RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011669
(480 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 551 bits (1422), Expect = 0.0
Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 12/427 (2%)
Query: 62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVV 121
+ L P+ + K +++D +GR LD G + GHCHP +V
Sbjct: 8 TFWRNARHHLVRYGGTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIV 65
Query: 122 DSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY 181
I ++ H L+ + D A LA+ P L ++G E+NE AI MA+L
Sbjct: 66 SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV 125
Query: 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYRGVFGADGE--- 237
TG +I+ ++HG AT + K G P YR F +G
Sbjct: 126 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDY 185
Query: 238 -MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
DLID +SG++A F++E I GGIIEL GY+ A+ + + G L I DE
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTF 354
Q G RTG + + GV PDI+T++K +G G+PL A+VT+ I E Y + T
Sbjct: 246 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTH 304
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
+P+ A G VL V+Q+D L A+V+G L+ L L +++ IGDVRGRG LLGVE
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE 364
Query: 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVG--KGGFYGNVFRITPPLCFTKEDADYLVDV 472
V DR+ K PA I + +G+ + + G VFRI PPL ++++ D + +
Sbjct: 365 IVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424
Query: 473 MDYSLSK 479
+ ++ +
Sbjct: 425 LGQAIER 431
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 541 bits (1396), Expect = 0.0
Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 7/428 (1%)
Query: 57 GPS-ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
G + + + + PL + G+ L +ENGR +D G G+
Sbjct: 1 GSHMTKALYDRDGAAIGNLQKLRFF-PLAISGGRGARLIEENGRELIDLSGAWGAASLGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN-LKVVFFTNSGTEANEL 173
HP +V ++ +T+L ++A AE L + PG ++F +SG++ANE
Sbjct: 60 GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEA 119
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
A TG + +I+ AYHG G+M + S G+ PDPYR
Sbjct: 120 AYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRN 179
Query: 234 -ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
G+ + + + +G + E IQ GG+I G+L + G L +
Sbjct: 180 DPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV 239
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
DEV+ G AR+G FE G VPDI+ + KG+G G+PL AV+ EI + +
Sbjct: 240 CDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQ 297
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
T GNP+ AAG AVL+ I +D L A G L++ L+ L ++ +IGD+RGRG G
Sbjct: 298 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 357
Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
+E V DRQ + PA+AET ++ + ++G++V G GNV TPPL T+ D +D+
Sbjct: 358 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 417
Query: 473 MDYSLSKM 480
+D + S++
Sbjct: 418 LDRAFSEL 425
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 439 bits (1132), Expect = e-152
Identities = 149/451 (33%), Positives = 215/451 (47%), Gaps = 13/451 (2%)
Query: 33 SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQY 92
S+++ L + P GP + + +R+ +S + P+ VD
Sbjct: 3 GSMTDITYRLAQKRTIVTPLP---GPRSGALAERRRAAVSAGVGSTA--PVYAVDADGGV 57
Query: 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALA 151
+ D +G ++D GIA G HP V +I +Q H+ + + AE L
Sbjct: 58 IVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLN 117
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210
+ PG+ K NSG EA E AI +ARL TG +++ NAYHG TM TA+S
Sbjct: 118 ALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMP 177
Query: 211 ---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGHVAGFLSESIQGV 266
+F V+ P R G GE A+ I+ + +A + E IQG
Sbjct: 178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGE 237
Query: 267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI 326
GG I APG+L + + G + IADEVQ GFARTG ++ E G+VPDIVTMAKGI
Sbjct: 238 GGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGI 296
Query: 327 GNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386
G+PL AV E+ + + T+GGNPV AA A L V+++ L A + +
Sbjct: 297 AGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEAS 356
Query: 387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG 446
+ RL+AL ++ IIG+VRGRG +L +E V P A T I + GVL+
Sbjct: 357 VTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT-LEPDAALTKSIAAEALSQGVLILTC 415
Query: 447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
G +GNV R+ PPL + D + + +
Sbjct: 416 GTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 432 bits (1112), Expect = e-149
Identities = 134/453 (29%), Positives = 205/453 (45%), Gaps = 18/453 (3%)
Query: 36 SEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD 95
+ + + P GP + ++ ++ T ++ + P+ V + D
Sbjct: 3 GSMVSHPEQSRHLATAIP---GPRSQALIDRKGTAVARGVGTTM--PVYAVRAGGGIVED 57
Query: 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM 154
+G R +D GIA G+ P VV+++ +Q+ H+ + + E L
Sbjct: 58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLT 117
Query: 155 PGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW--- 210
P K NSG+EA E A+ +AR +T +++ +AYHG TM TA+
Sbjct: 118 PVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177
Query: 211 KFNVVQTGVHHALNPDPYRGVFG-----ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQ 264
F ++ A P+R DGE+ AK +ID +A + E IQ
Sbjct: 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237
Query: 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK 324
G GG I A G+LP + +K + IADEVQ GFARTG + E G+ PD++ AK
Sbjct: 238 GEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAK 296
Query: 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG 384
GI G+PL AV EI + T+GGNP+ AA A ++ I+ + L A +
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIE 356
Query: 385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG 444
+K+RL L+ + IGDVRGRG ++ +E V P T + GV+V
Sbjct: 357 KIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT-TEPDADLTKALCAGAHAAGVIVL 415
Query: 445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
G YGNV R PPL + + +DV++ L
Sbjct: 416 SCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 417 bits (1075), Expect = e-144
Identities = 122/426 (28%), Positives = 200/426 (46%), Gaps = 10/426 (2%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
S E++ +R + + ++ P+ + ++D GR YLD GGIA + GH HP
Sbjct: 3 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNL-KVVFFTNSGTEANELAIM 176
VV ++ Q+K++ H+ L + + E + K+PG+ K +G+EA E A+
Sbjct: 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFG 233
+AR T + I+ AYHG T+ T + N ++ V+ AL P P G+
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D + + +A + E +QG GG +P ++ + + G + IA
Sbjct: 181 DDAIASIHRI--FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNT 353
DEVQ+G RTG + E GV PD+ T AK I G PL V E+ + + T
Sbjct: 239 DEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413
+ GNP+ A VLKV +++ L A+ +G LK+ L A+ +K+ IGDVRG G ++ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
E D P T I+ + ++ G+++ G Y NV RI PL ++++
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
Query: 474 DYSLSK 479
+
Sbjct: 418 SQCFDE 423
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 354 bits (912), Expect = e-119
Identities = 126/423 (29%), Positives = 208/423 (49%), Gaps = 26/423 (6%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
+ ++ D G+RYLD G+ V G+ + ++ Q++ + + + +
Sbjct: 32 TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHE 91
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYH 195
AE L + G + FF+NSG+EANE A +AR Y +S YH
Sbjct: 92 PAIKLAEKLNEWLGGEYVI-FFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYH 150
Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDF 249
GN TM AT Q+ + + +G H PD YR +Y K+V ++ +
Sbjct: 151 GNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTW 210
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
S +A F+ E I GGI+ Y+ AV+++ +K G L I+DEV GF RTG +G
Sbjct: 211 ELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFG 269
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL---TRRNYFN---TFGGNPVCTA 362
F + V PDI+TMAKGI + +PL A EI E +F TFGGNP A
Sbjct: 270 FMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
L++I+ + L + +GS L E+L ++ ++GD+RG+G L+G+E V D++ K
Sbjct: 330 LALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 423 TP-AKAETLYIMDKMKEMGVLVGKGG----FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
P + +++ KE G+++G+ G Y N+ + PPL + E+ +++ + ++
Sbjct: 390 EPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAM 449
Query: 478 SKM 480
++
Sbjct: 450 ERI 452
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 342 bits (879), Expect = e-114
Identities = 125/407 (30%), Positives = 196/407 (48%), Gaps = 34/407 (8%)
Query: 75 LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
+Y+K L +V G+ ++D G Y+D GG GH +P VV+++ Q + +
Sbjct: 20 DSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA 79
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193
+F L + +P L VF NSGTEANE A+ AR +TG ++
Sbjct: 80 MPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRG 139
Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251
+ G G++ T + ++ F + V PY ++ A ++ +D
Sbjct: 140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PY-------NDVEA--LKRAVD--- 183
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
A + E +QG GG+ P +L A + ++ G L I DE+Q G RTG + FE
Sbjct: 184 -EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAFE 241
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
G+VPDI+T+AK +G G+PLG V E+A + + + TFGGNP+ AAG A ++ +
Sbjct: 242 HFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 301
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
++ +L A +G + E+L A+ I +VRG G ++G+E LK A Y
Sbjct: 302 ERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLE------LKEKAAP---Y 350
Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
I KE VL + G V R PPL KED + +V+ + L+
Sbjct: 351 IARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA 395
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 339 bits (873), Expect = e-113
Identities = 124/438 (28%), Positives = 202/438 (46%), Gaps = 39/438 (8%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCH 117
+ +I+ + +L+ S PL + G+ +++D +G +YLD GI G H
Sbjct: 2 LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61
Query: 118 PYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAI 175
P V+ + Q++++ H + + N + A+ L + PGN K VFF+NSGTEA E +I
Sbjct: 62 PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121
Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRGVF 232
+ + TG II+ +HG G++ TA + GV H P+PYR +
Sbjct: 122 KVVK-NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPW 180
Query: 233 GADGEMYAKD-VQDLIDF---------GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
+G + V +I+F VAG E IQG GG + + + K
Sbjct: 181 HINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240
Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEI 341
KK G L + DEVQ G RTG + E VPD++T+AK +G GI P+GA + ++
Sbjct: 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL 299
Query: 342 AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401
+ NTFGGN + A G V+ +++ L + + +G E L L
Sbjct: 300 D--FKPGMHSNTFGGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGL------A 349
Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCF 461
DVRG G G+E+ + I+ + + G+L+ G + R+ PPL
Sbjct: 350 DDVRGIGLAWGLEYNEKKVRDR--------IIGESFKRGLLLLPAG--RSAIRVIPPLVI 399
Query: 462 TKEDADYLVDVMDYSLSK 479
++E+A +D++ +
Sbjct: 400 SEEEAKQGLDILKKVIKV 417
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 335 bits (861), Expect = e-111
Identities = 121/431 (28%), Positives = 194/431 (45%), Gaps = 38/431 (8%)
Query: 59 SADEILAKRKTFLSPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
+ ++ R TF + +Y+ V GK ++D+ G+ Y+D GGIA GHCH
Sbjct: 17 ATEQTAITRATF-DEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCH 75
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P +V+++ +Q + + H++ ++ N L V F NSGTEANE A +
Sbjct: 76 PALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKL 133
Query: 178 ARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR 229
AR Y II+ NA+HG + T+ Q + F + H P+
Sbjct: 134 ARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHV----PF- 188
Query: 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289
+++A V+ ++D H + E IQG GG+ P +L + +
Sbjct: 189 ------NDLHA--VKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA 236
Query: 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN 349
L + DEVQ G RTG + + +GV PDI+T AK +G G P+ A++TT EIA +
Sbjct: 237 LLVFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS 295
Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
+ +T+GGNP+ A A +I ++ H + L A+ +++ I D+RG G
Sbjct: 296 HGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGL 355
Query: 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL 469
L+G E LK K + E GV+V G +V R P L + D
Sbjct: 356 LIGAE------LKPKYKGRARDFLYAGAEAGVMVLNAG--ADVMRFAPSLVVEEADIHEG 407
Query: 470 VDVMDYSLSKM 480
+ ++ K+
Sbjct: 408 MQRFAQAVGKV 418
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 334 bits (859), Expect = e-111
Identities = 119/424 (28%), Positives = 194/424 (45%), Gaps = 28/424 (6%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYL 139
+ G+ ++D NGR+ +DAF G+ V G+ + D+I Q K + H+ V +
Sbjct: 34 TRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
A A+ + + P + V+F SG++ANE I + Y G + IIS
Sbjct: 94 TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRG 153
Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKDVQDL 246
YHG+ T T + F++ + V H P +R E + A ++++
Sbjct: 154 YHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEM 213
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
I +A F+ E I G GGI+ GY + +KK L +ADEV GF R G
Sbjct: 214 ILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-T 272
Query: 307 FWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TFGGNP 358
+G + +G+ PD++T+AKG+ + PL V+ + +VL + T+ +P
Sbjct: 273 MFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332
Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
+C AAG A L++I + L NA G+Y + L + +G+VRG G L VEFV D
Sbjct: 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVAD 392
Query: 419 RQLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY 475
+ + A + + GV+ + G++ PPLC T+E AD +V
Sbjct: 393 KDDRVFFDASQKIGPQVATALAASGVIG-RAMPQGDILGFAPPLCLTREQADIVVSKTAD 451
Query: 476 SLSK 479
++
Sbjct: 452 AVKS 455
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 334 bits (858), Expect = e-110
Identities = 119/428 (27%), Positives = 189/428 (44%), Gaps = 30/428 (7%)
Query: 77 HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHST 135
+ V G+ Y+ D NGRRYLDA G+ + G H ++D+ Q +R +
Sbjct: 39 LHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA 98
Query: 136 VLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---II 188
+E L P + VF+TNSG+EAN+ + M G I+
Sbjct: 99 FFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKIL 158
Query: 189 SLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKD 242
+ NAYHG A + T + F + G H P +R G G E + A++
Sbjct: 159 TRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARE 218
Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
+++ I + +AGF +E + G GG+I A GY A+ ++K I+DEV GF R
Sbjct: 219 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 278
Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TF 354
TG + WG + PD + +K + G P+GAV+ PE+++ L F T
Sbjct: 279 TG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
G+PV A + V+ + L N + +ERL + + IG+ RG GF+ +E
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALE 396
Query: 415 FVTDRQLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
V D+ KTP I + ++G++ G + PP T+ D + D
Sbjct: 397 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRP---LGQSVVLCPPFILTEAQMDEMFD 453
Query: 472 VMDYSLSK 479
++ +L K
Sbjct: 454 KLEKALDK 461
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 328 bits (843), Expect = e-109
Identities = 130/418 (31%), Positives = 200/418 (47%), Gaps = 43/418 (10%)
Query: 73 PSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
L + YS P V GK +++DE G YLD GIA GH HP +V++I +Q +++
Sbjct: 13 MYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL 72
Query: 132 QHSTVLYLNHAIADFAEAL--ASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGC 184
H + L+ N + AE L + VFF N+GTEANE AI +AR Y
Sbjct: 73 IHCSNLFWNRPQMELAELLSKNTFG----GKVFFANTGTEANEAAIKIARKYGKKKSEKK 128
Query: 185 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
I+S N++HG G++ AT Q ++ F + G + + V +D
Sbjct: 129 YRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYF----EFNNV---------ED 175
Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
++ + V E IQG GI+ +L K + L + DEVQ G R
Sbjct: 176 LRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231
Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
TG + ++ +GVVPD++T AKG+G G+P+GAV+ E A VL ++ TFGGNP+
Sbjct: 232 TG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACR 289
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
AG V+K + K+ G+YL ++L +K++Y ++ DVRG G ++G++ +
Sbjct: 290 AGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQ------FR 343
Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
+ K E +LV G N R PPL + D V+ + L +
Sbjct: 344 EEVSNRE--VATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 328 bits (844), Expect = e-108
Identities = 103/461 (22%), Positives = 166/461 (36%), Gaps = 41/461 (8%)
Query: 46 PPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDE-NGRRYLDA 104
+ D + + + L++ YL D GRRYLD
Sbjct: 3 AVVKSVALAGRPTTPDRVHEVLGRSMLVDGLDI---VLDLTRSGGSYLVDAITGRRYLDM 59
Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-----HAIADFAEALASKMPGN-L 158
F +A+ G P +VD + +Q + N A+A F E A + L
Sbjct: 60 FTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPAL 119
Query: 159 KVVFFTNSGTEANELAIMMARLYTGCND------------IISLRNAYHGNAAGTMGATA 206
+FF G A E A+ A + ++ ++ LR A+HG + T+ T
Sbjct: 120 PHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN 179
Query: 207 QSNWK---FNVVQTGVHHA--LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
F A + P A + + + +A F++E
Sbjct: 180 TKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFE-TRPHDIACFVAE 238
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
IQG GG P + A+ + + L I DEVQ G TG W ++ V PDIV
Sbjct: 239 PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVA 297
Query: 322 MAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
K G+ G V +T+GGN +L+VI+ + L A
Sbjct: 298 FGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERA 357
Query: 381 HVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
G YL+ RL L + ++ D RGRG + P A+ ++ ++ +
Sbjct: 358 VQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL--------PTTADRDELIRQLWQR 409
Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
V+V G + R PPL + + D + + +L +
Sbjct: 410 AVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 325 bits (835), Expect = e-108
Identities = 118/417 (28%), Positives = 197/417 (47%), Gaps = 39/417 (9%)
Query: 72 SPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
+ Y + + G+ YLFD+ ++YLD GI G+ H I Q+ +
Sbjct: 8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDK 67
Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCN 185
+ H++ LY N IA A+ LA L+ VFFTNSGTE+ E A+ AR Y
Sbjct: 68 LLHTSNLYYNENIAAAAKNLAKA--SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGG 125
Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
I+ ++++HG G + TA ++ F + +GV A Y + V
Sbjct: 126 QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA----KYNDI---------SSV 172
Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
+ L++ + ES+QG GGI + A+ K + L IADE+Q G R+
Sbjct: 173 EKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRS 228
Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTA 362
G F+ +E ++PDI+T AK +G G+ +GA V ++A L ++ +T+GGNP+ A
Sbjct: 229 G-KFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCA 287
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
+AV ++ +++K+ N + + YL++ L L +++ +G GF+ G+ L
Sbjct: 288 GVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLS------LD 341
Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
K ++ K +E +L+ G N R PPL KE D + + + +L
Sbjct: 342 KSVKVAK--VIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 325 bits (836), Expect = e-107
Identities = 106/484 (21%), Positives = 172/484 (35%), Gaps = 70/484 (14%)
Query: 46 PPFDYSPP------PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGR 99
FDY P P GP + E++ + + H N + + YL D +G
Sbjct: 9 VEFDYDGPLMKTEVP--GPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGN 63
Query: 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-----TVLYLNHAIADFAEALASKM 154
R LD + I+++ G+ HP +V + +L + + E+L S
Sbjct: 64 RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123
Query: 155 PGNLKVVFFTNSGTEANELAIMMARLYT------------------------GCND--II 188
P + + G+ +NE A ++ GC D I+
Sbjct: 124 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSIL 183
Query: 189 SLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNPDPYRGVFGADGEMYA-K 241
S A+HG G + T F+ P E +
Sbjct: 184 SFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLE 243
Query: 242 DVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
+V+DLI VAG + E IQ GG + + + +K G + DEVQ G
Sbjct: 244 EVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTG 303
Query: 300 FARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN 357
TG FW E G+ D++T +K + G P + FNT+ G+
Sbjct: 304 GGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGD 357
Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFV 416
P V+ +I+++ L +NA G L L L+ +Y I VRGRG +
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDT- 416
Query: 417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
P ++ ++ + GV++G G R P L F A +++
Sbjct: 417 -------PDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDI 467
Query: 477 LSKM 480
L+
Sbjct: 468 LADF 471
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 319 bits (821), Expect = e-106
Identities = 132/408 (32%), Positives = 199/408 (48%), Gaps = 46/408 (11%)
Query: 75 LFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
L + Y+ P+ V GK YL+DE G+ YLD GI GH +P + +++ Q++++ H
Sbjct: 3 LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDII 188
+ LY N + A L K VFF NSGTE+ E AI +AR Y I
Sbjct: 63 VSNLYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFI 121
Query: 189 SLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
S N++HG G++ AT Q + F + G +A + V L
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYA----KLNDI---------DSVYKL 168
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
+D AG + E IQG GG+ E + +L + + K+ L I DEVQ G RTG
Sbjct: 169 LD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE- 223
Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
F+ ++ + PD++ +AKG+G G+P+GA++ E+A+ T ++ +TFGGNP+ AG
Sbjct: 224 FYAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283
Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
V+ + +KL + VG+Y KE+L L V+GRG +LG+E L+ K
Sbjct: 284 VVDEV--EKLLPHVREVGNYFKEKLKELGKG-----KVKGRGLMLGLE------LERECK 330
Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
+ K E G+L+ G V R PPL KE D + V+
Sbjct: 331 D----YVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVLR 372
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 319 bits (821), Expect = e-105
Identities = 108/420 (25%), Positives = 183/420 (43%), Gaps = 26/420 (6%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
+ G+ YL+D G + +D G+ V G+ ++ Q++ + +T
Sbjct: 33 ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92
Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
H + + LA P VF+TNSG+E+ + I M R Y G + +I N
Sbjct: 93 HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNG 152
Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 247
YHG+ G ++ G+ H P Y+ G + A+ +++ I
Sbjct: 153 YHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKI 212
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
+ VA F+ E IQG GG+I Y P + + +K L +ADEV GF RTG +
Sbjct: 213 LEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EW 271
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAA 363
+G + G PD+ T AKG+ +G +P+GAV +AE L FN T+ G+PVC A
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331
Query: 364 GHAVLKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
HA + ++ + + Q +G Y+++R ++ + DVRG G + V ++ +
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391
Query: 423 TPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
D +++ G+ PPL T+ + D ++ V + L +
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIM---RACGDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 314 bits (808), Expect = e-103
Identities = 114/430 (26%), Positives = 190/430 (44%), Gaps = 33/430 (7%)
Query: 74 SLFHLYSKPLNVVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
++F+ SKP V G+ +L+D+ GRRYLD G GH V + + Q R+
Sbjct: 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62
Query: 133 HSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
+ + ++A LA + + + G+EA E A+ +AR Y
Sbjct: 63 FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122
Query: 187 -IISLRNAYHGNAAGTMGATAQSNWKFN----VVQTGVHHALNPDPYRGVFGADGEMYAK 241
+I+ +YHG + G++ A+ + + PDP R GA+ A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR--NGAE---DAE 177
Query: 242 DVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
++ L++ VA F++E + G + APGY V +AG + IADEV +G
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237
Query: 301 ARTGSHFWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-NYFN---TF 354
R GS GV PDI + KG+ G PL ++ P++ E + F T+
Sbjct: 238 GRCGSPL-ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTY 296
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
G+PV AAG +VL +++++ L A G+ L L AL+ ++ + VRG G LLGV
Sbjct: 297 AGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVV 356
Query: 415 FVTDRQLKTPAKAETL--YIMDKMKEMGVLV-----GKGGFYGNVFRITPPLCFTKEDAD 467
+ D + + I + G++ + G+ + PPL T + D
Sbjct: 357 -LGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415
Query: 468 YLVDVMDYSL 477
L+ ++ +L
Sbjct: 416 GLLALLAGAL 425
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 316 bits (811), Expect = e-103
Identities = 110/419 (26%), Positives = 197/419 (47%), Gaps = 26/419 (6%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
+ + +L D G LDA G+ V G+ + + Q++ + + +T
Sbjct: 38 TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTT 97
Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
H A A+ LA PG+L VFF G+EAN+ I M R Y G + IIS +NA
Sbjct: 98 HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNA 157
Query: 194 YHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
YHG+ + + + + VHH P+ + D E + A+++++ I
Sbjct: 158 YHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAIL 217
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
VA F++E +QG GG+I Y P + + K L IADEV GF RTG +++
Sbjct: 218 ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWF 276
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGH 365
G + G+ P I+T+AKG+ +G P+G + E+A V+ + + T+ G+PV A
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336
Query: 366 AVLKVIQKDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
L++++++ + ++ V + YLKE+ AL D + ++G+ + G + + ++ +
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAK 395
Query: 425 AKAET----LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
+E ++ +++ G+ I+PPL T + D + + SL +
Sbjct: 396 FASEPGTIGYICRERCFANNLIM---RHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE 451
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 314 bits (808), Expect = e-103
Identities = 104/423 (24%), Positives = 175/423 (41%), Gaps = 32/423 (7%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P +V + +L D+ GR+ D+ G+ T GH + +++ Q+ + +S H
Sbjct: 33 PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
++ AE + PGNL VFFT+SG+E A+ M R Y G +I Y
Sbjct: 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152
Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD-----GEMYAKDVQDLI 247
HG + + F V H + + G A ++ LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
+ + ++A E + G G++ GYL + + L + DEV GF RTG
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SM 271
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---------TFGGN 357
+G ++ GV PD++ +AK + NG IP+GAV+ + EI + + T+ +
Sbjct: 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331
Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
PV AAG A L ++QK+ L + V + ++ L +K + D+R G ++
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKG-AKNVIDIRNFGLAGAIQIAP 390
Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
E + + G V F G+ + P +D D L D + L
Sbjct: 391 RDGDAIVRPFE---AGMALWKAGFYV---RFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444
Query: 478 SKM 480
+K+
Sbjct: 445 NKL 447
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 312 bits (802), Expect = e-102
Identities = 115/449 (25%), Positives = 186/449 (41%), Gaps = 46/449 (10%)
Query: 45 MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVV--DGKMQYLFDENGRRYL 102
+ P D + ++ + + H Y P+ VV K +++D N +RY
Sbjct: 14 LVPRGSMEFVKDLKTPEDYINNELKYG----AHNY-DPIPVVLKRAKGVFVYDVNDKRYY 68
Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
D ++V GHCHP ++++++NQ K + + + + + L + + V
Sbjct: 69 DFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVL 126
Query: 163 FTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--F 212
N+G EANE A + R + I+ +N + G G + A+ F
Sbjct: 127 MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186
Query: 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272
PY D++ L + +V F+ E IQG G+I
Sbjct: 187 GPFAPQFSKV----PY------------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVP 230
Query: 273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-P 331
+ YL VY KK L +ADEVQ G RTG + V PD++ + K + G P
Sbjct: 231 SDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYP 289
Query: 332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL 391
+ AV+ +I V+ + +T+GGNP+ + L V+ +KL NA +G E L
Sbjct: 290 ISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL 349
Query: 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGN 451
I+ DVRG+G L +EF L I K+KE G++
Sbjct: 350 KRELKDSKIVRDVRGKGLLCAIEF-------KNELVNVLDICLKLKENGLITRDVH--DK 400
Query: 452 VFRITPPLCFTKEDADYLVDVMDYSLSKM 480
R+TPPLC TKE D +++ ++
Sbjct: 401 TIRLTPPLCITKEQLDECTEIIVKTVKFF 429
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 313 bits (805), Expect = e-102
Identities = 107/424 (25%), Positives = 198/424 (46%), Gaps = 31/424 (7%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
+ + Y+ E+GRR +D G+ G+ +VD++ +Q + +++ Y+
Sbjct: 37 QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMAT 96
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
+ A AE +A+ PG+L +FFT G+ A + A+ + Y G II + Y
Sbjct: 97 SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156
Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
HG+ A T T ++ F++ Q + +P+P E + ++ +D I+
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIE 215
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+A FL+E I GG+I GY +K L I+DEV GF R G ++
Sbjct: 216 SLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWF 274
Query: 309 GFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN-------TFGGNPV 359
E GVVPDI+T AKG+ +G +PLG + + + ++ N T+ PV
Sbjct: 275 ASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPV 334
Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
AA A +++++++ + + A + Y L +L+D + + R G + V+ + D
Sbjct: 335 ACAAALANIELMEREGIVDQAREMADYFAAALASLRD-LPGVAETRSVGLVGCVQCLLDP 393
Query: 420 QLKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
+ TL I ++ E+G++V G++ I+PPL ++ D +V +M +
Sbjct: 394 TRADGTAEDKAFTLKIDERCFELGLIV---RPLGDLCVISPPLIISRAQIDEMVAIMRQA 450
Query: 477 LSKM 480
++++
Sbjct: 451 ITEV 454
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 304 bits (780), Expect = 3e-99
Identities = 110/470 (23%), Positives = 200/470 (42%), Gaps = 47/470 (10%)
Query: 24 FSQLAQKEESSLSE--HETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSK 81
FS+LA + ++ + + P++D+I + + H Y
Sbjct: 2 FSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYG----AHNYHP 57
Query: 82 -PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
P+ + GK YL+D GR+Y D + V GHCHP +V+++ +Q+ ++ ++ + N
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRN 192
+ + ++ E + N V N+G EA E A +AR + I+
Sbjct: 118 NVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAG 175
Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
+ G + ++ F G PY D+ L
Sbjct: 176 NFWGRTLSAISSSTDPTSYDGFGPFMPGFDII----PY------------NDLPALERAL 219
Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
+VA F+ E IQG G++ PGYL V + + L IADE+Q G ARTG +
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAV 278
Query: 311 EAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
+ V PDIV + K + G+ P+ AV+ +I + + +T+GGNP+ A L+
Sbjct: 279 DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE 338
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
V++++ L NA +G L+ L L ++ VRG+G L + A
Sbjct: 339 VLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNAIVI--KETKDWDAWK-- 392
Query: 430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
+ ++++ G+L G++ R PPL +++ +++++ ++
Sbjct: 393 --VCLRLRDNGLLAKPTH--GDIIRFAPPLVIKEDELRESIEIINKTILS 438
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 301 bits (774), Expect = 8e-99
Identities = 108/416 (25%), Positives = 191/416 (45%), Gaps = 46/416 (11%)
Query: 75 LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
+ Y P+ + + ++ D G RY+D + V GH HP +++++++Q R+
Sbjct: 11 GANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL 70
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCN 185
++ + + + + E +A N ++V N+G EA E AI AR +
Sbjct: 71 TSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRA 128
Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
+II + +HG G + ++ +K F + G+ PY D + +
Sbjct: 129 EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-----GD----LEAL 175
Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
+ I + A F+ E IQG GI G+L + KK L +ADE+Q G RT
Sbjct: 176 KAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231
Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
G + + V PD+ + K +G G+ P+ +I V ++ +TFGGNP+ A
Sbjct: 232 GK-VFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACA 290
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
A L+V++++KL + +G L +L + + +I +VRG+G +G+E L
Sbjct: 291 VSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIE------LN 342
Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
PA+ +++K G+L + NV RI PPL ++ED ++ + LS
Sbjct: 343 EPARP----YCEQLKAAGLLCKETH--ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 276 bits (709), Expect = 2e-88
Identities = 115/424 (27%), Positives = 182/424 (42%), Gaps = 28/424 (6%)
Query: 80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
PL + G + D NG+ Y D F + GH + D+I Q+ +I HST+L +
Sbjct: 25 ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM 84
Query: 140 NHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
+ A AE L P L VF+++SG EA E+A+ MA Y I+++N
Sbjct: 85 TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKN 144
Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
YHG+ G + + + + + + A P YR G E + +++L
Sbjct: 145 GYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLL 204
Query: 251 TSGH--VAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
H +A E +QG G+I + GYL V + L I DEV GF RTG F
Sbjct: 205 EEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF 264
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYF---NTFGGNPV 359
E V PD++ KGI G +P+ T +I + F +++ GN +
Sbjct: 265 -ACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQL 323
Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
A L + + + + L L L +GD+R GF+ G E V +
Sbjct: 324 GCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHA-LPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
+ K P A+ + KM+E+G+L G+V PPL T E+ +V +M +
Sbjct: 383 ETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLPPLASTAEELSEMVAIMKQA 439
Query: 477 LSKM 480
+ ++
Sbjct: 440 IHEV 443
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 237 bits (606), Expect = 2e-73
Identities = 107/415 (25%), Positives = 168/415 (40%), Gaps = 32/415 (7%)
Query: 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
VV + L +GRR +D G+ HP + ++ +QI + H
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 139 LNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRN 192
+ HA A + L + P L+ VF +SG+ A E+A+ MA Y ++ RN
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 193 AYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
YHG+ G M N + A P P + G E L+
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFA--PAPQSRMDGEWDERDMVGFARLMA- 199
Query: 250 GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+A + E I QG GG+ P +L + K + G L IADE+ GF RTG F
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTA 362
E + PDI+ + K + G + L A +TT E+AE ++ + TF GNP+ A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
A +A L +++ Q + L+E+L +D ++ DVR G + VE
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVE------TT 371
Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
P L E GV + +G + + PP + L ++ ++
Sbjct: 372 HPVNMAALQ--KFFVEQGVWIRP---FGKLIYLMPPYIILPQQLQRLTAAVNRAV 421
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 223 bits (570), Expect = 7e-68
Identities = 105/467 (22%), Positives = 173/467 (37%), Gaps = 49/467 (10%)
Query: 33 SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYS-------KPLNV 85
SS H +P + G + ++I+A L+H YS P+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAAATGGLTPEQIIAVDGA----HLWHPYSSIGREAVSPVVA 58
Query: 86 VDGKMQYLF---DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
V +L D LDA T GH HP + ++ Q++ + H L H
Sbjct: 59 VAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHE 118
Query: 143 IA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
A A+ L P L VFF++SG+ + E+A MA Y G +++ R YH
Sbjct: 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYH 178
Query: 196 GNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
G+ M + + T V P R Y+ + + +G
Sbjct: 179 GDTFLAMSICDPHGG-MHSLWTDVLAAQVFAPQVPRDY----DPAYSAAFEAQLA-QHAG 232
Query: 254 HVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
+A + E + QG GG+ P YL + ++ L I DE+ GF RTG+ F +
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADH 291
Query: 313 HGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTAAGHA 366
GV PDI+ + K + G + L A + T ++A ++ TF NP+ A A
Sbjct: 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVA 351
Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
++++ + + + L L + + DVR G + +E L
Sbjct: 352 SVELLLGQDWRTRITELAAGLTAGLDTARA-LPAVTDVRVCGAIGVIECDRPVDLA---- 406
Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
+ GV + + N+ PP T + + M
Sbjct: 407 ----VATPAALDRGVWL---RPFRNLVYAMPPYICTPAEITQITSAM 446
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 204 bits (520), Expect = 5e-58
Identities = 84/478 (17%), Positives = 155/478 (32%), Gaps = 84/478 (17%)
Query: 82 PLNVVD---GKMQYLFDENG----RRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQH 133
+ V+D G+ ++ + + DA T + + R H
Sbjct: 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGH 415
Query: 134 STVLYLNHAIA-DFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
+ A AE L + G V+F+++G+ A E+A+ MA +
Sbjct: 416 VMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEA 475
Query: 187 ----------IISLRNAYHGNAAGTMGATAQSNWK------------------FNVVQTG 218
+I+LR +YHG+ G M A A S + + G
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 219 VHHALNPDPYRGVFGADGEMY-----------------------AKDVQDLIDFGTSGHV 255
+ P+ + + G +K +Q+ S HV
Sbjct: 536 SWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHV 595
Query: 256 AGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+ E + G GG+ + P + + + I DEV GF R G E G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLG 654
Query: 315 VVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN------TFGGNPVCTAAGHAV 367
PDI AK + G +PL + T + + + + ++ + + A
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKA 714
Query: 368 LKVIQKDKLQNNAHVVGSYLK-----ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
++ + + +N G L+ E + + + + V G L +E D
Sbjct: 715 IQWFKDPETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVVVIGTLFALELKADASNS 773
Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
A ++ ++E G+ GNV + C + E L+ + L +
Sbjct: 774 GYASLYAKSLLIMLREDGIFT---RPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 137 bits (348), Expect = 5e-36
Identities = 86/354 (24%), Positives = 142/354 (40%), Gaps = 48/354 (13%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
L + D + + D +G YLD FGG + GH HP V +I + +H
Sbjct: 40 GLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH---GVQYAASH 96
Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA-- 198
+ +AE + + P +++ + FT SGTE LA+ +AR +TG I+ YHG
Sbjct: 97 PLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDF 155
Query: 199 --AGTMGATAQSNWKFNVVQTGVHHAL----------NPDPYRGVFGADGEMYAKDVQDL 246
+G GV + + R VF G
Sbjct: 156 SASGYNSHF------DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHG---------- 199
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
+A F++E + G+ ++ +L + ++ G L I DEV +GF R G+H
Sbjct: 200 ------SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH 252
Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCT 361
V PD+ +AK G+P G + ++ VL+R + TF GNP+
Sbjct: 253 GM-QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITA 311
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
AA A + I +D + + +G + +E + L + G+ GR +
Sbjct: 312 AAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMP 365
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 133 bits (337), Expect = 2e-34
Identities = 77/362 (21%), Positives = 128/362 (35%), Gaps = 49/362 (13%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G D +G Y++ G GH HP + ++ + L
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV---GLNLSTQT 139
Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--A 198
A FAEA+ + P ++ +V FTNSGTEAN +A+ A TG +++ YHG
Sbjct: 140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLN 198
Query: 199 AGTMGATAQSNWKFNVVQTGVHHAL-----NPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
+ A + +H + + + + G
Sbjct: 199 FASGHAPTNA----------PYHVVLGVYNDVEGTADLLKRHG----------------H 232
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEA 312
A L E + G GG + +L + + G L I DEV + G+ E
Sbjct: 233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ----EM 288
Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAV 367
G+ D+ T+ K IG G+ GA ++ E TF N + +AGHA
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348
Query: 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
L I + ++ G + L + + G G L + + +++
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI-HFSRAPIRSAGDV 407
Query: 428 ET 429
Sbjct: 408 RA 409
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 116 bits (294), Expect = 8e-29
Identities = 101/387 (26%), Positives = 149/387 (38%), Gaps = 86/387 (22%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
P+ + GK Y +D +G +Y+D + GH HP++ +I +
Sbjct: 38 PIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
A+ L MP L V F NSGTEA I +AR YTG I+ Y
Sbjct: 98 VKF---------AKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCY 147
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG++ AG T+G + AQ FN N + +
Sbjct: 148 HGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN----------NVETLKEALD 197
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
G VA L E I G GI+E PG+L V + + +AG L I
Sbjct: 198 KWG----------------HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241
Query: 294 DEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF 351
DEV F G+ + GV PD+ + K IG G+P+GA EI E +
Sbjct: 242 DEVITAFRFMYGGAQ----DLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVA----- 292
Query: 352 N---------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
T GNP A+G A L+V+Q++ L +G+ L++ + K+ I
Sbjct: 293 -PLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDI 351
Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAET 429
+ L V + T ++ A+
Sbjct: 352 TLNRLKGALTV-YFTTNTIEDYDAAQD 377
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 116 bits (293), Expect = 1e-28
Identities = 90/385 (23%), Positives = 153/385 (39%), Gaps = 82/385 (21%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
P V G+ YL+ +G R +D + GH HP V++++ + R +
Sbjct: 39 PFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAE 98
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
+L AE + + ++ F NSGTEA AI +AR YTG + I+ Y
Sbjct: 99 VLL---------AEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCY 148
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG+ AG G A A+ +N + + VF
Sbjct: 149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN----------DVEALERVFA 198
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
G +AG + E + G+I +L A+ + +++G L I
Sbjct: 199 EYG----------------DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
DEV GF R G + DI+ + K IG G P+GAV + E+ +LT
Sbjct: 243 DEVVTGF-RLGLEGA-QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT------P 294
Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
TF +P+ AAG A LK ++++ + + + L+E + + D+ G+ +
Sbjct: 295 QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTI 354
Query: 405 RGRGFLLGVEFVTDRQLKTPAKAET 429
++ + F+ ++ A+A
Sbjct: 355 NRVESMMQL-FIGVEEVSNAAQARK 378
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 115 bits (290), Expect = 3e-28
Identities = 90/371 (24%), Positives = 144/371 (38%), Gaps = 81/371 (21%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
P+ K Y +D +G RY+D G CGH HP V++++ +++
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
VL AE + +P ++++V F NSGTEA + + R YTG + II Y
Sbjct: 95 NVL---------AEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCY 144
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG+A AG T+G T + +N + + + +F
Sbjct: 145 HGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN----------DLEAVKALFA 194
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
+ G +AG + E I G G I G+L + + + L +
Sbjct: 195 ENP----------------GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
DEV GF R E GV PD+ T+ K IG G+P+GA EI +++
Sbjct: 239 DEVITGF-RIAYGGV-QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVA------P 290
Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
T GNP+ AG L+++++ + L + L A+ + G
Sbjct: 291 AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350
Query: 405 RGRGFLLGVEF 415
+ G F
Sbjct: 351 GQVSGMFGFFF 361
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 112 bits (284), Expect = 2e-27
Identities = 92/376 (24%), Positives = 138/376 (36%), Gaps = 82/376 (21%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
PL + YLFD +G+ Y+D G + GH HP + +++ ++R +
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEME 95
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
+ A+ + +P + +V NSGTEA AI +AR YTG + II Y
Sbjct: 96 VKM---------AQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCY 145
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG+A AG T+G A+ +N + R F
Sbjct: 146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN----------DLASVRQAFE 195
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
VA + E + G I P +LP + + G L I
Sbjct: 196 QYP----------------QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLII 239
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
DEV GF R + + V+PD+ + K IG G+P+GA E+ L
Sbjct: 240 DEVMTGF-RVALAGA-QDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALA------P 291
Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
T GNP+ AAG A L I + + + L L + I V
Sbjct: 292 TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV 351
Query: 405 RGRGFLLGVEFVTDRQ 420
G + G+ F T+
Sbjct: 352 NHVGGMFGL-FFTNAD 366
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 111 bits (280), Expect = 6e-27
Identities = 91/388 (23%), Positives = 154/388 (39%), Gaps = 89/388 (22%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
PL + GK ++D +G Y+D + GH + VV+++ +R +
Sbjct: 36 PLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIE 95
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
L A+ + ++P ++++V NSGTEA A+ +AR YTG N I+ Y
Sbjct: 96 NKL---------AKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCY 145
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG+ AG T+G A++ +N + + + F
Sbjct: 146 HGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFE 195
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
G +A + E + G G++ PG+L + + ++ G L I
Sbjct: 196 QFG----------------DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIF 239
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
DEV GF R + +GV PD+ + K IG G+P+GA EI +
Sbjct: 240 DEVMTGF-RVAYNCG-QGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVA------P 291
Query: 353 --------TFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGII 401
T GNP+ AAG+ L + + + A L+ L +K+GI
Sbjct: 292 SGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKA----EMLEAGLRKAAEKHGIP 347
Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAET 429
+ G ++G+ F TD + A++
Sbjct: 348 HHINRAGSMIGI-FFTDEPVINYDAAKS 374
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 108 bits (272), Expect = 7e-26
Identities = 100/390 (25%), Positives = 154/390 (39%), Gaps = 92/390 (23%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
P +V G+ Y++D +G RYLD + GH HP V+ + ++R
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLE 94
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
L A+ + P + +V F NSGTEA A+ +AR YTG I+ R Y
Sbjct: 95 VAL---------AKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNY 144
Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
HG+A AG T+G A+ ++N +P+ R V
Sbjct: 145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN----------DPEGLREVLK 194
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
G +A + E + G G++ +L A+ K G L IA
Sbjct: 195 RRG----------------EEIAAIIFEPVVGNAGVLVPTEDFLKAL-HEAKAYGVLLIA 237
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
DEV GF R E G+ PD+VT+ K +G G+P A EI E +
Sbjct: 238 DEVMTGF-RLAFGGA-TELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVA------P 289
Query: 353 --------TFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKYG 399
T GNP+ AAG A L+++++ L++ + L+ L + + G
Sbjct: 290 LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLG----ARLEAGLKEVLKEKG 345
Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
+ V G ++ V F T+ + T A
Sbjct: 346 LPHTVNRVGSMITV-FFTEGPVVTFQDARR 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 9e-10
Identities = 92/553 (16%), Positives = 158/553 (28%), Gaps = 195/553 (35%)
Query: 1 MQRFAARR-VLSETN---SLRLPQRCFF--SQLAQKEESSLSEHETFLPRMPPFDYSPPP 54
M ++ R LS + L +P FF SQL E F +P P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQL----------QEQFNKILPE------P 44
Query: 55 YDGPSAD-------EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGG 107
+G +AD E++ K FL ++ S V+ FD+ L F
Sbjct: 45 TEGFAADDEPTTPAELVGK---FLG----YVSSL----VEPSKVGQFDQVLNLCLTEFE- 92
Query: 108 IATVCCG---HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALA---SKMPGNLKVV 161
G H ++ ++ + +T++ I ++ A
Sbjct: 93 -NCYLEGNDIH-------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 162 FFTNSGTEANELAIMMARLYT-----GCND-----IISLRNAYHG-------NAAGTMGA 204
F G A+L G D + L YH +A T+
Sbjct: 145 LFRAVGEGN-------AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 205 TAQSNWKFNVVQTGVHHALN-----------PD-----------PYRGV-----FGADGE 237
++ V T LN PD P GV + +
Sbjct: 198 LIRTTLDAEKVFT---QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 238 MYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
+ +L + G +GH G ++ I + + + S++KA + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAV------AIAETDSW-ESFFVSVRKA--ITVL-- 303
Query: 296 VQAGFARTGSHFW-GFEAHGVVP------DIVTMAKGIGNGIP---LGAVVTTPEIAEVL 345
F+ G + P I+ + G+P L ++ +V
Sbjct: 304 -----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQ 350
Query: 346 TRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN--NAHVVGSYLKERLTALKDKYGIIGD 403
N N+ P A + ++ N VV + +L YG+
Sbjct: 351 DYVNKTNSHL--P---AGKQVEISLV------NGAKNLVVSGPPQ----SL---YGLNLT 392
Query: 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVF-RITPPLCF- 461
+R G++ Q + P + K N F + P F
Sbjct: 393 LRKAKAPSGLD-----QSRIP--------FSERKLKFS---------NRFLPVASP--FH 428
Query: 462 TKEDADYLVDVMD 474
+ LV D
Sbjct: 429 S----HLLVPASD 437
Score = 44.3 bits (104), Expect = 9e-05
Identities = 47/305 (15%), Positives = 88/305 (28%), Gaps = 138/305 (45%)
Query: 38 HETFLPR--MPP--FDYSPPPYDG-PSA------------DEILAKRKTFLSPSLFHLYS 80
+E + P +PP + S +G PS + + K + L P+ +
Sbjct: 311 YEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVE- 367
Query: 81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP---YVVDSIVNQIK-------- 129
+++V NG + V G P Y ++ + + K
Sbjct: 368 --ISLV----------NGAK---NL-----VVSGP--PQSLYGLNLTLRKAKAPSGLDQS 405
Query: 130 RI---Q----------------HSTVLYLNHAIADFAEALASK----MPGNLKV-VFFTN 165
RI + HS L A + L ++++ V+ T
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 166 SGTEANELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN 224
G++ L+ ++ R+ + II L W+ Q H
Sbjct: 464 DGSDLRVLSGSISERI---VDCIIRLPV----------------KWE-TTTQFKATH--- 500
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVAGFLSESIQGVG------GIIELAP- 274
++DFG SG + + G G G +++ P
Sbjct: 501 ---------------------ILDFGPGGASG-LGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 275 ---GY 276
G+
Sbjct: 539 DDYGF 543
Score = 37.7 bits (87), Expect = 0.009
Identities = 48/291 (16%), Positives = 72/291 (24%), Gaps = 127/291 (43%)
Query: 202 MG-------ATAQSNWK-----------F---NVVQTGVHHALNPDPYRGVFG------- 233
MG AQ W F ++V NP FG
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN------NPVNLTIHFGGEKGKRI 1684
Query: 234 ------------ADGEMYAKDVQDLIDFGTSG----HVAGFLS--ESIQGVGGIIELAPG 275
DG++ + + I+ ++ G LS + Q
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ----------- 1733
Query: 276 YLPA-------VYKSIKK------------------------AGGLCIADEVQAGFARTG 304
PA ++ +K A + I V+ F R
Sbjct: 1734 --PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-- 1789
Query: 305 SHFWGFEAHGVVP-DIVTMAKGIGNGIPLGAVVTT------PEIAEVLTRR--------N 349
G VP D + + I G V + + E + +R N
Sbjct: 1790 ----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 350 YFNTFGGNPVCTAAGH-----AVLKVIQKDKLQN--NAHVVGSYLKERLTA 393
Y N V AG V V+ KLQ + S E +
Sbjct: 1846 Y-NVENQQYVA--AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 47.5 bits (112), Expect = 6e-06
Identities = 52/363 (14%), Positives = 104/363 (28%), Gaps = 43/363 (11%)
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 207
+ A ++ + + G A + + Y N A
Sbjct: 82 KDKAKELFN-YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHV 139
Query: 208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
+ A + + Y G+ K +++ I + ++ +S
Sbjct: 140 ELNGCKAINIVTEKAFDSETYDD---WKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSA 196
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP---------- 317
G ++ L VY+ K+ G + D + +
Sbjct: 197 GGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 256
Query: 318 -DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPV--CTAAGHAV 367
D +TM+ + +G +V + E+ T F T+GG A +
Sbjct: 257 ADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGL 316
Query: 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF----VTDRQLKT 423
+ +++ L YL +RL I G + + + Q
Sbjct: 317 EEGTEEEYLHYR-IGQVKYLGDRLREA--GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPA 373
Query: 424 PAKAETLYIMD--KMKEMGVL-VGKGGFYG-------NVFRIT-PPLCFTKEDADYLVDV 472
A LY+ + E+G +G+ G R+T +T + DY+ D
Sbjct: 374 QAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADA 433
Query: 473 MDY 475
+
Sbjct: 434 LIG 436
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 9e-04
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 126 NQIKRIQHSTVLYLNHAIADFAEALASK 153
+K++Q S LY A D A ALA K
Sbjct: 20 QALKKLQASLKLY---A-DDSAPALAIK 43
Score = 29.9 bits (66), Expect = 1.0
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 32/59 (54%)
Query: 12 ETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYD-GPSADEILAKRKT 69
E +L+ K ++SL ++ Y+ D P+ LA + T
Sbjct: 18 EKQALK------------KLQASL--------KL----YAD---DSAPA----LAIKAT 45
Score = 29.1 bits (64), Expect = 2.1
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 261 ESIQGVGGIIEL-APGYLPAVYKSIK 285
++++ + ++L A PA+ +IK
Sbjct: 20 QALKKLQASLKLYADDSAPAL--AIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.010
Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 53/205 (25%)
Query: 77 HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY--------VVDSIVNQI 128
H + ++ G+ QY + + + DAF + C +D I+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 129 KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-- 186
+ + L+ L SK V F N +M+ + T
Sbjct: 59 DAVSGTLRLF---------WTLLSK--QEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPS 106
Query: 187 -----IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL-------NPDPYRGVFGA 234
I R+ + + Q K+NV + + L P + G
Sbjct: 107 MMTRMYIEQRDRLYNDN--------QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 235 DG--------EMY-AKDVQDLIDFG 250
G ++ + VQ +DF
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFK 183
Score = 34.4 bits (78), Expect = 0.092
Identities = 23/173 (13%), Positives = 50/173 (28%), Gaps = 40/173 (23%)
Query: 1 MQRFAARRVL---SETNSLRLPQRCFFSQLAQKEESSLSEHETFL-----PR-MPPFDYS 51
+ + ++ + +++ +P ++ + E +L H + + P+ D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLI 465
Query: 52 PPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD-AF----- 105
PP D + + HL + + +LD F
Sbjct: 466 PPYLDQYFY--------SHIG---HHLKNI-------EHPERMTLFRMVFLDFRFLEQKI 507
Query: 106 --GGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKM 154
A G + + I + Y L +AI DF + +
Sbjct: 508 RHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 33.7 bits (76), Expect = 0.18
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 33/105 (31%)
Query: 372 QKDKLQNNAHVVGSY----------LKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQ 420
Q+D+L N+ V Y L++ L L+ ++ + G G G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGS--G-------- 162
Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED 465
KT + V + +F + C + E
Sbjct: 163 -KTWVALDVC------LSYKV---QCKMDFKIFWLNLKNCNSPET 197
Score = 29.1 bits (64), Expect = 4.2
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 18/69 (26%)
Query: 116 CHPYVVDSI-------VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGT 168
+P + I + +H L I L P + +F
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMF------ 375
Query: 169 EANELAIMM 177
+ L++
Sbjct: 376 --DRLSVFP 382
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 34.5 bits (80), Expect = 0.063
Identities = 33/231 (14%), Positives = 62/231 (26%), Gaps = 62/231 (26%)
Query: 272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWG-FEAHGVVPDI----VTMAKG 325
+AP L + K+ G + DE + G G + G G+ ++ ++AK
Sbjct: 202 IAP--LAELVNISKEFGCALLVDESHSLGT--HGPNGAGLLAELGLTREVHFMTASLAKT 257
Query: 326 IGNGIPLGAVVTTP-EIAEVLTRRNYFNTF----GGNPVCTAAGHAVLKVIQK-----DK 375
+ E+ + P A L++I+
Sbjct: 258 FAY---RAGAIWCNNEVNRCV--PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQH 312
Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE------FVTDRQLKTPAKAET 429
L A L+ L+ L G + E D + T
Sbjct: 313 LDRMAR----KLRIGLSQL-------------GLTIRSESQIIGLETGDERN-------T 348
Query: 430 LYIMDKMKEMGVLVGKGGFYGNV------FRITPPLCFTKEDADYLVDVMD 474
+ D ++ GV R++ E +++V
Sbjct: 349 EKVRDYLESNGVFG-SVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCS 398
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 33.4 bits (76), Expect = 0.15
Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 16/154 (10%)
Query: 334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA-----HVVGSYLK 388
A+V E+A+ + N+ G + +L V+++ + +K
Sbjct: 229 ALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMK 288
Query: 389 ERLTALKDKYGIIGDVR------GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL 442
R L++ G + E ++ +++ V+
Sbjct: 289 NRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVM 348
Query: 443 VGKGGFYG---NVFRITPPLCFTKEDADYLVDVM 473
G G R++ + ++ + ++ +
Sbjct: 349 SRAGERCGSDKKHVRVS--MLSREDVFNVFLERL 380
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain,
oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 33.4 bits (77), Expect = 0.17
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 42 LPRMPPFDYSPPPYD----GPSADEILAKRKTFLSPSLFHLY 79
+P + G S D LAK+KTF P+LF LY
Sbjct: 42 IPDAVSPELRSRALTIVVLGASGD--LAKKKTF--PALFQLY 79
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 31.3 bits (71), Expect = 0.84
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 20 QR-CFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHL 78
R + +L + + E L P + DE++ SL +
Sbjct: 521 DRGYIYWRLLSTDPVTAKE--VVLSEKPLISEETDLIEPTLLDELI-----CHIGSLASV 573
Query: 79 YSKP 82
Y KP
Sbjct: 574 YHKP 577
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain,
protein-inhibitor complex,
oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A
{Sus scrofa}
Length = 573
Score = 30.2 bits (67), Expect = 2.0
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 40 TFLPRMPPFDYSPPPYD-GPSADEILA----KRKTFLSPSLFHLYSKP----LNVVDGKM 90
T++P P PPP + + ++A + L S+ + + + +
Sbjct: 463 TWVPNAPCTMRLPPPTTKDATLETVMATLPNFHQASLQMSITWQLGRCQPTMVALGQHEE 522
Query: 91 QYLFDENGRRYLDAFG 106
+Y + L F
Sbjct: 523 EYFSGPGPKAVLTKFR 538
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 29.4 bits (67), Expect = 2.6
Identities = 6/16 (37%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 64 LAKRKTFLSPSLFHLY 79
LAK+K + P+++ L+
Sbjct: 17 LAKKKIY--PTIWWLF 30
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 29.5 bits (67), Expect = 2.6
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 147 AEALASKMPGNLKVVFFTNSGTEANELAIM 176
+ ++ VF +GT AN L +
Sbjct: 48 VKRKFCEIFERDVEVFLVPTGTAANALCLS 77
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase,
late protein; 1.70A {Enterobacteria phage P21}
Length = 140
Score = 28.0 bits (62), Expect = 4.3
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLNHAIADFAEALASKMPGNLK 159
Y D G+ TVC GH ++ K + LN +A A + + ++
Sbjct: 17 YKDI-VGVWTVCHGHTGKDIMLG-----KTYTKAECKALLNKDLATVARQINPYIKVDIP 70
Query: 160 -------VVFFTNSGTEANELAIMMARLYTG 183
F N G + ++ ++ G
Sbjct: 71 ETMRGALYSFVYNVGAGNFRTSTLLRKINQG 101
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta
sandwich, transcription; 2.30A {Saccharomyces
cerevisiae} SCOP: b.55.1.7
Length = 231
Score = 28.0 bits (61), Expect = 5.5
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
NP + G V+ K K+ N + L+ +KD+ II +++ + + + V
Sbjct: 149 NPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLECMGVEVKDELVIIKNLKHEVYGIWIHTV 208
Query: 417 TDRQ 420
+DRQ
Sbjct: 209 SDRQ 212
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase,
NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) -
NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP:
c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A*
1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Length = 485
Score = 28.6 bits (65), Expect = 5.5
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Query: 64 LAKRKTFLSPSLFHLY 79
LAKRK + PS+F+LY
Sbjct: 17 LAKRKLY--PSVFNLY 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 28.6 bits (63), Expect = 5.7
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 90 MQYLFDENGRRY-----LDAFGGIATVCCGHCHPY---VVDSIVNQIKRIQHSTVLYLNH 141
Q + + N RR L FG IA+ PY ++ V + L
Sbjct: 686 AQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALD 745
Query: 142 AIADFAEALASKMPG 156
EA+ G
Sbjct: 746 YQIKVLEAVLDAYVG 760
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding
protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1
PDB: 1q88_A 1q89_A
Length = 221
Score = 28.0 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 76 FHLYSKPLNVVDGKMQYLFDENGRRY 101
+++KPL ++ QYL DENG +Y
Sbjct: 167 RKIWNKPL--IEATGQYLMDENGEKY 190
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 28.5 bits (63), Expect = 6.5
Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 28/182 (15%)
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
AE A+++ K F + AN + A + G + ++ RN H
Sbjct: 174 PAVA-AEKHAARVYNADKTYFVLGGSSNAN-NTVTSALVSNG-DLVLFDRNN-H------ 223
Query: 202 MGATAQSNWKFNVVQTGVHHALNP---DPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258
+S + + G P R +G G +Y D + + V
Sbjct: 224 -----KSVYNSALAMAG----GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPE 274
Query: 259 LSESIQGVGGIIELAPGY------LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
++ + + Y V K I D G+ +
Sbjct: 275 RAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSP 334
Query: 313 HG 314
Sbjct: 335 LL 336
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 28.0 bits (63), Expect = 6.8
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 31/116 (26%)
Query: 147 AEALASKMPGNLKV-VFFTNSGTEANELAIM-MARLYTGCNDIISLRNA----YHGNAAG 200
A L ++ V F + GT+ N +A R + +I+ + + A
Sbjct: 54 AARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEA---VIATQLGHISTHETGAIE 110
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
G H + P DG++ D++ + S H+
Sbjct: 111 ATG-----------------HKVVTAP-----CPDGKLRVADIESALHENRSEHMV 144
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 28.0 bits (63), Expect = 8.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 161 VFFTNSGTEANELAI 175
+ FT+ GTE+N L I
Sbjct: 81 IIFTSGGTESNNLVI 95
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 28.1 bits (62), Expect = 9.1
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA----YHG 196
+ AE +++ + TN + AN + M G + I+ RN H
Sbjct: 196 PHKE-AEQYIARVFNADRSYMVTNGTSTAN-KIVGMYSAPAG-STILIDRNCHKSLTHL 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,807,810
Number of extensions: 508301
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1188
Number of HSP's successfully gapped: 90
Length of query: 480
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,993,456
Effective search space: 1529493648
Effective search space used: 1529493648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)