BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011670
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 225/427 (52%), Gaps = 35/427 (8%)
Query: 13 VVDESHVGPPRGSVSPTTIPLTFLDMVWISIGPMQRIFFYEFPDISTPHFTQNIYPNLKH 72
V+++ V P GS + T+PLT+ D VW++ +RI FY+ P IS P F Q I P LK
Sbjct: 4 VIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLP-ISRPDFVQTIIPTLKD 62
Query: 73 SLSLTLRHFFPFAANLTCPPP-PNHPYISYKEGDSVLVSVAESDYDFDHLTANQARDNNA 131
SLSLTL+++ P A N+ CP +P + Y G+SV V +ESD DF++L R+
Sbjct: 63 SLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKD 122
Query: 132 FHQSLVPKLPTPSLLSKETHAVPTMAVQFTVFPNSGFSIGIAFNHVAADGRSLNHFVKSW 191
F+ VP+L P + P +A+Q T+FPN G SIG +HVA DG ++ FV++W
Sbjct: 123 FYH-FVPQLAEPKD-APGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAW 180
Query: 192 ASMSVTHRLGD--------LPCHDKDLVEDPDGIASIYLNDWRNFLKNCSASSSADSGNG 243
A ++ GD +P +D+ +++DP+G+ N+ + + S +
Sbjct: 181 ALLNKFG--GDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXS------DV 232
Query: 244 VTPPAVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWM 303
VTPP +KVR T ++ R +I KLK LV+ P ++++ VTCA+VW +
Sbjct: 233 VTPP-----DKVRGTFIITRHDIGKLKNLVLT-----RRPKLTHVTSFTVTCAYVWTCII 282
Query: 304 KIQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPFPPTYFGNCLAQISGSAKRSELMGS 363
K E TG +D++ F ADCR + P PP+YFGN L ++ +L G
Sbjct: 283 K----SEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGK 338
Query: 364 NGIVVAAKAIGRAICKLKKGPLTGAENSLSHFIEKLKTPSLLVTVAGSPKFRVYDTDFGW 423
G +A + IG AI K K S +K+ L +VAGSPK +Y DFGW
Sbjct: 339 EGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSL-SVAGSPKLDLYAADFGW 397
Query: 424 GKPKKSE 430
G+P+K E
Sbjct: 398 GRPEKLE 404
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 161/477 (33%), Positives = 240/477 (50%), Gaps = 41/477 (8%)
Query: 11 VRVVDESHVGPPRGSVSPTTIPLTFLDMVWISIGPMQRIFFYEFPDISTPHFTQNIYPNL 70
+ V+++S V PP ++ ++ LTF D W+ P+ +FFYE P I+ FT+ + PN+
Sbjct: 7 LTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNI 65
Query: 71 KHSLSLTLRHFFPFAANLTC-PPPPNHPYISYKEGDSVLVSVAESDYDFDHLTANQARDN 129
KHSLS+TL+HF+PF L P P P I Y EGDSV V+ AE + D + LT N R+
Sbjct: 66 KHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNC 125
Query: 130 NAFHQSLVPKLPTPSLLSKETHAVPTMAVQFTVFPNSGFSIGIAFNHVAADGRSLNHFVK 189
+ F+ LVP L + LS + +P +VQ T+FPN G +IGI +H D + F+K
Sbjct: 126 DKFYD-LVPILGESTRLS-DCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 190 SWASMSVTHRLGDLPCHDKDLVEDP-----DGIASIYLNDWRNFLKNCSASSSADSGNGV 244
+W S++ R G+ +D+ + + D I + D +LK S + + V
Sbjct: 184 AWTSIA---RSGN---NDESFLANGTRPLYDRIIKYPMLD-EAYLKRAKVESFNE--DYV 234
Query: 245 TPPAVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWMK 304
T P +K+R T +L RA I +LK V+A P +S++ V CA++W K
Sbjct: 235 TQSLAGPSDKLRATFILTRAVINQLKDRVLAQL-----PTLEYVSSFTVACAYIWSCIAK 289
Query: 305 IQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPFPPTYFGNCLAQISGSAKRSELMGSN 364
+ +D L F P D R R+ P P YFGNC+ + AK + L+G
Sbjct: 290 SR------------NDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKE 337
Query: 365 GIVVAAKAIG----RAICKLKKGPLTGAENSLSHFIEKLKTPSLLVTVAGSPKFRVYDTD 420
G + AAK IG + + K G L S + + + P+ + V+G+PK R YD D
Sbjct: 338 GFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSE-GMPTTMTWVSGTPKLRFYDMD 396
Query: 421 FGWGKPKKSEVGHIGH-GSFSLNECRDXXXXXXXXXXXXRQQLDFFNAIIEHARAEY 476
FGWGKPKK E I H G+ S+N C++ Q++ F I + Y
Sbjct: 397 FGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGLKAY 453
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 230/449 (51%), Gaps = 45/449 (10%)
Query: 11 VRVVDESHVGPPRGSVSPTTIPLTFLDMVWISIGPMQRIFFYEFPDISTPHFTQNIYPNL 70
+ V+++S V PP ++ ++ LTF D W+ P+ +FFYE P I+ FT+ + PN+
Sbjct: 7 LTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNI 65
Query: 71 KHSLSLTLRHFFPFAANLTC-PPPPNHPYISYKEGDSVLVSVAESDYDFDHLTANQARDN 129
KHSLS+TL+HF+PF L P P P I Y EGDSV V+ AE + D + LT N R+
Sbjct: 66 KHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNC 125
Query: 130 NAFHQSLVPKLPTPSLLSKETHAVPTMAVQFTVFPNSGFSIGIAFNHVAADGRSLNHFVK 189
+ F+ LVP L + LS + +P +VQ T+FPN G +IGI +H D + F+K
Sbjct: 126 DKFYD-LVPILGESTRLS-DCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 190 SWASMSVTHR-------LGDLPCHDKDLVEDPDGIASIYLNDWRNFLKNCSASSSADSGN 242
+W S++ + G P +D+ +++ P + YL A + + +
Sbjct: 184 AWTSIARSGNNDESFLANGTRPLYDR-IIKYP-XLDEAYLK---------RAKVESFNED 232
Query: 243 GVTPPAVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLW 302
VT P +K+R T +L RA I +LK V+A P +S++ V CA++W
Sbjct: 233 YVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQL-----PTLEYVSSFTVACAYIWSCI 287
Query: 303 MKIQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPFPPTYFGNCLAQISGSAKRSELMG 362
K + +D L F P D R R P P YFGNC+ + AK + L+G
Sbjct: 288 AKSR------------NDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIG 335
Query: 363 SNGIVVAAKAIG----RAICKLKKGPLTGAENSLSHFIEKLKTPSLLVTVAGSPKFRVYD 418
G + AAK IG + + K G L S + + + P+ V+G+PK R YD
Sbjct: 336 KEGFITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSE-GXPTTXTWVSGTPKLRFYD 394
Query: 419 TDFGWGKPKKSEVGHIGH-GSFSLNECRD 446
DFGWGKPKK E I H G+ S+N C++
Sbjct: 395 XDFGWGKPKKLETVSIDHNGAISINSCKE 423
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 157/411 (38%), Gaps = 65/411 (15%)
Query: 49 IFFYEFPDISTPHFTQNIYPNLKHSLSLTLRHFFPFAANLTCPPPPNHPYISYK-EGDSV 107
++FY P S+ F + LK +LS L F+P A L I + G+ V
Sbjct: 41 VYFYR-PTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRD---EDGRIEIECNGEGV 93
Query: 108 LVSVAESDYDFDHLTANQARDNNAFHQSLVPKLPTPSL-LSKETHAVPTMAVQFTVFPNS 166
L AESD D D F +L + P++ S+ + + +Q T F
Sbjct: 94 LFVEAESDGVVD--------DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 145
Query: 167 GFSIGIAFNHVAADGRSLNHFVKSWASMSVTHRLGDLPCHDKDLVEDPDGIASIYLNDWR 226
G S+G+ H AADG S HF+ SW+ M+ + P D+ L+ D + +
Sbjct: 146 GVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEY 205
Query: 227 N---FLKNCSASSSADSGNGVTPPAVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQSEP 283
LK ++ +DS VP+ V + L R +I LK +++ +
Sbjct: 206 QPPPALKVSPQTAKSDS---------VPETAVSI-FKLTREQISALK------AKSKEDG 249
Query: 284 AAARISTYVVTCAFVWVLWMKIQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPFPPTY 343
S+Y + VW K + L+ D + D R RL PP Y
Sbjct: 250 NTISYSSYEMLAGHVWRCACKAR---------GLEVDQGTKLYIATDGRARLRPSLPPGY 300
Query: 344 FGNCLAQISGSAKRSELMGSNGIVVAAKAIGRAICKLKKGPLTGAENSLSHFIEKLKTPS 403
FGN + + A +L + AA I A+ ++ L A + L P
Sbjct: 301 FGNVIFTATPIAIAGDLE-FKPVWYAASKIHDALARMDNDYLRSALDYLE------LQPD 353
Query: 404 LLVTVAGSPKFR-------------VYDTDFGWGKPKKSEVGHIGHGSFSL 441
L V G+ F+ ++D DFGWG+P G I + S
Sbjct: 354 LKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 404
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 156/415 (37%), Gaps = 73/415 (17%)
Query: 49 IFFYEFPDISTPHFTQNIYPNLKHSLSLTLRHFFPFAANLTCPPPPNHPYISYK-EGDSV 107
++FY P S+ F + LK +LS L F+P A L I + G+ V
Sbjct: 44 VYFYR-PTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRD---EDGRIEIECNGEGV 96
Query: 108 LVSVAESDYDFDHLTANQARDNNAFHQSLVPKLPTPSL-LSKETHAVPTMAVQFTVFPNS 166
L AESD D D F +L + P++ S+ + + +Q T F
Sbjct: 97 LFVEAESDGVVD--------DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXG 148
Query: 167 GFSIGIAFNHVAADGRSLNHFVKSWASMSVTHRLGDLPCHDKDLV--EDPDGIASIYLND 224
G S+G+ H AADG S HF+ SW+ M+ + P D+ L+ DP ++
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIE- 207
Query: 225 WRNFLKNCSASSSADSGNGVTPP---AVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQS 281
PP AV PQ ++ I KL + ++A + +S
Sbjct: 208 -------------------YQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 282 EPAAARI--STYVVTCAFVWVLWMKIQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPF 339
+ I S+Y + VW K + L+ D + D R RL
Sbjct: 249 KEDGNTISYSSYEMLAGHVWRCACKAR---------GLEVDQGTKLYIATDGRARLRPSL 299
Query: 340 PPTYFGNCLAQISGSAKRSELMGSNGIVVAAKAIGRAICKLKKGPLTGAENSLSHFIEKL 399
PP YFGN + + A +L + AA I A+ ++ L A + L
Sbjct: 300 PPGYFGNVIFTATPIAIAGDLE-FKPVWYAASKIHDALARMDNDYLRSALDYLE------ 352
Query: 400 KTPSLLVTVAGSPKFR-------------VYDTDFGWGKPKKSEVGHIGHGSFSL 441
P L V G+ F+ ++D DFGWG+P G I + S
Sbjct: 353 LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 407
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 156/415 (37%), Gaps = 73/415 (17%)
Query: 49 IFFYEFPDISTPHFTQNIYPNLKHSLSLTLRHFFPFAANLTCPPPPNHPYISYK-EGDSV 107
++FY P S+ F + LK +LS L F+P A L I + G+ V
Sbjct: 44 VYFYR-PTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRD---EDGRIEIECNGEGV 96
Query: 108 LVSVAESDYDFDHLTANQARDNNAFHQSLVPKLPTPSL-LSKETHAVPTMAVQFTVFPNS 166
L AESD D D F +L + P++ S+ + + +Q T F
Sbjct: 97 LFVEAESDGVVD--------DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 148
Query: 167 GFSIGIAFNHVAADGRSLNHFVKSWASMSVTHRLGDLPCHDKDLV--EDPDGIASIYLND 224
G S+G+ H AADG S HF+ SW+ M+ + P D+ L+ DP ++
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIE- 207
Query: 225 WRNFLKNCSASSSADSGNGVTPP---AVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQS 281
PP AV PQ ++ I KL + ++A + +S
Sbjct: 208 -------------------YQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 282 EPAAARI--STYVVTCAFVWVLWMKIQESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPF 339
+ I S+Y + VW K + L+ D + D R RL
Sbjct: 249 KEDGNTISYSSYEMLAGHVWRCACKAR---------GLEVDQGTKLYIATDGRARLRPSL 299
Query: 340 PPTYFGNCLAQISGSAKRSELMGSNGIVVAAKAIGRAICKLKKGPLTGAENSLSHFIEKL 399
PP YFGN + + A +L + AA I A+ ++ L A + L
Sbjct: 300 PPGYFGNVIFTATPIAIAGDLE-FKPVWYAASKIHDALARMDNDYLRSALDYLE------ 352
Query: 400 KTPSLLVTVAGSPKFR-------------VYDTDFGWGKPKKSEVGHIGHGSFSL 441
P L V G+ F+ ++D DFGWG+P G I + S
Sbjct: 353 LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 407
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 132/367 (35%), Gaps = 69/367 (18%)
Query: 69 NLKHSLSLTLRHFFPFAANLTCPPPPNHPYISYKEGDSVLVSVAESDYDFDHLTANQARD 128
+LK SLS L HF+P A + N G + + ++ +QA
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINV----NSSVDCNDSGVPFVEARVQAQL-------SQAIQ 110
Query: 129 NNAFHQSLVPKLPT---PSLLSKETHAVPTMAVQFTVFPNSGFSIGIAFNHVAADGRSLN 185
N + L LP+ P + VP +AV+ + F G +IG+ +H AD SL
Sbjct: 111 NVVELEKLDQYLPSAAYPGGKIEVNEDVP-LAVKISFFECGGTAIGVNLSHKIADVLSLA 169
Query: 186 HFVKSWASMSVTHRLGDLPCHDKDLVEDPDGIASIYLNDWRNFLKNCSASSSADSGNGVT 245
F+ +W + LP D A+ +
Sbjct: 170 TFLNAWTATCRGETEIVLPNFDL-------------------------AARHFPPVDNTP 204
Query: 246 PPAVVPQEKVRLTLVLGRAEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWMKI 305
P +VP E V + + + EK+ L A+ E +R+ V A++W + +
Sbjct: 205 SPELVPDENVVMKRFV--FDKEKIGALRAQASSASEEKNFSRVQLVV---AYIWKHVIDV 259
Query: 306 QESKEGTTGGHLDDDTLSHFIAPADCRGRLGLPFPPTYFGNCLAQISGSAKRSELMGSNG 365
+K G + + + R R+ P P GN +A + +A +E
Sbjct: 260 TRAKYGAKNKFV-------VVQAVNLRSRMNPPLPHYAMGN-IATLLFAAVDAEW----- 306
Query: 366 IVVAAKAIGRAICKLKKGPLTGAENSLSHFIEKLKT------PSLLVTVAGSPKFRVYDT 419
K I L+ L E+ +H + K T P L++ + YD
Sbjct: 307 ----DKDFPDLIGPLRTS-LEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDL 361
Query: 420 DFGWGKP 426
DFGWGKP
Sbjct: 362 DFGWGKP 368
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 378 CKLKKGPLTGAENSLSHFIEKLKTPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHI 434
C + GP+ +N ++ FI+ K L A V D DFG+G V H+
Sbjct: 270 CDYEFGPI---QNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDDFGYGSTDTGNVSHV 323
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 264 AEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWMKIQESKEGTTGGHLD 318
AE +K + L + E +S Y + F W LW +Q S G+LD
Sbjct: 324 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASXSTIEFGYLD 378
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 264 AEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWMKIQESKEGTTGGHLD 318
AE +K + L + E +S Y + F W LW +Q S G+LD
Sbjct: 324 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLD 378
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 264 AEIEKLKQLVVAATQTQSEPAAARISTYVVTCAFVWVLWMKIQESKEGTTGGHLD 318
AE +K + L + E +S Y + F W LW +Q S G+LD
Sbjct: 302 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLD 356
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 30 TIPLTFLDMVWISIGPMQRIFFYEFPDISTPHFTQNIYPNLKHSLSLTLRHFFPFAANL 88
T P F+ V I P+ R F + I HF + + NL+ L+ + RHF FA
Sbjct: 160 TFPEGFIQRV---IQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEF 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,595,738
Number of Sequences: 62578
Number of extensions: 603777
Number of successful extensions: 1223
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 16
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)