++. +.+ ++++||++|
T Consensus 34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~a 106 (425)
T 3ecd_A 34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQA 106 (425)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHHH
Confidence 466655432 45899999999988532 1111 11 11 12445555 667777754 334 469999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccc-cccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669 171 NELAIMMARLYTGCNDIISLRNAYHGN-AAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (480)
Q Consensus 171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (480)
++.+++.+. .+++.|++.+++|++. ..+... ..+. ++..++++... ..+..| .++++++++
T Consensus 107 ~~~al~~~~--~~gd~Vi~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~ 169 (425)
T 3ecd_A 107 NGAVMLALA--KPGDTVLGMSLDAGGHLTHGAKPALSGK----------WFNALQYGVSR-DTMLID----YDQVEALAQ 169 (425)
T ss_dssp HHHHHHHHC--CTTCEEEEECC----------------------------CEEEEECCCT-TTSSCC----HHHHHHHHH
T ss_pred HHHHHHHcc--CCCCEEEEcccccccceecchhhhhccc----------ceeeeecCCCc-ccCccC----HHHHHHHHh
Confidence 999999773 4778999999999872 222211 1110 12222222110 112234 678888886
Q ss_pred ccCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCccee--eecc
Q 011669 249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAK 324 (480)
Q Consensus 249 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDiv--t~sK 324 (480)
.. ++++|+++ |++| ....+++|+++|++||+++|+||+| .|+.+.| ..+... . .+|++ ++||
T Consensus 170 ~~---~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~~--~-~~di~~~s~sK 235 (425)
T 3ecd_A 170 QH---KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANPV--E-HAHVVTSTTHK 235 (425)
T ss_dssp HH---CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGG--G-TCSEEEEESSG
T ss_pred hc---CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCch--h-cCcEEEecCCc
Confidence 32 46778887 4442 3345899999999999999999995 5555555 222211 1 15665 5679
Q ss_pred ccccCccccccccC-HHHHHhhcCCCccccC-CCcHHHHHHHHHHHH-Hhhh--hHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669 325 GIGNGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLK-VIQK--DKLQNNAHVVGSYLKERLTALKDKYG 399 (480)
Q Consensus 325 ~~g~G~pig~v~~~-~~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~-~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (480)
++ +|+++||++++ +++.+.+......+.. +.++..++++.+++. .+.+ +++.++.+++.+++++.|.+. .+.
T Consensus 236 ~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 312 (425)
T 3ecd_A 236 TL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GVD 312 (425)
T ss_dssp GG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred cc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence 99 55688999998 5676666543222222 333434444444443 3323 356777888888888887763 111
Q ss_pred ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccC----cCCCEEEEeCCCCCC----HHHHH
Q 011669 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGG----FYGNVFRITPPLCFT----KEDAD 467 (480)
Q Consensus 400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~~iRi~p~~~~t----~~~id 467 (480)
.+. ..+.+.++++.+.... .....+.+.|.++||++. ++. ...+.+||+++...+ +++++
T Consensus 313 ~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~ 384 (425)
T 3ecd_A 313 LVT-GGTDNHLLLVDLRPKG-------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFR 384 (425)
T ss_dssp EGG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHH
T ss_pred ecc-CCCCceEEEEEeCCCC-------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHH
Confidence 111 1135667777764321 114567788889999998 431 113579999665544 99999
Q ss_pred HHHHHHHHHHhh
Q 011669 468 YLVDVMDYSLSK 479 (480)
Q Consensus 468 ~~l~~l~~~l~~ 479 (480)
+++++|++++++
T Consensus 385 ~~~~~l~~~l~~ 396 (425)
T 3ecd_A 385 EVGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 175
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=1e-23 Score=210.47 Aligned_cols=316 Identities=14% Similarity=0.038 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yh 195 (480)
.||+|.+|+.+.+.. ...+..+...+++++|+++++. +..+|++||++|++.+++.+... ++..+|+..+.+|
T Consensus 27 ~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~vvi~~~~~~ 99 (359)
T 3pj0_A 27 VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENRRVAYHPLSH 99 (359)
T ss_dssp HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCCEEEECTTCH
T ss_pred CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCcEEEEeccce
Confidence 367888887763322 2234567889999999999854 44567799999999999987653 3334666666665
Q ss_pred cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCC
Q 011669 196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG 275 (480)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~ 275 (480)
........... ..|...+.+|.. .+..| .++++++ .+++++|++++++|++|...++.+
T Consensus 100 ~~~~~~~~~~~---------~~g~~~~~v~~~---~~~~d----~~~l~~~-----~~~~~~v~~~~p~n~~~G~~~~~~ 158 (359)
T 3pj0_A 100 LEIHEQDGLKE---------LQQITPLLLGTA---NQLLT----IDDIKSL-----REPVSSVLIELPQREIGGQLPAFE 158 (359)
T ss_dssp HHHSSTTHHHH---------HHCCEEEECSCT---TSCCC----HHHHHTC-----SSCCSEEEEESSBGGGTSBCCCHH
T ss_pred eeehhcchHHH---------hcCceEEecCCc---CCCcC----HHHHHhc-----cCCceEEEEEecccCCCcccCCHH
Confidence 43322111100 012333333321 12223 4566554 246888999887766533446888
Q ss_pred hHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcCC--C
Q 011669 276 YLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRR--N 349 (480)
Q Consensus 276 ~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~--~ 349 (480)
++++|.++|++||+++|+||+|..+. ..|... .......|++ ++||+++++.. |++++++++++.+... .
T Consensus 159 ~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~ 234 (359)
T 3pj0_A 159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSA---EEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRR 234 (359)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH---HHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH---HHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999986332 112111 0111223555 78999986544 7888999998877642 1
Q ss_pred cc-ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee--EeccceeEEEEEecCCCcCCCCH
Q 011669 350 YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGRGFLLGVEFVTDRQLKTPAK 426 (480)
Q Consensus 350 ~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~~~~~~~~~~~~ 426 (480)
.. .++..++.+ +++.++++.. .+..++..+..+++.+.|+++ +.+.. ....+.++++.+.. +..
T Consensus 235 ~~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~------~~~ 301 (359)
T 3pj0_A 235 YGGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN------SAD 301 (359)
T ss_dssp TTCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS------CHH
T ss_pred hCCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC------ccc
Confidence 12 333344444 4444566533 233444566666666666553 33322 23456677777632 112
Q ss_pred HHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCC---CCCHHHHHHHHHHHHHH
Q 011669 427 AETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPL---CFTKEDADYLVDVMDYS 476 (480)
Q Consensus 427 ~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~---~~t~~~id~~l~~l~~~ 476 (480)
.....+.+.|.++||++.++..+ .+++|++... ..+.+++++++++|.++
T Consensus 302 ~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 302 EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 23567888999999999987432 2578987542 36899999999999875
No 176
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.90 E-value=3e-22 Score=202.58 Aligned_cols=310 Identities=13% Similarity=0.020 Sum_probs=199.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669 113 CGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192 (480)
Q Consensus 113 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~ 192 (480)
+.+.+++..+++.+. ....+....+.++...+++++|+++++.+ .+++++||++|++.+++.+. .++++|++.++
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~--~~gd~vl~~~~ 106 (389)
T 3acz_A 32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL--QKGDHLIAGDT 106 (389)
T ss_dssp BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC--CTTCEEEEESS
T ss_pred eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 345565544433222 12234455677899999999999998653 67888999999999998653 36789999999
Q ss_pred CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669 193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272 (480)
Q Consensus 193 ~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 272 (480)
.||+.......... ..|+....++. .| .+++++.++ +++++|++|+++|++|.+.+
T Consensus 107 ~y~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 162 (389)
T 3acz_A 107 LYGCTVSLFTHWLP---------RFGIEVDLIDT-------SD----VEKVKAAWK----PNTKMVYLESPANPTCKVSD 162 (389)
T ss_dssp CCHHHHHHHHHHHH---------HTTCEEEEECT-------TC----HHHHHHTCC----TTEEEEEEESSCTTTCCCCC
T ss_pred CchHHHHHHHHHHH---------HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeecC
Confidence 99985443211000 01333322221 12 567777764 37899999999999998876
Q ss_pred CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCH-HHHHhhcC
Q 011669 273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLTR 347 (480)
Q Consensus 273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~-~~~~~l~~ 347 (480)
+++|.++|++||+++|+||+|+++. .+ .. + +..+|++ +++|.+++ |.|+ |++++++ ++++.+..
T Consensus 163 ----l~~i~~~~~~~~~~livD~~~~~~~-~~-~~--~---~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~ 231 (389)
T 3acz_A 163 ----IKGIAVVCHERGARLVVDATFTSPC-FL-KP--L---ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF 231 (389)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTTTCTT-TC-CG--G---GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECCCcccc-cc-Cc--c---ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH
Confidence 9999999999999999999998542 22 11 1 2357777 78899995 6898 9999998 88877764
Q ss_pred CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH----------HhcCcee----eEeccceeEEE
Q 011669 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIG----DVRGRGFLLGV 413 (480)
Q Consensus 348 ~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~----~v~g~g~~~~i 413 (480)
.........+|+.+.++++.|+.+. ...++..+....+.+.|++.. ..++.+. ..++.|.++.+
T Consensus 232 ~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~ 309 (389)
T 3acz_A 232 YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF 309 (389)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE
Confidence 3322233457888887777776432 223344444455555554431 0011000 11456788888
Q ss_pred EEecCCCcCCCCHHHHHHHHHHHHHcCceeecc--C--------------------------cCCCEEEEeCCCCCCHHH
Q 011669 414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG--G--------------------------FYGNVFRITPPLCFTKED 465 (480)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~ 465 (480)
++.. ...+.+.+.+.|+++... | ...+.+||+++.. +
T Consensus 310 ~l~~-----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~ 374 (389)
T 3acz_A 310 EMKS-----------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----N 374 (389)
T ss_dssp EESS-----------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----C
T ss_pred EECC-----------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----C
Confidence 8731 234556666778877652 1 1147899997765 5
Q ss_pred HHHHHHHHHHHHhh
Q 011669 466 ADYLVDVMDYSLSK 479 (480)
Q Consensus 466 id~~l~~l~~~l~~ 479 (480)
+++.++.|.+++++
T Consensus 375 ~~~li~~l~~al~~ 388 (389)
T 3acz_A 375 VDDIIADLKQALEL 388 (389)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 56666666666654
No 177
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=1.4e-23 Score=209.49 Aligned_cols=335 Identities=13% Similarity=0.041 Sum_probs=201.6
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccC-ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~-~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al 175 (480)
|+|+|.++...-..+| .||.+.+++.++++... .....|. ++...+|+++|+++++. +..++++||++|++.++
T Consensus 3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence 4456533333333344 36788888888777632 1112333 46788999999999864 45567799999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+.+... +++++|+..+.+|........... ..|+..++++.. .+..| .++++++ . ++
T Consensus 80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~---~~~~d----~~~l~~~-----~-~~ 136 (357)
T 3lws_A 80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLKE---------LHPIETILVGAA---DRLMT----LDEIKAL-----P-DI 136 (357)
T ss_dssp HHHHHH-HTCCEEEECTTCHHHHSSTTHHHH---------HSSCEEEECSCT---TSCCC----HHHHHTC-----C-SC
T ss_pred HHHhhc-CCCcEEEecccceeeeeccchhhh---------ccCcEEEEecCC---CCCcC----HHHHhcC-----c-Cc
Confidence 987653 222266666666654332110000 013334443321 11123 4555544 2 37
Q ss_pred EEEEEcccCCCC-cceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCCcc--eeeeccccccCc
Q 011669 256 AGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVPD--IVTMAKGIGNGI 330 (480)
Q Consensus 256 a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~pD--ivt~sK~~g~G~ 330 (480)
++|++++++|++ |. .++.+++++|.++|++||+++|+||+|.. .+..|.....+. ...| +.++||++++..
T Consensus 137 ~~v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~ 212 (357)
T 3lws_A 137 ACLLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIA 212 (357)
T ss_dssp SEEEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSS
T ss_pred ceEEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCc
Confidence 788888877775 65 46888999999999999999999999751 111121111111 1133 448999996432
Q ss_pred cccccccCHHHHHhhcCCC--cc-ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee--Ee
Q 011669 331 PLGAVVTTPEIAEVLTRRN--YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VR 405 (480)
Q Consensus 331 pig~v~~~~~~~~~l~~~~--~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~ 405 (480)
. |++++++++++.+.... .. ..+..++. ++++.++|+... +..++..+..+++.+.|+++ +.+.. ..
T Consensus 213 g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~ 284 (357)
T 3lws_A 213 G-AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK--DRMGQYYEQAKQLAEQFNAL----PGVHTTPEV 284 (357)
T ss_dssp C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTS----TTEEEESSS
T ss_pred e-EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC----CCCeeccCC
Confidence 2 89999999888775321 22 22333343 444556665421 22333455556666666543 33332 24
Q ss_pred ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---CCEEEEeCC---CCCCHHHHHHHHHHHHHHH
Q 011669 406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---GNVFRITPP---LCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~---~~~t~~~id~~l~~l~~~l 477 (480)
..+.++++++... .......+.+.|.++||++.++..+ ..++|++.. +..+++++++++++|.+++
T Consensus 285 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 285 PVSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp CSSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CcceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 5677888887431 1122466788899999999887322 247899765 3368999999999998875
No 178
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.90 E-value=1.7e-22 Score=205.38 Aligned_cols=289 Identities=15% Similarity=0.058 Sum_probs=191.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT 217 (480)
Q Consensus 138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~ 217 (480)
..++...+++++++++++. +++++++||++|+..+++... .+++.|++.++.|++......... ...
T Consensus 59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~---------~~~ 125 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHAL---------TKF 125 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHH---------HHT
T ss_pred CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHH---------HHc
Confidence 4467788999999999865 478899999999999998653 367889999999987544211000 001
Q ss_pred CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hCCEEEEccc
Q 011669 218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEV 296 (480)
Q Consensus 218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv 296 (480)
|+....+|.. | .+++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+
T Consensus 126 g~~~~~v~~~-------d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~ 186 (404)
T 1e5e_A 126 GIQVDFINTA-------I----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNT 186 (404)
T ss_dssp TCEEEEECTT-------S----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECT
T ss_pred CCEEEEECCC-------C----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECC
Confidence 3333333221 2 357777774 36899999999999998875 9999999999 9999999999
Q ss_pred ccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCccc-cCCCcHHHHHHHHHHHHHhh
Q 011669 297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFN-TFGGNPVCTAAGHAVLKVIQ 372 (480)
Q Consensus 297 ~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~~~-t~~~~~~~~aaa~a~L~~i~ 372 (480)
|+.+... .. .+ ++....+.++||.+++ |+|+ ||+++++++++ .+....... +.+.+++.+.++.++|+.+
T Consensus 187 ~~~~~~~--~~--~~-~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~- 260 (404)
T 1e5e_A 187 FCSPMIT--NP--VD-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL- 260 (404)
T ss_dssp TTCTTTC--CG--GG-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH-
T ss_pred CchhhhC--Cc--cc-cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH-
Confidence 9876432 11 12 3433334478999994 8998 99999999887 776654433 4567899988888888643
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhH----HhcCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH
Q 011669 373 KDKLQNNAHVVGSYLKERLTALK----DKYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE 438 (480)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~L~~l~----~~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (480)
+...++..+..+.+.+.+++.. ..++.+. ..++.|.|+.+++.. . ...+.+.+.+
T Consensus 261 -~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~~l~~ 329 (404)
T 1e5e_A 261 -NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKKLLDN 329 (404)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHHHHHh
Confidence 2233333444444444444321 0011110 123458888887621 1 2335556677
Q ss_pred cCceeecc--C--------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 439 MGVLVGKG--G--------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 439 ~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.||++... | ...+++||+++. ++++++++.|+++++.
T Consensus 330 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 330 LKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA 394 (404)
T ss_dssp CSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence 88854331 1 114789999775 7889999999888754
No 179
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.90 E-value=2e-22 Score=202.09 Aligned_cols=309 Identities=16% Similarity=0.098 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh-hcCCceEEEEcCC
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL-YTGCNDIISLRNA 193 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~-~~~~~~ii~~~~~ 193 (480)
..+|+|.+|+.+++.... .++.+...+++++|+++++. +++++++||++|++.+++.++. ..++++|++.+++
T Consensus 10 ~~~~~v~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~ 83 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQ----LTQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS 83 (375)
T ss_dssp CCCHHHHHHHHHHHTSSC----CSSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred CCCHHHHHHHHHHHHcCc----ccCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence 467999999999887532 12357788999999999964 4899999999999999997731 2356799999999
Q ss_pred cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (480)
Q Consensus 194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~ 273 (480)
||+........ |+..+.++....+. .| .+++++.++ +++++|++.+. +|.+.+
T Consensus 84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~~--~d----~~~l~~~i~----~~~~~v~~~~~---tG~~~~- 136 (375)
T 2fnu_A 84 FVATANMLLES-------------GYTPVFAGIKNDGN--ID----ELALEKLIN----ERTKAIVSVDY---AGKSVE- 136 (375)
T ss_dssp CTHHHHHHHHT-------------TCEEEECCBCTTSS--BC----GGGSGGGCC----TTEEEEEEECG---GGCCCC-
T ss_pred cHhHHHHHHHC-------------CCEEEEeccCCCCC--CC----HHHHHhhcC----cCceEEEEeCC---cCCccC-
Confidence 99876654332 22222222111111 12 345655553 25676555444 677665
Q ss_pred CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC--cceeeec--cccccCcccccccc-C-HHHHHhhcC
Q 011669 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMA--KGIGNGIPLGAVVT-T-PEIAEVLTR 347 (480)
Q Consensus 274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~--pDivt~s--K~~g~G~pig~v~~-~-~~~~~~l~~ 347 (480)
+++|.++|++||+++|+||+|+. |... .....+.. .++.++| |.++.| +|++++ + +++++.+..
T Consensus 137 ---l~~i~~l~~~~~~~li~D~a~~~-~~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~ 206 (375)
T 2fnu_A 137 ---VESVQKLCKKHSLSFLSDSSHAL-GSEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL 206 (375)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTCT-TCEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECcccc-CCeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence 89999999999999999999973 3221 11112222 3445788 999664 788877 3 677665543
Q ss_pred CC----------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------e
Q 011669 348 RN----------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------R 405 (480)
Q Consensus 348 ~~----------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------~ 405 (480)
.. .+.+++.+++.+++++..++.+ ++..++.+++.+++.+.|+++ +.+... +
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~ 280 (375)
T 2fnu_A 207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDK 280 (375)
T ss_dssp HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSC
T ss_pred HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCC
Confidence 21 1122356677766666554432 345666777777777776653 222111 1
Q ss_pred ccceeEEEEEecCCCcCCCCHH-HHHHHHHHHHHcCceeecc----C---cC----------------CCEEEEeCCCCC
Q 011669 406 GRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMKEMGVLVGKG----G---FY----------------GNVFRITPPLCF 461 (480)
Q Consensus 406 g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~----~---~~----------------~~~iRi~p~~~~ 461 (480)
+.+.++++.+... .. ....+.+.|.++||.+... . .+ .+.+||+++..+
T Consensus 281 ~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~ 353 (375)
T 2fnu_A 281 SSNHLYPILMHQK-------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL 353 (375)
T ss_dssp CCCSCEEEEECGG-------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred cceEEEEEEeCcc-------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence 2234556666321 01 2467888899999998721 0 01 167999999889
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011669 462 TKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 462 t~~~id~~l~~l~~~l~~ 479 (480)
|++|+++++++|++++++
T Consensus 354 t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 354 NLESVQNIAHSVLKTFES 371 (375)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 180
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.90 E-value=7.2e-23 Score=205.35 Aligned_cols=312 Identities=14% Similarity=0.092 Sum_probs=201.4
Q ss_pred cCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (480)
Q Consensus 112 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~ 191 (480)
++|+++|.+.+++.+++.+.......+..+...+++++|+++++. +.+++++||++|++.|++.++ ..++++|++..
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~ 82 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG 82 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence 345666555444444443321111234578889999999999964 479999999999999999774 23678999999
Q ss_pred CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (480)
Q Consensus 192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 271 (480)
++|++........ |...+.++... ..+..| .++++++++ +++++|+.++ ++|...
T Consensus 83 ~~~~~~~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~ 137 (367)
T 3nyt_A 83 FTYVATAETVALL-------------GAKPVYVDIDP-RTYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA 137 (367)
T ss_dssp SSCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred CccHHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence 9998866554333 22222221110 012223 455666653 3788888443 455444
Q ss_pred CCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HHHHHh
Q 011669 272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV 344 (480)
Q Consensus 272 ~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~~~~~ 344 (480)
+ +++|.++|++||+++|+||+|+ |..+.| . ..+...|++++| |.+++ |. .|+++.+ +++++.
T Consensus 138 ~----~~~i~~la~~~~~~li~D~a~~~g~~~~~-~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~ 206 (367)
T 3nyt_A 138 D----FDAINAIASKYGIPVIEDAAQSFGASYKG-K-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA 206 (367)
T ss_dssp C----HHHHHHHHHHTTCCBEEECTTTTTCEETT-E-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred h----HHHHHHHHHHcCCEEEEECccccCCeECC-e-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence 3 9999999999999999999997 232223 1 122233888776 99997 76 7888874 677766
Q ss_pred hcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeE
Q 011669 345 LTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLL 411 (480)
Q Consensus 345 l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~ 411 (480)
+.... .+.++..+++.++++++.++.+ +++.++.+++.+++++.|.++.-..+.... .......+
T Consensus 207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 284 (367)
T 3nyt_A 207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY 284 (367)
T ss_dssp HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence 54321 1346778899999998888754 456677788888888888776211111100 11111122
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------C--------------CCEEEEeCCCCCCHHHHHHH
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------Y--------------GNVFRITPPLCFTKEDADYL 469 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--------------~~~iRi~p~~~~t~~~id~~ 469 (480)
.+.+. ....+.+.|.++||.+.+... + ...+|+......|++|++.+
T Consensus 285 ~~~~~-----------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v 353 (367)
T 3nyt_A 285 TVRMD-----------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKII 353 (367)
T ss_dssp EEECS-----------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred EEEeC-----------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence 33221 146788899999998875421 1 24789988888999999999
Q ss_pred HHHHHH
Q 011669 470 VDVMDY 475 (480)
Q Consensus 470 l~~l~~ 475 (480)
++.|++
T Consensus 354 ~~~~~~ 359 (367)
T 3nyt_A 354 CAALTN 359 (367)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 999875
No 181
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.90 E-value=8.7e-23 Score=208.04 Aligned_cols=295 Identities=17% Similarity=0.119 Sum_probs=194.5
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
|....|.++...+|+++|+++.+ .+.+++++||++|++.+++.+. .+++.||+.+++||+.........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~------- 141 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEIL------- 141 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHH-------
T ss_pred cCcCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHH-------
Confidence 44567788999999999999985 3678999999999999998663 367899999999998543332110
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
...|+....+|. +| .++++++++ +++++|++|+++|++|.+.+ +++|+++|++||+++|
T Consensus 142 --~~~g~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li 200 (414)
T 3ndn_A 142 --PRWGVQTVFVDG-------DD----LSQWERALS----VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV 200 (414)
T ss_dssp --HHTTCEEEEECT-------TC----HHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred --HHcCcEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence 001333333322 13 577888775 36889999999999998865 9999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeecccccc-C-ccccccccCHHHHH-hhcCCCccccCCCcHHHHHHHHHHHH
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-G-IPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLK 369 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G-~pig~v~~~~~~~~-~l~~~~~~~t~~~~~~~~aaa~a~L~ 369 (480)
+||+|+ .+... ....++..+.+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++
T Consensus 201 vDe~~~-~~~~~----~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~ 275 (414)
T 3ndn_A 201 LDNVFA-TPLLQ----QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE 275 (414)
T ss_dssp EECTTT-HHHHC----CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred EECCCc-ccccC----CchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999997 22111 11234555556678999996 7 89999999988765 44421111122236776666665554
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAETLY 431 (480)
Q Consensus 370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~ 431 (480)
.+ +...++..+..+++.+.|++ ++.+.. .+|.|.++++++..... ........
T Consensus 276 ~l--~~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~ 346 (414)
T 3ndn_A 276 TL--AIRVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE 346 (414)
T ss_dssp GH--HHHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence 33 22334445555555555544 333322 35678999999842100 00234566
Q ss_pred HHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 432 IMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 432 ~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
+.+.|...++.+..|+ ...+.|||+..+ |+++.+++.|+++|
T Consensus 347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 7777776666555443 234689998554 56677777777766
No 182
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.90 E-value=1.4e-21 Score=204.21 Aligned_cols=350 Identities=11% Similarity=0.035 Sum_probs=209.4
Q ss_pred eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChH----HHHHHHHHHHhCCCCC-CEEEEeCCHHH
Q 011669 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA----IADFAEALASKMPGNL-KVVFFTNSGTE 169 (480)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~----~~~l~e~L~~~~~~~~-~~v~f~~sGse 169 (480)
...+.+|+|+..+ ++.+|.+++++...+... ........+. ..+++++|+++++.+. +.++|++||||
T Consensus 97 ~~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 97 FTQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp CTTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 3456788988765 456789988886654332 1111112233 3445677999986543 68999999999
Q ss_pred HHHHHHHHHHhh------------cC-----Cc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCC
Q 011669 170 ANELAIMMARLY------------TG-----CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231 (480)
Q Consensus 170 A~~~Alk~ar~~------------~~-----~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 231 (480)
||..|++.+|.+ .| ++ .|++....+ .....+....+.+. ..+..++... .
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h-~s~~~~~~~~g~g~-------~~v~~v~~~~----~ 237 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSH-FTVQKSASWMGLGE-------KAVMTVDANA----D 237 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSC-THHHHHHHHTTSCG-------GGEEEECBCT----T
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCch-HHHHHHHHHcCCCc-------ccEEEEecCC----C
Confidence 999999998642 11 23 455554444 33333322222100 0123333321 1
Q ss_pred CCCChHHHHHHHHHHHHccC-C-CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669 232 FGADGEMYAKDVQDLIDFGT-S-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (480)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~-~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~ 309 (480)
+..| .++|++.++... . ..+.+|++...++++|.+.+ +++|.++|++||+++|+||+|.++.... . +.
T Consensus 238 ~~~d----~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~ 307 (497)
T 2qma_A 238 GTMD----ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HK 307 (497)
T ss_dssp SSBC----GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TG
T ss_pred CcCC----HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-ch
Confidence 2123 456777765321 1 12457777777778888766 9999999999999999999999876655 3 33
Q ss_pred ccccCC-Ccceeee--ccccccCccccccccCHH-HHHhhcCCC-cc---ccCCCcHHHH----------HHHHHHHHHh
Q 011669 310 FEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IAEVLTRRN-YF---NTFGGNPVCT----------AAGHAVLKVI 371 (480)
Q Consensus 310 ~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~-~~~~l~~~~-~~---~t~~~~~~~~----------aaa~a~L~~i 371 (480)
....++ .+|++++ +|.+++++++|+++++++ .++.+.... +. .+...++... .+..++++.+
T Consensus 308 ~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l 387 (497)
T 2qma_A 308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV 387 (497)
T ss_dssp GGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT
T ss_pred HhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh
Confidence 334455 6788876 799998889999998754 344443211 10 1101122211 1233455555
Q ss_pred hhh---HHHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669 372 QKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447 (480)
Q Consensus 372 ~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 447 (480)
..+ ++.++..++.+++.+.|+++ +.+.. ....+.++++.+..... ........+.+.|.++|+++.++.
T Consensus 388 g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~G~~~~~~~ 460 (497)
T 2qma_A 388 GPKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALTRGIAVLGET 460 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhCCCEEEEee
Confidence 433 45566667777777777653 22211 12345577777643211 111223467788889999886532
Q ss_pred cC--CCEEEEeC-CCCCCHHHHHHHHHHHHHHHhhC
Q 011669 448 FY--GNVFRITP-PLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 448 ~~--~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
.. .+++||++ +..+|++|+++++++|+++++++
T Consensus 461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 22 35899997 78899999999999999988754
No 183
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.90 E-value=5.3e-23 Score=208.86 Aligned_cols=336 Identities=14% Similarity=0.121 Sum_probs=200.3
Q ss_pred EEEeccCCcccccCC--CCCHHHHHHHHHHH-Hhcccccccc-CChHHHHHHHHHHHhC----CC--CCC--EEEEeCCH
Q 011669 100 RYLDAFGGIATVCCG--HCHPYVVDSIVNQI-KRIQHSTVLY-LNHAIADFAEALASKM----PG--NLK--VVFFTNSG 167 (480)
Q Consensus 100 ~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~-~~~~~~~~~~-~~~~~~~l~e~L~~~~----~~--~~~--~v~f~~sG 167 (480)
..|||..|.....=| ...+.|.+|+. .+ +.. ....| +.....+|++.+++++ .. ..+ +++.|+||
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~ 106 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG 106 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence 357877775321112 24578888876 33 221 11122 2344455555555543 11 123 46899999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (480)
Q Consensus 168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (480)
++|+..++++.....+ +.|++.+|+|.++....... |...+.+|......|+-| .+++++.+
T Consensus 107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l 168 (405)
T 3k7y_A 107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-------------GFNLKYINFFDYNLIDIN----YDLFLNDL 168 (405)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-------------TCEEEEECCEETTTTEEC----HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-------------CCeEEEEeccccccCCcC----HHHHHHHH
Confidence 9999999987665446 99999999998876554433 333333332111123334 57788777
Q ss_pred HccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--ccccc----ccCCCccee
Q 011669 248 DFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE----AHGVVPDIV 320 (480)
Q Consensus 248 ~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~~----~~~~~pDiv 320 (480)
+.. .+.+++++.| .||++|.+ ++++.+++|.++|++||+++|+||+|.+|...+.. ..... ..+...-+.
T Consensus 169 ~~~--~~~~~i~l~~~~~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (405)
T 3k7y_A 169 RNI--PNGSSVILQISCYNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQ 245 (405)
T ss_dssp HHS--CSSCEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEE
T ss_pred HhC--CCCeEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEe
Confidence 642 2456777776 47889877 58899999999999999999999999998654311 11111 111122234
Q ss_pred eeccccc-cCcccccccc---CHHHHHhhcCC---CccccC-CCcHHHHHHHHHHHHHhh-hhHHHHH-------HHHHH
Q 011669 321 TMAKGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTF-GGNPVCTAAGHAVLKVIQ-KDKLQNN-------AHVVG 384 (480)
Q Consensus 321 t~sK~~g-~G~pig~v~~---~~~~~~~l~~~---~~~~t~-~~~~~~~aaa~a~L~~i~-~~~~~~~-------~~~~~ 384 (480)
+|||.++ .|+|+||+++ ++++++.+... ....++ +.+.+++.++.++|+.-. .+.+.++ +++.+
T Consensus 246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R 325 (405)
T 3k7y_A 246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR 325 (405)
T ss_dssp ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999 8999999753 56666544321 111233 445677777777775310 1223333 33344
Q ss_pred HHHHHHHHHhHHhcCc---eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669 385 SYLKERLTALKDKYGI---IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC 460 (480)
Q Consensus 385 ~~l~~~L~~l~~~~~~---~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~ 460 (480)
+.+.+.|++-.++++. +... ...|+++|+.+.. .+++.|.++||++.|++ ||+.. .
T Consensus 326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~gV~v~p~~------Ris~a-~ 385 (405)
T 3k7y_A 326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHHIYIINNG------RINVS-G 385 (405)
T ss_dssp HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTTEECCTTS------EEEGG-G
T ss_pred HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCCEeecCCC------eEEEe-c
Confidence 4444444300003332 2222 3345666654311 23345578899999864 88843 3
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 011669 461 FTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l~~ 479 (480)
.++++|++++++|++++++
T Consensus 386 ~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 386 ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp CCTTHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 5789999999999999876
No 184
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=9.4e-22 Score=201.14 Aligned_cols=317 Identities=14% Similarity=0.085 Sum_probs=200.2
Q ss_pred eccCCcccccCCCCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh
Q 011669 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180 (480)
Q Consensus 103 D~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~ 180 (480)
||..|.+. ++ .+|++.+++.+.+.... |. .+...+++++|+++++. +++++++||++|++.+++.+.
T Consensus 20 ~l~~~~p~--~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRPN--RI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCCC--CC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCCC--CC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-
Confidence 45555544 33 36799999988886532 33 47889999999999954 689999999999999999764
Q ss_pred hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (480)
Q Consensus 181 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ 260 (480)
.+++|++.+++|++........ |...+.++... ..|..| .+++++.++ +++++|++
T Consensus 89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~ 144 (424)
T 2po3_A 89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT----PRTSAVVG 144 (424)
T ss_dssp --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC----TTEEEEEE
T ss_pred --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC----cCCcEEEE
Confidence 3589999999999876543221 22222222110 112223 566666654 36777776
Q ss_pred cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--ec--cccccCcccccc
Q 011669 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MA--KGIGNGIPLGAV 335 (480)
Q Consensus 261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~s--K~~g~G~pig~v 335 (480)
.+ ++|... .+++|.++|++||+++|+||+|+ |+.+.| .. .+..+|+++ |+ |++++ +++||+
T Consensus 145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~ 210 (424)
T 2po3_A 145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV 210 (424)
T ss_dssp EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence 43 456543 49999999999999999999998 676555 21 122246664 44 77766 799999
Q ss_pred ccC-HHHHHhhcCCCc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669 336 VTT-PEIAEVLTRRNY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (480)
Q Consensus 336 ~~~-~~~~~~l~~~~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 402 (480)
+++ +++++.+..... +.++..+++.+++++..++.+ +.+.++.+++.+++++.|.++ +.+.
T Consensus 211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~ 284 (424)
T 2po3_A 211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----PGVL 284 (424)
T ss_dssp EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----TTEE
T ss_pred EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcc
Confidence 999 788776543111 112233566666666555433 234555555555555555432 2222
Q ss_pred eEe-ccc-----eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-C----------------------CCEE
Q 011669 403 DVR-GRG-----FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-Y----------------------GNVF 453 (480)
Q Consensus 403 ~v~-g~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~----------------------~~~i 453 (480)
... ..| .++.+.+.... . ......+.+.|.++||.+.+... . ...+
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~-~----~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l 359 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEAT-T----GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL 359 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHH-H----SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred ccCCCCCCccccEEEEEEECCcc-c----hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence 221 111 34445552100 0 00145678888999999976211 0 0127
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|+.+...+|++|+++++++|++++++
T Consensus 360 ~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 360 SLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 77766889999999999999988753
No 185
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.89 E-value=5.5e-23 Score=206.94 Aligned_cols=327 Identities=13% Similarity=0.057 Sum_probs=199.1
Q ss_pred CC-EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHH
Q 011669 98 GR-RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAI 175 (480)
Q Consensus 98 G~-~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Al 175 (480)
|. .++|+..+.+.. ..+|+|.+++. .. . .+.....++++.+++.++. +.+++++++||++|++.++
T Consensus 26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~--~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~ 93 (374)
T 2aeu_A 26 GRDALYDLSGLSGGF---LIDEKDKALLN----TY--I---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI 93 (374)
T ss_dssp CGGGCEECSSCCCCC---CCCHHHHHHHT----ST--T---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred CccceeeecccCCCC---CCCHHHHHHHH----Hh--c---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence 44 466877654433 35688888875 11 1 1123345677777777754 2368899999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (480)
Q Consensus 176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (480)
+.+ ++++|++.+++||+......... ..|+..+.+. | .+++++. + +++
T Consensus 94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v~---------d----~~~l~~~-~----~~~ 141 (374)
T 2aeu_A 94 LAL----KPKKVIHYLPELPGHPSIERSCK----------IVNAKYFESD---------K----VGEILNK-I----DKD 141 (374)
T ss_dssp HHH----CCSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEES---------C----HHHHHTT-C----CTT
T ss_pred HhC----CCCEEEEecCCCCccHHHHHHHH----------HcCcEEEEeC---------C----HHHHHhc-C----CCc
Confidence 965 67899999999998443111110 0133222221 2 4566655 2 367
Q ss_pred EE-EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccc
Q 011669 256 AG-FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPL 332 (480)
Q Consensus 256 a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pi 332 (480)
++ |++++++|++|. +...+++|.++|++||+++|+||+|..+. .+ ........+..+|++ +++|.++ |+++
T Consensus 142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~~~~~~~~~~di~~~S~sK~l~-g~~~ 215 (374)
T 2aeu_A 142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL-LFNQPPALKLGADLVVTSTDKLME-GPRG 215 (374)
T ss_dssp EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH-HTTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc-ccccCCccccCCcEEEecCccccc-Ccce
Confidence 88 999988998883 33449999999999999999999986442 11 000000111235666 5899986 4799
Q ss_pred cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHhHHhc----CceeeE
Q 011669 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL----KERLTALKDKY----GIIGDV 404 (480)
Q Consensus 333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l----~~~L~~l~~~~----~~~~~v 404 (480)
||+++++++++.+.........+.+++.++++.++|+.+..+ ..++..+....+ ++.|.+..... ++....
T Consensus 216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~ 294 (374)
T 2aeu_A 216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294 (374)
T ss_dssp EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence 999999999887765332223356889999999999876332 233333334344 44554432221 112234
Q ss_pred eccceeEEEEEecCCCcCCCCHHHHHHHH-HHHHHcCceeeccCcC---CCEEEEeCCC-CCCHHHHHHHHHHHHHHHhh
Q 011669 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKEMGVLVGKGGFY---GNVFRITPPL-CFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~~---~~~iRi~p~~-~~t~~~id~~l~~l~~~l~~ 479 (480)
.+.|.+++..-... . ........++ +.+.++||++.++..+ .+++||+++. ..++.+++++++.|++++++
T Consensus 295 ~~~g~~~~~~~~~~--~--~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 295 TPTGFVIKRVYKDD--T--INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp CSSEEEEEEEESSH--H--HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeecccc--c--ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 56666654421110 0 0000112244 4556789999987432 3589999753 23344588999999888865
No 186
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.89 E-value=1e-22 Score=204.49 Aligned_cols=316 Identities=14% Similarity=0.091 Sum_probs=197.3
Q ss_pred ccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669 111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL 190 (480)
Q Consensus 111 ~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~ 190 (480)
.++||++|.+.+.+.+++.+.......+..+...+++++|+++++. ++++|++||++|++.+++.+. ..+++.|++.
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~ 82 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP 82 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence 4556666655554444443321111234578889999999999964 589999999999999998762 2367899999
Q ss_pred cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (480)
Q Consensus 191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 270 (480)
.++|++........ + ...+.++... ..+..| .+++++.++ +++++|++ ++++|..
T Consensus 83 ~~~~~~~~~~~~~~-g------------~~~~~~~~~~-~~~~~d----~~~l~~~l~----~~~~~v~~---~n~~G~~ 137 (373)
T 3frk_A 83 SNTFIATALAVSYT-G------------AKPIFVEPDI-RTYNID----PSLIESAIT----EKTKAIIA---VHLYGQP 137 (373)
T ss_dssp TTSCTHHHHHHHHH-S------------CEEEEECEET-TTTEEC----GGGTGGGCC----TTEEEEEE---ECCTTCC
T ss_pred CCCcHHHHHHHHHc-C------------CEEEEEeccc-cccCcC----HHHHHHhcC----CCCeEEEE---ECCCcCc
Confidence 99999865543322 2 1111111100 011112 355666553 36777773 3456765
Q ss_pred eCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HHHHHh
Q 011669 271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV 344 (480)
Q Consensus 271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~~~~~ 344 (480)
.+ +++|.++|++||+++|+||+|+. | ..+.....+..+|++++| |++++ |. .|+++++ +++.+.
T Consensus 138 ~~----l~~i~~l~~~~~~~li~D~a~~~-g----~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~ 207 (373)
T 3frk_A 138 AD----MDEIKRIAKKYNLKLIEDAAQAH-G----SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK 207 (373)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTCT-T----CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred cc----HHHHHHHHHHcCCEEEEECCccc-C----CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence 54 99999999999999999999973 2 112223445557888777 99987 64 6777776 456554
Q ss_pred hcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-ccceeE
Q 011669 345 LTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRGFLL 411 (480)
Q Consensus 345 l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~ 411 (480)
+.... .+.++..+++.++++++.++.+ +++.++.+++.+++++.|.++. ........ ....+.
T Consensus 208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence 43211 1234556788777776666533 4466667777777777665542 11111000 111111
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHH
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDA 466 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~i 466 (480)
.+.+... ....+.+.|.++||.++++.. ....+|++....+|++||
T Consensus 284 ~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di 354 (373)
T 3frk_A 284 TFVIRSE---------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEI 354 (373)
T ss_dssp SEEEEES---------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred EEEEEeC---------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence 1222111 146788999999999985421 015799999999999999
Q ss_pred HHHHHHHHHHH
Q 011669 467 DYLVDVMDYSL 477 (480)
Q Consensus 467 d~~l~~l~~~l 477 (480)
++++++|++..
T Consensus 355 ~~~~~~l~~~~ 365 (373)
T 3frk_A 355 EYVIDKINAWK 365 (373)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 187
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.89 E-value=7.7e-23 Score=206.76 Aligned_cols=308 Identities=18% Similarity=0.177 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197 (480)
Q Consensus 118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~ 197 (480)
+++.+++.+.+....+. +..+...+++++|+++++. +.++|++||++|++.+++.+. ..+++.|++..++|++.
T Consensus 36 ~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~ 109 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIAS 109 (391)
T ss_dssp SSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHH
T ss_pred HHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHH
Confidence 67888888877654221 2468889999999999964 478999999999999999773 23678999999999987
Q ss_pred cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669 198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL 277 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l 277 (480)
....... |...+.++... ..|..| .+++++.++ +++++|+++ +++|.+.+ +
T Consensus 110 ~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~----~ 160 (391)
T 3dr4_A 110 ANSVTYC-------------GATPVLVDNDP-RTFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD----M 160 (391)
T ss_dssp HHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----H
T ss_pred HHHHHHC-------------CCEEEEEecCc-cccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----H
Confidence 6554432 22222222110 112223 345655553 367777743 35676554 9
Q ss_pred HHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC--
Q 011669 278 PAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN-- 349 (480)
Q Consensus 278 ~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~-- 349 (480)
++|.++|++||+++|+||+|+. ....+ ...+..+|++++| |++++| +.|+++.+ +++.+.+....
T Consensus 161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~ 233 (391)
T 3dr4_A 161 DPILEVARRHNLLVIEDAAEAVGATYRG------KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQ 233 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCEEEEECcccccceECC------eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhc
Confidence 9999999999999999999972 21112 1233345777766 999774 57887766 45655543211
Q ss_pred ------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee-----EeccceeEE
Q 011669 350 ------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-----VRGRGFLLG 412 (480)
Q Consensus 350 ------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-----v~g~g~~~~ 412 (480)
.+..+..+++.+++++..++.+ +++.++.+++.+++++.|.++ .+..... ....+.+++
T Consensus 234 g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~ 309 (391)
T 3dr4_A 234 GMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYT 309 (391)
T ss_dssp TCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEE
T ss_pred CCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEE
Confidence 1123556677777766665533 456777888888888888776 3322221 122233456
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------------------CCCEEEEeCCCCCCHHHHHHHH
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------------------YGNVFRITPPLCFTKEDADYLV 470 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~~~id~~l 470 (480)
+.+.... ......+.+.|.++||.+.++.. ..+.+||.+...+|++||++++
T Consensus 310 i~~~~~~------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~ 383 (391)
T 3dr4_A 310 VRLGEGL------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVI 383 (391)
T ss_dssp EEECSSC------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred EEECCcc------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 6653210 11246788999999999987530 1357999999999999999999
Q ss_pred HHHHHHH
Q 011669 471 DVMDYSL 477 (480)
Q Consensus 471 ~~l~~~l 477 (480)
++|++++
T Consensus 384 ~~l~~~l 390 (391)
T 3dr4_A 384 AALDQVL 390 (391)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9998764
No 188
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.89 E-value=8.6e-22 Score=200.43 Aligned_cols=331 Identities=13% Similarity=0.096 Sum_probs=196.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccc-cccC-ChHH----HHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HST-VLYL-NHAI----ADFAEALASKMPGNLKVVFFTNSGTEAN 171 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~-~~~~-~~~~----~~l~e~L~~~~~~~~~~v~f~~sGseA~ 171 (480)
.+++.++.. +.||+|.+|+.+++.+.. +.. ..+. .... ..+++++++.++.+.++| +++||++|+
T Consensus 27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~ 100 (417)
T 3n0l_A 27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQAN 100 (417)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHH
T ss_pred CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHH
Confidence 455554432 458999999998884321 111 1111 2222 345557888887654545 557779999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCccccccccc--ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
+.+++.+. .+++.|++.+++|++...... ...+ .++..++++.. ..+..| .++|++.++.
T Consensus 101 ~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~--~~~~~d----~~~l~~~i~~ 162 (417)
T 3n0l_A 101 QGVYAALI--NPGDKILGMDLSHGGHLTHGAKVSSSG----------KMYESCFYGVE--LDGRID----YEKVREIAKK 162 (417)
T ss_dssp HHHHHHHS--CTTCEEEEECC--------------------------CCSEEEEECCC--TTSSCC----HHHHHHHHHH
T ss_pred HHHHHHhc--CCCCEEEecccccccccchhhhhhhhc----------ceeeeEeccCC--CCCCcC----HHHHHHHHHh
Confidence 99999774 367899999999987433111 1111 12222222221 122234 6788888863
Q ss_pred cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--ccc
Q 011669 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGI 326 (480)
Q Consensus 250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~ 326 (480)
. ++++|++.+.+ +|.+.+ +++|+++|++||+++|+||+|. |+...|....... ..|++++| |++
T Consensus 163 ~---~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~----~~di~~~s~sK~l 229 (417)
T 3n0l_A 163 E---KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP----YAHVVSSTTHKTL 229 (417)
T ss_dssp H---CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT----TCSEEEEESSTTT
T ss_pred c---CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc----cceEEEeeCcccc
Confidence 2 46677765533 366554 9999999999999999999974 3322331110111 24777655 999
Q ss_pred ccCccccccccC-HHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669 327 GNGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGII 401 (480)
Q Consensus 327 g~G~pig~v~~~-~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 401 (480)
+|++.||++++ +++++.+..... +.+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+. .+..+
T Consensus 230 -~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 306 (417)
T 3n0l_A 230 -RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLV 306 (417)
T ss_dssp -CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEG
T ss_pred -CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceec
Confidence 66788999998 788877765332 23334456666666666665332 345566666667777777662 12111
Q ss_pred eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------CCCEEEEeCCCC----CCHHHHHHH
Q 011669 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------YGNVFRITPPLC----FTKEDADYL 469 (480)
Q Consensus 402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~~----~t~~~id~~ 469 (480)
. ....+.++++.+.... .....+.+.|.++||.+.+... ..+.+|++++.. +++++|+++
T Consensus 307 ~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 307 S-DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp G-GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred c-CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 1 1123456677663221 1145677788899999975421 135699987643 578999999
Q ss_pred HHHHHHHHhh
Q 011669 470 VDVMDYSLSK 479 (480)
Q Consensus 470 l~~l~~~l~~ 479 (480)
+++|++++++
T Consensus 379 ~~~l~~~l~~ 388 (417)
T 3n0l_A 379 SNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 189
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=1.9e-21 Score=196.31 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=201.8
Q ss_pred CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (480)
Q Consensus 117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG 196 (480)
.|++.+++.+++.... ...+..+...+++++|+++++.. ..++++||++|++.+++.+. ..++++|++..++||+
T Consensus 16 ~~~~~~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~ 90 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS 90 (388)
T ss_dssp CHHHHHHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred CHHHHHHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence 3899999999987632 12344678899999999999653 45667778999999999763 2356789999999998
Q ss_pred ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 276 (480)
........ |+..+.++... ..|..| .++|++.++ +++++|+ |+ +++|.+.+
T Consensus 91 ~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~--~~-n~tG~~~~---- 141 (388)
T 1b9h_A 91 SSQAAQRL-------------GAVTVPVDVDA-ATYNLD----PEAVAAAVT----PRTKVIM--PV-HMAGLMAD---- 141 (388)
T ss_dssp HHHHHHHT-------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEEC--CB-CGGGCCCC----
T ss_pred HHHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcC----cCceEEE--Ee-CCccCcCC----
Confidence 76543222 22222222111 112223 677887774 3677777 54 45676654
Q ss_pred HHHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCcceeeec--cccccCccccccccCHH-H--HHhhcCC-C
Q 011669 277 LPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE-I--AEVLTRR-N 349 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~-~--~~~l~~~-~ 349 (480)
+++|.++|++||+++|+||+|+. +...| .. +..++ ..++.+|| |++++ .++|+++++++ + ++.+... .
T Consensus 142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~ 216 (388)
T 1b9h_A 142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHS 216 (388)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTB
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHh
Confidence 99999999999999999999973 33333 11 22222 24455666 66655 48899998875 6 5544211 0
Q ss_pred c--------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-------eccc
Q 011669 350 Y--------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-------RGRG 408 (480)
Q Consensus 350 ~--------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-------~g~g 408 (480)
+ +.++..+++.++++.+.++.++ +..++.+++.+++.+.|+++ +.+... +..+
T Consensus 217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~ 290 (388)
T 1b9h_A 217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSH 290 (388)
T ss_dssp TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCC
T ss_pred CCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccce
Confidence 0 1223356676666666555432 34556666677777766653 222211 2336
Q ss_pred eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-------------------------------CCEEEEeC
Q 011669 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-------------------------------GNVFRITP 457 (480)
Q Consensus 409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------------~~~iRi~p 457 (480)
.++++.+... .......+.+.|.++||.+.++... .+.|||+.
T Consensus 291 ~~~~~~~~~~------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 364 (388)
T 1b9h_A 291 YMAMFRIPGL------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH 364 (388)
T ss_dssp SEEEEECTTC------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred EEEEEEeCCc------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence 7778876321 1123567888999999999764210 13589988
Q ss_pred CCCC-CHHHHHHHHHHHHHHHhh
Q 011669 458 PLCF-TKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 458 ~~~~-t~~~id~~l~~l~~~l~~ 479 (480)
...+ |++||++++++|++++++
T Consensus 365 ~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 365 RVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 7788 999999999999998865
No 190
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.89 E-value=8.8e-22 Score=196.16 Aligned_cols=308 Identities=12% Similarity=0.000 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHHhccccc-cccC--ChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669 116 CHPYVVDSIVNQIKRIQHST-VLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~-~~~~--~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~ 191 (480)
.+|+|.+++.+.+.+..... ..+. .+...+++++++++++. +.++|++++||++|++.+++.... . ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~---~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE---K-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS---S-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC---C-cEEEEc
Confidence 46899999988877532111 1111 24567889999999865 346899999999999999986542 3 666666
Q ss_pred CCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669 192 NAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (480)
Q Consensus 192 ~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 270 (480)
..+++.... .....+. .+..++.+. .+..| .++++ + .+++++|+++++++++|.+
T Consensus 91 ~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~--~----~~~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGR----------EAYKEEAAF----GKGFY----PADIT--V----PADAEIICLTHNETSSGVS 146 (362)
T ss_dssp CSHHHHHHHHHHHHTTC----------EEEEEECCT----TCCCC----GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred CcHHHHHHHHHHHHhCC----------CeEEEecCC----CCCCC----HHHHh--c----cCCccEEEEEcCCCCccee
Confidence 666662211 1111110 122222211 11123 34444 2 3478888888889999988
Q ss_pred eCCCChHHHHHHHHHHh-CCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcC
Q 011669 271 ELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTR 347 (480)
Q Consensus 271 ~~~~~~l~~l~~l~~~~-gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~ 347 (480)
.+ +++|.++|++| |+++|+||+|+.+... .+... .|+++ ++|.++++..+|++++++++++.+..
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~------~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK------FDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC------CCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc------cChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence 76 99999999999 9999999998732211 11111 56664 56999954456888999988776643
Q ss_pred CCc--------------------c-ccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669 348 RNY--------------------F-NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD 403 (480)
Q Consensus 348 ~~~--------------------~-~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 403 (480)
... + ..++.+..++++..++++.+.++ +..++.+++.+++.+.|+++ +.+..
T Consensus 215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 290 (362)
T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF 290 (362)
T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence 211 1 13456677777777888866543 45555666666666666543 32222
Q ss_pred Ee-----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 404 VR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 404 v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
.. ..+.++++.+.. ....+.+.|.++||.+.++.. .++++||++....+++++++++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 124566666632 256788899999999987532 3578999999889999999999999986
Q ss_pred H
Q 011669 477 L 477 (480)
Q Consensus 477 l 477 (480)
+
T Consensus 361 ~ 361 (362)
T 3ffr_A 361 I 361 (362)
T ss_dssp T
T ss_pred h
Confidence 4
No 191
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.89 E-value=3.2e-22 Score=197.50 Aligned_cols=282 Identities=14% Similarity=-0.009 Sum_probs=188.5
Q ss_pred HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecC
Q 011669 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN 224 (480)
Q Consensus 145 ~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 224 (480)
+++++|++.++.+ ..++++||++|++.+++.+. .++++|++.++.||+........... .|+....+
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~ 68 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLRK---------FGVEVDFI 68 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH---------TTCEEEEE
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHHh---------cCCEEEEe
Confidence 5788888888654 56788888999999999663 35688999999999865443221100 12222222
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hCCEEEEcccccCcccc
Q 011669 225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART 303 (480)
Q Consensus 225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~tgfgr~ 303 (480)
+. .| .+++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+ ..
T Consensus 69 ~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~ 128 (331)
T 1pff_A 69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-IL 128 (331)
T ss_dssp CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HH
T ss_pred CC-------CC----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-cc
Confidence 21 12 356766664 36899999999999998875 9999999999 99999999999732 21
Q ss_pred CCCcccccccCCCcceeeecccccc-Ccc-ccccccCH-HHHHhhcCCCcc-ccCCCcHHHHHHHHHHHHHhhhhHHHHH
Q 011669 304 GSHFWGFEAHGVVPDIVTMAKGIGN-GIP-LGAVVTTP-EIAEVLTRRNYF-NTFGGNPVCTAAGHAVLKVIQKDKLQNN 379 (480)
Q Consensus 304 G~~~~~~~~~~~~pDivt~sK~~g~-G~p-ig~v~~~~-~~~~~l~~~~~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~ 379 (480)
. .. . .++....+.+++|.+++ |.| +|++++++ ++++.+...... .+.+.+++++.++.++++.+.. ..++
T Consensus 129 ~-~~--~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 202 (331)
T 1pff_A 129 T-NP--L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKR 202 (331)
T ss_dssp C-CG--G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_pred C-Ch--h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHH
Confidence 1 11 1 23444444578999995 788 78999998 898888776655 5667888888887777765422 1222
Q ss_pred HHHHHHHHHHHHHHhH---H-------hcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669 380 AHVVGSYLKERLTALK---D-------KYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK 445 (480)
Q Consensus 380 ~~~~~~~l~~~L~~l~---~-------~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 445 (480)
..+..+.+.+.+++.. + +++.+. ..++.|.++.+.+. + ...+.+.|.++||++..
T Consensus 203 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~ 271 (331)
T 1pff_A 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLA 271 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEEC
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceec
Confidence 3333333333333321 0 011000 12346778888763 1 34577788889997743
Q ss_pred cC----------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 446 GG----------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 446 ~~----------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
.. ...+.+||+++...++++++.++++|+++
T Consensus 272 ~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 272 VSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 31 11479999999999999999999998764
No 192
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.88 E-value=3.7e-21 Score=194.85 Aligned_cols=319 Identities=13% Similarity=0.076 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (480)
Q Consensus 117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG 196 (480)
+|++.+++.+.+... +... ..+...+++++|+++++. +++++++||++|++.+++.+. ..++++|++..++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~ 84 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA 84 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence 367888888887653 1110 125688999999999854 789999999999999999763 2356889999999998
Q ss_pred ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~ 276 (480)
........ |...+.++.. ..|..| .+++++.++.. ++++++|++++ ++|.. ..
T Consensus 85 ~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~~~-~~~~~~v~~~~---~~G~~----~~ 137 (394)
T 1o69_A 85 SVAPICYL-------------KAKPVFIDCD--ETYNID----VDLLKLAIKEC-EKKPKALILTH---LYGNA----AK 137 (394)
T ss_dssp GTHHHHHT-------------TCEEEEECBC--TTSSBC----HHHHHHHHHHC-SSCCCEEEEEC---GGGCC----CC
T ss_pred HHHHHHHc-------------CCEEEEEEeC--CCCCcC----HHHHHHHHhcc-cCCceEEEEEC---CCCCh----hh
Confidence 76554432 2222222211 122223 67888888642 12577888876 34533 44
Q ss_pred HHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccC-HHHHHhhcCCCc-c
Q 011669 277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRNY-F 351 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~~-~ 351 (480)
+++|.++|++||+++|+||+|+ |+.+.| ...+ .++ .+|+.+|| |.++ |.++|+++++ +++++.+..... +
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~ 212 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKN-KALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQA 212 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETT-EETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTC
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCC-cccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999998 665544 2110 111 36788885 6665 4689999995 787776643111 1
Q ss_pred -------------ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--ccce-eEEEEE
Q 011669 352 -------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGF-LLGVEF 415 (480)
Q Consensus 352 -------------~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~-~~~i~~ 415 (480)
.+++.+++.++++++.++.++ +..++.+++.+++++.|.++ -+. ..... ..+. ++++.+
T Consensus 213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~--~~~~~~~~~~~~~~~i~~ 287 (394)
T 1o69_A 213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSF--LDELENSRSNRWLSTALI 287 (394)
T ss_dssp CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EEC--CCCCTTEECCCSSEEEEE
T ss_pred cccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccc--cCCCCCCcceeEEEEEEe
Confidence 112246677777766665443 35677788888888888765 111 11111 0122 345555
Q ss_pred ecCC-------------CcCCCCHHHHHHHHHHHHHcCceeeccCc-------CC---------------CEEEEeCCCC
Q 011669 416 VTDR-------------QLKTPAKAETLYIMDKMKEMGVLVGKGGF-------YG---------------NVFRITPPLC 460 (480)
Q Consensus 416 ~~~~-------------~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~---------------~~iRi~p~~~ 460 (480)
..+. ............+.+.|.++||.+.++.. +. ..+|+.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T 1o69_A 288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTA 367 (394)
T ss_dssp SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTT
T ss_pred cchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCC
Confidence 3110 00000012356788999999999987621 00 2345555667
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 011669 461 FTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 461 ~t~~~id~~l~~l~~~l~ 478 (480)
+|++|+++++++|+++++
T Consensus 368 ~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 368 MSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999998875
No 193
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.88 E-value=6.8e-22 Score=204.16 Aligned_cols=291 Identities=18% Similarity=0.153 Sum_probs=188.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669 137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ 216 (480)
Q Consensus 137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~ 216 (480)
.+.++...+++++++++++. +++++++||++|+..++++ ..+++.||+.++.||+......... ..
T Consensus 129 ~~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~~---~~~Gd~Vi~~~~~y~~~~~~~~~~~---------~~ 194 (464)
T 1ibj_A 129 RSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVV---------PR 194 (464)
T ss_dssp TTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTS---------GG
T ss_pred CCCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH---hCCCCEEEEECCCchhHHHHHHHHH---------HH
Confidence 44577888999999999864 4788999999999988762 3467899999999987643210000 00
Q ss_pred CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669 217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296 (480)
Q Consensus 217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv 296 (480)
.|+..+.+|. .| .+++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+
T Consensus 195 ~G~~v~~v~~-------~d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea 255 (464)
T 1ibj_A 195 SGVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNS 255 (464)
T ss_dssp GTCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECT
T ss_pred cCCEEEEeCC-------CC----HHHHHHHhc----cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECC
Confidence 1333333222 12 577887774 37899999999999998875 99999999999999999999
Q ss_pred ccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669 297 QAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371 (480)
Q Consensus 297 ~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i 371 (480)
|.. |... . ..+ ++ .|++ +++|.+++ |+++||++++ +++++.+.........+.+++++.++.++|+.+
T Consensus 256 ~~~-g~~~-~--~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 256 IMS-PVLS-R--PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp TTC-TTTC-C--GGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred Ccc-cccC-C--hhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence 963 2111 1 122 33 5666 68999985 8999999998 478777654322223445788888888777532
Q ss_pred hh--hHHHHHHHHHHHHHHHHH------HHhHHhcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc
Q 011669 372 QK--DKLQNNAHVVGSYLKERL------TALKDKYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439 (480)
Q Consensus 372 ~~--~~~~~~~~~~~~~l~~~L------~~l~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (480)
.. +...+++..+.+++++.- .+...+++.+. ..++.|.++++++. . ......+.+.|+..
T Consensus 329 ~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~-------~~~~~~~~~~L~~~ 400 (464)
T 1ibj_A 329 ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S-------VALSKHLVETTKYF 400 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C-------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-C-------HHHHHHHHHhcCcc
Confidence 21 112223333333322110 00001111111 12346778888862 1 11234577777777
Q ss_pred CceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 440 GVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 440 Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
||.+..|+ ...+++||++++ +++++++++|++++++
T Consensus 401 gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 401 SIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp EECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred eEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 88776653 113689999875 8999999999999875
No 194
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=2.2e-21 Score=196.84 Aligned_cols=290 Identities=14% Similarity=0.079 Sum_probs=188.2
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccccc-ccCCCcc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA-TAQSNWK 211 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~-~~~~~~~ 211 (480)
+....+.++...+|+++|+++.+. +.+++++||++|++.++.+ ..+++.||+.++.|||........ ..
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~----- 128 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMEL---LDAGSHVVAMDDLYGGTFRLFERVRRR----- 128 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTHHH-----
T ss_pred cccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHH---cCCCCEEEEeCCCchHHHHHHHHhhHh-----
Confidence 445677889999999999999864 4788999999999985442 236788999999998755443222 00
Q ss_pred ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291 (480)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 291 (480)
..|+....++. +| .++++++++ +++++|++|+++|++|.+.+ +++|+++|++||+++
T Consensus 129 ----~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~l 185 (400)
T 3nmy_A 129 ----TAGLDFSFVDL-------TD----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLT 185 (400)
T ss_dssp ----HHCCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred ----hcCeEEEEECC-------CC----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEE
Confidence 01222222221 12 577887774 37899999999999999876 999999999999999
Q ss_pred EEcccccCccccCCCcccccccCCCcceeeecccccc-Cccccc--cc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGA--VV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV 367 (480)
Q Consensus 292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pig~--v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~ 367 (480)
|+||+|+.. ... . ...++..+.+.+++|.+++ |.++|+ ++ .++++++.+.......+...+|+.+++++..
T Consensus 186 ivDe~~~~~-~~~-~---~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~ 260 (400)
T 3nmy_A 186 VVDNTFASP-MLQ-R---PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRG 260 (400)
T ss_dssp EEECTTTHH-HHC-C---GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHH
T ss_pred EEECCCccc-ccC-C---hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 999999632 111 1 1123555555679999996 577765 33 4677887776544445566788888887777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHH
Q 011669 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET 429 (480)
Q Consensus 368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~ 429 (480)
++.+. ...++..++..++.+.|+ +++.+..+ +|.|.|++|++..+ ....
T Consensus 261 l~~l~--~r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-------~~~~ 327 (400)
T 3nmy_A 261 LKTLP--LRMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-------FDAA 327 (400)
T ss_dssp HTTHH--HHHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-------HHHH
T ss_pred HhHHH--HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-------HHHH
Confidence 66432 233444444555544443 34555555 78899999998421 1234
Q ss_pred HHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 430 LYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 430 ~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
..+.+.|.-.++.+..|+ ...+.+|++..+..+++ +++.|+++|
T Consensus 328 ~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~d----li~dl~~al 396 (400)
T 3nmy_A 328 KRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGD----LRGDLERAL 396 (400)
T ss_dssp HHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH----HHHHHHHHH
T ss_pred HHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHH----HHHHHHHHH
Confidence 455555543333332221 12468999976654444 445555554
No 195
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.87 E-value=1.3e-20 Score=193.30 Aligned_cols=293 Identities=16% Similarity=0.101 Sum_probs=191.0
Q ss_pred cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (480)
Q Consensus 132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 211 (480)
.|....+.++...+++++|+++++.. ..++++||++|++.+++.... +++.||+.++.|++.........
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~------ 174 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETIL------ 174 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTG------
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHH------
Confidence 35455677899999999999998653 567888999999999986533 56889999999987433211000
Q ss_pred ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (480)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 290 (480)
...|+....++. +| .++++++++. ++ ++|++|+++|++|.+.+ +++|.++|++||++
T Consensus 175 ---~~~G~~v~~v~~-------~d----~~~l~~ai~~----~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~ 232 (445)
T 1qgn_A 175 ---PKMGITATVIDP-------AD----VGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGAL 232 (445)
T ss_dssp ---GGGTCEEEEECS-------SC----HHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCE
T ss_pred ---HHcCCEEEEeCC-------CC----HHHHHHHhcc----CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCE
Confidence 011333332221 13 6788888863 45 89999999999998876 99999999999999
Q ss_pred EEEcccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHH
Q 011669 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366 (480)
Q Consensus 291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 366 (480)
+|+||+|+.. ... ...+..+|+++ ++|.+++ | .++|++++++++++.+...........+|+.+.+++.
T Consensus 233 livD~a~~~~-~~~------~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~ 305 (445)
T 1qgn_A 233 VCIDGTFATP-LNQ------KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIR 305 (445)
T ss_dssp EEEECTTTCT-TTC------CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred EEEECCCccc-ccC------CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999732 111 12234578775 7899986 3 4899999999988877542211112236776666666
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHH
Q 011669 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAE 428 (480)
Q Consensus 367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~ 428 (480)
.++.+. ...++..+..+++.+.|++. +.+.. +++.|.+++|++... ...
T Consensus 306 ~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~ 372 (445)
T 1qgn_A 306 GMKTLH--LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLT 372 (445)
T ss_dssp HGGGHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHH
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHH
Confidence 555432 12233344455555555543 32211 235788899988421 122
Q ss_pred HHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669 429 TLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 429 ~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
...+.+.|...++.+..|+ ...+.|||+.. .||+|.+++.|+++++++
T Consensus 373 ~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 373 TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhhC
Confidence 4555555543344433321 12368999955 468999999999998754
No 196
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=6.7e-21 Score=194.75 Aligned_cols=290 Identities=16% Similarity=0.115 Sum_probs=189.8
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
+....+.++...+++++|+++++.. ..++++||++|++.+++.+. .++++||+..+.||+..........
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~------ 119 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA--QAGDNIVSTPNLYGGTFNQFKVTLK------ 119 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEECSCCCHHHHHHHHTHHH------
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHHH------
Confidence 4445567788999999999999653 56788889999999999763 4678999999999987655422110
Q ss_pred cccCCCeeEecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669 213 NVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291 (480)
Q Consensus 213 ~~~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill 291 (480)
..|+....+ +. +| .+++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++
T Consensus 120 ---~~g~~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~l 177 (421)
T 2ctz_A 120 ---RLGIEVRFTSRE-------ER----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVAL 177 (421)
T ss_dssp ---HTTCEEEECCTT-------CC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEE
T ss_pred ---HcCCEEEEECCC-------CC----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence 013333333 21 12 577888775 37899999999999998876 999999999999999
Q ss_pred EEcccccCccccCCCcccccccCCCccee--eecccccc-CccccccccC---HHH----HHhhcCC---Ccc-------
Q 011669 292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT---PEI----AEVLTRR---NYF------- 351 (480)
Q Consensus 292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~---~~~----~~~l~~~---~~~------- 351 (480)
|+||+|+++|..+ ..+ +..+|++ +++|.+++ |.|+|++++. +++ .+.+... .++
T Consensus 178 ivD~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~ 251 (421)
T 2ctz_A 178 IVDNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF 251 (421)
T ss_dssp EEECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHH
T ss_pred EEECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhc
Confidence 9999996677655 322 2347887 78899996 7899988774 122 1122211 000
Q ss_pred ----------------ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-----------
Q 011669 352 ----------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV----------- 404 (480)
Q Consensus 352 ----------------~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v----------- 404 (480)
.....+|+.+++++..++.+. ...++..++.+++.+.|++ ++.+..+
T Consensus 252 ~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~ 325 (421)
T 2ctz_A 252 GELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHH 325 (421)
T ss_dssp GGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTH
T ss_pred chhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCH
Confidence 112457888777777776442 2233334555555555544 3434333
Q ss_pred --------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------------------------cCCC
Q 011669 405 --------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------------------FYGN 451 (480)
Q Consensus 405 --------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~ 451 (480)
++.|.++.|++... ......+.+.+...++.+..|+ ...+
T Consensus 326 ~~~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~ 398 (421)
T 2ctz_A 326 DRAQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE 398 (421)
T ss_dssp HHHHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred HHHHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCC
Confidence 47788999988421 1234445555443443333221 1137
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 452 VFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 452 ~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
.+|+++.+ +++|.+++.|++++
T Consensus 399 ~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 399 MVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp EEEEECCS----SCHHHHHHHHHHHT
T ss_pred eEEEEeCC----CCHHHHHHHHHHHh
Confidence 89999654 57888888888776
No 197
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.86 E-value=1.8e-20 Score=189.76 Aligned_cols=294 Identities=16% Similarity=0.121 Sum_probs=188.6
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
|....+.++...+++++|+++++.+ .+++++||+||++.+++ .. .+++.||+..+.||+.........
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~--~~gd~Vi~~~~~y~~~~~~~~~~~------- 114 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL--PQGSHAVSIGDVYGGTHRYFTKVA------- 114 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS--CSSCEEEEESSCCHHHHHHHHHTS-------
T ss_pred cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc--CCCCEEEEeCCCchHHHHHHHHHH-------
Confidence 4445667788899999999999654 67788899999999999 32 356889999999987433210000
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh----C
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----G 288 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----g 288 (480)
...|+....+|. + . ++++++++ +++++|++++++|++|.+.+ +++|.++|++| |
T Consensus 115 --~~~G~~v~~v~~--------~---d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~ 172 (393)
T 1n8p_A 115 --NAHGVETSFTND--------L---L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQD 172 (393)
T ss_dssp --TTTCSCCEEESS--------H---H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTT
T ss_pred --HHcCcEEEEeCC--------C---h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCC
Confidence 001222222211 1 1 46666664 37899999999999999876 99999999999 9
Q ss_pred CEEEEcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccC-HHHHHhhcCCCccccCCCcHHHHHH
Q 011669 289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAA 363 (480)
Q Consensus 289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa 363 (480)
+++|+||+|+++.+. ..+ .++ +|++ +++|.+++ |+|+ |+++++ +++++.+...........++..+++
T Consensus 173 ~~livD~a~~~~~~~--~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 245 (393)
T 1n8p_A 173 VILVVDNTFLSPYIS--NPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWL 245 (393)
T ss_dssp CEEEEECTTTHHHHC--CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred CEEEEeCCccccccC--CHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999876442 222 123 5666 78899995 8999 888885 7888777543221223346777777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH---h--cCcee----------eEec-c-ceeEEEEEecCCCcCCCCH
Q 011669 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD---K--YGIIG----------DVRG-R-GFLLGVEFVTDRQLKTPAK 426 (480)
Q Consensus 364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~---~--~~~~~----------~v~g-~-g~~~~i~~~~~~~~~~~~~ 426 (480)
+.++++.+. ...++..+....+.+.|++... . ++.+. ..++ . |.+++|++.. ..
T Consensus 246 ~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-------~~ 316 (393)
T 1n8p_A 246 THRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-------GA 316 (393)
T ss_dssp HHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-------CH
T ss_pred HHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-------cH
Confidence 666665432 2233334444445454443210 0 11110 0133 5 7788888832 12
Q ss_pred HHHHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 427 AETLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 427 ~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
.....+...|...++.+..|+ ...+.|||++....++++|+.+.++|+++
T Consensus 317 ~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 317 EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 234555555543343332211 11368999999999999999999999875
No 198
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.86 E-value=2.9e-20 Score=189.69 Aligned_cols=317 Identities=14% Similarity=0.073 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHHHHhcccc---ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669 116 CHPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~---~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~ 192 (480)
-+|++.+++.+++.+.... ...+..+...+++++|++.++.+ .+++++||++|++.+++.++. .++++|++..+
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~ 90 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI-GEGDEVIVPSL 90 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC-CTTCEEEEESS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCC
Confidence 3689999999999874322 11222445889999999998643 678899999999999997632 35678999999
Q ss_pred CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669 193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272 (480)
Q Consensus 193 ~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~ 272 (480)
+|++........ |...+.++... ..|..| .+++++.++ +++++|++++ ++|...
T Consensus 91 ~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~- 144 (418)
T 2c81_A 91 TWIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMA- 144 (418)
T ss_dssp SCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCC-
T ss_pred ccHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCcc-
Confidence 999876554322 22222222110 112223 566766664 3678888654 456544
Q ss_pred CCChHHHHHHHHHHhCCEEEEcccccCcc-ccCCCcccccccCCCcceeee--ccccccCccccccccC-HHHHHhhcCC
Q 011669 273 APGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTT-PEIAEVLTRR 348 (480)
Q Consensus 273 ~~~~l~~l~~l~~~~gillI~DEv~tgfg-r~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig~v~~~-~~~~~~l~~~ 348 (480)
.+++|.++|++||+++|+||+|+.+. ..+ ..+ ...+ ..++.+| +|.+++| ++|+++++ +++++.+...
T Consensus 145 ---~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~ 216 (418)
T 2c81_A 145 ---NMDEINEIAQEHNLFVIEDCAQSHGSVWNN-QRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQL 216 (418)
T ss_dssp ---CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHCCCEEEEECcccccCccCC-Eec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHH
Confidence 39999999999999999999998764 233 111 1111 2344566 8999988 99999985 7776655421
Q ss_pred C-ccc-----------cCC--------------CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669 349 N-YFN-----------TFG--------------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (480)
Q Consensus 349 ~-~~~-----------t~~--------------~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 402 (480)
. ++. .|. .+++..+.+...++.+ ++..++.+++.+++.+.|.++ +.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~ 290 (418)
T 2c81_A 217 RADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGIK 290 (418)
T ss_dssp HBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTEE
T ss_pred HHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcc
Confidence 1 000 011 2344333333333322 345555666666666666443 2222
Q ss_pred eE-eccc----e--eEEEEEecCCCcCCCCHHHHHHHHHHHHHc-Cce---eeccCc-----------------------
Q 011669 403 DV-RGRG----F--LLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVL---VGKGGF----------------------- 448 (480)
Q Consensus 403 ~v-~g~g----~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---v~~~~~----------------------- 448 (480)
.. ...+ . ++.+.+..... .......+.+.|.++ ||. +.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 366 (418)
T 2c81_A 291 VMKRPPQVSRQTYYGYVFRFDPVKF----GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKT 366 (418)
T ss_dssp ECCCCTTEEECCCSEEEEEECGGGT----TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCC
T ss_pred cCCCCCCCcccccEEEEEEEccccc----cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccc
Confidence 21 1222 2 22345421000 001246788889998 999 765420
Q ss_pred --------C-------CCEEEEeCCCCC-CHHHHHHHHHHHHHHHhh
Q 011669 449 --------Y-------GNVFRITPPLCF-TKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 449 --------~-------~~~iRi~p~~~~-t~~~id~~l~~l~~~l~~ 479 (480)
. .+.|||+++..+ |++||+.++++|++++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 367 EAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 148999999899 999999999999998865
No 199
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.86 E-value=1.4e-20 Score=191.09 Aligned_cols=291 Identities=12% Similarity=0.030 Sum_probs=189.0
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669 136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV 215 (480)
Q Consensus 136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~ 215 (480)
..|.++...+|+++|+++++.. ..++++||++|+..+++ + ..+++.|++.++.|++..........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~--------- 127 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS--------- 127 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG---------
T ss_pred cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH---------
Confidence 4567888999999999998654 55677888999999998 4 33678999999999874432211100
Q ss_pred CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC-CEEEEc
Q 011669 216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIAD 294 (480)
Q Consensus 216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~D 294 (480)
..|+....++. +| .+++++.++ +++++|++++++|++|.+.+ +++|.++|++|| +++|+|
T Consensus 128 ~~G~~v~~v~~-------~d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD 188 (403)
T 3cog_A 128 EFGLKISFVDC-------SK----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD 188 (403)
T ss_dssp GGTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred HcCCEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence 01333333321 12 567777774 37899999999999998876 999999999999 999999
Q ss_pred ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669 295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369 (480)
Q Consensus 295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~ 369 (480)
|+|+++.. + .. + +..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+++.+.++++.|+
T Consensus 189 ~~~~~~~~-~-~~--~---~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 189 NTFMSPYF-Q-RP--L---ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp CTTTCTTT-C-CT--T---TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred CCCccccc-C-Cc--c---ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 99986532 2 11 1 2346766 78899994 4 689999985 7888777654333445578888888877776
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh----------HHhcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669 370 VIQKDKLQNNAHVVGSYLKERLTAL----------KDKYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435 (480)
Q Consensus 370 ~i~~~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 435 (480)
.+. ...++..+....+.+.+++. ...++.+. ..++.|.++.+++... .....+.
T Consensus 262 ~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~ 329 (403)
T 3cog_A 262 TLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIF 329 (403)
T ss_dssp THH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHH
Confidence 432 12333333333344444332 11111111 1234588888876321 1334556
Q ss_pred HHHcCceeec---c-------------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 436 MKEMGVLVGK---G-------------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 436 l~~~Gv~v~~---~-------------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
+.+.|+++.. | +...+.+||++.+..++++|+.+.++|+++++
T Consensus 330 l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 330 LKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 6677876432 1 11147899999998888888888888877654
No 200
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.86 E-value=7.6e-21 Score=193.28 Aligned_cols=322 Identities=10% Similarity=0.002 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhc-cccccccCChHHHHHHHHHHHhC-C----CCCCEEEEeCCHHHHHHHHHHHHHh-h-cCCceEEE
Q 011669 118 PYVVDSIVNQIKRI-QHSTVLYLNHAIADFAEALASKM-P----GNLKVVFFTNSGTEANELAIMMARL-Y-TGCNDIIS 189 (480)
Q Consensus 118 p~v~~A~~~~~~~~-~~~~~~~~~~~~~~l~e~L~~~~-~----~~~~~v~f~~sGseA~~~Alk~ar~-~-~~~~~ii~ 189 (480)
|.|.+|.++.++.. .| ...+.....+|++.+++++ + .+.....-|.+||.|+..++.++.. + .+++.|++
T Consensus 65 ~~Vk~A~~~~~~~~~~~--~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~i 142 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDY--EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYL 142 (420)
T ss_dssp HHHHHHHHHHHHTTCCC--CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEE
T ss_pred HHHHHHHHHHhcCCCCC--CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEE
Confidence 78888877666543 12 1223456677777777654 1 1112345588999999999876543 2 36788999
Q ss_pred EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669 190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI 269 (480)
Q Consensus 190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~ 269 (480)
.+|+|..+........+... ...++.+ ...++.| .+.+.+.++.. .++..+++..+.+|++|.
T Consensus 143 p~P~w~~y~~i~~~aG~~~V----------~~~~~~~--~~~~~~d----~~~~~~~l~~~-~~~~~vll~~~p~NPtG~ 205 (420)
T 4h51_A 143 SDPTWPNHYGVVKAAGWKNI----------CTYAYYD--PKTVSLN----FEGMKKDILAA-PDGSVFILHQCAHNPTGV 205 (420)
T ss_dssp EESCCTHHHHHHHHTTCCCE----------EEEECEE--GGGTEEC----HHHHHHHHHHS-CSSCEEEEESSSCTTTCC
T ss_pred ecCCchhHHHHHHHcCCeEE----------Eeecccc--ccccCCC----HHHHHHHHhcc-CCCcEEEEeCCCCCCCCC
Confidence 99999765544443332111 1111100 0111123 34444555443 346677777878888887
Q ss_pred eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--cccc----cccCCCcceeeeccccc-cCccccccccCHHHH
Q 011669 270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGF----EAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIA 342 (480)
Q Consensus 270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~----~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~ 342 (480)
+ ++++.+++|.++|+++++++|+||+|.+|...+.. .+.. +......-+.+|||.++ .|+|+||+++..+..
T Consensus 206 ~-~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~ 284 (420)
T 4h51_A 206 D-PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDK 284 (420)
T ss_dssp C-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCH
T ss_pred C-CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCH
Confidence 6 58999999999999999999999999999754311 1111 11111222348999999 699999998764433
Q ss_pred HhhcC-------CCccccCCCcHHHHHHHHHHHHHhh-hh-------HHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669 343 EVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQ-KD-------KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (480)
Q Consensus 343 ~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~-~~-------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~ 407 (480)
+.... .......+.+..++.++...|..-. .. ...++++++++.+.+.|+++.-...+-......
T Consensus 285 ~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~ 364 (420)
T 4h51_A 285 TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQI 364 (420)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCC
T ss_pred HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCC
Confidence 22211 1112233444555555555553100 01 223334444444444444431100011113456
Q ss_pred ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
|+|.++.+. .+.++.|+++||++.++| ||+.. ..+++.|+.++++|.+++++
T Consensus 365 GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g------Ris~A-gl~~~ni~~~a~aI~~vvr~ 416 (420)
T 4h51_A 365 GMFSFLGLS-------------KAQCEYCQNHNIFITVSG------RANMA-GLTHETALMLAQTINDAVRN 416 (420)
T ss_dssp SSEEECCCC-------------HHHHHHHHHTTEECCTTC------EEEGG-GCCHHHHHHHHHHHHHHHC-
T ss_pred ceEEecCcC-------------HHHHHHHHhCCEEEcCCC------EEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 777665431 123567889999988754 88854 46999999999999999875
No 201
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.86 E-value=2.3e-19 Score=181.27 Aligned_cols=305 Identities=14% Similarity=0.126 Sum_probs=198.6
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH-----hhcCCceEEEE
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-----LYTGCNDIISL 190 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar-----~~~~~~~ii~~ 190 (480)
-+|++.+++.+++....+ +..+...+++++|+++++. +.++|++||++|++.+++.++ ...++++|++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~ 86 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVP 86 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEEC
Confidence 368999999999876432 3468889999999999965 468899999999999999773 13456889999
Q ss_pred cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (480)
Q Consensus 191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~ 270 (480)
.++||+........ |...+.++.... .+.-| .+++++.++ +++++|++.+. .|..
T Consensus 87 ~~~~~~~~~~~~~~-------------g~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~~---~g~~ 141 (390)
T 3b8x_A 87 AVSWSTTYYPLQQY-------------GLRVKFVDIDIN-TLNID----IESLKEAVT----DSTKAILTVNL---LGNP 141 (390)
T ss_dssp SSSCHHHHHHHHHT-------------TCEEEEECBCTT-TCSBC----HHHHHHHCC----TTEEEEEEECG---GGCC
T ss_pred CCCcHHHHHHHHHc-------------CCEEEEEecCcc-ccCcC----HHHHHHHhC----cCCeEEEEECC---ccCh
Confidence 99999877654432 222222221100 12223 677887774 26777777532 3333
Q ss_pred eCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeeccccccCc---cccccccCH-HHHHhh
Q 011669 271 ELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI---PLGAVVTTP-EIAEVL 345 (480)
Q Consensus 271 ~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~---pig~v~~~~-~~~~~l 345 (480)
..+++|.++|++||+++|+||+|+ |... .....+..+|+.++||..+.++ +.|++++++ ++.+.+
T Consensus 142 ----~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~ 211 (390)
T 3b8x_A 142 ----NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHIL 211 (390)
T ss_dssp ----CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHH
T ss_pred ----hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHH
Confidence 349999999999999999999998 3222 1234567789998886554221 347888775 665433
Q ss_pred cC---CC----------------------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 011669 346 TR---RN----------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394 (480)
Q Consensus 346 ~~---~~----------------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l 394 (480)
.. .. .+.++..+++.++++++.|+.++ +..++.+++.+++++.|+++
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~ 289 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH 289 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence 21 11 01233367888888888887553 45667777777777776653
Q ss_pred HHhcCceeeEe--ccce--eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc---C-----c-CC-----------
Q 011669 395 KDKYGIIGDVR--GRGF--LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG---G-----F-YG----------- 450 (480)
Q Consensus 395 ~~~~~~~~~v~--g~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~-----~-~~----------- 450 (480)
+.+.... .... .+.+.+.... ......+.+.|.++||.+.+. . . +.
T Consensus 290 ----~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (390)
T 3b8x_A 290 ----PYLDVQQETGESSWFGFSFIIKKDS------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVD 359 (390)
T ss_dssp ----SSEEECCCCSBCCCCEEEEEECTTS------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCH
T ss_pred ----CCcccCCCCCCcccEEEEEEecCcC------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCCh
Confidence 2221111 1222 2444442110 011466888899999998762 1 0 00
Q ss_pred -------CEEEEeCCCCCCHHHHHHHHHHH
Q 011669 451 -------NVFRITPPLCFTKEDADYLVDVM 473 (480)
Q Consensus 451 -------~~iRi~p~~~~t~~~id~~l~~l 473 (480)
+.|||+....+|++|++++++.|
T Consensus 360 ~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 360 NAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 25999999999999999999876
No 202
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.85 E-value=7.6e-20 Score=187.77 Aligned_cols=326 Identities=17% Similarity=0.140 Sum_probs=202.0
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk 176 (480)
+|+.+|.+... .-++++.+++.+++.... .++.+...+++++|+++++. +.++|++||++|++.+++
T Consensus 29 ~~~~~i~~~~~-------~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~g~--~~~i~~~sGt~a~~~al~ 95 (437)
T 3bb8_A 29 AGKSVVPPSGK-------VIGTKELQLMVEASLDGW----LTTGRFNDAFEKKLGEYLGV--PYVLTTTSGSSANLLALT 95 (437)
T ss_dssp TTTSCBCSCCC-------CCCHHHHHHHHHHHHHCC----CBSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCC-------CCCHHHHHHHHHHHHcCC----cCCChHHHHHHHHHHHHHCC--CcEEEeCCHHHHHHHHHH
Confidence 35666666321 125899999999887643 34567889999999999965 478899999999999998
Q ss_pred HHH------h-hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669 177 MAR------L-YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (480)
Q Consensus 177 ~ar------~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (480)
.+. . ..++++|++..++|++........ |+..+.++... ..+.-| .+++++.++
T Consensus 96 ~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~- 156 (437)
T 3bb8_A 96 ALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQN-------------GLIPVFVDVDI-PTYNVN----ASLIEAAVS- 156 (437)
T ss_dssp HTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHT-------------TCEEEECCEET-TTTEEC----GGGHHHHCC-
T ss_pred HhhhcccccccCCCcCEEEECCCCcHHHHHHHHHc-------------CCEEEEEeccC-ccCCcC----HHHHHHhcC-
Confidence 763 1 235678999999999877655432 22222222110 011112 456777764
Q ss_pred cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--ecccc
Q 011669 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGI 326 (480)
Q Consensus 250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~sK~~ 326 (480)
+++++|++... .|.. ..+++|.++|++||+++|+||+|+ |....+ ...+..+|+++ |+|+.
T Consensus 157 ---~~~~~v~~~~~---~g~~----~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~d~~~~s~~~~k 220 (437)
T 3bb8_A 157 ---DKTKAIMIAHT---LGNL----FDLAEVRRVADKYNLWLIEDCCDALGSTYDG------KMAGTFGDIGTVSFYPAK 220 (437)
T ss_dssp ---TTEEEEEEECG---GGCC----CCHHHHHHHHHHHTCEEEEECTTCTTCEETT------EETTSSSSEEEEECSTTS
T ss_pred ---CCCeEEEEeCC---CCCh----hcHHHHHHHHHHcCCEEEEECccccCceECC------eecccccCEEEEECcCCc
Confidence 35777777432 2333 349999999999999999999998 332222 23344578754 43443
Q ss_pred c-cCccccccccCHHHH-Hhh---cCCC------------------------------------ccccCCCcHHHHHHHH
Q 011669 327 G-NGIPLGAVVTTPEIA-EVL---TRRN------------------------------------YFNTFGGNPVCTAAGH 365 (480)
Q Consensus 327 g-~G~pig~v~~~~~~~-~~l---~~~~------------------------------------~~~t~~~~~~~~aaa~ 365 (480)
+ +|.+.|+++++++.+ +.+ .... .+.++..+++.+++++
T Consensus 221 ~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l 300 (437)
T 3bb8_A 221 HITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL 300 (437)
T ss_dssp SSCCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHH
Confidence 3 445789999885543 321 1100 0112234588888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH--hcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKD--KYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL 442 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 442 (480)
++|+.+ ++..++.+++.+++++.|+++.. .++.....+..+. .+.+.+... .......+.+.|.++||.
T Consensus 301 ~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~GI~ 372 (437)
T 3bb8_A 301 AQLERI--EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKED------SGVSRIDLVKFLDEAKVG 372 (437)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGG------GSSCHHHHHHHHHHTTBC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCc------CcCcHHHHHHHHHHCCCc
Confidence 888754 44555567777778777766421 0110000000121 112222111 001146788899999999
Q ss_pred eeccCc--------C------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 443 VGKGGF--------Y------------------GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 443 v~~~~~--------~------------------~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
++++.. + .+.+||+....+|++||+.++++|+++++
T Consensus 373 v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 373 TRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred eeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 876521 1 12499998889999999999999998765
No 203
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.85 E-value=3.3e-21 Score=195.08 Aligned_cols=319 Identities=10% Similarity=0.031 Sum_probs=189.8
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHH-hccccccccCC-hHH-----HHHHHHHHHhCCC-----CC-CEEEE
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLN-HAI-----ADFAEALASKMPG-----NL-KVVFF 163 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~~-~~~-----~~l~e~L~~~~~~-----~~-~~v~f 163 (480)
.|...|||..|.+.. ..++.+.+++.+.+. ........|.. ... .+|++.+++++.. .. ++|++
T Consensus 20 ~~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~ 96 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTA---YEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVV 96 (391)
T ss_dssp TTTSCEECSSCCCGG---GHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEE
T ss_pred CCCCeeEcCCCCCCC---CCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEE
Confidence 456678988776643 112344444322111 00011122332 222 6777777776531 23 58999
Q ss_pred eCCHHHHHHHHHHHHHhhcCCc----eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669 164 TNSGTEANELAIMMARLYTGCN----DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239 (480)
Q Consensus 164 ~~sGseA~~~Alk~ar~~~~~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~ 239 (480)
|+|+++|+..+++.... +++ .|++.+++|.++......... .. ..++. |
T Consensus 97 t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~~----------~~~~~----------d---- 149 (391)
T 3bwn_A 97 GTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRS-GM----------YKWEG----------D---- 149 (391)
T ss_dssp EEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCB-TT----------EEEEE----------E----
T ss_pred eCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCC-eE----------EEecC----------C----
Confidence 99999999999987654 566 899999999876554432211 11 11111 0
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hC--CEEEEcccccCccccCCCcccccccCCC
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AG--GLCIADEVQAGFARTGSHFWGFEAHGVV 316 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~g--illI~DEv~tgfgr~G~~~~~~~~~~~~ 316 (480)
.+.++ ..++++|++...+|++|.+. + +| |++ |+ +++|+||+|.. +. . .... ...+..
T Consensus 150 ~~~l~-------~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~ii~De~y~~-~~-~-~~l~-~~~~~~ 209 (391)
T 3bwn_A 150 AWGFD-------KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAKVIHDFAYYW-PH-Y-TPIT-RRQDHD 209 (391)
T ss_dssp STTCC-------CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCEEEEECTTCS-TT-T-SCCC-CCBCCS
T ss_pred HHHcC-------CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCEEEEeCCCCC-CC-C-Cccc-cCCCCe
Confidence 01111 12566776666677888775 2 22 334 66 99999999963 21 1 1111 122333
Q ss_pred cceeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Q 011669 317 PDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--------DKLQNNAHVVGSY 386 (480)
Q Consensus 317 pDivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--------~~~~~~~~~~~~~ 386 (480)
..+.+|||.+| .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...+ +.+.+++++.-+.
T Consensus 210 i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (391)
T 3bwn_A 210 IMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKN 289 (391)
T ss_dssp EEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHH
T ss_pred EEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHH
Confidence 44558999998 7999999997 889988877654445678899999999998875321 2333333333333
Q ss_pred HHHHHHHhHHhcCceee--------------EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---
Q 011669 387 LKERLTALKDKYGIIGD--------------VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--- 449 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~--------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--- 449 (480)
.++.+.+..++++.+.. ....|+++|+.+... ..+.+.|.++||.+.++..+
T Consensus 290 ~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~ 358 (391)
T 3bwn_A 290 RWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSD 358 (391)
T ss_dssp HHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCC
T ss_pred HHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCC
Confidence 33333333333332211 123456788887321 23566778899999998655
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 450 GNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
.+++||++. .+++++++++++|.++++
T Consensus 359 ~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 359 KKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp TTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 468999955 589999999999987654
No 204
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.85 E-value=2.6e-20 Score=185.67 Aligned_cols=321 Identities=9% Similarity=0.011 Sum_probs=194.1
Q ss_pred EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------cccc-cc--CChHHHHHHHHHHHhCCCC-CCEEEEeCCH-H
Q 011669 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTV-LY--LNHAIADFAEALASKMPGN-LKVVFFTNSG-T 168 (480)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~-~~--~~~~~~~l~e~L~~~~~~~-~~~v~f~~sG-s 168 (480)
+++++..|.. ..+|.|.+|+.+.+.+.. +... .+ ..+...+++++++++++.. .++|+|++|+ +
T Consensus 3 ~~~~~~~g~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt 77 (360)
T 1w23_A 3 QVFNFNAGPS-----ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSC-----CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeecCCCc-----CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence 3455555532 367999999998775420 0000 01 1234678999999998764 3589999988 9
Q ss_pred HHHHHHHHHHHhhcCCc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH-H
Q 011669 169 EANELAIMMARLYTGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-L 246 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~ 246 (480)
+|++.++.......++. .|+....+|+. ... ... .| ..+.+|......+ .| .+++++ .
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~-~~~------------~g-~~~~v~~~~~~~~-~d----~~~l~~~~ 137 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKE-AKL------------LG-ETHIAASTKANSY-QS----IPDFSEFQ 137 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHH-HHH-HHT------------TS-EEEEEEECGGGTS-CS----CCCGGGCC
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHH-HHH-HHH------------hC-CeEEeecccccCc-CC----ccchHhhc
Confidence 99999987654321112 33332222221 111 111 12 2211111100001 11 234544 4
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecc
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAK 324 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK 324 (480)
++ +++++|++.++++++|.+.+ +++++||+++|+||+|+.+... .....+ |++ +++|
T Consensus 138 i~----~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK 196 (360)
T 1w23_A 138 LN----ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQK 196 (360)
T ss_dssp CC----TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTT
T ss_pred cC----CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEccc
Confidence 42 36888998888999998753 2233899999999999854321 112222 565 4669
Q ss_pred ccccCccccccccCHHHHHhhcCCC-----------ccccC-CCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHH
Q 011669 325 GIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLK 388 (480)
Q Consensus 325 ~~g~G~pig~v~~~~~~~~~l~~~~-----------~~~t~-~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~ 388 (480)
.++. -++||+++++++++.+.... ...++ +.+..+++++.++|+.+.++ .+.++.+++.+++.
T Consensus 197 ~~~~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~ 275 (360)
T 1w23_A 197 NLGP-SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIY 275 (360)
T ss_dssp TTSC-TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccCC-CCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9973 24899999999887665432 11222 34566677777888776543 34555666666666
Q ss_pred HHHHHhHHhcC-ceeeE--e-cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCH
Q 011669 389 ERLTALKDKYG-IIGDV--R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTK 463 (480)
Q Consensus 389 ~~L~~l~~~~~-~~~~v--~-g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~ 463 (480)
+.|+++ + ..... . .. +.++++.+. .......+.+.|.++||.+.++..+.+++||+++...++
T Consensus 276 ~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~ 343 (360)
T 1w23_A 276 DTIDES----NGFYVGHAEKGSRSLMNVTFNLR--------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPI 343 (360)
T ss_dssp HHHHTT----TTSSEESSCGGGBCSSEEEEECS--------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHHc----cCcccccCCchhccCcEEEEEcC--------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCH
Confidence 666553 3 21211 1 12 447777762 223356688889999999988755567899999888899
Q ss_pred HHHHHHHHHHHHHHhh
Q 011669 464 EDADYLVDVMDYSLSK 479 (480)
Q Consensus 464 ~~id~~l~~l~~~l~~ 479 (480)
+++++++++|++++++
T Consensus 344 ~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 344 DACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998865
No 205
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.84 E-value=1.3e-18 Score=181.95 Aligned_cols=313 Identities=12% Similarity=-0.005 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhh-------cC----Cc-eEEEEcCCcccccccccccccCC
Q 011669 143 IADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-------TG----CN-DIISLRNAYHGNAAGTMGATAQS 208 (480)
Q Consensus 143 ~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~-------~~----~~-~ii~~~~~yhG~~~~~~~~~~~~ 208 (480)
..+++++++++++.+ .+.++|++||||||..|++.++.. .| .+ .|++.+.+|+. ...+....+.+
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s-~~~~~~~~g~g 212 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS-IKKAGAALGFG 212 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH-HHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH-HHHHHHHcCCC
Confidence 345667778888655 568999999999999999998753 23 13 45555555443 33222222210
Q ss_pred CccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669 209 NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286 (480)
Q Consensus 209 ~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~ 286 (480)
. ..+..++... .+.-| .++|++.|+.. ...++++|++...++++|.+.+ +++|.++|++
T Consensus 213 ~-------~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~ 273 (504)
T 2okj_A 213 T-------DNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK 273 (504)
T ss_dssp G-------GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHH
T ss_pred c-------ccEEEEecCC----CCCCC----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence 0 0123333221 12223 57787777531 1125788888888888898866 9999999999
Q ss_pred hCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCH-HHHHh-hcC---CCc-ccc----
Q 011669 287 AGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEV-LTR---RNY-FNT---- 353 (480)
Q Consensus 287 ~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~-~~~~~-l~~---~~~-~~t---- 353 (480)
||+++++|++|.++.... .-+.....++ .+|+++++ |.+++++++|++++++ +++.. +.. ... ...
T Consensus 274 ~g~~lhvD~a~~~~~~~~-~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (504)
T 2okj_A 274 YNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV 352 (504)
T ss_dssp HTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCG
T ss_pred cCCEEEEehhhhhHHHhC-HhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccC
Confidence 999999999999775432 1111222344 57888775 9998778999999886 46543 211 110 011
Q ss_pred ------C------CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEEEEEecC
Q 011669 354 ------F------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTD 418 (480)
Q Consensus 354 ------~------~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~ 418 (480)
+ ..+.+.+.++++++..-.-++..++..++.+++.+.|+++ +.+..+ .....++.+.+...
T Consensus 353 ~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~ 428 (504)
T 2okj_A 353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ 428 (504)
T ss_dssp GGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred cCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence 0 1135566555555542111234556666666776666553 222222 13344444544321
Q ss_pred CC-cCCCCH-------HHHHHHHHHHHHcCceeec-cCcCC--CEEEEeCC-CCCCHHHHHHHHHHHHHHHhhC
Q 011669 419 RQ-LKTPAK-------AETLYIMDKMKEMGVLVGK-GGFYG--NVFRITPP-LCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 419 ~~-~~~~~~-------~~~~~~~~~l~~~Gv~v~~-~~~~~--~~iRi~p~-~~~t~~~id~~l~~l~~~l~~~ 480 (480)
.. ...... .....+.+.|.++|+++.. ....+ +++||++. ..+|++||++++++|+++++++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 10 000000 0135678888999965432 22212 58999985 7789999999999999987653
No 206
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.84 E-value=1.9e-19 Score=179.82 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=198.2
Q ss_pred CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-------cccccC--ChHHHHHHHHHHHhCCCCCC-E-EEEeCC
Q 011669 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-------STVLYL--NHAIADFAEALASKMPGNLK-V-VFFTNS 166 (480)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-------~~~~~~--~~~~~~l~e~L~~~~~~~~~-~-v~f~~s 166 (480)
++.|+|..+. ...+|+|.+|+.+.+.+... ....+. .+...+++++++++++.+.+ + +++++|
T Consensus 3 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g 76 (362)
T 2c0r_A 3 ERAYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG 76 (362)
T ss_dssp CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred cceeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 4556664432 14689999999987754210 011111 23467899999999876543 5 577899
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCcccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCC--CChHHHHHHH
Q 011669 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG--ADGEMYAKDV 243 (480)
Q Consensus 167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~--~d~~~~~~~l 243 (480)
|++|+..+++... .++++|++.++++++... ......+ . +..++.+. ...++ .| .+++
T Consensus 77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-~----------~~~v~~~~--~~~~~~~~~----~~~~ 137 (362)
T 2c0r_A 77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-D----------THVAASSE--ASNYMTLPK----LQEI 137 (362)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-C----------EEEEEECG--GGTTCSCCC----GGGC
T ss_pred chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-C----------eEEEeccc--ccccccCCC----HHHc
Confidence 9999999998654 356788888777665321 1111111 1 11222110 00011 12 1122
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--e
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--T 321 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t 321 (480)
+ + .+++++|++.+.++++|.+..+ +++| ||+++|+||+|. +|.. ..... +. |++ +
T Consensus 138 ~--i----~~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~--~~--d~~~~s 194 (362)
T 2c0r_A 138 Q--L----QDNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLN--QF--GLVYAG 194 (362)
T ss_dssp C--C----CTTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGG--GC--SEEEEE
T ss_pred c--c----CCCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchh--HC--cEEEEe
Confidence 1 2 2368888888778888986322 4443 899999999997 3321 11122 22 555 6
Q ss_pred eccccc-cCccccccccCHHHHHhhcCCC------------ccccCCCcHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Q 011669 322 MAKGIG-NGIPLGAVVTTPEIAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVG 384 (480)
Q Consensus 322 ~sK~~g-~G~pig~v~~~~~~~~~l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~----~~~~~~~~~~~ 384 (480)
++|.+| .| +||+++++++++.+.... ....++.|+.+++++.++|+.+.+ +...++.+++.
T Consensus 195 ~~K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 272 (362)
T 2c0r_A 195 AQKNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKA 272 (362)
T ss_dssp TTTTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 789997 35 899999998876665321 012346677888888899987654 34556666666
Q ss_pred HHHHHHHHHhHHhc-CceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669 385 SYLKERLTALKDKY-GIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462 (480)
Q Consensus 385 ~~l~~~L~~l~~~~-~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 462 (480)
+++++.|+++. .+ ...... ...+.++++.+ +.......+.+.|.++||.+.++..+.+.+||++...++
T Consensus 273 ~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~ 343 (362)
T 2c0r_A 273 SLIYDAIDQSG-GFYRGCVDVDSRSDMNITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVP 343 (362)
T ss_dssp HHHHHHHHTST-TSSEESSCGGGBCSSEEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSC
T ss_pred HHHHHHHHHcC-CccccCCChHHcCCcEEEEEc--------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCC
Confidence 66666665541 01 111100 11234455554 222345678888999999887765445679999887789
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011669 463 KEDADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~ 479 (480)
++|+++++++|++++++
T Consensus 344 ~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 344 YESCEALVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 207
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.83 E-value=2e-18 Score=181.00 Aligned_cols=315 Identities=14% Similarity=0.094 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-------cC-----CceEEEEcCCcccccccccccccCCC
Q 011669 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-------TG-----CNDIISLRNAYHGNAAGTMGATAQSN 209 (480)
Q Consensus 142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~-------~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~ 209 (480)
...+++++|+++++.+.+.++|++||||||..|++.+|.+ .| +..|++.+.. |.....+....+.+.
T Consensus 149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence 3466778899998766678999999999999999998743 12 1155555554 444443333322110
Q ss_pred ccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (480)
Q Consensus 210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~ 287 (480)
..+..++... .+..| .++|++.++.. ...++++|++...++++|.+.+ +++|.++|++|
T Consensus 228 -------~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~ 288 (515)
T 2jis_A 228 -------DSVRVVKADE----RGKMV----PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH 288 (515)
T ss_dssp -------GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred -------CcEEEEecCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence 0233333221 11123 56787777531 1225889999988888998876 99999999999
Q ss_pred CCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccCHH--HHHhh-c---CCC-c-------
Q 011669 288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE--IAEVL-T---RRN-Y------- 350 (480)
Q Consensus 288 gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~--~~~~l-~---~~~-~------- 350 (480)
|+++|+|++|+++.... ..+.....++ .+|++++ +|.+++++++|+++++++ +++.. . ... .
T Consensus 289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999876544 2222223355 6788877 799987788999998866 65531 1 111 0
Q ss_pred ---cccC------CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc
Q 011669 351 ---FNTF------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL 421 (480)
Q Consensus 351 ---~~t~------~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~ 421 (480)
..++ ....+.+.++++++....-+++.++..++.+++.+.|+++. .+..+.. .....+.+.+......
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~~--~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVME--PEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESSC--CSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCC--CCeeEEEEEEeCcccc
Confidence 0111 01134444444444321123456666777777777776641 1111111 1223334433221000
Q ss_pred C--CCCH--HH----HHHHHHHHHHcCceeec-c--CcCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhhC
Q 011669 422 K--TPAK--AE----TLYIMDKMKEMGVLVGK-G--GFYGNVFRITP-PLCFTKEDADYLVDVMDYSLSKM 480 (480)
Q Consensus 422 ~--~~~~--~~----~~~~~~~l~~~Gv~v~~-~--~~~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~~ 480 (480)
. .+.. .. ...+.+.|.+.|+++.. . ....+++||++ +..+|++||++++++|+++++++
T Consensus 445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0 0111 11 12367788889976532 1 11135899999 78899999999999999988764
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.83 E-value=3e-18 Score=176.60 Aligned_cols=327 Identities=16% Similarity=0.038 Sum_probs=194.3
Q ss_pred CCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCC-----EEEEeCCHHHHHHHHHHHHHhh-------
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLK-----VVFFTNSGTEANELAIMMARLY------- 181 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~-----~v~f~~sGseA~~~Alk~ar~~------- 181 (480)
.+|.+.+++.+.+.........++ .....+++++++++++.+.+ .+++++||||||..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999887754321111121 23356777888888876544 4899999999999999887641
Q ss_pred cC----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669 182 TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (480)
Q Consensus 182 ~~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~ 257 (480)
.| ++.||+.+ .|.....+.... |+..+.+|... ..|..| .++|++.|+ +++++
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~----~~t~~ 190 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACD----ENTIG 190 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCC----TTEEE
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHh----hCCEE
Confidence 23 34677655 554433333222 33333333211 122234 678888875 25778
Q ss_pred EEEcccCCCCcceeCCCChHHHHHHHHHHh------CCEEEEcccccCccc---cCCCcccccccCCCcceeeec--ccc
Q 011669 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGI 326 (480)
Q Consensus 258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~tgfgr---~G~~~~~~~~~~~~pDivt~s--K~~ 326 (480)
|++...++++|.+.+ +++|.++|++| |+++++|++|.++.. .+...+.+.. ...|+++++ |.+
T Consensus 191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~ 264 (452)
T 2dgk_A 191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG 264 (452)
T ss_dssp EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence 888877778888876 99999999996 999999999987632 1210111111 135666654 966
Q ss_pred ccCccccccccCHH-HH-HhhcCCC-c-cc---c--C--CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHH
Q 011669 327 GNGIPLGAVVTTPE-IA-EVLTRRN-Y-FN---T--F--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLT 392 (480)
Q Consensus 327 g~G~pig~v~~~~~-~~-~~l~~~~-~-~~---t--~--~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~ 392 (480)
.+|+++|+++++++ ++ +.+.... + +. + . +.+.....+..++++.+..+ +..++..++.+++.+.|+
T Consensus 265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~ 344 (452)
T 2dgk_A 265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA 344 (452)
T ss_dssp CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999653 33 3332110 0 00 1 1 11111223333444444333 344555555666666655
Q ss_pred HhHHhcCceeeE-e----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc----Cc-CCCEEEEeCCCCCC
Q 011669 393 ALKDKYGIIGDV-R----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG----GF-YGNVFRITPPLCFT 462 (480)
Q Consensus 393 ~l~~~~~~~~~v-~----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~-~~~~iRi~p~~~~t 462 (480)
++ +.+..+ . ....++.+.+...... ......+.+.|.++|+.+... .. ...++||+.....|
T Consensus 345 ~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t 416 (452)
T 2dgk_A 345 KL----GPYEFICTGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 416 (452)
T ss_dssp TT----SSEEEEEECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred hC----CCeEEecCCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence 43 323222 2 2445666665321100 011356888999999976432 11 13589999888889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011669 463 KEDADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~ 479 (480)
++|+|.+++.|++++++
T Consensus 417 ~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 417 MDFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988753
No 209
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.83 E-value=6e-19 Score=182.13 Aligned_cols=299 Identities=15% Similarity=0.021 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHH-HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669 142 AIADFAEALASKMPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH 220 (480)
Q Consensus 142 ~~~~l~e~L~~~~~~~~~~v~f~~sGs-eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~ 220 (480)
...+++++++++++.+.+ ++|++||| .+|..++..++...+++.||+.++.|+. ........ |+.
T Consensus 134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~------------G~~ 199 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFV------------GMN 199 (456)
T ss_dssp HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHT------------TCE
T ss_pred HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHc------------CCC
Confidence 446788999999976555 99999999 5677677776653355567777775544 33222222 222
Q ss_pred EecCCCCc-CCCCCCChHHHHHHHHHHH-HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669 221 HALNPDPY-RGVFGADGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298 (480)
Q Consensus 221 ~~~~p~~~-~~~~~~d~~~~~~~le~~i-~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t 298 (480)
...++... ...+..| .++|++++ +.....++.+|++...++++|.+.+ +++|.++|++||+++|+||+|.
T Consensus 200 ~~~v~~~~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~ 271 (456)
T 2z67_A 200 MRLVETVLDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYA 271 (456)
T ss_dssp EEEECCEEETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTT
T ss_pred ceEEEEeccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcch
Confidence 22221100 0111123 67888888 4211125666766666677888876 9999999999999999999987
Q ss_pred CccccCCCcccccc-cCCCcceeee--ccccccCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-
Q 011669 299 GFARTGSHFWGFEA-HGVVPDIVTM--AKGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK- 373 (480)
Q Consensus 299 gfgr~G~~~~~~~~-~~~~pDivt~--sK~~g~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~- 373 (480)
++.. |........ .+ .+|++++ +|.+++++++|++++ ++++++.+.+...+. ..+++ ..++.+++..+..
T Consensus 272 ~~~~-g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~-~~~~~--~~~~~aal~~l~~~ 346 (456)
T 2z67_A 272 IQNN-YYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR-ASATP--VVNTLVSLLSMGSK 346 (456)
T ss_dssp TTCH-HHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC-BCSHH--HHHHHHHHHHHHHH
T ss_pred HHHH-HhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC-CCCCH--HHHHHHHHHHHHHH
Confidence 6532 100000111 12 5777765 698778899999999 577877765432222 22232 2333344443333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc---eee----
Q 011669 374 --DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV---LVG---- 444 (480)
Q Consensus 374 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~---- 444 (480)
++..++..++.+++++.|+++....+. ...... .++++.+..+. . ...+.+.|.++|+ -+.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi~~~rv~~~~g 416 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLSKKTGG-KFLDVE-SPIASCISVNS----D----PVEIAAKLYNLRVTGPRGIKKTD 416 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CBCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTEESCEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCC-EecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCCCcceEEeecC
Confidence 345677788888888888876422221 111222 44455552111 0 3457888888885 232
Q ss_pred --cc----CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 445 --KG----GFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 445 --~~----~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
.| ....+++|+++++.+|++|||+++++|++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 01 1113689999998899999999999998765
No 210
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.82 E-value=1.7e-20 Score=193.07 Aligned_cols=287 Identities=10% Similarity=0.006 Sum_probs=181.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (480)
Q Consensus 139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g 218 (480)
+.....++++++++ ++.+ +.++|+||||+||..+++.+. .++++|++.+++|++............
T Consensus 55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~G~~~---------- 120 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDISQQEG---------- 120 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHHTCCE----------
T ss_pred cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHcCCeE----------
Confidence 34567788888888 8654 678999999999999999764 367889999999887766544332211
Q ss_pred eeEecC--CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669 219 VHHALN--PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296 (480)
Q Consensus 219 ~~~~~~--p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv 296 (480)
..++. ...+...+..| .+++ + ..++++|++++ ++.+|.+.+ +++|.++|++||+++|+||+
T Consensus 121 -~~v~~~~~~~~~~~~~~d----~~~l---~----~~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea 183 (446)
T 2x3l_A 121 -HFIETHQSPLTNHYNKVN----LSRL---N----NDGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA 183 (446)
T ss_dssp -EECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred -EEEeCeeccccCcCCCCC----HHHH---c----CCCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence 11111 00000001111 1233 2 13567777777 555887766 99999999999999999999
Q ss_pred ccC-ccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHH--hhcCC-CccccCCCcHHHHHHHHHHHHH
Q 011669 297 QAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAE--VLTRR-NYFNTFGGNPVCTAAGHAVLKV 370 (480)
Q Consensus 297 ~tg-fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~--~l~~~-~~~~t~~~~~~~~aaa~a~L~~ 370 (480)
|++ +...+ ..+.... ..+|+++.| |.++++.++|++++++++++ .+... ....+.+.+...+++..++++.
T Consensus 184 ~~~~~~f~~-~~~~~~~--~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 184 HGAHFGLQG-FPDSTLN--YQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TCTTTTSTT-SCCCGGG--GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred hhhhhccCC-CCCChHH--cCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 986 32333 2222222 236777655 99887778899999877643 22211 1223444566666666666766
Q ss_pred hhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669 371 IQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447 (480)
Q Consensus 371 i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 447 (480)
+++. ++.++.+++.+++++. .+..+. ...+..+++.+. . .....+.+.|.++||.+...+
T Consensus 261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~--~-------~~~~~l~~~L~~~GI~v~~~g 323 (446)
T 2x3l_A 261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE--G-------FTGHDIQNWFMNAHIYLELAD 323 (446)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT--T-------SCHHHHHHHHHHTTEEESEEC
T ss_pred HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC--C-------cCHHHHHHHHHHCCCEEEecC
Confidence 6542 2666676666666655 121111 112345566552 1 114568888989999997333
Q ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 448 FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++|++++...|++++ +++++|++++++
T Consensus 324 --~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 324 --DYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp --SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred --CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 36899999988899999 999999998764
No 211
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.82 E-value=4.6e-19 Score=179.56 Aligned_cols=310 Identities=9% Similarity=-0.020 Sum_probs=188.7
Q ss_pred CCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCC-CCEEEE-eCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGCNDIISLR 191 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~-~~~v~f-~~sGseA~~~Alk~ar~~~~~~~ii~~~ 191 (480)
.+|+|.+|+.+...........++ .+...+++++++++++.+ .++|+| ++||++|++.+++.+.. ++ ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--~g--v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--KR--SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--SC--EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--CC--eEEEe
Confidence 578999998763111101011121 234678999999999765 357888 99999999999987632 22 33336
Q ss_pred CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (480)
Q Consensus 192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~ 271 (480)
.++|+.......... .+ ...+..++.++. +..+ .+ + ..++++|++...++++|.+.
T Consensus 127 ~~~~~~~~~~~~~~~--~~-----g~~~~~v~~~~g----~~~~-----~~----i----~~~~~~v~~~~~~nptG~~~ 182 (398)
T 2fyf_A 127 YGEFSAKFASAVSKN--PF-----VGEPIIITSDPG----SAPE-----PQ----T----DPSVDVIAWAHNETSTGVAV 182 (398)
T ss_dssp CSHHHHHHHHHHHHC--TT-----SCCCEEEECCTT----CCCC-----CC----C----CTTCSEEEEESEETTTTEEC
T ss_pred CCHHHHHHHHHHHHh--CC-----CCceEEEecCCC----CCCC-----cc----c----cCCCCEEEEeCcCCCcceec
Confidence 677764322111100 00 001222332211 1111 00 2 23677888888888899887
Q ss_pred CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcCC-
Q 011669 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRR- 348 (480)
Q Consensus 272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~~- 348 (480)
+ .+.+ .++ +|+++|+||+|+.+... ...+ .+|+++ ++|.++.+-++|++++++++++.+...
T Consensus 183 ~-~~~i---~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 183 A-VRRP---EGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp C-CCCC---TTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred c-hHHh---hhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence 5 3333 333 89999999999854321 1111 257765 569999654589999999988766210
Q ss_pred ---------C----------cccc-CCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669 349 ---------N----------YFNT-FGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (480)
Q Consensus 349 ---------~----------~~~t-~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v 404 (480)
. ...+ ++.|..+++++.++|+.+.++ +..++.+++.+++.+.|+++ +.+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 323 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF 323 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence 0 0122 345566777778888866543 34556666666666666654 222211
Q ss_pred ---e-ccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 405 ---R-GRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 405 ---~-g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
. +.+ .++++.+... .....+.+.|.++||.+.++.. .++++||++...+|++|+++++++|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 324 VTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp CCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1 123 3778877321 1146788889999999987521 24789999988889999999999999998
Q ss_pred hhC
Q 011669 478 SKM 480 (480)
Q Consensus 478 ~~~ 480 (480)
+++
T Consensus 396 ~~~ 398 (398)
T 2fyf_A 396 ERL 398 (398)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
No 212
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.82 E-value=5.7e-19 Score=179.71 Aligned_cols=298 Identities=13% Similarity=0.057 Sum_probs=185.3
Q ss_pred cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (480)
Q Consensus 132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 211 (480)
.|....+.++...+++++|+++++. +.+++++||++|+..+++... .++++||+..+.|++.........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l------ 142 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKIL------ 142 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTG------
T ss_pred CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHH------
Confidence 4555677889999999999999864 456778999999999998543 256889999999987442221110
Q ss_pred ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH--hCC
Q 011669 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGG 289 (480)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gi 289 (480)
...|+....++. +| .++++++++ +++++|++|.++|++|.+.+ +++|.++|++ ||+
T Consensus 143 ---~~~G~~v~~v~~-------~d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~ 200 (415)
T 2fq6_A 143 ---SKLGVTTSWFDP-------LI----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA 200 (415)
T ss_dssp ---GGGTCEEEEECT-------TC----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred ---HHcCcEEEEECC-------CC----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence 001333322221 12 356666664 36899999999999999886 9999999999 999
Q ss_pred EEEEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (480)
Q Consensus 290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~ 365 (480)
++|+||+|... ... .. . +...|++ +++|.+++ | ...|++++++++++.+...........+|..+.+++
T Consensus 201 ~livD~a~a~~-~~~-~p--~---~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~ 273 (415)
T 2fq6_A 201 IIMIDNTWAAG-VLF-KA--L---DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS 273 (415)
T ss_dssp EEEEECTTTTT-TSS-CG--G---GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EEEEECCCccc-ccC-Cc--c---ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999632 112 11 1 2235766 67899995 4 346899998887776654221111233566666565
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhH--Hh--cCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALK--DK--YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLY 431 (480)
Q Consensus 366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~--~~--~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~ 431 (480)
..++.+. ...++..++...+.+.|++.. .+ ++.+. ..++.|.+++|.+.... .......
T Consensus 274 ~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~ 346 (415)
T 2fq6_A 274 RGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELAN 346 (415)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHH
T ss_pred hhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHH
Confidence 5665432 223334445555555555431 00 11110 01246778888883210 0123444
Q ss_pred HHHHHHHcCceeecc-----------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669 432 IMDKMKEMGVLVGKG-----------------------GFYGNVFRITPPLCFTKEDADYLVDVMDY 475 (480)
Q Consensus 432 ~~~~l~~~Gv~v~~~-----------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~ 475 (480)
+.+.|.-.++.+..| +..++.|||++.+..++++|+.+.++|++
T Consensus 347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 544443223222211 11247899999999999999888888864
No 213
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.81 E-value=4.8e-20 Score=188.70 Aligned_cols=323 Identities=13% Similarity=0.002 Sum_probs=194.5
Q ss_pred CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh-ccccccccCCh--H---HHHHHHHHHHhCC------CCCCEEEEe
Q 011669 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNH--A---IADFAEALASKMP------GNLKVVFFT 164 (480)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-~~~~~~~~~~~--~---~~~l~e~L~~~~~------~~~~~v~f~ 164 (480)
..+..+||..|.... + .++.+.+++.+.+.. ..+. ..|... . ..+|++.|++++. .+.++|++|
T Consensus 54 ~~~~~i~l~~g~~~~--~-~~~~v~~a~~~~l~~~~~~~-~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t 129 (427)
T 2hox_A 54 IQGCSADVASGDGLF--L-EEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG 129 (427)
T ss_dssp CTTCCEECCSCCCGG--G-HHHHTTSHHHHCEEECTTTT-CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred CCCceEEecCcCCCC--C-CCHHHHHhHHhhhhcCCccc-ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEe
Confidence 345678887776643 2 345677777765532 1111 113222 2 4666666666652 346789999
Q ss_pred CCHHHHHHHHHHHHHh------hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHH
Q 011669 165 NSGTEANELAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238 (480)
Q Consensus 165 ~sGseA~~~Alk~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~ 238 (480)
+|+++|+..+++.... ..+++.|++.+++|.++.......... .. + |..|
T Consensus 130 ~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~-~~-------~-------------~~~d--- 185 (427)
T 2hox_A 130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK-GY-------V-------------WAGN--- 185 (427)
T ss_dssp SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT-TE-------E-------------EEEE---
T ss_pred CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCe-ee-------e-------------ecCC---
Confidence 9999999999987610 235688999999998766554433221 10 0 0011
Q ss_pred HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc
Q 011669 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318 (480)
Q Consensus 239 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD 318 (480)
.++|++.++ .++++|++...+|++|.+.. +.+ + ++..|.||.+-+ ......... .+...-
T Consensus 186 -~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~---~~~s~~~~~-~~~~i~ 245 (427)
T 2hox_A 186 -AANYVNVSN----PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW---PHYTPIKYK-ADEDIL 245 (427)
T ss_dssp -GGGGTTCSC----GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS---TTTSCCCSC-BCCSEE
T ss_pred -HHHHHHhhc----CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC---CCCCccccC-CCceEE
Confidence 234544443 24566666666777887764 433 2 566788887632 110111121 233333
Q ss_pred eeeeccccc-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHH
Q 011669 319 IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---------DKLQNNAHVVGSYL 387 (480)
Q Consensus 319 ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---------~~~~~~~~~~~~~l 387 (480)
+.+|||.+| .|+|+||++++ +++++.+.......+++.+++++.++.++|+...+ +++.++.++..+..
T Consensus 246 ~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 2hox_A 246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325 (427)
T ss_dssp EEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred EEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHH
Confidence 447899998 79999999994 89988887654445677889999888888875321 12222222222223
Q ss_pred HHHHHHhHHhcCcee---------------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--
Q 011669 388 KERLTALKDKYGIIG---------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY-- 449 (480)
Q Consensus 388 ~~~L~~l~~~~~~~~---------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~-- 449 (480)
++.|.+..++++.+. .....|+++|+++..+ ...+++.| .++||.+.+|..+
T Consensus 326 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~ 395 (427)
T 2hox_A 326 WVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEA 395 (427)
T ss_dssp HHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTS
T ss_pred HHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCC
Confidence 333333333332221 1222377888888421 12355555 4789999997544
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 -GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 -~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+++||++. .+++++++++++|.+++++
T Consensus 396 ~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 396 SSRYVRLSLI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp CTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 468999954 5899999999999998864
No 214
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.81 E-value=1.3e-18 Score=177.67 Aligned_cols=290 Identities=15% Similarity=0.079 Sum_probs=177.3
Q ss_pred ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 212 (480)
+....+.++...+|+++|+++++. +.+++++||++|+..+++.+. .+++.||+.++.|++.........
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al~--~~Gd~Vi~~~~~y~~~~~~~~~~~------- 142 (430)
T 3ri6_A 74 HVYSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTLA--RAGDSVVTTDRLFGHTLSLFQKTL------- 142 (430)
T ss_dssp ------CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHTHH-------
T ss_pred ccccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHHH-------
Confidence 344567789999999999999864 457888999999999998763 367899999999987554221010
Q ss_pred cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
...|+....++. +| .++++++++ +++++|++|+++|++|.+.+ +++|.++|++||+++|
T Consensus 143 --~~~G~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~li 201 (430)
T 3ri6_A 143 --PSFGIEVRFVDV-------MD----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLV 201 (430)
T ss_dssp --HHTTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred --HHcCCEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEE
Confidence 001333333322 12 577887774 37899999999999998876 9999999999999999
Q ss_pred EcccccCccccCCCcccccccCCCcceeeecccccc-Ccccccccc---CHHH------------------HHhhcCC-C
Q 011669 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVVT---TPEI------------------AEVLTRR-N 349 (480)
Q Consensus 293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pig~v~~---~~~~------------------~~~l~~~-~ 349 (480)
+||+|+. + .++....+|....+.+++|.+++ |..+|.++. +..+ ++.+... .
T Consensus 202 vD~a~~~----~-~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~ 276 (430)
T 3ri6_A 202 VDTTMTP----P-YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVF 276 (430)
T ss_dssp EECTTSC----T-TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHH
T ss_pred EECCCcc----c-ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHH
Confidence 9999962 2 12222334554455578899986 555554443 2111 1111110 0
Q ss_pred ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-----------------ccce-eE
Q 011669 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----------------GRGF-LL 411 (480)
Q Consensus 350 ~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-----------------g~g~-~~ 411 (480)
.......+|+.+..++..++.+. ...++..++..++.+.|+ ++|.+..+. |.|. ++
T Consensus 277 ~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l 350 (430)
T 3ri6_A 277 QNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL 350 (430)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred HhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 01112235666666665555432 223344444445554443 445554443 3466 99
Q ss_pred EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHH
Q 011669 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDA 466 (480)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~i 466 (480)
+|++. ......++.+.|+-.++.+..|+ ...+.|||+.. -|++
T Consensus 351 sf~l~--------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~ 418 (430)
T 3ri6_A 351 TFELE--------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEI 418 (430)
T ss_dssp EEECS--------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCH
T ss_pred EEEEC--------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCH
Confidence 99983 22345666666655554444332 23468999854 4566
Q ss_pred HHHHHHHHHHH
Q 011669 467 DYLVDVMDYSL 477 (480)
Q Consensus 467 d~~l~~l~~~l 477 (480)
+.+++.|+++|
T Consensus 419 ~dl~~dl~~al 429 (430)
T 3ri6_A 419 EDLKEDILQAL 429 (430)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777777766
No 215
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.80 E-value=1.9e-18 Score=179.54 Aligned_cols=336 Identities=13% Similarity=0.086 Sum_probs=195.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHhcc---cccc-ccC-ChH----HHHHHHHHHHhCCCCCC---EEEEeCCHH
Q 011669 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTV-LYL-NHA----IADFAEALASKMPGNLK---VVFFTNSGT 168 (480)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~-~~~-~~~----~~~l~e~L~~~~~~~~~---~v~f~~sGs 168 (480)
.|.+.++.. ..+|.|.+|+.+.+.... +... .|. .+. ...++++++++++.+.+ ..++.+||+
T Consensus 46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs 120 (483)
T 1rv3_A 46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120 (483)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence 355555432 457999999988776421 1111 111 222 34555888999876543 224566777
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC--eeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDL 246 (480)
Q Consensus 169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (480)
+||.++++... .++++|++.+..|.|......... +......| +..++++... ..+..| .++|+++
T Consensus 121 ~an~~~~~all--~pGD~Vl~~~~~~~~~~~~~~~~~-----~~~v~~~G~~~~~v~~~~~~-~~~~iD----~d~le~~ 188 (483)
T 1rv3_A 121 PANFAVYTALV--EPHGRIMGLDLPDGGHLTHGFMTD-----KKKISATSIFFESMAYKVNP-DTGYID----YDRLEEN 188 (483)
T ss_dssp HHHHHHHHHHT--CTTCEEEEECGGGTCCGGGCCBCS-----SCBCSHHHHHSEEEEECBCT-TTCSBC----HHHHHHH
T ss_pred HHHHHHHHHhc--CCCCEEEEecCccCcCcchhhhhc-----ccCcccccceEEEEECcccc-CCCcCC----HHHHHHH
Confidence 99998887653 377899999888765432211110 00000011 2333332110 112234 6788888
Q ss_pred HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--ec
Q 011669 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MA 323 (480)
Q Consensus 247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~s 323 (480)
++. .++++|++ ...+.+ .+.+ +++|+++|++||+++|+||+|. |+...|...+.+. ..|+++ ++
T Consensus 189 i~~---~~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~ 255 (483)
T 1rv3_A 189 ARL---FHPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTH 255 (483)
T ss_dssp HHH---HCCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESS
T ss_pred Hhh---cCCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCc
Confidence 863 25678888 555544 4444 9999999999999999999986 3322231111111 357765 56
Q ss_pred cccccCccccccccCHH---------------HHHhhcCCCccccCC-CcHHHHHHHHHHHHHhhh---hHHHHHHHHHH
Q 011669 324 KGIGNGIPLGAVVTTPE---------------IAEVLTRRNYFNTFG-GNPVCTAAGHAVLKVIQK---DKLQNNAHVVG 384 (480)
Q Consensus 324 K~~g~G~pig~v~~~~~---------------~~~~l~~~~~~~t~~-~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~ 384 (480)
|++ +|+|.|+++++++ +.+.+.........+ .+...+++..++++.+.+ +++.+++.++.
T Consensus 256 K~l-~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~ 334 (483)
T 1rv3_A 256 KTL-RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC 334 (483)
T ss_dssp GGG-CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred ccC-CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 998 4668899998874 333232111111122 234444555566766543 34566677777
Q ss_pred HHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccC---cCCCEEEEe
Q 011669 385 SYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGG---FYGNVFRIT 456 (480)
Q Consensus 385 ~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~---~~~~~iRi~ 456 (480)
+++.+.|.++ .+..+. .+. ..+.++++.... .....+.+.|.+.||.+. |+. ...+.+||+
T Consensus 335 ~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis 403 (483)
T 1rv3_A 335 RALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 403 (483)
T ss_dssp HHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEE
T ss_pred HHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEee
Confidence 7777777664 222111 111 235566653211 013456777888999998 653 124689999
Q ss_pred CCCCCC----HHHHHHHHHHHHHHHh
Q 011669 457 PPLCFT----KEDADYLVDVMDYSLS 478 (480)
Q Consensus 457 p~~~~t----~~~id~~l~~l~~~l~ 478 (480)
++..+| ++|+++++++|+++++
T Consensus 404 ~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 404 TPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 886666 9999999999998875
No 216
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.79 E-value=3.2e-17 Score=171.09 Aligned_cols=327 Identities=16% Similarity=0.071 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCC--CC---EEEEeCCHHHHHHHHHHHHHhhc-----
Q 011669 115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LK---VVFFTNSGTEANELAIMMARLYT----- 182 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~--~~---~v~f~~sGseA~~~Alk~ar~~~----- 182 (480)
..+|.+.+++.+.+.........++ .....+++++|+++++.+ .+ ...+++||+|||..++..++...
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 4579999999887765322111111 233446777888888654 22 33569999999999998775420
Q ss_pred --C----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 183 --G----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 183 --~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
| +..|++.+++|..+...+ ...+. .+..++... ..+.-| .++++++++ ++++
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s~~~~~-~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~t~ 204 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFA-RYFEV----------ELKEVKLSE---GYYVMD----PQQAVDMVD----ENTI 204 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHH-HHTTC----------EEEEECCBT---TBCSCC----HHHHHHHCC----TTEE
T ss_pred hcCCCCCCcEEEEcCCchHHHHHHH-HHcCc----------eeEEEecCC---CcCcCC----HHHHHHHHh----hCCE
Confidence 2 126777776654433222 22111 122233211 012223 677887775 3577
Q ss_pred EEEEcccCCCCcceeCCCChHHHHHHHHHHh------CCEEEEcccccCccc---cCCCcccccccCCCcceeee--ccc
Q 011669 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTM--AKG 325 (480)
Q Consensus 257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~tgfgr---~G~~~~~~~~~~~~pDivt~--sK~ 325 (480)
+|++...++++|.+.+ +++|.++|+++ |+++++|++|.++.. .+...+.+.. ...|++++ .|.
T Consensus 205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~ 278 (502)
T 3hbx_A 205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY 278 (502)
T ss_dssp EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence 7877777777888876 99999999999 999999999987631 2211111111 13566644 487
Q ss_pred cccCccccccccC-HHHH-HhhcCC-Cc-c-----cc--CCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669 326 IGNGIPLGAVVTT-PEIA-EVLTRR-NY-F-----NT--FGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL 391 (480)
Q Consensus 326 ~g~G~pig~v~~~-~~~~-~~l~~~-~~-~-----~t--~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L 391 (480)
+.++.++|+++.+ ++.+ +.+... .+ + .+ ++.+....++..++|+.+..+ ...++..++.+++.+.|
T Consensus 279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L 358 (502)
T 3hbx_A 279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL 358 (502)
T ss_dssp TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889988775 3433 222110 00 0 11 222222344444555554443 34455556666666666
Q ss_pred HHhHHhcCceeeEe--ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHH
Q 011669 392 TALKDKYGIIGDVR--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKE 464 (480)
Q Consensus 392 ~~l~~~~~~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~ 464 (480)
+++ +.+..+. ....++.+.+..... .....+.+.|.++|+++..... ...++||+....+|++
T Consensus 359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~~------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~e 428 (502)
T 3hbx_A 359 EKT----ERFNIVSKDEGVPLVAFSLKDSSC------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRT 428 (502)
T ss_dssp HTT----TCEEECSCSSSSSEEEEEESSCSS------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred HhC----CCEEEEeCCCCceEEEEEecCCCc------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHH
Confidence 654 3232222 234566666633210 1134788899999999753211 1257999999899999
Q ss_pred HHHHHHHHHHHHHhh
Q 011669 465 DADYLVDVMDYSLSK 479 (480)
Q Consensus 465 ~id~~l~~l~~~l~~ 479 (480)
+++.+++.|++++++
T Consensus 429 did~li~~L~~~l~~ 443 (502)
T 3hbx_A 429 LAERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 217
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.78 E-value=1.1e-17 Score=170.83 Aligned_cols=294 Identities=11% Similarity=0.015 Sum_probs=184.2
Q ss_pred CCCHHHHHHHHHHHHhccc----cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceE
Q 011669 115 HCHPYVVDSIVNQIKRIQH----STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDI 187 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~~~~----~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~i 187 (480)
+++++|++|+.++.....+ ....|......++++++++.++.+ ...+ ++||++|++.+++... .+++.|
T Consensus 35 ~n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~V 110 (431)
T 3ht4_A 35 SNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDEL 110 (431)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEE
T ss_pred HHHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEE
Confidence 3568888888775322111 112455678889999999999653 3333 5699999999997543 367788
Q ss_pred EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCC
Q 011669 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGV 266 (480)
Q Consensus 188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~ 266 (480)
++.++..|+.....+.+++. ++......|+....++.... +..| .++++++++ +++++|++++ .+++
T Consensus 111 l~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~--~~~d----~e~l~~~l~----~~tk~V~i~~sp~np 178 (431)
T 3ht4_A 111 LYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEG--GLVD----FEAVAAAIH----SNTKMIGIQRSKGYA 178 (431)
T ss_dssp EECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTT--SSBC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred EEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCC--CCcC----HHHHHhhcC----CCCeEEEEECCCCCC
Confidence 88884555666655555442 22222223555444443211 2234 677888775 3789999995 5555
Q ss_pred CcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC--ccccccccCHHHH
Q 011669 267 GGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG--IPLGAVVTTPEIA 342 (480)
Q Consensus 267 ~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G--~pig~v~~~~~~~ 342 (480)
+|.. .+...+++|.++|++ ||+++|+||+|..+.... ... ..+....+.+++|.+++| .+.|+++++++++
T Consensus 179 ~~~~-~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li 253 (431)
T 3ht4_A 179 TRPS-FTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYV 253 (431)
T ss_dssp SSCC-CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHH
Confidence 5543 466779999999999 999999999998775443 221 224444445789999974 5678999999988
Q ss_pred HhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-CceeeEeccceeEEEEEec
Q 011669 343 EVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVT 417 (480)
Q Consensus 343 ~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~i~~~~ 417 (480)
+.+... ..+.+.+.++..+.+++..++.+ +...++..+...++.+.|+++..+. |. ...++.++++.+.+.
T Consensus 254 ~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~- 329 (431)
T 3ht4_A 254 EACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD- 329 (431)
T ss_dssp HHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC-
T ss_pred HHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC-
Confidence 877541 12222333222233344555433 3456667777788888887763211 11 223455667788773
Q ss_pred CCCcCCCCHHHHHHHHHHHHHcC
Q 011669 418 DRQLKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~G 440 (480)
+......+++.|.+..
T Consensus 330 -------~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 330 -------DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp -------CHHHHHHHHHHHHHTS
T ss_pred -------CHHHHHHHHHHHHhcC
Confidence 2345677888888763
No 218
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.77 E-value=2.1e-16 Score=165.24 Aligned_cols=335 Identities=13% Similarity=0.028 Sum_probs=188.6
Q ss_pred CHHH-HHHHHHHHHhccccccccCChHH----HHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhc-------
Q 011669 117 HPYV-VDSIVNQIKRIQHSTVLYLNHAI----ADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT------- 182 (480)
Q Consensus 117 ~p~v-~~A~~~~~~~~~~~~~~~~~~~~----~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~------- 182 (480)
+|.+ .+++.+.+..... .....+.. .+++++++++++.+ .+.++|++|||+||..|+..++...
T Consensus 108 ~~~~~~e~l~~~~~~~~~--~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 185 (511)
T 3vp6_A 108 IIGLAGEWLTSTANTNMF--TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK 185 (511)
T ss_dssp HHHHHHHHHHHHHCCCSS--CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHhccCCC--CcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhc
Confidence 3444 4555555544321 11123433 45556667776544 3589999999999999999887631
Q ss_pred -----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCce
Q 011669 183 -----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHV 255 (480)
Q Consensus 183 -----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~ 255 (480)
++..|++.+..|+. ...+....+... ..+..++... . +.-| .++|++.|+.. ....+
T Consensus 186 G~~~~~~~~v~~s~~~H~s-~~~~~~~~g~g~-------~~~~~v~~d~--~--~~~d----~~~Le~~i~~~~~~g~~~ 249 (511)
T 3vp6_A 186 GMAAVPKLVLFTSEQSHYS-IKKAGAALGFGT-------DNVILIKCNE--R--GKII----PADFEAKILEAKQKGYVP 249 (511)
T ss_dssp CGGGSCCEEEEEETTSCTH-HHHHHHHTTSCG-------GGEEEECBCT--T--SCBC----HHHHHHHHHHHHHTTCEE
T ss_pred CcccCCCeEEEECCCchHH-HHHHHHHcCCCC-------CcEEEeecCC--C--CccC----HHHHHHHHHHHHhcCCCc
Confidence 23345555554433 333333322110 0122233221 1 1123 67888888632 12237
Q ss_pred EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccc
Q 011669 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPL 332 (480)
Q Consensus 256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pi 332 (480)
++|++...++++|.+.+ +++|.++|++||+++++|++|.+..... .-+.....|+ ..|++++ .|.+++.+.+
T Consensus 250 ~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~-~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~ 324 (511)
T 3vp6_A 250 FYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQC 324 (511)
T ss_dssp EEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCC
T ss_pred EEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhC-hhhhhhccCCccCCEEEECcccccCCCcCe
Confidence 88888888888998866 9999999999999999999998643322 1111122233 4577754 5999877778
Q ss_pred cccccCH-HHHHhh-cCCC-cc---------------ccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 011669 333 GAVVTTP-EIAEVL-TRRN-YF---------------NTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKER 390 (480)
Q Consensus 333 g~v~~~~-~~~~~l-~~~~-~~---------------~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~ 390 (480)
|+++.++ ++.... .... +. .++ .+.+....+..++|+.+.. +++.++..++.+++++.
T Consensus 325 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~ 404 (511)
T 3vp6_A 325 SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAK 404 (511)
T ss_dssp EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765 344432 1110 00 000 1112223334444544433 34556666677777777
Q ss_pred HHHhHHhcCceeeE---eccceeEEEEEecCCCcCCC-CH-------HHHHHHHHHHHHcCceeecc---CcCCCEEEEe
Q 011669 391 LTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTP-AK-------AETLYIMDKMKEMGVLVGKG---GFYGNVFRIT 456 (480)
Q Consensus 391 L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~-~~-------~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~ 456 (480)
|+++ +.+..+ .....++.+.+........+ .. .....+.+.|.++|+++... +...+++||+
T Consensus 405 L~~~----pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~ 480 (511)
T 3vp6_A 405 IKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMV 480 (511)
T ss_dssp HHSC----TTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEC
T ss_pred HhcC----CCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEE
Confidence 7653 322222 13344455544322110000 10 12346888899999765431 1112479999
Q ss_pred C-CCCCCHHHHHHHHHHHHHHHh
Q 011669 457 P-PLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 457 p-~~~~t~~~id~~l~~l~~~l~ 478 (480)
+ ...++++||+.++++|++.-+
T Consensus 481 ~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 481 ISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Confidence 8 577899999999999998754
No 219
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.76 E-value=8e-17 Score=161.99 Aligned_cols=314 Identities=12% Similarity=0.013 Sum_probs=194.5
Q ss_pred CCHHHHHHHHHHHHhccccccccCChHHHHHHHHH-HHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L-~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y 194 (480)
..|++.+++.+.++..+.. ...+...+|++++ +++++ ..+.+++++||++|+..+++.+. ..+++.||+..+.|
T Consensus 14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~ 88 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF 88 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence 3578899999988765321 1257788999999 99986 24678999999999999998652 23678999999999
Q ss_pred ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP 274 (480)
Q Consensus 195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~ 274 (480)
.+........ |...+.++.. ...|..| .+++++++... ..++++|+. + +.+|...+
T Consensus 89 ~~~~~~~~~~-------------G~~~~~v~~~-~~~~~~d----~~~l~~~i~~~-~~~tk~v~~--~-~~~G~~~~-- 144 (377)
T 3ju7_A 89 PATPLAAIWC-------------GLEPYFIDIS-IDDWYMD----KTVLWDKIEEL-KEEVAIVVP--Y-ATFGSWMN-- 144 (377)
T ss_dssp THHHHHHHHT-------------TCEEEEECBC-TTTCSBC----HHHHHHHHHHH-GGGEEEECC--B-CGGGBCCC--
T ss_pred HHHHHHHHHc-------------CCEEEEEecC-CccCCcC----HHHHHHHHhcC-CCCceEEEE--E-CCCCCccC--
Confidence 7754433222 2222222211 0123234 67888877321 013777773 3 34566554
Q ss_pred ChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CCCcceeeec----cccccCccccccccC-HHHHHhhcCC
Q 011669 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR 348 (480)
Q Consensus 275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~ 348 (480)
+++|.++|+ ||+++|+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++.+ +++.+.+...
T Consensus 145 --~~~i~~la~-~~~~vi~D~a~a-~g~~----~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~ 215 (377)
T 3ju7_A 145 --LEEYEELEK-KGVPVVVDAAPG-FGLM----NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM 215 (377)
T ss_dssp --CHHHHHHHH-TTCCBEEECTTC-TTCE----ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred --HHHHHHHHh-cCCEEEEECCCc-cCCe----ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence 899999999 999999999997 4321 111122 2224555544 999875 55666654 6666655432
Q ss_pred Cc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh-cCceeeEecc---ceeEE
Q 011669 349 NY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGDVRGR---GFLLG 412 (480)
Q Consensus 349 ~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~v~g~---g~~~~ 412 (480)
.. +..+..+++.++.+++.|+.+ +...++.+++.+++.+.|+++..- .+.. ...+. -.++.
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~ 292 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQ-LQKTEAVIQQFMP 292 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCB-CCCCSCBCCSSEE
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCcccccc-CCCCCcceEEEEE
Confidence 11 234556678877777777643 445666777777777777765210 1111 10111 11223
Q ss_pred EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--c---------------------CCCEEEEeCCCCCCHHHHHHH
Q 011669 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--F---------------------YGNVFRITPPLCFTKEDADYL 469 (480)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~---------------------~~~~iRi~p~~~~t~~~id~~ 469 (480)
+.+.. . ...+.+.+.|.++||.+.... . ..+.||+......|++|++++
T Consensus 293 ~~~~~-~-------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 293 ILCPE-E-------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp EECCT-T-------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred EEeCC-h-------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence 33211 0 114678899999999886532 0 024688888888999999999
Q ss_pred HHHHHHHHh
Q 011669 470 VDVMDYSLS 478 (480)
Q Consensus 470 l~~l~~~l~ 478 (480)
++.|.+++.
T Consensus 365 ~~~l~~~~~ 373 (377)
T 3ju7_A 365 VICLGQKVV 373 (377)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHh
Confidence 999987764
No 220
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.75 E-value=5.3e-16 Score=161.08 Aligned_cols=363 Identities=12% Similarity=0.025 Sum_probs=199.6
Q ss_pred CCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHH-HHHHHHHHHHhcccc
Q 011669 56 DGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY-VVDSIVNQIKRIQHS 134 (480)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~-v~~A~~~~~~~~~~~ 134 (480)
.+.+.+++++...+.+.++..+ +. ..+|+.++.+ |-..|. +.+.+...+....+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~p~~~~~~~~------~~~~~~~~~~~~~~~~n~~~~- 108 (481)
T 4e1o_A 54 DPDSWDSIFGDIERIIMPGVVH-WQ-----------------SPHMHAYYPA------LTSWPSLLGDMLADAINCLGF- 108 (481)
T ss_dssp SCCCHHHHHHHHHHHTGGGCCC-TT-----------------STTBCSSSCC------CCCHHHHHHHHHHHHHCCCCS-
T ss_pred CCCCHHHHHHHHHHHHhcCCCC-CC-----------------CCCeeEeCCC------CCCHHHHHHHHHHHHhCcccC-
Confidence 3446778888877776554322 11 1223333321 122344 44455555544221
Q ss_pred ccccCChHH----HHHHHHHHHhCCCCC----------CEEEEeCCHHHHHHHHHHHHHhhc-----------------C
Q 011669 135 TVLYLNHAI----ADFAEALASKMPGNL----------KVVFFTNSGTEANELAIMMARLYT-----------------G 183 (480)
Q Consensus 135 ~~~~~~~~~----~~l~e~L~~~~~~~~----------~~v~f~~sGseA~~~Alk~ar~~~-----------------~ 183 (480)
.....+.. .++.+++++.++.+. ...+|++|||+||..|+.++|... +
T Consensus 109 -~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 109 -TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp -STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred -CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 11123444 445556666654332 257899999999999999987641 2
Q ss_pred CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEc
Q 011669 184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSE 261 (480)
Q Consensus 184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~e 261 (480)
+..|++.+.++ .....+....+ .....+|... .+.-| .++|+++|+.. ....+.+|++.
T Consensus 188 ~~~v~~s~~~H-~s~~~~~~~~g------------~~~~~v~~~~--~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~ 248 (481)
T 4e1o_A 188 RLVAYASDQAH-SSVEKAGLISL------------VKMKFLPVDD--NFSLR----GEALQKAIEEDKQRGLVPVFVCAT 248 (481)
T ss_dssp TEEEEEETTSC-HHHHHHHHHHT------------CEEEEECCCT--TSCCC----HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEcCcch-HHHHHHHHhCC------------CceEEEEcCC--CCcCC----HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 33455555444 43333333322 2222222211 12224 67888888632 11125667777
Q ss_pred ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccC
Q 011669 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTT 338 (480)
Q Consensus 262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~ 338 (480)
...+++|.+.+ +++|.++|++||+++++|++|.++.... ..+.....++ ..|.+++ .|.++..+.+|+++.+
T Consensus 249 ~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~ 323 (481)
T 4e1o_A 249 LGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLC-PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVK 323 (481)
T ss_dssp BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEES
T ss_pred cCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhC-hhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEe
Confidence 67777888866 9999999999999999999998653322 1111112233 3577765 5999877777877776
Q ss_pred HH-HH-HhhcCCCcc--c------------cC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669 339 PE-IA-EVLTRRNYF--N------------TF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY 398 (480)
Q Consensus 339 ~~-~~-~~l~~~~~~--~------------t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 398 (480)
++ .. +.+.....+ . +. .+.+.......++|+.+.. ++..++..++.+++++.|+++
T Consensus 324 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---- 399 (481)
T 4e1o_A 324 DKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND---- 399 (481)
T ss_dssp BHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 54 32 222111000 0 00 1111122333344443333 345566666677777766654
Q ss_pred CceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce-eeccCcC-CCEEEEeCCC-CCCHHHHHHHHHHHH
Q 011669 399 GIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL-VGKGGFY-GNVFRITPPL-CFTKEDADYLVDVMD 474 (480)
Q Consensus 399 ~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~-~~~iRi~p~~-~~t~~~id~~l~~l~ 474 (480)
+.+..+ .....++++.+.. .......+.+.|.++|++ +.++... ..++||+... .+|++||++++++|+
T Consensus 400 ~g~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~ 472 (481)
T 4e1o_A 400 PSFEIPAKRHLGLVVFRLKG-------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIR 472 (481)
T ss_dssp TTEECCSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEecCCceeEEEEEeCC-------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222221 2233455565521 123456788889888854 4443222 3579999653 458999999999999
Q ss_pred HHHhh
Q 011669 475 YSLSK 479 (480)
Q Consensus 475 ~~l~~ 479 (480)
+++++
T Consensus 473 ~~~~~ 477 (481)
T 4e1o_A 473 DAATL 477 (481)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.75 E-value=6.9e-16 Score=160.45 Aligned_cols=326 Identities=10% Similarity=-0.025 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhcccccccc--CChHHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhc-----
Q 011669 119 YVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT----- 182 (480)
Q Consensus 119 ~v~~A~~~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~----- 182 (480)
.+.+++...+.......... ......+++++++++++.+. ..++||+||||||..|+..++...
T Consensus 89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~ 168 (486)
T 1js3_A 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ 168 (486)
T ss_dssp HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence 46666666654322111111 12333456667788876542 358899999999999999886431
Q ss_pred ---CC-------ce--EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669 183 ---GC-------ND--IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (480)
Q Consensus 183 ---~~-------~~--ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (480)
+. ++ |++.+.+|+.....+. ..+. .+..++.. ..+.-| .++|+++|+..
T Consensus 169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~-~~G~----------~v~~v~~d----~~~~~d----~~~L~~~i~~~ 229 (486)
T 1js3_A 169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGL-IGGV----------KLKAIPSD----GKFAMR----ASALQEALERD 229 (486)
T ss_dssp HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHH-HHTC----------EEEEECCC----TTSCCC----HHHHHHHHHHH
T ss_pred ccCccchhcccCCCEEEEECCCCcHHHHHHHH-hCCC----------ceEEeecC----CCCCCC----HHHHHHHHHHH
Confidence 21 23 5556666654332222 2211 22233321 122234 67888888642
Q ss_pred C--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccc
Q 011669 251 T--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKG 325 (480)
Q Consensus 251 ~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~ 325 (480)
. ...+.+|++...++++|.+.+ +++|.++|++||+++++|++|.++....+.+ .....++ ..|++++ +|.
T Consensus 230 ~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~-~~~~~g~~~adsi~~~~hK~ 304 (486)
T 1js3_A 230 KAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEFADSFNFNPHKW 304 (486)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGGCSEEEECHHHH
T ss_pred HhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHH-HHHhcCccccCeeEEchhhh
Confidence 1 112346666666677887766 9999999999999999999998653222111 1111122 3577664 599
Q ss_pred cccCccccccccCHH--HHHhhcCC---Ccc-c----------cC---CCcHHHHHHHHHHHHHhhhh---HHHHHHHHH
Q 011669 326 IGNGIPLGAVVTTPE--IAEVLTRR---NYF-N----------TF---GGNPVCTAAGHAVLKVIQKD---KLQNNAHVV 383 (480)
Q Consensus 326 ~g~G~pig~v~~~~~--~~~~l~~~---~~~-~----------t~---~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~ 383 (480)
++..+++|+++++++ +.+.+... ... . .+ .+.+....+..++++.+..+ +..++..++
T Consensus 305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~ 384 (486)
T 1js3_A 305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQL 384 (486)
T ss_dssp SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 887789999998754 24444211 000 0 00 01111223333444433333 345555666
Q ss_pred HHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeC-CC
Q 011669 384 GSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITP-PL 459 (480)
Q Consensus 384 ~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p-~~ 459 (480)
.+++.+.|+++ +.+..+ ...+.++.+.+.. .......+.+.|.++|+++...+.+ .+++|++. ..
T Consensus 385 a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 385 SHEFEAFVLQD----PRFEVCAEVTLGLVCFRLKG-------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHC----TTEEECSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred HHHHHHHHhcC----CCeEEeCCCceeEEEEEecC-------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence 66666666553 322221 2334455555421 1122467888888888764332222 35899995 34
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 011669 460 CFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 460 ~~t~~~id~~l~~l~~~l~~ 479 (480)
..|+++|++++++|++++++
T Consensus 454 ~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 454 KVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999988653
No 222
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.75 E-value=7.6e-17 Score=166.69 Aligned_cols=320 Identities=14% Similarity=0.105 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHHh-ccc--cccccC--Ch---HH-HHHHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHhhcC
Q 011669 116 CHPYVVDSIVNQIKR-IQH--STVLYL--NH---AI-ADFAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTG 183 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~-~~~--~~~~~~--~~---~~-~~l~e~L~~~~~~~~~---~v~f~~sGseA~~~Alk~ar~~~~ 183 (480)
.+|+|++|+.+.+.+ ..+ ....|. ++ .+ ...+++++++++.+.+ ..++++||++||..+++.... +
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--S
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC--C
Confidence 579999999887654 211 111111 12 22 2344889999976553 346778999999999986643 6
Q ss_pred CceEEEEcCCcccccc-c------ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669 184 CNDIISLRNAYHGNAA-G------TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (480)
Q Consensus 184 ~~~ii~~~~~yhG~~~-~------~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (480)
+++|++.+..|.|... + .+...+. .+..++++.. ...+..| .+++++++... +++
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd-~~~~~iD----~d~le~~l~~~---~~k 205 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLN-PKTGLID----YNQLALTARLF---RPR 205 (490)
T ss_dssp CEECCC-----------------------------------------CCBC-TTTCSBC----HHHHHHHHHHH---CCS
T ss_pred CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEecccc-cccCCcC----HHHHHHHHhhc---CCc
Confidence 7888888776643211 1 1111110 0111111100 0011123 67888888632 345
Q ss_pred EEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCccee--eeccccccCccc
Q 011669 257 GFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPL 332 (480)
Q Consensus 257 ~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pi 332 (480)
+|++.. .++ ...+ +++|+++|++||++||+|++|. |+...|.....++ ..|++ |++|+++ |.+.
T Consensus 206 lIi~~~s~~~---~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~G 273 (490)
T 2a7v_A 206 LIIAGTSAYA---RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARS 273 (490)
T ss_dssp EEEECCSSCC---SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSC
T ss_pred EEEEcCCCCC---Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccc
Confidence 666653 332 2222 9999999999999999999974 3322331111111 24666 5679995 4567
Q ss_pred cccccCHH---------------HHHhhcCCCccccCCC-cHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH
Q 011669 333 GAVVTTPE---------------IAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA 393 (480)
Q Consensus 333 g~v~~~~~---------------~~~~l~~~~~~~t~~~-~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~ 393 (480)
|+++++++ +.+.+......++.++ ++..+++..+++..+.. +++.+++.++.+++++.|.+
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~ 353 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888764 3444443322233343 33444444445655433 34667778888888888877
Q ss_pred hHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCC----CC
Q 011669 394 LKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPL----CF 461 (480)
Q Consensus 394 l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~----~~ 461 (480)
. .+..+. .+ ...++++++.... .....+.+.|.+.||.+..+. .....|||+.|. .+
T Consensus 354 ~--G~~v~~--~~t~t~lv~vdl~~~g-------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~ 422 (490)
T 2a7v_A 354 R--GYSLVS--GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp T--TCEEGG--GSCSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred c--CcEEec--CCCCCeEEEEEeCCCC-------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCC
Confidence 4 222111 11 2345666663221 113557778889999997431 123679996543 46
Q ss_pred CHHHHHHHHHHHHHHHh
Q 011669 462 TKEDADYLVDVMDYSLS 478 (480)
Q Consensus 462 t~~~id~~l~~l~~~l~ 478 (480)
+++|++++++.|.+++.
T Consensus 423 ~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 423 REDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999999988874
No 223
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.72 E-value=2.7e-16 Score=161.27 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH 220 (480)
Q Consensus 141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~ 220 (480)
+...+++++++++++.+.+++.++++|+.++++++..++ ..++++||+.++.|+........... ..|+.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~---------~~G~~ 177 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLE---------AVGAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHH---------HTTCE
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHH---------HCCCE
Confidence 456789999999987655567899999955555544433 34678899888877554322211100 01222
Q ss_pred EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc-ccC
Q 011669 221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV-QAG 299 (480)
Q Consensus 221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv-~tg 299 (480)
.+.++.. .+..| +++ ++ +++++|++... +++|.+.+ +++|.++|++||+++|+|-- ++
T Consensus 178 v~~v~~~---~~~~d-------~~~-i~----~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a- 236 (438)
T 1wyu_A 178 LLTLPLE---GGRTP-------LPE-VG----EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS- 236 (438)
T ss_dssp EEEECCB---TTBCC-------CCC-CC----TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred EEEEcCc---CCccC-------HHH-hC----CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence 2222210 11112 111 32 36788887776 78888875 99999999999999995522 22
Q ss_pred ccccCCCcccccccCCCcceeeec-cccc-----cCccccccccCHHHHHhhcCCCc-----------------------
Q 011669 300 FARTGSHFWGFEAHGVVPDIVTMA-KGIG-----NGIPLGAVVTTPEIAEVLTRRNY----------------------- 350 (480)
Q Consensus 300 fgr~G~~~~~~~~~~~~pDivt~s-K~~g-----~G~pig~v~~~~~~~~~l~~~~~----------------------- 350 (480)
+|... .. ..+ .+|++++| |.++ +|.++|++++++++++.+.....
T Consensus 237 ~g~~~-~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 237 LGVLK-PP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp GGTBC-CH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred ccCcC-CC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 32211 11 112 36788764 6543 45689999999988776532210
Q ss_pred ---cccCCC---cHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc
Q 011669 351 ---FNTFGG---NPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL 421 (480)
Q Consensus 351 ---~~t~~~---~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~ 421 (480)
..|.+. +.++..++...++.+.++ +..++..++.+++.++|+++ +.+........+..+.+..+
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~--- 383 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALP--- 383 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECS---
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCCCCeEEEEEEeCC---
Confidence 122222 223222222224444333 34455556666666666543 22221111123333333211
Q ss_pred CCCCHHHHHHHHHHHHHcCcee--eccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669 422 KTPAKAETLYIMDKMKEMGVLV--GKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSL 477 (480)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~Gv~v--~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l 477 (480)
.....+.+.|.++||.+ .++..+ .+++||++...+|++|+++++++|++++
T Consensus 384 -----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 -----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01467888999999999 444322 5789999988899999999999998864
No 224
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.72 E-value=1.2e-15 Score=158.01 Aligned_cols=301 Identities=10% Similarity=-0.052 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhc-----------------CCceEEEEcCCccc
Q 011669 143 IADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT-----------------GCNDIISLRNAYHG 196 (480)
Q Consensus 143 ~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~-----------------~~~~ii~~~~~yhG 196 (480)
..++++++++.++.+. ...+|++|||+||..|+..+|... ++..|++.+..+ -
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H-~ 193 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH-S 193 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC-H
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch-H
Confidence 3445566677775432 268899999999999999987542 122345544444 4
Q ss_pred ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCC
Q 011669 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAP 274 (480)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~ 274 (480)
....+.... |+....+|....+ .| .++|+++|+... ...+.+|++....+++|.+.+
T Consensus 194 s~~~~~~~~------------g~~~~~v~~d~~~---~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~-- 252 (475)
T 3k40_A 194 SVERAGLLG------------GVKLRSVQSENHR---MR----GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY-- 252 (475)
T ss_dssp HHHHHHHHH------------TCEEEEECCBTTB---CC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--
T ss_pred HHHHHHHHc------------CCceEEEECCCCC---cC----HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC--
Confidence 333333332 2222222221111 23 678888886421 112556666666677888876
Q ss_pred ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccCHH-H-HHhhcCCC
Q 011669 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-I-AEVLTRRN 349 (480)
Q Consensus 275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~-~-~~~l~~~~ 349 (480)
+++|.++|++||+++++|++|.+..... ..+.....++ ..|.+++ .|.+++.+.+|+++.+++ . .+.+....
T Consensus 253 --l~~I~~la~~~~~~lhvD~A~~~~~~~~-~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~ 329 (475)
T 3k40_A 253 --LDECGPVGNKHNLWIHVDAAYAGSAFIC-PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDP 329 (475)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------
T ss_pred --HHHHHHHHHHhCCeEEEeHHhHHHHHhC-HhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCc
Confidence 9999999999999999999997642222 1111111232 3577766 499987777888877643 2 12221100
Q ss_pred -c------c--------ccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-ecccee
Q 011669 350 -Y------F--------NTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFL 410 (480)
Q Consensus 350 -~------~--------~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~ 410 (480)
+ . ....+.+.......++|+.+.. +++.++..++.+++++.|+++ +.+..+ .....+
T Consensus 330 ~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~i 405 (475)
T 3k40_A 330 LYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGL 405 (475)
T ss_dssp -------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTE
T ss_pred cccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEE
Confidence 0 0 0001212233344455554433 345566667777777777664 222211 123345
Q ss_pred EEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee-eccCcC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV-GKGGFY-GNVFRITPP-LCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~~~~-~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~ 479 (480)
+.+.+.. .......+.+.|.++|.++ .++... ..++||++. ..+|++||++++++|++++++
T Consensus 406 v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 406 VCFRLKG-------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555522 1234567888898888654 333222 368999965 345899999999999988764
No 225
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.69 E-value=9.2e-16 Score=153.33 Aligned_cols=322 Identities=12% Similarity=0.041 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHHHHHhccc-cccc--------cCChHHHHHHHHHHHhCCCCC-CEEEE-eCCHHHHHHHHHHHHHhhc
Q 011669 114 GHCHPYVVDSIVNQIKRIQH-STVL--------YLNHAIADFAEALASKMPGNL-KVVFF-TNSGTEANELAIMMARLYT 182 (480)
Q Consensus 114 Gh~~p~v~~A~~~~~~~~~~-~~~~--------~~~~~~~~l~e~L~~~~~~~~-~~v~f-~~sGseA~~~Alk~ar~~~ 182 (480)
+..+|+|.+|+.+.+.+... ..+. -......+.+++|+++++.+. ++|+| +.|||||++++++......
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~ 101 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK 101 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence 45789999999987754211 1110 013456788899999987643 46888 5899999999998665422
Q ss_pred CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669 183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262 (480)
Q Consensus 183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep 262 (480)
++++++....+.++.... ... ...|......+...... .+ .++++..+ .++++.|.+-.
T Consensus 102 ~Gd~v~~~~~g~~~~~~~--~~a---------~~~G~~~~~~~~~~~~~--~~----~~~~~~~i----~~~t~lV~~~h 160 (377)
T 3e77_A 102 AGRCADYVVTGAWSAKAA--EEA---------KKFGTINIVHPKLGSYT--KI----PDPSTWNL----NPDASYVYYCA 160 (377)
T ss_dssp TTCEEEECCCSHHHHHHH--HHH---------TTTSEEEECSCCCSSSC--SC----CCGGGCCC----CTTCSCEEEES
T ss_pred CCCeEEEEECCHHHHHHH--HHH---------HHhCCceEEeccCCCcC--CC----CChHHhcc----CCCccEEEEeC
Confidence 356777777777664211 110 11243333233211111 11 12222222 23667777766
Q ss_pred cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHH
Q 011669 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE 340 (480)
Q Consensus 263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~ 340 (480)
+.+.+|.+.| + +|+++|+++++|-+|+ +|.. .+..+.++ ++++| |.+| .-.+|+++++++
T Consensus 161 ~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~---~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~ 222 (377)
T 3e77_A 161 NETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK---PVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDD 222 (377)
T ss_dssp EETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS---CCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETT
T ss_pred ccCchheEch----h-----hhccCCCEEEEEcccc-cCCC---CCchhhcC----EEEEecccccC-CCccEEEEEcHH
Confidence 6677798876 3 4789999999999997 5432 22234344 34444 9995 445688888877
Q ss_pred HHHhhcCCC-----------ccccCCC-cHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcC-ceee
Q 011669 341 IAEVLTRRN-----------YFNTFGG-NPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYG-IIGD 403 (480)
Q Consensus 341 ~~~~l~~~~-----------~~~t~~~-~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~ 403 (480)
+.+.+.+.. ...+++. |..+.++..++|+.+.++ +..++.+++.++++++|+++.. +. ....
T Consensus 223 ~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g-~~~~~~~ 301 (377)
T 3e77_A 223 LLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQG-FYVCPVE 301 (377)
T ss_dssp SCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT-SEECCSC
T ss_pred HHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCC-ceecCCC
Confidence 654433210 1123433 444555666788877654 3556667777777777766411 10 0001
Q ss_pred Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 404 VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 404 v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
...+ +..+.|.+... .++......+...+.++||.+.++-...+.+|+++...+|++|||.+++.|++++++
T Consensus 302 ~~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 302 PQNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1112 23355555221 111122245777788999998776332356999999999999999999999998764
No 226
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.69 E-value=3.5e-15 Score=151.15 Aligned_cols=284 Identities=12% Similarity=0.091 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHHHh---ccc-cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEE
Q 011669 116 CHPYVVDSIVNQIKR---IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII 188 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~---~~~-~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii 188 (480)
|+++|.+|+.+.... ... ....|......+|.++++++++. +..++ ++||++|+..+++... .+++.||
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl 105 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL 105 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence 457888888775321 111 11245567788999999999864 44455 8999999999998653 3678888
Q ss_pred EEc-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----c
Q 011669 189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I 263 (480)
Q Consensus 189 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i 263 (480)
+.+ +.|.+... .+...+. ........|+....++... .+..| .++++++++ +++++|++++ +
T Consensus 106 ~~~~~~y~~~~~-~~~~~g~--~~~~l~~~G~~~~~v~~~~--~g~~d----~e~l~~ai~----~~tklV~i~~s~g~p 172 (409)
T 3jzl_A 106 YITGQPYDTLEE-IVGIRKQ--GQGSLKDFHIGYSSVPLLE--NGDVD----FPRIAKKMT----PKTKMIGIQRSRGYA 172 (409)
T ss_dssp ECSSSCCTTHHH-HHTSSSS--SSSCTGGGTCEEEECCCCT--TSCCC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred EeCCCCcHhHHH-HHhcccc--hhhHHHHcCCEEEEeCCCC--CCCcC----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence 887 66655432 1111111 0000111244444333211 12233 677877774 3789999998 8
Q ss_pred CCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--cccccccc
Q 011669 264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT 337 (480)
Q Consensus 264 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~ 337 (480)
++++|.+.+ +++|.++|++ ||+++|+||+|..+.... .. .....|++ +++|.++++ ...|++++
T Consensus 173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~-~p-----~~~g~Div~~S~sK~lgg~~~~~GG~v~~ 242 (409)
T 3jzl_A 173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ-EP-----PEVGADIIAGSLIKNPGGGLAKTGGYIAG 242 (409)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC-CS-----GGGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC-Cc-----cccCCeEEEECccccCCccCCceEEEEEe
Confidence 888888876 9999999999 999999999987442111 11 11234665 688999964 34589999
Q ss_pred CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee----Eeccce
Q 011669 338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD----VRGRGF 409 (480)
Q Consensus 338 ~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----v~g~g~ 409 (480)
++++++.+.... .+.+.+..+..+.+++..|+.+ +...++..+...++.+.|+++ +.... .++..+
T Consensus 243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~~ 316 (409)
T 3jzl_A 243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTDL 316 (409)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSS
T ss_pred CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCccE
Confidence 999988876421 1122332222233344444422 345566667777777777765 32111 111223
Q ss_pred eEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 440 (480)
++.+.+. +......+++.|.+..
T Consensus 317 i~~i~l~--------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 317 IQSVSFH--------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp CCEEECS--------CHHHHHHHHHHHHHTS
T ss_pred EEEEEeC--------CHHHHHHHHHHHHhcC
Confidence 6666662 3445677888888765
No 227
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.64 E-value=2.6e-14 Score=145.41 Aligned_cols=285 Identities=14% Similarity=0.123 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHH--h-cccc-ccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669 117 HPYVVDSIVNQIK--R-IQHS-TVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDIIS 189 (480)
Q Consensus 117 ~p~v~~A~~~~~~--~-~~~~-~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii~ 189 (480)
.++|.+|+.+... . +... ...|......+|.++++++++. +..++ ++||++||..++..... +++.||+
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all~--pGD~Vl~ 120 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNLR--PGNTMLS 120 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHCC--TTCEEEE
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHhC--CCCEEEE
Confidence 4678887766421 1 1111 1235567788999999999965 33345 89999999999886533 6788888
Q ss_pred Ec-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----cC
Q 011669 190 LR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----IQ 264 (480)
Q Consensus 190 ~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i~ 264 (480)
.+ +.|++..... ....... .......|+....++....+ ..| .++++++++. ..++++|++++ ++
T Consensus 121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g--~~D----~e~l~~~l~~--~~~tklV~i~~s~~~p~ 190 (427)
T 3i16_A 121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDG--KPN----LEEIEKVLKE--DESITLVHIQRSTGYGW 190 (427)
T ss_dssp SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTS--SCC----HHHHHHHHHT--CTTEEEEEEECSCCSSS
T ss_pred eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCC--CcC----HHHHHHHhhC--CCCCEEEEEEcCCCCCC
Confidence 88 6776543211 1110000 00011124444444322111 123 6788888863 13789999999 78
Q ss_pred CCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--ccccccccC
Q 011669 265 GVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTT 338 (480)
Q Consensus 265 ~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~~ 338 (480)
|++|.+.+ +++|.++|++ ||+++|+||+|..+.... .. . ..+ .|++ |++|.++++ .+.|+++++
T Consensus 191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~p--~-~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~ 260 (427)
T 3i16_A 191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-EP--T-DVG--ADLIAGSLIKNIGGGIAPTGGYLAGT 260 (427)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-CG--G-GGT--CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-Cc--c-ccC--CeEEEecCcccCCCCCCceEEEEEEC
Confidence 88887766 9999999999 999999999997543122 11 1 123 3555 788999964 467899999
Q ss_pred HHHHHhhcCCCccccCC---CcHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce-----
Q 011669 339 PEIAEVLTRRNYFNTFG---GNPVC-TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF----- 409 (480)
Q Consensus 339 ~~~~~~l~~~~~~~t~~---~~~~~-~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~----- 409 (480)
+++++.+........++ +..+. +..++..|+.+ ....++..+...++.+.|+++ +... .++...
T Consensus 261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~ 333 (427)
T 3i16_A 261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSS
T ss_pred HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccE
Confidence 99998876521111111 11122 23333333321 344566666677777777665 3211 222222
Q ss_pred eEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMG 440 (480)
Q Consensus 410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G 440 (480)
++.+.+. +......+++.|....
T Consensus 334 i~~i~l~--------~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 334 IQSIKFN--------DKDKLIEFCKGIQTGS 356 (427)
T ss_dssp CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence 6666662 2345677888888763
No 228
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.63 E-value=4.8e-14 Score=143.42 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHHhccc----cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEE
Q 011669 116 CHPYVVDSIVNQIKRIQH----STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII 188 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~----~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii 188 (480)
++++|.+|+.+......+ ....|......+|+++++++++. +..++ ++||++||..++.... .+++.|+
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~all--~pGD~Vl 120 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGNL--RPNDTMM 120 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHTC--CTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHhc--CCCCEEE
Confidence 457888888774321111 11235566788999999999864 44455 8999999999987643 3678899
Q ss_pred EEc-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----c
Q 011669 189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I 263 (480)
Q Consensus 189 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i 263 (480)
+.+ +.|++.... ......+ +.......|+....++. ..+..| .++++++++.. .++++|++++ +
T Consensus 121 ~~~~~~y~~~~~~-~g~~~~~-~~~~l~~~G~~~~~v~~---~~~~~d----~e~l~~~i~~~--~~tklV~i~~s~gyp 189 (427)
T 3hvy_A 121 SICGMPYDTLHDI-IGMDDSK-KVGSLREYGVKYKMVDL---KDGKVD----INTVKEELKKD--DSIKLIHIQRSTGYG 189 (427)
T ss_dssp ECSSSCCGGGHHH-HTCCTTC-CSCCTGGGTCEEEECCC---BTTBCC----HHHHHHHHHHC--TTEEEEEEESSCCSS
T ss_pred EeCCCCchhHHHH-hccccch-hhhHHHHcCCEEEEecC---CCCCcC----HHHHHHHhhCC--CCCEEEEEECCCCCC
Confidence 988 777665411 1100000 00001112444444332 112234 67888888631 3789999999 7
Q ss_pred CCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--cccccccc
Q 011669 264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT 337 (480)
Q Consensus 264 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~ 337 (480)
++++|.+.+ +++|.++|++ ||+++|+||+|..+.... .. . .++ .|++ |++|.++++ .+.|++++
T Consensus 190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~p--~-~~g--aDiv~~S~sK~lgg~g~~~GG~i~~ 259 (427)
T 3hvy_A 190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-EP--T-DVG--ADIIAGSLIKNIGGGIATTGGYIAG 259 (427)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-CG--G-GGT--CSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-CC--c-ccC--CeEEEECCcccccccccceEEEEEE
Confidence 788887765 9999999999 899999999997442122 11 1 123 4555 788999964 45689999
Q ss_pred CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-----c
Q 011669 338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-----G 408 (480)
Q Consensus 338 ~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-----g 408 (480)
++++++.+.... .+.+.+.++..+..++..|+.+ +...++..+...++.+.|+++ +... .++. .
T Consensus 260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~ 332 (427)
T 3hvy_A 260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD 332 (427)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence 999988876521 1112222122133334444322 345566666777777777665 3211 2222 2
Q ss_pred eeEEEEEecCCCcCCCCHHHHHHHHHHHHHc
Q 011669 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439 (480)
Q Consensus 409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (480)
+++.+.+. +.....++++.|...
T Consensus 333 li~~~~l~--------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 333 IIQAIKFN--------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred EEEEEeCC--------CHHHHHHHHHHhccc
Confidence 25666652 234567788888765
No 229
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.63 E-value=8.9e-15 Score=145.60 Aligned_cols=313 Identities=12% Similarity=0.019 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHHhccc-cccc--------cCChHHHHHHHHHHHhCCCC-CCEEEE-eCCHHHHHHHHHHHHHhhcCC
Q 011669 116 CHPYVVDSIVNQIKRIQH-STVL--------YLNHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGC 184 (480)
Q Consensus 116 ~~p~v~~A~~~~~~~~~~-~~~~--------~~~~~~~~l~e~L~~~~~~~-~~~v~f-~~sGseA~~~Alk~ar~~~~~ 184 (480)
.+|+|.+|+.+.+..... ..+. -....+.+.++.|+++++.+ ..+|+| |+|||||++++++... ++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 479999999987753211 0110 11255678889999998764 346777 9999999999998654 34
Q ss_pred ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669 185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ 264 (480)
Q Consensus 185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~ 264 (480)
+++.....+.++.... ..... . ...+..++.+. .+.+..+ .++ + |+ ++++.|.+-.+.
T Consensus 93 ~~~~~i~~~~~~~~~~-~~a~~-----~---G~~v~~~~~~~--~g~~~~~----~~~-~--l~----~~t~lv~~~~~e 150 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAI-KEAQI-----L---GVNVKTVASSE--ESNFDHI----PRV-E--FS----DNADYAYICSNN 150 (361)
T ss_dssp SCEEEEECSHHHHHHH-HHHHH-----T---TCCEEEEEECT--TTTSCSC----CCC-C--CC----TTSSEEEEESEE
T ss_pred CeEEEEeCCHHHHHHH-HHHHH-----c---CCceEEEeccc--CcCCCcC----Chh-h--cC----CCCCEEEEeCCC
Confidence 4443333344443211 11100 0 01223333221 1111001 112 2 32 356677776666
Q ss_pred CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHH
Q 011669 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA 342 (480)
Q Consensus 265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~ 342 (480)
+.+|.+.+. +++ +|+++++|-+|+ +|... ++.. ..|++++| |.+| .-.+|++++++++.
T Consensus 151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~~-----id~~--~~d~~~~s~~K~~g-p~G~g~l~~~~~~~ 211 (361)
T 3m5u_A 151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFSRK-----VDFS--NIALFYGGVQKNAG-ISGLSCIFIRKDML 211 (361)
T ss_dssp TTTTEECSS---------CCC-CSSCEEEECGGG-TTSSC-----CCCT--TEEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred CCcceeCCc---------ccc-cCCEEEEEcccc-cCCCC-----CCcc--cCCEEEEechhccC-CCccEEEEEcHHHH
Confidence 667887542 333 499999999997 54321 2222 25788776 9985 44578999999987
Q ss_pred HhhcCC----C--------ccccCC-CcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669 343 EVLTRR----N--------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405 (480)
Q Consensus 343 ~~l~~~----~--------~~~t~~-~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~ 405 (480)
+.+.+. . ...+++ .|..+..+..++|+.+.++ +..++.+++.++++++|+++..-+.......
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 291 (361)
T 3m5u_A 212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK 291 (361)
T ss_dssp HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG
T ss_pred hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH
Confidence 665430 0 112333 3455566666888887654 4556677777777777766520000011111
Q ss_pred cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 406 GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 406 g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
.+ ...+.+.+... + ... ..+...|.++||.+.++-..-+.+|+++...+|++|||.+++.|+++.++
T Consensus 292 ~rs~~ivsf~~~~~-----~-~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 292 DRSLMNVSFNIAKN-----K-DLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GBCSSEEEEEESSC-----T-THH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEECCCc-----h-hhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 11 23445555210 0 112 35778888999998765322245999999999999999999999998764
No 230
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.63 E-value=2.3e-15 Score=151.17 Aligned_cols=322 Identities=11% Similarity=0.005 Sum_probs=184.4
Q ss_pred CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc----------ccccccCChHHHHHHHHHHHhCCCCC-CEEEE-eCC
Q 011669 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFF-TNS 166 (480)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~----------~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f-~~s 166 (480)
+.|||..+.. --+|+|++|+.+.+.+.. |.. .-......+.++.|+++++... ++|+| +.|
T Consensus 27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~ 99 (386)
T 3qm2_A 27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRG-KEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG 99 (386)
T ss_dssp CCEECCSSSC------CCCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC
Confidence 4688754332 357999999987664421 111 1113456788899999987643 46788 699
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC-eeEecCCCCcCCCCC--CChHHHHHHH
Q 011669 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-VHHALNPDPYRGVFG--ADGEMYAKDV 243 (480)
Q Consensus 167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~~~--~d~~~~~~~l 243 (480)
||||++++++.... ++++++....+.++... ...... .| +..++.+.. .++ .+ .+++
T Consensus 100 ~T~a~n~ai~~l~~--~gd~v~~~~~~~~~~~~-~~~a~~----------~G~v~~v~~~~~---~~G~~~~----~~~~ 159 (386)
T 3qm2_A 100 GRGQFAGVPLNLLG--DKTTADYVDAGYWAASA-IKEAKK----------YCAPQIIDAKIT---VDGKRAV----KPMR 159 (386)
T ss_dssp TTHHHHHHHHHHCT--TCCEEEEEESSHHHHHH-HHHHTT----------TSEEEEEECEEE---ETTEEEE----CCGG
T ss_pred chHHHHHHHHhccC--CCCeEEEEeCCHHHHHH-HHHHHH----------hCCeEEEecCcc---cCCCCCC----chHH
Confidence 99999999986532 45677766666666421 111110 12 222222100 011 01 1233
Q ss_pred HHHHHccCCCceEEEEEcccCCCCcce-eCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee
Q 011669 244 QDLIDFGTSGHVAGFLSESIQGVGGII-ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322 (480)
Q Consensus 244 e~~i~~~~~~~~a~vi~epi~~~~G~~-~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~ 322 (480)
+..++ +++++|.+-.+.+.+|.+ .| +++|. +|+++++|-+|+ +|.. ....+.++ .++.+-
T Consensus 160 ~~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~---pidv~~~~--~~~~s~ 220 (386)
T 3qm2_A 160 EWQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA---PLDVSRYG--VIYAGA 220 (386)
T ss_dssp GCCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS---CCCGGGCS--EEEEET
T ss_pred HhhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC---CCCccccC--EEEEec
Confidence 33332 367778777777778986 54 33332 899999999997 5432 22233333 233333
Q ss_pred ccccccCccccccccCHHHHHhhcCCC-----------ccccC-CCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHH
Q 011669 323 AKGIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSY 386 (480)
Q Consensus 323 sK~~g~G~pig~v~~~~~~~~~l~~~~-----------~~~t~-~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~ 386 (480)
-|.+| ...+|++++++++.+.+.+.. ....+ ..|..+.++..++|+.+.++ +..++.+++.++
T Consensus 221 hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~ 299 (386)
T 3qm2_A 221 QKNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAEL 299 (386)
T ss_dssp TTTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 49994 455788999888754433210 01112 22334555666777776554 355666777777
Q ss_pred HHHHHHHhHHhcCceee---Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669 387 LKERLTALKDKYGIIGD---VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462 (480)
Q Consensus 387 l~~~L~~l~~~~~~~~~---v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t 462 (480)
++++|+++ ++... ...+ ...+.|.+... ... ..+...|.++||.+..+-...+.+|+++...+|
T Consensus 300 l~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~~-------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t 367 (386)
T 3qm2_A 300 LYGVIDNS----DFYRNDVAQANRSRMNVPFQLADN-------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMP 367 (386)
T ss_dssp HHHHHHTC----SSEECCBCGGGBCSSEEEEEESSG-------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSC
T ss_pred HHHHHHHC----CCcccCCCHHHcCceEEEEECCCc-------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCC
Confidence 77777665 32211 1112 23445555210 112 456667889999987653222459999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011669 463 KEDADYLVDVMDYSLSK 479 (480)
Q Consensus 463 ~~~id~~l~~l~~~l~~ 479 (480)
++|||.+++.|+++.++
T Consensus 368 ~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 368 IEGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 231
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.62 E-value=3.1e-14 Score=153.65 Aligned_cols=314 Identities=12% Similarity=0.023 Sum_probs=174.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (480)
Q Consensus 139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g 218 (480)
+.....++.+.+++.++.+ ..++++||+++||..++..... +++.||+.+++|+....+.+...+
T Consensus 171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~~--pGD~VLv~~~~H~S~~~~~~~l~G------------ 235 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAG------------ 235 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHCC------------
Confidence 3456789999999999754 3466666667999999987543 678899998887665544122222
Q ss_pred eeEecCCCCcCCCCC----CChHHH-HHHHHHHHHcc------CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHH
Q 011669 219 VHHALNPDPYRGVFG----ADGEMY-AKDVQDLIDFG------TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKK 286 (480)
Q Consensus 219 ~~~~~~p~~~~~~~~----~d~~~~-~~~le~~i~~~------~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~ 286 (480)
...+.++... ..|+ .|.+.. .+.|+++++.. ....+++++ .+| + .+|.+.+ +++|.++|++
T Consensus 236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n-~~G~v~d----l~~I~~la~~ 308 (730)
T 1c4k_A 236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T-YDGTIYN----AHEVVKRIGH 308 (730)
T ss_dssp CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C-TTSEEEC----HHHHHHHHGG
T ss_pred CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C-CCCeecC----HHHHHHHHHH
Confidence 1111111100 0111 121111 23347777532 111114444 455 3 4788876 9999999999
Q ss_pred hCCEEEEcccccC-ccccC--C--CcccccccCCC-cc-ee--eeccccccCcccc-ccccCHHHH---------HhhcC
Q 011669 287 AGGLCIADEVQAG-FARTG--S--HFWGFEAHGVV-PD-IV--TMAKGIGNGIPLG-AVVTTPEIA---------EVLTR 347 (480)
Q Consensus 287 ~gillI~DEv~tg-fgr~G--~--~~~~~~~~~~~-pD-iv--t~sK~~g~G~pig-~v~~~~~~~---------~~l~~ 347 (480)
||+++|+||+|.+ ++..+ . .....+..+.. ++ ++ |++|+++ |++.| +++.+++.+ ..+..
T Consensus 309 ~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 309 LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999963 22211 0 01111122332 21 44 5679875 34443 443332211 11111
Q ss_pred C-CccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH-hHHhcCcee--eE----------------
Q 011669 348 R-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA-LKDKYGIIG--DV---------------- 404 (480)
Q Consensus 348 ~-~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~--~v---------------- 404 (480)
. ....+.+.++..+++..++++.+.. +++.++..++.+++++.|++ +. .+.... .+
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-g~~v~~p~~~~~~~~~~~~~~~~~~~ 466 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-MFRPFVPPVVNGKKWEDGDTEDMANN 466 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSEESSCSEETTEEGGGSCHHHHTTC
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-CeEEcccccccccccccccccccccc
Confidence 0 0122334556666666667776654 45677788888888888876 21 111100 00
Q ss_pred ---------------ec--cce-e-----EEEEEec---CCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC
Q 011669 405 ---------------RG--RGF-L-----LGVEFVT---DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP 458 (480)
Q Consensus 405 ---------------~g--~g~-~-----~~i~~~~---~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~ 458 (480)
.+ .+. + +.+.... ....-.........+.+.|.++||.+...+ ...+|++++
T Consensus 467 ~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s 544 (730)
T 1c4k_A 467 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMT 544 (730)
T ss_dssp GGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECC
T ss_pred chhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC--CCeEEEEeC
Confidence 00 111 1 2222210 000000001124668888999999997654 468999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 011669 459 LCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 459 ~~~t~~~id~~l~~l~~~l~ 478 (480)
..+|+++++.++++|.++.+
T Consensus 545 ~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 545 PAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 232
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.58 E-value=1.5e-13 Score=149.36 Aligned_cols=312 Identities=11% Similarity=0.035 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH 220 (480)
Q Consensus 141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~ 220 (480)
....++.+.+++.++.+ +.++++||+++||..++..... +++.||+.+++|+....+. ...+ ..
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~-~~~G------------~~ 268 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGL-MLTG------------AK 268 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHH-HHHC------------CE
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHH-HHcC------------CE
Confidence 45677788888888654 4566777778999999987643 6788999999886654442 2222 22
Q ss_pred EecCCCCcCCCCC----CC-hHHHHHHHHHHHHccCC------Cce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669 221 HALNPDPYRGVFG----AD-GEMYAKDVQDLIDFGTS------GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG 288 (480)
Q Consensus 221 ~~~~p~~~~~~~~----~d-~~~~~~~le~~i~~~~~------~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g 288 (480)
.+.++.... .|+ -+ .....++++++++.... .++ .+++++| +.+|.+.+ +++|.++|++||
T Consensus 269 ~v~v~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~ 341 (755)
T 2vyc_A 269 PVYMVPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTS 341 (755)
T ss_dssp EEEECCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTC
T ss_pred EEEEeCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcC
Confidence 221111110 111 10 00016788888864210 112 4555555 35788876 999999999999
Q ss_pred CEEEEcccccCccccCCCcccccc-cC--CC---cc---eeeeccccccCcc-ccccccCHH---H-HHhhcCC-Ccccc
Q 011669 289 GLCIADEVQAGFARTGSHFWGFEA-HG--VV---PD---IVTMAKGIGNGIP-LGAVVTTPE---I-AEVLTRR-NYFNT 353 (480)
Q Consensus 289 illI~DEv~tgfgr~G~~~~~~~~-~~--~~---pD---ivt~sK~~g~G~p-ig~v~~~~~---~-~~~l~~~-~~~~t 353 (480)
+++|+||+|.+.-..+..+..... .+ .. ++ +.+++|++++ ++ .|+++.+++ + ...+... ....+
T Consensus 342 ~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s 420 (755)
T 2vyc_A 342 DRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHAT 420 (755)
T ss_dssp SEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHTSC
T ss_pred CEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHhCC
Confidence 999999999743111101000111 22 11 11 2357798753 44 455655433 1 1111111 11233
Q ss_pred CCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHh--------cCce--eeEec--------------
Q 011669 354 FGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDK--------YGII--GDVRG-------------- 406 (480)
Q Consensus 354 ~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~--------~~~~--~~v~g-------------- 406 (480)
.+.|.+.+++..++++.+.. +++.++..++.++++++|+++..+ +..+ ..+.+
T Consensus 421 ~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (755)
T 2vyc_A 421 TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPT 500 (755)
T ss_dssp SSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccc
Confidence 44566777777777877654 367888899999999999887541 1100 01100
Q ss_pred -------------------------cc------eeEEEEEecCCCcC--CCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669 407 -------------------------RG------FLLGVEFVTDRQLK--TPAKAETLYIMDKMKEMGVLVGKGGFYGNVF 453 (480)
Q Consensus 407 -------------------------~g------~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i 453 (480)
.| ..+.+.......+. .........+.+.|.++||.+...+ .+.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~--~~~v 578 (755)
T 2vyc_A 501 KLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DFQI 578 (755)
T ss_dssp HHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEEC--SSEE
T ss_pred hhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecC--CCeE
Confidence 11 11122221100000 0001113567778888999886544 5789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 454 RITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 454 Ri~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
|+.+++..|+++++.++++|.++.+
T Consensus 579 ~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 579 MFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp EEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 233
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.40 E-value=1.8e-11 Score=131.11 Aligned_cols=310 Identities=12% Similarity=0.074 Sum_probs=177.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCCH-HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669 139 LNHAIADFAEALASKMPGNLKVVFFTNSG-TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT 217 (480)
Q Consensus 139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sG-seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~ 217 (480)
+.....++.+++++.++. +..+|+++| +.||..++..... +++.||+.+++|.....+ +.+++.
T Consensus 193 ~~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~-l~lsGa---------- 257 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHL-MMMSDV---------- 257 (715)
T ss_dssp TBTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHH-HHHSCC----------
T ss_pred CcHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHH-HHHcCC----------
Confidence 345678899999999964 455565555 6999888876543 678888888887554443 333332
Q ss_pred CeeEecCCCCcCCCCC----CCh-HHHHHHHHHHHHccCC-Cce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669 218 GVHHALNPDPYRGVFG----ADG-EMYAKDVQDLIDFGTS-GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (480)
Q Consensus 218 g~~~~~~p~~~~~~~~----~d~-~~~~~~le~~i~~~~~-~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil 290 (480)
..+.++... ..|+ .+. ....++++++++.... +.+ ++|+++| +..|.+.+ +++|.++|++++
T Consensus 258 --~pv~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~-- 326 (715)
T 3n75_A 258 --TPIYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS-- 326 (715)
T ss_dssp --EEEEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--
T ss_pred --EEEEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--
Confidence 111111111 1121 100 0016788888875321 111 4666666 66888877 999999998774
Q ss_pred EEEcccccCccccCCCcccccc--cCCCccee-----eeccccccCccccccccCHHH-HHhhcCC-CccccCCCcHHHH
Q 011669 291 CIADEVQAGFARTGSHFWGFEA--HGVVPDIV-----TMAKGIGNGIPLGAVVTTPEI-AEVLTRR-NYFNTFGGNPVCT 361 (480)
Q Consensus 291 lI~DEv~tgfgr~G~~~~~~~~--~~~~pDiv-----t~sK~~g~G~pig~v~~~~~~-~~~l~~~-~~~~t~~~~~~~~ 361 (480)
+|+||+|.+....+..+-+... .+..+|++ |++|++++--..|++.++.++ .+.+... ....|-+.+++.+
T Consensus 327 livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~ 406 (715)
T 3n75_A 327 IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIV 406 (715)
T ss_dssp EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHH
T ss_pred EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHH
Confidence 7999999743111211100111 12225643 578998641123566665432 1112211 1234556778888
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCc-eee------Eec-------------------cce-e-
Q 011669 362 AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI-IGD------VRG-------------------RGF-L- 410 (480)
Q Consensus 362 aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~------v~g-------------------~g~-~- 410 (480)
++..++++.++. +++.+++.++.++++++|+++....+. ... +.+ .+. +
T Consensus 407 AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~ 486 (715)
T 3n75_A 407 ASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYL 486 (715)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEE
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccC
Confidence 888888888763 467899999999999999988642110 000 000 000 0
Q ss_pred ----EEEEEecCCCcCC--CCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669 411 ----LGVEFVTDRQLKT--PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476 (480)
Q Consensus 411 ----~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~ 476 (480)
+.+....-..+.. ........+.+.|.++||.+--+. .+.+-+..+...|+++++.++++|.+.
T Consensus 487 Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d--~~~vl~l~s~g~~~~~~~~L~~aL~~~ 556 (715)
T 3n75_A 487 DPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF 556 (715)
T ss_dssp CTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE--TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC--CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1111100000000 001123456777888999986654 355667777888999999999998765
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.39 E-value=9.1e-11 Score=117.49 Aligned_cols=291 Identities=13% Similarity=0.079 Sum_probs=171.3
Q ss_pred CEEEEeCCHHHHHHHHHHHHHhh--cCCceEEEEcCCcccccccccccccCC-CccccccCCCeeEecCCCCcCCCCCCC
Q 011669 159 KVVFFTNSGTEANELAIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGAD 235 (480)
Q Consensus 159 ~~v~f~~sGseA~~~Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~~~g~~~~~~p~~~~~~~~~d 235 (480)
...|++|++|-++.+++..+... .+.++||+.+++ |-+...++.+.+.. .|..+... ++ .++-|
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~~d--------~~----~~~id 201 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRID-QKSCFKSMITAGFEPVVIENVLE--------GD----ELRTD 201 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEEEE--------TT----EEEEC
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecch-HHHHHHHHHHcCCeEEEEeeeec--------cc----ccCCC
Confidence 45788888887777777765443 134778876655 55555555555422 22111100 00 11123
Q ss_pred hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC
Q 011669 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315 (480)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~ 315 (480)
.++++++|++...+.+++|+..+....++.+.+ +++|.++|++||+++++||+|.+.-... ..+..+....
T Consensus 202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~-~~lp~sA~~~ 272 (501)
T 3hl2_A 202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKC-MHLIQQGARV 272 (501)
T ss_dssp ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHH-HHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhh-hhhHHHHHhc
Confidence 678999998764457888887765443444444 9999999999999999999986432111 0000111222
Q ss_pred -Ccceeeec--cccccCccccc-cc-c-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHH
Q 011669 316 -VPDIVTMA--KGIGNGIPLGA-VV-T-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSY 386 (480)
Q Consensus 316 -~pDivt~s--K~~g~G~pig~-v~-~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~ 386 (480)
..|+++.| |.+- .|+|. ++ . .+++++.+... +.++-++.|.. ..+.++..+-. .++.++..++.++
T Consensus 273 GrAD~vVqS~HK~ll--vpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~ 347 (501)
T 3hl2_A 273 GRIDAFVQSLDKNFM--VPVGGAIIAGFNDSFIQEISKM-YPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSY 347 (501)
T ss_dssp SCCCEEEEEHHHHHC--CCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEecccccce--eecCceEEEeCCHHHHHHHHHh-CCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888 6543 34432 33 3 56676665332 22334444432 22333333323 4567778888999
Q ss_pred HHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce---eeccCc-----------C--
Q 011669 387 LKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL---VGKGGF-----------Y-- 449 (480)
Q Consensus 387 l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~---v~~~~~-----------~-- 449 (480)
|+++|+++...++ .+.+.+.-..-+++.+..... ........+...|..++|- +.+.+. |
T Consensus 348 L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~ 424 (501)
T 3hl2_A 348 LSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS 424 (501)
T ss_dssp HHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred HHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence 9999999988664 233343333445565543211 1112345667777777653 322211 1
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669 450 ------GNVFRITPPLCFTKEDADYLVDVMDYSLSK 479 (480)
Q Consensus 450 ------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~ 479 (480)
..++-+.....++++|||.++++|++++.+
T Consensus 425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 246778878889999999999999999864
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.26 E-value=6.7e-10 Score=112.43 Aligned_cols=307 Identities=12% Similarity=0.035 Sum_probs=166.7
Q ss_pred HHHHHHHHhCCCC-CCEEEEeCCHH-HHHHHHHHHHHhhc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeE
Q 011669 145 DFAEALASKMPGN-LKVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH 221 (480)
Q Consensus 145 ~l~e~L~~~~~~~-~~~v~f~~sGs-eA~~~Alk~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~ 221 (480)
.+..++.+.++.+ ....+++|++| .++.++|..+|... +.+.||+.+. -|-+...++.+.+.......
T Consensus 102 ~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p~~v~-------- 172 (450)
T 3bc8_A 102 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEPVVIE-------- 172 (450)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEEEEEC--------
T ss_pred HHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCeeEEEE--------
Confidence 4444455544322 23468999998 66666666677532 2466777766 78777777776653211110
Q ss_pred ecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc
Q 011669 222 ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301 (480)
Q Consensus 222 ~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg 301 (480)
+.++.. ..+-| .+.|+++|++...+.+++|+..|.....|.+.+ +++|.++|++||+++++||+|.+.-
T Consensus 173 -~~~~~~--~~~id----~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 173 -NVLEGD--ELRTD----LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp -CEEETT--EEECC----HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred -eeecCc--cCCcC----HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 000000 11123 688999997653347888888876655555655 9999999999999999999986532
Q ss_pred ccCCCcccccccCC-Ccceeeec--cccccCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---
Q 011669 302 RTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD--- 374 (480)
Q Consensus 302 r~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~--- 374 (480)
+...++ ..+.... ..|++++| |.+......+.+.. +++..+.+... ...+-+.+|. ...+.++..+-.+
T Consensus 242 ~~~~~l-~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~Sps--L~l~~~l~~~G~~g~~ 317 (450)
T 3bc8_A 242 SKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASASPS--LDVLITLLSLGCSGYR 317 (450)
T ss_dssp HHHHHH-HHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCSHHH--HHHHHHHHHHHHHHHH
T ss_pred hhhHhH-HHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcccHH--HHHHHHHHHHHHHHHH
Confidence 211000 0011111 46888877 77765555566665 55555544321 1111222332 2222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc---eee------
Q 011669 375 KLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV---LVG------ 444 (480)
Q Consensus 375 ~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~------ 444 (480)
++.++..++.+++++.|+++..+++. +......+.-..+.+..-.. ....+...+.-.+...|+ -+.
T Consensus 318 ~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~---~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~ 394 (450)
T 3bc8_A 318 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG---HHDKAVTQLGSMLFTRQVSGARAVPLGNVQ 394 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS---SSSCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc---cccCCCceeEEEecCCCCccceeeeccccc
Confidence 23444467788999999988766642 11111111111222211000 000112334444555542 221
Q ss_pred -------cc------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669 445 -------KG------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478 (480)
Q Consensus 445 -------~~------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~ 478 (480)
.. -.....+-+..++..+++|+++++++|+++++
T Consensus 395 ~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~ 441 (450)
T 3bc8_A 395 TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 441 (450)
T ss_dssp EETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 10 01235666777788999999999999998764
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.59 E-value=4.1e-06 Score=83.75 Aligned_cols=330 Identities=12% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHh-cc--ccccccC-----ChHHHHHHH-HHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHhhc
Q 011669 115 HCHPYVVDSIVNQIKR-IQ--HSTVLYL-----NHAIADFAE-ALASKMPGNLKV---VFFTNSGTEANELAIMMARLYT 182 (480)
Q Consensus 115 h~~p~v~~A~~~~~~~-~~--~~~~~~~-----~~~~~~l~e-~L~~~~~~~~~~---v~f~~sGseA~~~Alk~ar~~~ 182 (480)
+..|.|.+|+-..+.. +. +...+|+ -+.++.|+. +..++++.+... =+=..||+.||.++......
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~-- 142 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ-- 142 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--
T ss_pred cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--
Confidence 4567888876554432 11 1111222 233445554 344566655441 12446999999988876654
Q ss_pred CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669 183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262 (480)
Q Consensus 183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep 262 (480)
++++|+.++-.. |....--..+... +......-+..++++... .+.....++++++.... +++.||+-.
T Consensus 143 PGD~ilg~~l~~-GGHltHg~~~~~~--~v~~sg~~~~~~~Y~vd~-----~t~~IDyd~~~~~A~~~---kPklIi~G~ 211 (490)
T 3ou5_A 143 PHDRIMGLDLPD-GGHLTHGYMSDVK--RISATSIFFESMPYKLNP-----KTGLIDYNQLALTARLF---RPRLIIAGT 211 (490)
T ss_dssp -CCCEECBC-------------------------------CBCEET-----TTTEECHHHHHHHHHHH---CCSEEEECC
T ss_pred CCCEEEecccCC-CCcccccccCCCc--ccccccccccccccccCC-----CCCcccHHHHHHHHhhc---CCCeEEECC
Confidence 778888765432 2221100000000 000000001111111100 01111157777777654 567787743
Q ss_pred cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCcceeeec--cccccCccccccccCH
Q 011669 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP 339 (480)
Q Consensus 263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~ 339 (480)
...+-+--+++++++|++.|++|++|-.| +|+--.| .+.-. .. ..|+||.+ |.|.| -|-|.|+.++
T Consensus 212 ------SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g--~~psP-~~-~ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 212 ------SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIPSP-FK-HADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp ------SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT--SSCCG-GG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred ------ccCccccCHHHHHHHHhhcccEEEechhhhhhhhccc--ccCCc-cc-cceEEeccccccccC-CCceEEEecc
Confidence 22233334899999999999999999887 4443333 21111 11 26899876 88864 2555666554
Q ss_pred ---------------HHHHhhcCCCccccCCCcHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669 340 ---------------EIAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGI 400 (480)
Q Consensus 340 ---------------~~~~~l~~~~~~~t~~~~~~~~aaa~a~-L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~ 400 (480)
++.+.+....+-+..+++-.-..||.|+ +.....+ ++.+++.++.+.|.+.|.+. .+.+
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~v 358 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYSL 358 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCee
Confidence 3444454433334455554444444433 3322222 45566666666666666554 2332
Q ss_pred eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCCC----CCHHHHHHH
Q 011669 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPLC----FTKEDADYL 469 (480)
Q Consensus 401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~~~id~~ 469 (480)
+..- -...++.+++..... ......+.|.+.||.+-... ...+-|||.-|.. ..++|++++
T Consensus 359 vsGg-TdnHlvLvDl~~~g~-------tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 359 VSGG-TDNHLVLVDLRPKGL-------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp GGGS-CSSSEEEEECGGGTC-------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred ecCC-CCceEEEEeccccCC-------CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 2110 012245566533221 13455667778899885321 1124699986643 567899888
Q ss_pred HHHHHHHHh
Q 011669 470 VDVMDYSLS 478 (480)
Q Consensus 470 l~~l~~~l~ 478 (480)
.+.|.+++.
T Consensus 431 A~~I~~~l~ 439 (490)
T 3ou5_A 431 VDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 237
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=57.87 E-value=15 Score=28.27 Aligned_cols=55 Identities=7% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccc
Q 011669 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202 (480)
Q Consensus 146 l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~ 202 (480)
+.+.+.+.++.+-..|++|.+|.-+..++-.+... |-.+|..++|++.+|.....
T Consensus 41 l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~~g~ 95 (106)
T 3hix_A 41 LVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKAIGG 95 (106)
T ss_dssp HHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHT--TCSCEEECTTHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCeEEEEECCCChHHHHHHHHHHc--CCcCEEEecCCHHHHHHCCC
Confidence 44455445555556788889998877766655433 66678889999987765443
No 238
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=51.04 E-value=26 Score=26.86 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccc
Q 011669 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (480)
Q Consensus 144 ~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~ 200 (480)
.++.+.+.+ ++.+-.-|++|.+|..+..++-.+... |-++|..++|++.+|...
T Consensus 46 ~~l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~~ 99 (108)
T 1gmx_A 46 DTLGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQ--GYDVVYSIDGGFEAWQRQ 99 (108)
T ss_dssp HHHHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHH--TCSSEEEETTHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHc--CCceEEEecCCHHHHHHh
Confidence 345555555 454556788899998877776665544 667788999999887654
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=46.89 E-value=18 Score=31.71 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=29.5
Q ss_pred ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
..++||+|-..+..|...- +.++.+++++||+.+|.
T Consensus 159 ~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 6799999987455565555 89999999999999884
No 240
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=46.60 E-value=20 Score=29.27 Aligned_cols=57 Identities=7% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccccc
Q 011669 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA 204 (480)
Q Consensus 146 l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~ 204 (480)
+.+.+...++.+-..|++|.+|.-|..++-.+... |-+.|..++|++.+|......+
T Consensus 45 l~~~~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~~g~p~ 101 (141)
T 3ilm_A 45 LVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKAIGGPT 101 (141)
T ss_dssp HHHHHHTTSCTTSEEEEECSSHHHHHHHHHHHHHT--TCCSEEECTTHHHHHHHTTCCE
T ss_pred HHHHHHhcCCCCCeEEEEECCChHHHHHHHHHHHc--CCCCEEEecCHHHHHHHCCCCc
Confidence 44455455555556788888998887766655443 6667888999998877654443
No 241
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=44.19 E-value=25 Score=27.06 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccc
Q 011669 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG 203 (480)
Q Consensus 144 ~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~ 203 (480)
.++.+.+.+. +.+...|++|.+|.-+..++-.+... |- +|..++|++.+|......
T Consensus 43 ~~l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~--G~-~v~~l~GG~~~W~~~~~~ 98 (108)
T 3gk5_A 43 SELREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQL--GL-NIVDVEGGIQSWIEEGYP 98 (108)
T ss_dssp HHHHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTT--TC-CEEEETTHHHHHHHTTCC
T ss_pred HHHHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHc--CC-CEEEEcCcHHHHHHcCCC
Confidence 3454554443 44556788999998887666554332 55 899999999887655443
No 242
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=43.33 E-value=20 Score=28.67 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=32.3
Q ss_pred hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccc
Q 011669 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (480)
Q Consensus 153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~ 199 (480)
.++.+...|++|.+|.-+..++..+... |-++|..++|++.+|..
T Consensus 78 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 122 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGRSIKATTDLLHA--GFTGVKDIVGGYSAWAK 122 (129)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHH--HCCSEEEEECCHHHHHH
T ss_pred hCCCCCeEEEECCCCcHHHHHHHHHHHc--CCCCeEEeCCcHHHHHh
Confidence 3454556788999998887777665543 55678888999987654
No 243
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=42.63 E-value=30 Score=30.39 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=28.4
Q ss_pred ceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 254 HVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 254 ~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
..++||+|-+ .+..|...- +.++.+++++||+.+|.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 6789999982 334555554 89999999999999984
No 244
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=39.11 E-value=80 Score=22.61 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=31.6
Q ss_pred HHHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669 144 ADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197 (480)
Q Consensus 144 ~~l~e~L~~~~-~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~ 197 (480)
.++.+.+.+.- +.+..-|++|.+|..+..++-.+... |-+.+... +++..+
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l-GG~~~w 78 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEM--GYTHVENA-GGLKDI 78 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHT--TCSSEEEE-EETTTC
T ss_pred HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHc--CCCCEEec-cCHHHH
Confidence 44555666552 33445788889998887776665443 55566655 666544
No 245
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=38.27 E-value=35 Score=30.28 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=31.2
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCC---Ccce-eCCCChHHHHHHHHHHhCCEEE
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGV---GGII-ELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~---~G~~-~~~~~~l~~l~~l~~~~gillI 292 (480)
.+.|+++++.........|++.|.... .|.+ .....|-+.++++|+++|+.+|
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 345555554321123456777775321 2322 2334567889999999998777
No 246
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=37.37 E-value=45 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccc
Q 011669 157 NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (480)
Q Consensus 157 ~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~ 199 (480)
+-..|++|.+|.-+..++..+... |-.+|..++|++-++..
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 120 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEA--GITPAYNVLDGFEGHLD 120 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHT--TCCSEEEETTTTTCCCC
T ss_pred CCEEEEEcCCChhHHHHHHHHHHc--CCcceEEEcCChhhhhh
Confidence 445788899997776655554433 66679999999977654
No 247
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=35.93 E-value=2.7e+02 Score=25.76 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (480)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 294 (480)
|.+...++|++.++. ....+|-+.+..+ | ..+....+..+.+.|.++|+.+.+-
T Consensus 108 ~~~~a~~el~r~~~~---~G~~Gv~l~~~~~--~-~~l~d~~~~p~~~~~~e~g~pv~iH 161 (312)
T 3ij6_A 108 NIESACKVISSIKDD---ENLVGAQIFTRHL--G-KSIADKEFRPVLAQAAKLHVPLWMH 161 (312)
T ss_dssp CHHHHHHHHHHHHHC---TTEEEEEEESEET--T-EETTSTTTHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHh---CCCceEeccCCCC--C-CCCCCccHHHHHHHHHHcCCeEEEc
Confidence 333345778887753 2567777766422 3 3345566789999999999988764
No 248
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=35.24 E-value=38 Score=30.19 Aligned_cols=36 Identities=8% Similarity=-0.080 Sum_probs=29.4
Q ss_pred CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
-..++||||-++-. |.... +.++.+++++||+.+|.
T Consensus 177 l~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 177 LVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp SCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEE
Confidence 36899999988655 55554 89999999999999984
No 249
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=35.03 E-value=42 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=28.3
Q ss_pred ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
..++||+|-.+ ..|.... +.++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~~-~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELTN-DDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBBC-TTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEeC-CCCCccC----HHHHHHHHHHcCCCEEE
Confidence 67899999774 4455554 89999999999999984
No 250
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=28.90 E-value=57 Score=24.37 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccc
Q 011669 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (480)
Q Consensus 155 ~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~ 200 (480)
+.+-..|++|.+|.-+..++-.+... |- ++..++|++.+|...
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~~ 96 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQN--GV-NAVNVEGGMDEFGDE 96 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTT--TC-EEEEETTHHHHHCSS
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHC--CC-CEEEecccHHHHHHc
Confidence 44456788888998877666655432 55 888999999876543
No 251
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.76 E-value=50 Score=27.38 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=30.0
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHH-HHHHHhCCEEE-Eccccc
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY-KSIKKAGGLCI-ADEVQA 298 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~-~l~~~~gillI-~DEv~t 298 (480)
.+.|.++++.. ++..|+++-+.+..|.........++.. .+++++++.++ +||-+|
T Consensus 44 ~~~l~~li~~~---~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 44 LSRLSELIKDY---TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHHHTTS---EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHc---CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 57888888753 5666666633343343321111112222 44455677655 799876
No 252
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=28.66 E-value=2.6e+02 Score=25.63 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
.+|.++++.....++.+|++||..++ +-+..|+++.|+-++
T Consensus 224 ~~l~~l~~~ik~~~v~~If~e~~~~~-----------~~~~~ia~~~g~~v~ 264 (291)
T 1pq4_A 224 QELKQLIDTAKENNLTMVFGETQFST-----------KSSEAIAAEIGAGVE 264 (291)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCC-----------HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCh-----------HHHHHHHHHcCCeEE
Confidence 44444444322457888999886542 222446777777654
No 253
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.43 E-value=1.4e+02 Score=27.39 Aligned_cols=125 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccc
Q 011669 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (480)
Q Consensus 119 ~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~ 198 (480)
.+++++.+.+.+.......++......+.++| ++++.-++......++..++++.++| ++.
T Consensus 132 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L------------------~~Ld~~~~~~l~~~~~~~~v~~H~af-~Yf 192 (286)
T 3gi1_A 132 EEAVNIAKELGRLDPKHKDSYTKNAKAFKKEA------------------EQLTEEYTQKFKKVRSKTFVTQHTAF-SYL 192 (286)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTCSCCEEEEEESCC-HHH
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhcCCCCEEEEECCch-HHH
Q ss_pred ccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHH
Q 011669 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278 (480)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~ 278 (480)
.....+.-....... .+.+....+|.++++.....++.+|++|+..+. +
T Consensus 193 ~~~yGl~~~~~~~~~--------------------~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-----------~ 241 (286)
T 3gi1_A 193 AKRFGLKQLGISGIS--------------------PEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-----------K 241 (286)
T ss_dssp HHHTTCEEEEEECSC--------------------C---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-----------H
T ss_pred HHHCCCeEeeccccC--------------------CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-----------H
Q ss_pred HHHHHHHHhCCEEEE
Q 011669 279 AVYKSIKKAGGLCIA 293 (480)
Q Consensus 279 ~l~~l~~~~gillI~ 293 (480)
-+..++++.|+-++.
T Consensus 242 ~~~~la~~~g~~v~~ 256 (286)
T 3gi1_A 242 IAHAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHHHTTTCEEEE
T ss_pred HHHHHHHHhCCeEEE
No 254
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=28.42 E-value=1.9e+02 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=31.5
Q ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccc
Q 011669 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG 203 (480)
Q Consensus 154 ~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~ 203 (480)
++.+-..|++|.+|.-|..++-.+... |-.. ..++|++.+|....+.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~-~~l~GG~~~W~~~g~p 99 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHEL--GYTP-YYLEGNVYDFEKYGFR 99 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHT--TCCC-EEEESCGGGTTTTTCC
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHC--CCCE-EEecCCHHHHHHCCCc
Confidence 344456788899998877666555433 5555 7788999887654443
No 255
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=28.37 E-value=78 Score=25.19 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=31.9
Q ss_pred HHHHHHHhC--CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669 146 FAEALASKM--PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (480)
Q Consensus 146 l~e~L~~~~--~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG 196 (480)
+.+.+.+.+ +.+-..|++|.+|.-+..+|-.+... |-.+|..+.++|.|
T Consensus 61 ~~~~l~~~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~--G~~~v~~l~GG~~~ 111 (134)
T 1vee_A 61 FLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALN--GFKSAYAIKDGAEG 111 (134)
T ss_dssp HHHHHHTTCSCGGGCEEEEECSSSTTHHHHHHHHHHH--TCSEEEECTTTTTS
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHc--CCcceEEecCCccC
Confidence 344454444 22345688888998776665554433 66789999999965
No 256
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=26.28 E-value=37 Score=25.10 Aligned_cols=20 Identities=15% Similarity=-0.107 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCEEEEccc
Q 011669 277 LPAVYKSIKKAGGLCIADEV 296 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv 296 (480)
-.+|++++++||+.++.|.-
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 57899999999999999974
No 257
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=25.67 E-value=2.4e+02 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=22.2
Q ss_pred EEEEcccC-CCCcceeCCCChHHHHHHHHHHh-CCEEEEc
Q 011669 257 GFLSESIQ-GVGGIIELAPGYLPAVYKSIKKA-GGLCIAD 294 (480)
Q Consensus 257 ~vi~epi~-~~~G~~~~~~~~l~~l~~l~~~~-gillI~D 294 (480)
.|++.+++ |-+|.. ..+.-+++|+++.+.. +..+.+|
T Consensus 137 ~Vl~msv~pGf~Gq~-f~~~~l~ki~~lr~~~~~~~I~Vd 175 (228)
T 3ovp_A 137 MALVMTVEPGFGGQK-FMEDMMPKVHWLRTQFPSLDIEVD 175 (228)
T ss_dssp EEEEESSCTTTCSCC-CCGGGHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEeeecCCCCCcc-cCHHHHHHHHHHHHhcCCCCEEEe
Confidence 45666654 445543 4566678888887664 4555555
No 258
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=25.25 E-value=73 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEe-CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccc
Q 011669 142 AIADFAEALASKMPGNLKVVFFT-NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (480)
Q Consensus 142 ~~~~l~e~L~~~~~~~~~~v~f~-~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~ 199 (480)
...++.+.+.+.-+.+-..|++| .+|.-|..++-.+... |- +|..++|++.+|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~ 129 (134)
T 3g5j_A 74 KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSL--GV-NVYQLEGGYKAYRN 129 (134)
T ss_dssp GHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHT--TC-CCEEETTHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHc--CC-ceEEEeCcHHHHHH
Confidence 33456666655432214566677 4787777666554332 55 78888999877653
No 259
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.25 E-value=92 Score=22.82 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=27.0
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccc
Q 011669 158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (480)
Q Consensus 158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~ 198 (480)
..-|++|.+|.-+..++-.+... |-+ +..++|++.+|.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~--G~~-v~~l~GG~~~W~ 91 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE--GYE-AMSLEGGLQALT 91 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH--TCC-EEEETTGGGCC-
T ss_pred CCEEEEcCCCChHHHHHHHHHHc--CCc-EEEEcccHHHHH
Confidence 45788889998777666655443 556 888899987764
No 260
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=24.79 E-value=76 Score=28.33 Aligned_cols=37 Identities=8% Similarity=-0.095 Sum_probs=29.1
Q ss_pred CceEEEEEcccCCC----------CcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 253 GHVAGFLSESIQGV----------GGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 253 ~~~a~vi~epi~~~----------~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
-..++||+|-++-. .|...- +.++.+++++||+.+|.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 36789999977541 455555 89999999999999984
No 261
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=24.71 E-value=69 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccc
Q 011669 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201 (480)
Q Consensus 155 ~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~ 201 (480)
+.+-..|++|.+|.-+..++-.+... |- ++..++|++.+|....
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~~g 97 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEAN--GI-DAVNVEGGMHAWGDEG 97 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTT--TC-EEEEETTHHHHHCSSS
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHC--CC-CeEEeCCCHHHHHHCC
Confidence 44445788888997777766655433 55 8889999998775443
No 262
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=24.48 E-value=1.4e+02 Score=27.55 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHhhcC
Q 011669 157 NLKVVFFTNSGTEANELAIMMARLYTG 183 (480)
Q Consensus 157 ~~~~v~f~~sGseA~~~Alk~ar~~~~ 183 (480)
+.+.++.+++.-+....++.++..+.+
T Consensus 30 gV~~~v~~g~~~~~~~~~~~la~~~~~ 56 (287)
T 3rcm_A 30 GVTQMLLTGTSLAVSEQALELCQQLDA 56 (287)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCC
Confidence 567777777778888889999888753
No 263
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=24.17 E-value=4.4e+02 Score=24.57 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc--CCcccccccccccccCCCccccccCCCeeE
Q 011669 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR--NAYHGNAAGTMGATAQSNWKFNVVQTGVHH 221 (480)
Q Consensus 144 ~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~--~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~ 221 (480)
..+++.-+++++. ..+++|-|.|..+...|+.|.....+-+|++.+ |.+.|... +..+. ..|++.
T Consensus 109 ~~I~~~~~~~I~~--g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~l-a~~L~----------~~gI~v 175 (315)
T 3ecs_A 109 NKIADLCHTFIKD--GATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKM-AKALC----------HLNVPV 175 (315)
T ss_dssp HHHHHHHGGGCCT--TEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHH-HHHHH----------TTTCCE
T ss_pred HHHHHHHHHHcCC--CCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHH-HHHHH----------HcCCCE
Confidence 4455555666653 346777777778888887765433344566553 33444332 22221 124444
Q ss_pred ecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 222 ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 222 ~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
...+| ..+-.++... +...+=.+.+..+||.+. .-+- -.+.-+|+.||+.+++
T Consensus 176 tli~D--------------sa~~~~m~~v---d~VivGAd~i~~nG~v~n-kiGT-~~iAl~Ak~~~vP~~V 228 (315)
T 3ecs_A 176 TVVLD--------------AAVGYIMEKA---DLVIVGAEGVVENGGIIN-KIGT-NQMAVCAKAQNKPFYV 228 (315)
T ss_dssp EEECG--------------GGHHHHGGGC---SEEEEECSEECTTSCEEE-ETTH-HHHHHHHHHTTCCEEE
T ss_pred EEEeh--------------hHHHHHHHhC---CEEEECceEEecCCCeee-hhhh-HHHHHHHHHhCCCEEE
Confidence 33332 1222233311 222333455666676654 3333 3567789999999885
No 264
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=23.46 E-value=2.8e+02 Score=24.88 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEcccC-CCCcceeCCCChH---HHHHHHHHHh--CCEEEEc
Q 011669 257 GFLSESIQ-GVGGIIELAPGYL---PAVYKSIKKA--GGLCIAD 294 (480)
Q Consensus 257 ~vi~epi~-~~~G~~~~~~~~l---~~l~~l~~~~--gillI~D 294 (480)
.|++.+++ |-+|.- .-+.-+ +++++++.++ ++.+.+|
T Consensus 159 ~VlvMsV~PGfgGQ~-fi~~~l~KI~~lr~~~~~~~~~~~I~VD 201 (246)
T 3inp_A 159 RVLIMSVNPGFGGQK-FIPAMLDKAKEISKWISSTDRDILLEID 201 (246)
T ss_dssp EEEEECSCTTC--CC-CCTTHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred EEEEeeecCCCCCcc-cchHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 45565654 445532 334444 4555555554 4777777
No 265
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15
Probab=22.93 E-value=4.3e+02 Score=24.51 Aligned_cols=51 Identities=4% Similarity=-0.093 Sum_probs=33.9
Q ss_pred HHHHHHHHHccCCCceEEEEEcccCCC--CcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669 240 AKDVQDLIDFGTSGHVAGFLSESIQGV--GGIIELAPGYLPAVYKSIKKAGGLCIA 293 (480)
Q Consensus 240 ~~~le~~i~~~~~~~~a~vi~epi~~~--~G~~~~~~~~l~~l~~l~~~~gillI~ 293 (480)
.++|++.++. ....+|-+.+.... .+........+..+.++|.++|+.+++
T Consensus 125 ~~eL~r~~~~---~g~~Gv~l~~~~~~~~~~~~~l~d~~~~p~~~~a~e~~lpv~i 177 (350)
T 2gwg_A 125 IPELEKCVKE---YGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMI 177 (350)
T ss_dssp HHHHHHHHHT---SCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhc---cCCeEEEECCCCCCccCCCCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 5778888753 25667766553211 111234566789999999999999986
No 266
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=22.57 E-value=67 Score=25.66 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccc
Q 011669 157 NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (480)
Q Consensus 157 ~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~ 200 (480)
+...|++|.+|.-+-.++..+... |-.+|..++|++.+|...
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~~ 132 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSH--GYSNTSLYPGSMNDWVSH 132 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTT--TCCSEEECTTHHHHHHHT
T ss_pred CCeEEEECCCCchHHHHHHHHHHc--CCCCeEEeCCcHHHHHHc
Confidence 345678888998777666554432 666788889998876544
No 267
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=22.48 E-value=1e+02 Score=27.98 Aligned_cols=54 Identities=4% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHh-CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccc
Q 011669 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (480)
Q Consensus 144 ~~l~e~L~~~-~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~ 198 (480)
.++.+.+.+. ++.+-..|++|.+|.-|-.++..+. ...|-.+|..++|++.+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~-~~~G~~~v~~l~GG~~~W~ 273 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLK-YLLGYPHVKNYDGSWTEWG 273 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHH-TTSCCSCEEEESSHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHH-HHcCCCCcceeCchHHHHh
Confidence 4566666553 3334457788889987766555443 1236668889999998875
No 268
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=21.70 E-value=50 Score=25.21 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCEEEEcccc
Q 011669 277 LPAVYKSIKKAGGLCIADEVQ 297 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~ 297 (480)
-.+|++++++||+.++.|.--
T Consensus 44 A~~I~~~A~e~gVPi~e~~~L 64 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVPL 64 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCeEEECHHH
Confidence 578999999999999999753
No 269
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=21.68 E-value=1.3e+02 Score=27.23 Aligned_cols=55 Identities=7% Similarity=0.237 Sum_probs=36.8
Q ss_pred HHHHHHHHHh-CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccc
Q 011669 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (480)
Q Consensus 144 ~~l~e~L~~~-~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~ 199 (480)
.++.+.+.+. .+.+-..|++|.+|.-|-.++..+.. ..|-.+|..++|++..|..
T Consensus 212 ~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~-~~G~~~v~~l~GG~~~W~~ 267 (277)
T 3aay_A 212 EELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRE-LLGHQNVKNYDGSWTEYGS 267 (277)
T ss_dssp HHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHT-TSCCSCEEEESSHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHH-HcCCCcceeeCchHHHHhc
Confidence 4566666653 34445678889999887766554432 1366779899999987754
No 270
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.46 E-value=51 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCEEEEcccc
Q 011669 277 LPAVYKSIKKAGGLCIADEVQ 297 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~ 297 (480)
-.+|+++++++|+.++.|.--
T Consensus 29 A~~I~e~A~e~gVPi~e~~~L 49 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVKL 49 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEECHHH
Confidence 578999999999999999743
No 271
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=21.22 E-value=1.6e+02 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHhCCEEE
Q 011669 275 GYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 275 ~~l~~l~~l~~~~gillI 292 (480)
.|-+.++++|+++++.+|
T Consensus 150 ~~n~~~~~~a~~~~v~~v 167 (240)
T 3mil_A 150 IYSDALAKLANEEKVPFV 167 (240)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhCCeEE
Confidence 445677889999998877
No 272
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=20.90 E-value=85 Score=23.81 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccc
Q 011669 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202 (480)
Q Consensus 154 ~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~ 202 (480)
++.+..-|++|.+|.-+..+|-.+... |- +.+.+.|++.+|....+
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~--G~-~~~~l~GG~~~W~~~g~ 98 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEAN--GI-DAVNVEGGMHAWGDEGL 98 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTT--TC-EEEEETTHHHHHCSSSC
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHc--CC-CEEEecChHHHHHHCCC
Confidence 344456778888998877766554332 44 55678999988765433
No 273
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=20.85 E-value=1.8e+02 Score=27.78 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCCCceEEEEEcccCCCC-----cce-eCCCChHHHHHHHHHHhCCEEE
Q 011669 237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVG-----GII-ELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 237 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~-----G~~-~~~~~~l~~l~~l~~~~gillI 292 (480)
+.+.+.++++++.........|++.|..... |.+ ..-..+-+.++++|+++++.+|
T Consensus 252 ~~~~~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~i 313 (375)
T 2o14_A 252 AEFKEVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLI 313 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEE
Confidence 3445566666654322345677777754321 111 1124566788899999998776
No 274
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=20.74 E-value=40 Score=28.35 Aligned_cols=55 Identities=7% Similarity=0.005 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHccCCCceEEEEEcccCCC-CcceeCCCChHHHHHHHHHHhCCEEE
Q 011669 237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 237 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI 292 (480)
+.+.+.++++++.........+++.+..+. .|. .....+-+.++++|+++|+.+|
T Consensus 82 ~~~~~~l~~li~~~~~~~~~vil~~~~~p~~~~~-~~~~~~n~~~~~~a~~~~v~~i 137 (190)
T 1ivn_A 82 QQTEQTLRQILQDVKAANAEPLLMQIRLPANYGR-RYNEAFSAIYPKLAKEFDVPLL 137 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGCH-HHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeccCCcchhH-HHHHHHHHHHHHHHHHcCCeEE
Confidence 334455665555321223456666542221 111 1112345668899999988766
No 275
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.63 E-value=87 Score=25.07 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccccc
Q 011669 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA 204 (480)
Q Consensus 154 ~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~ 204 (480)
++.+-..|++|.+|.-+..++..+... |-.+|..++|++.+|......+
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~W~~~g~p~ 127 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREY--GFKTIYNSEGGMDKWLEEGLPS 127 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHH--TCSCEEEESSCHHHHHHTTCCE
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHc--CCcceEEEcCcHHHHHHCCCCc
Confidence 344556788899998777766555433 6668999999998876655443
No 276
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=20.60 E-value=54 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.093 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCEEEEcccc
Q 011669 277 LPAVYKSIKKAGGLCIADEVQ 297 (480)
Q Consensus 277 l~~l~~l~~~~gillI~DEv~ 297 (480)
-.+|+++++++|+.++.|.--
T Consensus 29 A~~I~e~A~e~gVPi~e~~~L 49 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIKL 49 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCeecCHHH
Confidence 578999999999999999743
No 277
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=20.25 E-value=55 Score=27.78 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc----eeCCCChHHHHHHHHHHhCCEEE
Q 011669 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI----IELAPGYLPAVYKSIKKAGGLCI 292 (480)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~----~~~~~~~l~~l~~l~~~~gillI 292 (480)
.+.+.+.++++++.........|++.|...+... ...-..+-+.++++|+++|+.+|
T Consensus 112 ~~~~~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~v 172 (216)
T 3rjt_A 112 IDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFV 172 (216)
T ss_dssp HHHHHHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3444566666666432235667777654322110 00112356778889999997665
No 278
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.20 E-value=2.1e+02 Score=27.22 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC-C---CCCC----EEEEeCCHHHHHHHHHHHHHhhcC-----
Q 011669 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM-P---GNLK----VVFFTNSGTEANELAIMMARLYTG----- 183 (480)
Q Consensus 117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~-~---~~~~----~v~f~~sGseA~~~Alk~ar~~~~----- 183 (480)
+|++.+-+.+.+..+ ...+.++.+.|...+ | .+.. .|.-..||+||...|=.+.|.|..
T Consensus 67 D~e~~~~a~~e~~~l--------~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~ 138 (354)
T 3d5a_X 67 DPELKEMAKAEREAL--------LARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEM 138 (354)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 466665555544443 233444554444443 3 2223 234467899999999988888752
Q ss_pred --CceEEEEcCCcc-cccccccccccCCCccccccCCCeeEe
Q 011669 184 --CNDIISLRNAYH-GNAAGTMGATAQSNWKFNVVQTGVHHA 222 (480)
Q Consensus 184 --~~~ii~~~~~yh-G~~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (480)
+-.|+....+-. |....++.+.|...|.+--...|++.+
T Consensus 139 g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRv 180 (354)
T 3d5a_X 139 GFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRV 180 (354)
T ss_dssp TCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEE
T ss_pred CCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEE
Confidence 345665554444 444555566665444322223577654
Done!