BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011672
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 111 ASVFGVSAESMQCSFDSKGNSVPTILL----LMQERLYSQGGLKAEG-IFRINPENSQEE 165
+FGV ++ S + +P+ L+ +++ ++++G + G + R+ ++ +
Sbjct: 62 GKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVD 121
Query: 166 HVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVL---QCNTEEE---SV 219
H L+ D +AGL+K +FRELP+ +L E +L Q TEE+ ++
Sbjct: 122 HGEGCLSSAPPCD------IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL 175
Query: 220 ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
L L +L + + + +V NKM++ N+A++FAPN+ Q S+
Sbjct: 176 LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQG-GLKAEGIFRINPENSQEEHVRDQLN 172
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 45 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101
Query: 173 RGIVPDNID----VHCLAGLIKAWFRELPQGVLD-GLSPEQVLQCNTEEE-----SVELV 222
G+ P + D +H A ++K + RELP+ +L L P V N +E +++++
Sbjct: 102 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 160
Query: 223 KQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
+ L +L + + + + NKM N+A+VF PN+ D
Sbjct: 161 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQG-GLKAEGIFRINPENSQEEHVRDQLN 172
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 6 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 62
Query: 173 RGIVPDNID----VHCLAGLIKAWFRELPQGVLD-GLSPEQVLQCNTEEE-----SVELV 222
G+ P + D +H A ++K + RELP+ +L L P V N +E +++++
Sbjct: 63 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 121
Query: 223 KQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
+ L +L + + + + NKM N+A+VF PN+ D
Sbjct: 122 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 169
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQG-GLKAEGIFRINPENSQEE 165
P FGVS + +Q + P ++L + Y Q L EGIFR +
Sbjct: 2 PPLPNQQFGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVR 58
Query: 166 HVRDQLNRGIVPDNID----VHCLAGLIKAWFRELPQGVLD-GLSPEQVLQCNTEEE--- 217
V+ + N G+ P + D +H A ++K + RELP+ +L L P V N +E
Sbjct: 59 EVQQKYNMGL-PVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRV 117
Query: 218 --SVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
++++++ L +L + + + + NKM N+A+VF PN+ D
Sbjct: 118 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQG-GLKAEGIFRINPENSQEE 165
P FGVS + +Q + P ++L + Y Q L EGIFR +
Sbjct: 3 PPLPNQQFGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVR 59
Query: 166 HVRDQLNRGIVPDNID----VHCLAGLIKAWFRELPQGVLD-GLSPEQVLQCNTEEE--- 217
V+ + N G+ P + D +H A ++K + RELP+ +L L P V N +E
Sbjct: 60 EVQQKYNMGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRV 118
Query: 218 --SVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
++++++ L +L + + + + NKM N+A+VF PN+ D
Sbjct: 119 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 173
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQLNR----GIVPDNI--DVHCLAGLIKAWFRELPQGVL 201
GLK+EG++R++ E V+ +R + N+ D++ + G +K +FR+LP V+
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVI 362
Query: 202 DGLSPEQVL---QCNTEEESVELVKQ----LKPTEAALLNWAVDLMADVVEEEESNKMNA 254
+ + + + + +E +E V + L P L + + + V E+ N MNA
Sbjct: 363 TYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNA 422
Query: 255 RNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREE 298
N+ +VF P T M P + + + M K LI++ L E E+
Sbjct: 423 ENLGIVFGP--TLMRPPEDSTLTTLHDMRYQK-LIVQILIENED 463
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQG-GLKAEGIFRINPENSQEEHVRDQLN 172
FGVS + +Q + P ++L + Y Q L EGIF + V+ + N
Sbjct: 37 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN 93
Query: 173 RGIVPDNID----VHCLAGLIKAWFRELPQGVLD-GLSPEQVLQCNTEEE-----SVELV 222
G+ P + D +H A ++K + RELP+ +L L P V N +E +++++
Sbjct: 94 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 152
Query: 223 KQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
+ L +L + + + + NKM N+A+VF PN+ D
Sbjct: 153 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 200
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 151 AEGIFRINPENSQEEHVRDQLNRGIVPDNI------DVHCLAGLIKAWFRELPQGVLDGL 204
+GI+R++ S + +R + + VPD D+H + L K +FRELP +L
Sbjct: 54 VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQ 113
Query: 205 SPEQV---LQCNTEEESV----ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257
E+ + T+EE + ++++QL P L + + ++ + + M+A+N+
Sbjct: 114 LYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173
Query: 258 AMVFAPNMTQ 267
A+V+APN+ +
Sbjct: 174 AIVWAPNLLR 183
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQL----NRGIVPDNIDVHCLAGLIKAWFRELPQGVLD- 202
GL EG++R++ + +++++ Q N +V + V+ +AG +KA+F +LP ++
Sbjct: 52 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPY 111
Query: 203 GLSPEQVLQCNTEEES------VELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256
L PE + +++ E+VK+ P + + + + V ++ + N M A N
Sbjct: 112 SLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN 171
Query: 257 IAMVFAPNM 265
+++ F P +
Sbjct: 172 LSICFWPTL 180
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQL----NRGIVPDNIDVHCLAGLIKAWFRELPQGVLD- 202
GL EG++R++ + +++++ Q N +V + V+ +AG +KA+F +LP ++
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPY 101
Query: 203 GLSPEQVLQCNTEEES------VELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256
L PE + +++ E+VK+ P + + + + V ++ + N M A N
Sbjct: 102 SLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN 161
Query: 257 IAMVFAPNM 265
+++ F P +
Sbjct: 162 LSICFWPTL 170
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQLNRGIVPDNI------DVHCLAGLIKAWFRELPQGVL 201
GL +EG++R++ + E V+ +R +I D++ + G +K +FR+LP ++
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 202 ------DGLSPEQVLQCNTEEESV-ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNA 254
+ +++ + + E++ E +K L P L + + + V E+ N MNA
Sbjct: 99 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 158
Query: 255 RNIAMVFAPNMTQ 267
N+ +VF P + +
Sbjct: 159 ENLGIVFGPTLMR 171
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQLNRGIVPDNI------DVHCLAGLIKAWFRELPQGVL 201
GL +EG++R++ + E V+ +R +I D++ + G +K +FR+LP ++
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 202 ------DGLSPEQVLQCNTEEESV-ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNA 254
+ +++ + + E++ E +K L P L + + + V E+ N MNA
Sbjct: 360 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 419
Query: 255 RNIAMVFAPNMTQMSDP---LTALMHAVQVMNLLKTLIMK 291
N+ +VF P T M P A ++ ++ L+ L++K
Sbjct: 420 ENLGIVFGP--TLMRSPELDAMAALNDIRYQRLVVELLIK 457
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQLNR--GIVPDNI---DVHCLAGLIKAWFRELPQGVLD 202
GL +GI+R++ + + +R +N+ + D+ D+H + G +K +FRELP+ +
Sbjct: 50 GLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFP 109
Query: 203 GLSPEQVLQC------NTEEESVE-LVKQLKPTEAALLNWAVDLMADVVEEEESNKMNAR 255
EQ ++ NT E+V+ LV++L P + + +V + N M+ +
Sbjct: 110 YSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQ 169
Query: 256 NIAMVFAPNM 265
++ +VF P +
Sbjct: 170 SLGIVFGPTL 179
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 148 GLKAEGIFRINPENSQEEHVRDQL----NRGIVPDNIDVHCLAGLIKAWFRELPQGVLDG 203
GL EGI+R++ S+ E ++ Q N + + V+ +AG +K++F ELP D
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELP----DP 138
Query: 204 LSPE-------QVLQCNTEEESV----ELVKQLKPTEAALLNWAVDLMADVVEEEESNKM 252
L P + + N E+ + E++K+ + + + + V + N M
Sbjct: 139 LVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLM 198
Query: 253 NARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLI 289
+ N+++ F P + + P + M A+ +T+I
Sbjct: 199 TSENLSICFWPTLMR---PDFSTMDALTATRTYQTII 232
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLN 172
+FG+S ++ C D+ V +L + +Q G +GIFR + ++++LN
Sbjct: 12 LFGISLPNI-CENDNLPKPVLDMLFFL-----NQKGPLTKGIFRQSANVKSCRELKEKLN 65
Query: 173 RGIVP--DNIDVHCLAGLIKAWFRELPQGVLDGLSPEQ---VLQCNTEEESV----ELVK 223
G+ D + +A ++K + R +P + + V+ +EE + L+
Sbjct: 66 SGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLD 125
Query: 224 QLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNM 265
QL LL + ++ ++ + SN+M A N+A+ AP++
Sbjct: 126 QLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 153 GIFRINPENSQEEHVRDQLNRGIVP----DNIDVHCLAGLIKAWFRELPQGVLDGLSPE- 207
G+FR + S+ + +R Q+N G + + + +A ++K +FR+LP+ ++ E
Sbjct: 56 GLFRKSGVKSRIQALR-QMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSET 114
Query: 208 --QVLQCNTEEESVELVK---QLKPTE-AALLNWAVDLMADVVEEEESNKMNARNIAMVF 261
Q+ Q +++ ++ +K L P E +L + ++DV + N+M N+A+
Sbjct: 115 FLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174
Query: 262 APNMTQMS 269
AP++ ++
Sbjct: 175 APSLFHLN 182
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 180 IDVHCLAGLIKAWFRELPQGVLDG--------LSPEQVLQCNTEEESVELVKQL-----K 226
IDVH LA K + +LP V+ L+PE + EE ++L+K+L
Sbjct: 74 IDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPE----VQSSEEYIQLLKKLIRSPSI 129
Query: 227 PTEAAL-LNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMS 269
P + L L + + + + N +NAR ++ +F+P + + S
Sbjct: 130 PHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFS 173
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 164 EEHVRDQLNRGIVPDNIDVH---CLAGLIKAWFRELPQG 199
+E VR + G+ N+ AG +KAWF E PQG
Sbjct: 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQG 253
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 30 TEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAV-HNMEIGCPTNVRHITHVTFDRF 88
TE + + LS + ALRK +C V G I+++ HN ++ +VR +T
Sbjct: 7 TENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLRSVREVTGYVLVAL 66
Query: 89 NGFLGLPVE 97
N F LP+E
Sbjct: 67 NQFRYLPLE 75
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 177 PDNIDVHCLAGLIKAWFRELPQGVLDG---LSPEQVLQCNTEEESVELVKQLKPT 228
P+ +D H L + W R++ Q + DG L P+ L+ N + S L Q PT
Sbjct: 74 PEGLDQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPWKISYHLDPQACPT 128
>pdb|1CEE|B Chain B, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 59
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 66 VHNMEIGCPTNVRHITHVTFDRFNGF 91
+ +IG P+ +H++HV +D NGF
Sbjct: 4 ISKADIGAPSGFKHVSHVGWDPQNGF 29
>pdb|2ODB|B Chain B, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 35
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 70 EIGCPTNVRHITHVTFDRFNG-FLGLPVEFE 99
EI P N +H H +FD G F+GLP +++
Sbjct: 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQ 31
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 30 TEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAV-HNMEIGCPTNVRHITHVTFDRF 88
TE + + LS + ALRK +C V G I+++ HN ++ +VR +T
Sbjct: 7 TENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLRSVREVTGYVLVAL 66
Query: 89 NGFLGLPVE 97
N F LP+E
Sbjct: 67 NQFRYLPLE 75
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 30 TEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAV-HNMEIGCPTNVRHITHVTFDRF 88
TE + + LS + ALRK +C V G I+++ HN ++ +VR +T
Sbjct: 7 TENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLRSVREVTGYVLVAL 66
Query: 89 NGFLGLPVE 97
N F LP+E
Sbjct: 67 NQFRYLPLE 75
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 30 TEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAV-HNMEIGCPTNVRHITHVTFDRF 88
TE + + LS + ALRK +C V G I+++ HN ++ +VR +T
Sbjct: 8 TENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLRSVREVTGYVLVAL 67
Query: 89 NGFLGLPVE 97
N F LP+E
Sbjct: 68 NQFRYLPLE 76
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 117 SAESMQCSFDSKGNS-VPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNR-- 173
S E M F S+ + +P+I++ + Q GL G++RI+ + + ++++ R
Sbjct: 1 SMEGMLADFVSQTSPMIPSIVVHCVNEI-EQRGLTETGLYRISGCDRTVKELKEKFLRVK 59
Query: 174 --GIVPDNIDVHCLAGLIKAWFRELPQGVLD---GLSPEQVLQCNTEEESV--------E 220
++ D+H + L+K + R L + +L + + + E+ S+ E
Sbjct: 60 TVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE 119
Query: 221 LVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMS----DPLTAL 275
L + + T A L+ + V + KM+ N+A VF P + + DP+T L
Sbjct: 120 LPQANRDTLAFLM-----IHLQRVAQSPHTKMDVANLAKVFGPTIVAHAVPNPDPVTML 173
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 202 DGLSPEQVLQCNTEEESV-ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257
DGL P++VL+ E SV + T LL VD++A EE + NA NI
Sbjct: 253 DGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNI 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,676,310
Number of Sequences: 62578
Number of extensions: 435737
Number of successful extensions: 1074
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 31
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)