Query 011672
Match_columns 480
No_of_seqs 374 out of 1632
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4270 GTPase-activator prote 100.0 2E-44 4.4E-49 385.8 17.9 241 66-306 96-349 (577)
2 cd04390 RhoGAP_ARHGAP22_24_25 100.0 4.2E-41 9.2E-46 321.4 17.8 184 112-296 1-199 (199)
3 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3.8E-41 8.2E-46 319.7 14.3 176 112-291 1-188 (188)
4 cd04372 RhoGAP_chimaerin RhoGA 100.0 2.5E-40 5.3E-45 315.2 18.0 179 114-296 1-194 (194)
5 cd04407 RhoGAP_myosin_IXB RhoG 100.0 7.2E-40 1.6E-44 310.5 16.7 172 114-290 1-185 (186)
6 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.2E-39 2.5E-44 312.5 18.2 185 111-299 2-202 (203)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.2E-39 2.6E-44 315.5 17.5 186 113-299 1-208 (216)
8 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.2E-39 2.6E-44 309.3 16.9 178 114-291 1-187 (187)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2.1E-39 4.6E-44 314.8 18.4 183 111-297 2-215 (220)
10 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.6E-39 3.5E-44 309.4 17.1 184 111-296 3-195 (195)
11 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 2.4E-39 5.1E-44 308.0 17.8 181 113-299 1-191 (192)
12 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.8E-39 4E-44 310.9 16.3 174 114-291 1-200 (200)
13 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.1E-39 2.3E-44 311.5 14.4 175 112-291 1-195 (195)
14 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 3.3E-39 7.1E-44 309.6 17.8 183 113-297 1-196 (202)
15 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 2.3E-39 5.1E-44 306.9 15.9 174 114-291 1-187 (187)
16 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 3.1E-39 6.7E-44 304.9 16.5 171 114-298 1-181 (182)
17 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.8E-39 1E-43 313.3 16.6 181 113-294 1-223 (225)
18 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 5E-39 1.1E-43 308.4 15.8 174 114-291 1-203 (203)
19 cd04406 RhoGAP_myosin_IXA RhoG 100.0 6.3E-39 1.4E-43 304.1 15.4 172 114-290 1-185 (186)
20 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1E-38 2.2E-43 302.8 16.6 178 112-291 1-189 (189)
21 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 8.2E-39 1.8E-43 308.8 16.1 173 114-290 1-210 (211)
22 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.1E-38 4.6E-43 306.3 17.2 183 114-298 1-209 (213)
23 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 2.3E-38 5E-43 299.8 15.9 172 114-290 1-184 (185)
24 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 4.1E-38 8.9E-43 300.3 17.0 181 113-296 1-196 (196)
25 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 5.3E-38 1.2E-42 297.9 17.0 177 114-296 1-192 (192)
26 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 5E-38 1.1E-42 302.7 16.8 176 114-291 1-205 (207)
27 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 7.8E-38 1.7E-42 299.0 16.3 153 114-270 1-165 (196)
28 cd04377 RhoGAP_myosin_IX RhoGA 100.0 1.2E-37 2.5E-42 295.0 17.2 172 114-290 1-185 (186)
29 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.2E-37 2.6E-42 295.7 16.7 173 113-298 1-189 (190)
30 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 1.9E-37 4E-42 298.5 17.6 172 127-299 4-203 (206)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.7E-36 3.6E-41 292.3 17.6 174 114-299 1-199 (208)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.4E-36 3E-41 287.3 16.4 171 115-292 2-184 (184)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 2.4E-36 5.2E-41 288.1 16.5 164 127-292 12-189 (193)
34 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 3.8E-36 8.3E-41 287.8 16.7 167 128-298 11-190 (200)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 7.9E-36 1.7E-40 288.4 15.3 181 114-298 1-210 (212)
36 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4.5E-35 9.8E-40 281.4 14.8 159 132-291 28-203 (203)
37 KOG2200 Tumour suppressor prot 100.0 2.6E-35 5.6E-40 310.0 13.7 256 35-296 216-510 (674)
38 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 3.3E-34 7.1E-39 278.3 17.0 161 111-272 10-197 (220)
39 KOG4407 Predicted Rho GTPase-a 100.0 1.4E-33 3E-38 312.8 17.9 261 36-299 1080-1357(1973)
40 smart00324 RhoGAP GTPase-activ 100.0 2.4E-32 5.3E-37 253.6 16.6 160 131-291 2-173 (174)
41 KOG4269 Rac GTPase-activating 100.0 8.7E-32 1.9E-36 292.4 12.7 165 107-271 893-1071(1112)
42 cd00159 RhoGAP RhoGAP: GTPase- 100.0 5.7E-31 1.2E-35 241.2 16.0 158 133-291 1-169 (169)
43 KOG1450 Predicted Rho GTPase-a 100.0 2.2E-29 4.8E-34 271.3 14.0 184 110-297 453-649 (650)
44 PF00620 RhoGAP: RhoGAP domain 100.0 2.7E-29 5.9E-34 227.3 8.8 138 133-271 1-149 (151)
45 KOG4406 CDC42 Rho GTPase-activ 99.9 1.3E-27 2.8E-32 244.6 13.2 191 107-299 247-448 (467)
46 KOG1451 Oligophrenin-1 and rel 99.9 9.4E-27 2E-31 244.9 15.5 166 134-300 390-571 (812)
47 KOG2710 Rho GTPase-activating 99.9 1.1E-25 2.4E-30 233.8 12.8 167 130-297 92-292 (412)
48 KOG1453 Chimaerin and related 99.9 2.2E-25 4.9E-30 254.0 13.4 187 113-303 602-804 (918)
49 KOG1117 Rho- and Arf-GTPase ac 99.9 4.5E-24 9.6E-29 231.7 10.3 165 128-299 723-899 (1186)
50 KOG3564 GTPase-activating prot 99.9 5.5E-23 1.2E-27 212.8 14.8 167 129-297 359-542 (604)
51 KOG4724 Predicted Rho GTPase-a 99.9 1.9E-22 4E-27 215.5 6.8 234 70-325 54-308 (741)
52 KOG1452 Predicted Rho GTPase-a 99.8 1.4E-18 2.9E-23 173.2 14.4 154 111-268 182-351 (442)
53 KOG4271 Rho-GTPase activating 99.7 1E-17 2.3E-22 184.2 7.9 151 111-266 915-1076(1100)
54 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 1.9E-15 4.2E-20 144.7 14.7 137 134-271 8-167 (198)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.6 2.5E-15 5.4E-20 146.0 11.8 173 112-297 20-229 (235)
56 KOG4370 Ral-GTPase effector RL 99.3 1E-11 2.2E-16 128.4 8.1 160 128-301 67-276 (514)
57 KOG3565 Cdc42-interacting prot 99.1 4.8E-11 1E-15 131.8 5.8 139 128-268 214-365 (640)
58 PF08101 DUF1708: Domain of un 98.4 5.4E-06 1.2E-10 88.1 15.7 164 132-296 8-203 (420)
59 KOG4724 Predicted Rho GTPase-a 97.7 1.5E-05 3.3E-10 87.1 3.0 156 110-270 413-590 (741)
60 KOG1453 Chimaerin and related 96.3 0.006 1.3E-07 71.2 6.4 157 113-271 462-670 (918)
61 KOG4271 Rho-GTPase activating 96.0 0.022 4.8E-07 65.1 8.6 184 111-299 354-594 (1100)
62 KOG1449 Predicted Rho GTPase-a 94.6 0.011 2.3E-07 64.7 0.3 60 238-297 2-70 (670)
63 smart00285 PBD P21-Rho-binding 89.0 0.21 4.5E-06 35.4 1.2 29 71-99 1-30 (36)
64 KOG1449 Predicted Rho GTPase-a 87.4 0.05 1.1E-06 59.6 -4.1 152 127-299 220-389 (670)
65 cd00132 CRIB PAK (p21 activate 84.7 0.58 1.3E-05 34.2 1.6 20 69-88 1-20 (42)
66 cd01093 CRIB_PAK_like PAK (p21 79.5 1.1 2.4E-05 33.4 1.4 29 70-98 2-31 (46)
67 PF00786 PBD: P21-Rho-binding 74.8 1 2.2E-05 35.2 0.1 30 70-99 1-31 (59)
68 KOG4370 Ral-GTPase effector RL 38.9 87 0.0019 34.1 6.8 33 181-213 119-151 (514)
69 TIGR03602 streptolysinS bacter 34.5 37 0.00081 25.9 2.4 22 5-26 35-56 (56)
70 KOG4270 GTPase-activator prote 32.4 20 0.00044 40.2 1.0 158 134-302 60-238 (577)
71 PF00740 Parvo_coat: Parvoviru 26.7 22 0.00047 39.6 0.0 16 11-26 1-16 (529)
72 PLN02705 beta-amylase 25.0 52 0.0011 37.3 2.5 11 38-48 97-107 (681)
73 PHA02664 hypothetical protein; 22.9 1E+02 0.0022 32.5 4.0 13 152-164 206-220 (534)
No 1
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-44 Score=385.81 Aligned_cols=241 Identities=54% Similarity=0.794 Sum_probs=225.0
Q ss_pred cccccCCCCccceeccccccccccc---ccCCCccccccCCCCCCCCCCCccccchhhhhhccCCCCCCCcHHHHHHHH-
Q 011672 66 VHNMEIGCPTNVRHITHVTFDRFNG---FLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQE- 141 (480)
Q Consensus 66 ~~~~~igwp~~vr~v~~i~~~r~~~---~lGlp~~~~~~~~~~~~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~- 141 (480)
.+.|+|+|+++.++..|++|++|.+ |+|++.++++..+++.+.....+|||+++.+++.++.++..||.|+..++.
T Consensus 96 ~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~ 175 (577)
T KOG4270|consen 96 ECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSG 175 (577)
T ss_pred hhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhhhh
Confidence 4789999999999999999999999 999999999999999999999999999999999999888889999999999
Q ss_pred HHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh---ccHH
Q 011672 142 RLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDN--IDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC---NTEE 216 (480)
Q Consensus 142 ~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~~--~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~---~~~e 216 (480)
+||.+.|++.|||||++|...+++.||++||.|..+.. .|+|++|++||.||||||+||+++.+|+.|+++ ++.+
T Consensus 176 ~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~ 255 (577)
T KOG4270|consen 176 RLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENED 255 (577)
T ss_pred hhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHH
Confidence 99999999999999999999999999999999998876 999999999999999999999999999998865 3344
Q ss_pred H----HHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 011672 217 E----SVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKT 292 (480)
Q Consensus 217 ~----~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~ 292 (480)
+ +++++.+||+.|+.+|+|++.||+.|++++++|||+++||||||||||+|+.++.++++.+.++++++..||+.+
T Consensus 256 ~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie~~ 335 (577)
T KOG4270|consen 256 EKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIEKT 335 (577)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCC
Q 011672 293 LREREETASGGSSP 306 (480)
Q Consensus 293 ~~if~e~~~~~~sp 306 (480)
++.++....+....
T Consensus 336 l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 336 LEERDTSFPGELEF 349 (577)
T ss_pred HHhhhccCCccccc
Confidence 99998776655443
No 2
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=4.2e-41 Score=321.37 Aligned_cols=184 Identities=29% Similarity=0.448 Sum_probs=163.6
Q ss_pred CccccchhhhhhccCCCC-CCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCCCHHHHHH
Q 011672 112 SVFGVSAESMQCSFDSKG-NSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNIDVHCLAG 187 (480)
Q Consensus 112 ~vFGvpLe~L~~~~d~~g-~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~Dvh~vAs 187 (480)
+|||+||++++....+.+ ..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|... ...|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFI-REHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHH
Confidence 589999999865433333 56999999999998 679999999999999999999999999998643 4689999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhcc---------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCNT---------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~~---------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
+||+|||+||+||+|.+.|+.|+.+.+ ..+++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999987632 34577889999999999999999999999999999999999999
Q ss_pred HhhhcccCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 259 MVFAPNMTQMS--DPLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 259 iVFaPnLlr~~--d~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
+||||+|+|+. ++...+..+.+++.++++||.|+-.+|
T Consensus 160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 99999999986 556777888888999999999997766
No 3
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3.8e-41 Score=319.68 Aligned_cols=176 Identities=20% Similarity=0.422 Sum_probs=161.0
Q ss_pred CccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC-----CCCCHHHHH
Q 011672 112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP-----DNIDVHCLA 186 (480)
Q Consensus 112 ~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~-----~~~Dvh~vA 186 (480)
++||++|+++.. ..+..||.+|.+|++|| +++|+++|||||++|+..+++++++.||+|..+ +..|+|+||
T Consensus 1 k~FG~~L~~~~~---~~~~~IP~~v~~~i~~l-~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va 76 (188)
T cd04383 1 KLFNGSLEEYIQ---DSGQAIPLVVESCIRFI-NLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVA 76 (188)
T ss_pred CcCCccHHHHHH---HCCCCCChHHHHHHHHH-HHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHH
Confidence 489999999853 35678999999999998 689999999999999999999999999998742 357999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHH
Q 011672 187 GLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAM 259 (480)
Q Consensus 187 sLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAi 259 (480)
++||.|||+||+||||.++|+.|+++.+ ...+++++.+||+.|+.+|+||+.||++|++|++.||||++|||+
T Consensus 77 ~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 156 (188)
T cd04383 77 GVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAI 156 (188)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccee
Confidence 9999999999999999999999998732 346788999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 011672 260 VFAPNMTQMSDPLTALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 260 VFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n 291 (480)
||||+|+|.++....+....+++++++.||.|
T Consensus 157 vf~P~L~~~p~~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 157 CFGPTLMPVPEGQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred eeeccccCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 99999999988888888899999999999975
No 4
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=2.5e-40 Score=315.23 Aligned_cols=179 Identities=22% Similarity=0.356 Sum_probs=158.0
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcC-CCC-----CCCCHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRG-IVP-----DNIDVHCLAG 187 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g-~~~-----~~~Dvh~vAs 187 (480)
||+||+.++. +.+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||++ ... ...|+|+||+
T Consensus 1 FG~~L~~~~~---~~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 76 (194)
T cd04372 1 YGCDLTTLVK---AHNTQRPMVVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76 (194)
T ss_pred CCCChHHHHH---HcCCCCChHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence 9999999854 23568999999999998 789999999999999999999999999974 211 2348999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHh
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMV 260 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 260 (480)
+||.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||+|
T Consensus 77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaiv 156 (194)
T cd04372 77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIV 156 (194)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 99999999999999999999998863 23467889999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 261 FAPNMTQMSDP--LTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 261 FaPnLlr~~d~--~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
|||+|+|+++. ...+.+....+.+|+.||+|+.++|
T Consensus 157 f~P~Ll~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 157 FGPTLMRPPEDSALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred HhcccCCCCCccHHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 99999998753 3455566677899999999998886
No 5
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=7.2e-40 Score=310.51 Aligned_cols=172 Identities=27% Similarity=0.459 Sum_probs=155.7
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK 190 (480)
|||||+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|+.|.. ...+|+|+||++||
T Consensus 1 FGv~L~~~~-~---~~~~vP~il~~~i~~l-~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04407 1 FGVRVGSLT-S---NKTSVPIVLEKLLEHV-EMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLK 75 (186)
T ss_pred CCCcHHHHH-h---CCCCCCcHHHHHHHHH-HHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHH
Confidence 999999984 2 4568999999999998 78999999999999999999999999998742 35789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
+|||+||+||||+++|+.|+.+. ++.+++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP 155 (186)
T cd04407 76 QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhc
Confidence 99999999999999999998762 24567889999999999999999999999999999999999999999999
Q ss_pred ccCCCC---ChhHHHHHHHHHHHHHHHHHH
Q 011672 264 NMTQMS---DPLTALMHAVQVMNLLKTLIM 290 (480)
Q Consensus 264 nLlr~~---d~~~~l~~~~~v~~~v~~LI~ 290 (480)
+|+|++ ++...+.+..+...+|+.||.
T Consensus 156 ~Ll~~~~~~d~~~~~~~~~~~~~~v~~li~ 185 (186)
T cd04407 156 CLLRCPDSSDPLTSMKDVAKTTTCVEMLIK 185 (186)
T ss_pred cccCCCCCCCHHHHHHhhhhhHHHHHHHhh
Confidence 999964 456778888888999999985
No 6
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-39 Score=312.52 Aligned_cols=185 Identities=22% Similarity=0.320 Sum_probs=163.6
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC-----CCCCHHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP-----DNIDVHCL 185 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~-----~~~Dvh~v 185 (480)
+++||+||+++.. . .+..||.++.+|+.|| +++|+++|||||++|+..++++|++.+|.|.+. ...|+|++
T Consensus 2 ~~~FG~~L~~~~~-~--~~~~iP~~v~~~i~~L-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~v 77 (203)
T cd04386 2 KPVFGTPLEEHLK-R--TGREIALPIEACVMCL-LETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAV 77 (203)
T ss_pred CCcCCCCHHHHHH-H--cCCCCCHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHH
Confidence 5799999999853 2 3567999999999998 579999999999999999999999999999743 34699999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 186 AGLIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 186 AsLLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
|++||+|||+||+||+|.++|+.|+.+. +...++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||
T Consensus 78 a~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLa 157 (203)
T cd04386 78 ASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIA 157 (203)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHH
Confidence 9999999999999999999999999873 235688899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChhH----HHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 259 MVFAPNMTQMSDPLT----ALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 259 iVFaPnLlr~~d~~~----~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
+||||+|+|+++... ......+.+.++++||+|+..+|+++
T Consensus 158 i~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 158 IVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred HHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999999875432 23345678899999999999999865
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-39 Score=315.47 Aligned_cols=186 Identities=26% Similarity=0.329 Sum_probs=162.1
Q ss_pred ccccchhhhhhccC--CCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CCCCCHHHH
Q 011672 113 VFGVSAESMQCSFD--SKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PDNIDVHCL 185 (480)
Q Consensus 113 vFGvpLe~L~~~~d--~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~~~Dvh~v 185 (480)
|||+||+.++.... ..+..||.+|.+|++|| +++|+++|||||++|+..+|++|+++++.+.. +..+|+|++
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKL-EERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHH
Confidence 79999999964322 14678999999999998 68999999999999999999999999998632 356799999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 186 AGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 186 AsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
|++||+|||+||+||||.++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 99999999999999999999999988732 34567789999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 259 MVFAPNMTQMSD--------PLTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 259 iVFaPnLlr~~d--------~~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
+||||+||++.. ....+..+..+.++++.||+|+.++|...
T Consensus 160 ivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p 208 (216)
T cd04391 160 MIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWTVP 208 (216)
T ss_pred HHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 999999998743 22345566778899999999999999643
No 8
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-39 Score=309.27 Aligned_cols=178 Identities=28% Similarity=0.475 Sum_probs=160.9
Q ss_pred cccchhhhhhccCC--CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--CCCCHHHHHHHH
Q 011672 114 FGVSAESMQCSFDS--KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--DNIDVHCLAGLI 189 (480)
Q Consensus 114 FGvpLe~L~~~~d~--~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~~~Dvh~vAsLL 189 (480)
||+||++++.++.. .+..||.||.+|+++|++.+|+++|||||++|+..+|+++++.+|+|.+. ...|+|++|++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 99999998644322 25689999999999998889999999999999999999999999999765 457999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhh-ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcc--cccCCChhhhHHhhhcccC
Q 011672 190 KAWFRELPQGVLDGLSPEQVLQC-NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEE--ESNKMNARNIAMVFAPNMT 266 (480)
Q Consensus 190 K~fLReLPePLl~~~ly~~~i~~-~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s--~~NKMta~NLAiVFaPnLl 266 (480)
|+|||+||+||+|.++|+.++.. .+.+.+++++.+||+.|+.+|.||+.||++|++++ +.|||+++|||+||||+|+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~ 160 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccC
Confidence 99999999999999999999986 56788999999999999999999999999999765 7899999999999999999
Q ss_pred CC--CChhHHHHHHHHHHHHHHHHHHH
Q 011672 267 QM--SDPLTALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 267 r~--~d~~~~l~~~~~v~~~v~~LI~n 291 (480)
|+ .++...+.+..+.+.+|+.||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 161 RCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 87 45677788899999999999976
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-39 Score=314.82 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=160.5
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHHHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHCLAG 187 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~vAs 187 (480)
++|||+||+.++. +.|..||.+|.+|++|| +.+|+++|||||++|+..+|++|++.+|.+. ..+..++|+||+
T Consensus 2 ~~vFGvpL~~~~~---r~g~~IP~~i~~~i~~L-~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~ 77 (220)
T cd04375 2 KNVFGVPLLVNLQ---RTGQPLPRSIQQAMRWL-RNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVAD 77 (220)
T ss_pred CCEecCcHHHHHh---hcCCCCChHHHHHHHHH-HHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHH
Confidence 5799999987753 35778999999999998 7899999999999999999999999999863 235678999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHh
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMV 260 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 260 (480)
+||+|||+||+||||.++|+.|+++. +.++++.++.+||+.||.+|+||+.||++|++|++.|||+++|||+|
T Consensus 78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 99999999999999999999998762 34567889999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCh---------------------hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011672 261 FAPNMTQMSDP---------------------LTALMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 261 FaPnLlr~~d~---------------------~~~l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
|||+||+.... ...+.......+++.+||+|+.++|.
T Consensus 158 faP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 158 LAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred HhhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987421 12345556677889999999999884
No 10
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-39 Score=309.37 Aligned_cols=184 Identities=24% Similarity=0.354 Sum_probs=165.6
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--CCC-CHHHHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--DNI-DVHCLAG 187 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~~~-Dvh~vAs 187 (480)
..+||+||+.+. .+.+.+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|... +.+ |+|++|+
T Consensus 3 ~~~FGv~L~~~~-~~~~~~~~iP~il~~~i~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 80 (195)
T cd04404 3 TQQFGVSLQFLK-EKNPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAV 80 (195)
T ss_pred CCcCCCcHHHHH-HhCCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHH
Confidence 579999999985 34334478999999999998 569999999999999999999999999998643 333 9999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhh
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCN------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVF 261 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 261 (480)
+||+|||+||+||+|.+.|+.++.+. +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||+||
T Consensus 81 ~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf 160 (195)
T cd04404 81 ILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence 99999999999999999999998763 345688899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 262 APNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 262 aPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
||+|+|++++...+....+++.+++.||+|+.++|
T Consensus 161 aP~l~~~~~~~~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 161 GPNLLWAKDASMSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eccccCCCCcccCHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999998876677788888899999999999887
No 11
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-39 Score=308.01 Aligned_cols=181 Identities=24% Similarity=0.357 Sum_probs=163.7
Q ss_pred ccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC--CCCCCHHHHHHHHH
Q 011672 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV--PDNIDVHCLAGLIK 190 (480)
Q Consensus 113 vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~--~~~~Dvh~vAsLLK 190 (480)
+||+||+.+ |+ +..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|.. .+.+|+|++|++||
T Consensus 1 ~FG~~L~~~-~~----~~~vP~~i~~~i~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK 74 (192)
T cd04402 1 LFGQPLSNI-CE----DDNLPKPILDMLSLL-YQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLK 74 (192)
T ss_pred CCCCcHHHH-hC----CCCCCHHHHHHHHHH-HHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH
Confidence 699999998 43 567999999999998 57899999999999999999999999999974 36789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
+|||+||+||+|.+.|+.|+.+. ++..++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+||||
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP 154 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAP 154 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccc
Confidence 99999999999999999998763 24568899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 264 NMTQMSDPL-TALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 264 nLlr~~d~~-~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
+|+|++... ..+.....+..++++||+|+.++|.++
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 155 SLLWPPASSELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred cccCCCCccHHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 999998653 345556778899999999999999875
No 12
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-39 Score=310.91 Aligned_cols=174 Identities=21% Similarity=0.316 Sum_probs=154.7
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK 190 (480)
|||||+.+.. +.+..||.||.+|++|| +++|+++|||||++|+..+|++|++.|++|.. ...+|+|+||++||
T Consensus 1 FGv~l~~l~~---~~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK 76 (200)
T cd04408 1 FGVDFSQLPR---DFPEEVPFVVVRCTAEI-ENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLK 76 (200)
T ss_pred CCCCHHHHHH---hCCCCCChHHHHHHHHH-HHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHH
Confidence 9999999864 34678999999999998 78999999999999999999999999999863 35679999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------------------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccC
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCN-------------------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNK 251 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~-------------------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NK 251 (480)
+|||+||+||||+++|+.|+++. ++..++.++.+||+.||.+|+||+.||++|+++++.||
T Consensus 77 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk 156 (200)
T cd04408 77 HFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNK 156 (200)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999998752 13467889999999999999999999999999999999
Q ss_pred CChhhhHHhhhcccCCCCCh----hHHHHHHHHHHHHHHHHHHH
Q 011672 252 MNARNIAMVFAPNMTQMSDP----LTALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 252 Mta~NLAiVFaPnLlr~~d~----~~~l~~~~~v~~~v~~LI~n 291 (480)
|++.|||+||||+|+|++.. +..+.+......+|++||.|
T Consensus 157 M~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 157 MSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred CCHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence 99999999999999998642 45556667777889999875
No 13
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-39 Score=311.50 Aligned_cols=175 Identities=23% Similarity=0.395 Sum_probs=152.6
Q ss_pred CccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC------CCCCHHHH
Q 011672 112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP------DNIDVHCL 185 (480)
Q Consensus 112 ~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~------~~~Dvh~v 185 (480)
++||++|+++.. +.+..||.+|.+|++|| +++|+ +|||||++|+..+|++|++.||+|... ...|+|++
T Consensus 1 ~vFG~~L~~~~~---~~g~~iP~il~~~i~~l-~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~v 75 (195)
T cd04384 1 RVFGCDLTEHLL---NSGQDVPQVLKSCTEFI-EKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSV 75 (195)
T ss_pred CcCCccHHHHHH---HcCCCCChHHHHHHHHH-HHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHH
Confidence 489999999853 34678999999999998 78999 699999999999999999999998643 23599999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 186 AGLIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 186 AsLLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
|++||.|||+||+||||+.+|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||
T Consensus 76 a~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 155 (195)
T cd04384 76 SSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLA 155 (195)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhh
Confidence 9999999999999999999999999873 235678899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChh-------HHHHHHHHHHHHHHHHHHH
Q 011672 259 MVFAPNMTQMSDPL-------TALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 259 iVFaPnLlr~~d~~-------~~l~~~~~v~~~v~~LI~n 291 (480)
+||||+|+|+++.. .+++.....+.++++||.|
T Consensus 156 ivf~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 156 IVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred HhhhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 99999999987532 3455666666777888764
No 14
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-39 Score=309.61 Aligned_cols=183 Identities=26% Similarity=0.326 Sum_probs=158.4
Q ss_pred ccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC-CCCCHHHHHHHHHH
Q 011672 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP-DNIDVHCLAGLIKA 191 (480)
Q Consensus 113 vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~-~~~Dvh~vAsLLK~ 191 (480)
|||+||+.+.....+.+..||.+|.+|++|| ++ |+++|||||++|+..++++|++.+|+|... ...++|+||++||+
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l-~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFL-LD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHH-HH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHH
Confidence 7999999986543445678999999999998 43 699999999999999999999999998753 46789999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcc
Q 011672 192 WFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPN 264 (480)
Q Consensus 192 fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPn 264 (480)
|||+||+||+|.++|+.|+.+.+ ...++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||+||||+
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~ 158 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPN 158 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcce
Confidence 99999999999999999998732 23466788899999999999999999999999999999999999999999
Q ss_pred cCCCCChhH---H--HHHHHHHHHHHHHHHHHHHHhhc
Q 011672 265 MTQMSDPLT---A--LMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 265 Llr~~d~~~---~--l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
|+++.+... . .........++++||+|+.++|.
T Consensus 159 L~~~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 159 LFQSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGI 196 (202)
T ss_pred eecCCCcccccchhHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 999875322 1 22345567999999999999984
No 15
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-39 Score=306.85 Aligned_cols=174 Identities=22% Similarity=0.390 Sum_probs=152.7
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC-----CCCCHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP-----DNIDVHCLAGL 188 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~-----~~~Dvh~vAsL 188 (480)
||+||+.+. +. .+..||.+|.+|++|| +++|+++|||||++|+...+++|+..+|.+... ...|+|++|++
T Consensus 1 FGv~L~~~~-~~--~~~~iP~~l~~~i~~l-~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (187)
T cd04403 1 FGCHLEALC-QR--ENSTVPKFVRLCIEAV-EKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76 (187)
T ss_pred CCCChHHHH-HH--cCCCCChHHHHHHHHH-HHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHH
Confidence 999999984 33 4678999999999998 789999999999999999999999999997642 34699999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhh
Q 011672 189 IKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVF 261 (480)
Q Consensus 189 LK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 261 (480)
||+|||+||+||||+++|+.|+++.+ +..++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||
T Consensus 77 LK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf 156 (187)
T cd04403 77 LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVF 156 (187)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhc
Confidence 99999999999999999999988632 35688899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChhHH-HHHHHHHHHHHHHHHHH
Q 011672 262 APNMTQMSDPLTA-LMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 262 aPnLlr~~d~~~~-l~~~~~v~~~v~~LI~n 291 (480)
||+|+|++..... ..+....+++++.||.+
T Consensus 157 ~P~ll~~~~~~~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 157 GPTLLRPEQETGNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred cccccCCCCcchHHHHHhHHHHHHHHHHhhC
Confidence 9999999765433 34555666888888864
No 16
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=3.1e-39 Score=304.94 Aligned_cols=171 Identities=25% Similarity=0.403 Sum_probs=153.9
Q ss_pred cccchhhhhhccC-CCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--CCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFD-SKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--DNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d-~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~~~Dvh~vAsLLK 190 (480)
||+||+.++.+.. ..|..||.+|.+|++|| +++|+++|||||++|+..+|++|++.+++|... +.+|+|+||++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l-~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHH-HHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHH
Confidence 9999999854321 24678999999999998 789999999999999999999999999998754 5689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
.|||+||+||||.++|+.|+++. +...++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999998763 34568899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 264 NMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 264 nLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
+|+.+. ++++.||.|+.++|.+
T Consensus 160 ~l~~~~-------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN-------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH-------------HHHHHHHHHHHHHcCC
Confidence 997543 7899999999999964
No 17
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-39 Score=313.27 Aligned_cols=181 Identities=21% Similarity=0.236 Sum_probs=154.2
Q ss_pred ccccchhhhhhccCC------------CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC-----
Q 011672 113 VFGVSAESMQCSFDS------------KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI----- 175 (480)
Q Consensus 113 vFGvpLe~L~~~~d~------------~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~----- 175 (480)
||||+|++.+..... ....||.+|.+|++|| +++|+++|||||++|+..++++|++.||++.
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l-~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~ 79 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYL-KENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS 79 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHH-HHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc
Confidence 799999887533221 1247999999999998 6899999999999999999999999999863
Q ss_pred -CCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhc------------------------cHHHHHHHHHhcCHHHH
Q 011672 176 -VPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCN------------------------TEEESVELVKQLKPTEA 230 (480)
Q Consensus 176 -~~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~~------------------------~~e~~~~Ll~~LP~~n~ 230 (480)
..+.+++|++|++||+|||+||+||||.++|+.|+.+. .+..++.++.+||+.|+
T Consensus 80 ~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 80 FDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 22567999999999999999999999999999997541 12346789999999999
Q ss_pred HHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011672 231 ALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLR 294 (480)
Q Consensus 231 ~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~ 294 (480)
.+|+||+.||++|++|++.|||+++|||+||||+|++.++...........+.++++||+|+-+
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~~~~~~~~~~~~~ve~lI~~~~~ 223 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEMDPKEYKLSRLVVEFLIEHQDK 223 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccccCHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999998876543344455567889999999854
No 18
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=5e-39 Score=308.40 Aligned_cols=174 Identities=21% Similarity=0.331 Sum_probs=154.0
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK 190 (480)
||+||+.+. .+ .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|+.|.. ...+|+|+||++||
T Consensus 1 FG~~L~~~~-~~--~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK 76 (203)
T cd04378 1 FGVDFSQVP-RD--FPDEVPFIIKKCTSEI-ENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK 76 (203)
T ss_pred CCCChHHHH-HH--CCCCCChHHHHHHHHH-HhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 999999984 33 3567999999999998 78999999999999999999999999999863 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc---------------------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCNT---------------------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEES 249 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~~---------------------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~ 249 (480)
+|||+||+||+|+++|+.|+.+.+ +..++.++.+||+.|+.+|+||+.||++|++|++.
T Consensus 77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987632 34578899999999999999999999999999999
Q ss_pred cCCChhhhHHhhhcccCCCCCh-----hHHHHHHHHHHHHHHHHHHH
Q 011672 250 NKMNARNIAMVFAPNMTQMSDP-----LTALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 250 NKMta~NLAiVFaPnLlr~~d~-----~~~l~~~~~v~~~v~~LI~n 291 (480)
|||++.|||+||||+|+|++.. +..+.+......+|+.||.|
T Consensus 157 NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 157 NKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred hCCCHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence 9999999999999999998754 34456677777899999875
No 19
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=6.3e-39 Score=304.06 Aligned_cols=172 Identities=24% Similarity=0.433 Sum_probs=152.6
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK 190 (480)
||+||+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..+|++|+++||.+.. .+.+|+|+||++||
T Consensus 1 FGv~L~~l~-~---~~~~iP~ii~~~i~~l-~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04406 1 FGVELSRLT-S---EDRSVPLVVEKLINYI-EMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFK 75 (186)
T ss_pred CCCchHHHH-H---CCCCCCcHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHH
Confidence 999999884 2 3457999999999998 78999999999999999999999999998742 35789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
.|||+||+||||.++|+.|+++.. +..++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||+||||
T Consensus 76 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P 155 (186)
T cd04406 76 QWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcc
Confidence 999999999999999999998733 2346788999999999999999999999999999999999999999999
Q ss_pred ccCCCC---ChhHHHHHHHHHHHHHHHHHH
Q 011672 264 NMTQMS---DPLTALMHAVQVMNLLKTLIM 290 (480)
Q Consensus 264 nLlr~~---d~~~~l~~~~~v~~~v~~LI~ 290 (480)
+|+|.+ ++...+.+..+...++++||.
T Consensus 156 ~ll~~p~~~d~~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 156 CILRCPDTTDPLQSVQDISKTTTCVELIVC 185 (186)
T ss_pred cccCCCCCCCHHHHHHHHhhccchhhhhcc
Confidence 999975 455667777777888888874
No 20
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1e-38 Score=302.83 Aligned_cols=178 Identities=26% Similarity=0.481 Sum_probs=159.9
Q ss_pred CccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCCCHHHHHHH
Q 011672 112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNIDVHCLAGL 188 (480)
Q Consensus 112 ~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~Dvh~vAsL 188 (480)
++||+||+++. .+...+..||.+|..|++|| +++|+++|||||++|+..+++++++.+++|... ..+|+|++|++
T Consensus 1 ~~FGv~L~~l~-~~~~~~~~vP~il~~~i~~l-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~ 78 (189)
T cd04393 1 KVFGVPLQELQ-QAGQPENGVPAVVRHIVEYL-EQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASL 78 (189)
T ss_pred CcccccHHHHH-hccCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHH
Confidence 48999999984 44445668999999999998 679999999999999999999999999998753 34899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhcc--------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHh
Q 011672 189 IKAWFRELPQGVLDGLSPEQVLQCNT--------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMV 260 (480)
Q Consensus 189 LK~fLReLPePLl~~~ly~~~i~~~~--------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 260 (480)
||+|||+||+||+|.+.|+.|+++.+ ...++.++.+||+.|+.+|+||+.||++|++|++.||||+.|||+|
T Consensus 79 lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~v 158 (189)
T cd04393 79 LRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAV 158 (189)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhh
Confidence 99999999999999999999987621 3468899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 011672 261 FAPNMTQMSDPLTALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 261 FaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n 291 (480)
|||+|||.+.....+....-+.++|..||+|
T Consensus 159 f~P~l~~~~~~~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 159 FGPDVFHVYTDVEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred ccCceeCCCCCcccHHHHHHHHHHHHHHhcC
Confidence 9999999988777777777888999999975
No 21
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.2e-39 Score=308.84 Aligned_cols=173 Identities=21% Similarity=0.361 Sum_probs=151.7
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK 190 (480)
||+||+.+. .+ .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|.. ...+|+|++|++||
T Consensus 1 FG~~L~~~~-~~--~~~~iP~il~~ci~~i-e~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK 76 (211)
T cd04409 1 FGADFAQVA-KK--SPDGIPFIIKKCTSEI-ESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK 76 (211)
T ss_pred CCCChHHHH-Hh--CCCCCCcHHHHHHHHH-HHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence 999999984 33 3457999999999998 78999999999999999999999999999863 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc-----------------------------HHHHHHHHHhcCHHHHHHHHHHHhhhh
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCNT-----------------------------EEESVELVKQLKPTEAALLNWAVDLMA 241 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~~-----------------------------~e~~~~Ll~~LP~~n~~lL~~Li~fL~ 241 (480)
+|||+||+||||.++|+.|+.+.+ +..++.++.+||+.||.+|+||+.||+
T Consensus 77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~ 156 (211)
T cd04409 77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH 156 (211)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987521 235678999999999999999999999
Q ss_pred HhhhcccccCCChhhhHHhhhcccCCCCCh-----hHHHHHHHHHHHHHHHHHH
Q 011672 242 DVVEEEESNKMNARNIAMVFAPNMTQMSDP-----LTALMHAVQVMNLLKTLIM 290 (480)
Q Consensus 242 ~V~~~s~~NKMta~NLAiVFaPnLlr~~d~-----~~~l~~~~~v~~~v~~LI~ 290 (480)
+|++|++.|||+++|||+||||+|+|+... ...+.+......+|++||.
T Consensus 157 ~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~ 210 (211)
T cd04409 157 RVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLIT 210 (211)
T ss_pred HHHcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhh
Confidence 999999999999999999999999998643 2344566667788999985
No 22
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=306.25 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=156.6
Q ss_pred cccchhhhhhccCCC---------CCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC----CCCC
Q 011672 114 FGVSAESMQCSFDSK---------GNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV----PDNI 180 (480)
Q Consensus 114 FGvpLe~L~~~~d~~---------g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~----~~~~ 180 (480)
|||||+.++ ++++. ...||.+|.+|++|| +++|+++|||||++|+..++++|++.||++.. ....
T Consensus 1 FGv~L~~l~-~~~~~~~~~~~~~~~~~IP~~l~~~i~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~ 78 (213)
T cd04397 1 FGVPLEILV-EKFGADSTLGVGPGKLRIPALIDDIISAM-RQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKE 78 (213)
T ss_pred CCCCHHHHH-HHhCcccccccCCCCCCCCHHHHHHHHHH-HHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccC
Confidence 999999985 44322 236999999999998 68999999999999999999999999999742 3457
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhccc-----
Q 011672 181 DVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEE----- 248 (480)
Q Consensus 181 Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~----- 248 (480)
++|++|++||.|||+||+||||.++|+.|+++.+ ...++.++.+||+.||.+|+||+.||++|+.++.
T Consensus 79 ~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~ 158 (213)
T cd04397 79 NPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEET 158 (213)
T ss_pred cHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 9999999999999999999999999999998743 2235668889999999999999999999998764
Q ss_pred ccCCChhhhHHhhhcccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 249 SNKMNARNIAMVFAPNMTQMSDPL-TALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 249 ~NKMta~NLAiVFaPnLlr~~d~~-~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
.|||+++|||+||||||+|+.... .........+.+|+.||+|+-.+|..
T Consensus 159 ~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv~~LI~n~~~if~v 209 (213)
T cd04397 159 GSKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAVNYLIENNEEFCEV 209 (213)
T ss_pred CCcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 599999999999999999986543 34445556679999999999999853
No 23
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-38 Score=299.80 Aligned_cols=172 Identities=20% Similarity=0.394 Sum_probs=150.4
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC----CCCCHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP----DNIDVHCLAGLI 189 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~----~~~Dvh~vAsLL 189 (480)
||+||++++. .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|++|... .++|+|+||++|
T Consensus 1 FG~pL~~~~~----~~~~IP~~l~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 75 (185)
T cd04373 1 FGVPLANVVT----SEKPIPIFLEKCVEFI-EATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGAL 75 (185)
T ss_pred CCCchHHHHh----CCCCCCcHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHH
Confidence 9999999853 4678999999999998 579999999999999999999999999987532 357899999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhh
Q 011672 190 KAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFA 262 (480)
Q Consensus 190 K~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFa 262 (480)
|+|||+||+||+|+++|+.|+++. ++..++.++++||+.|+.+|+||+.||++|+++++.||||++|||+|||
T Consensus 76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~ 155 (185)
T cd04373 76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155 (185)
T ss_pred HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence 999999999999999999998873 2356788999999999999999999999999999999999999999999
Q ss_pred cccCCCCC-hhHHHHHHHHHHHHHHHHHH
Q 011672 263 PNMTQMSD-PLTALMHAVQVMNLLKTLIM 290 (480)
Q Consensus 263 PnLlr~~d-~~~~l~~~~~v~~~v~~LI~ 290 (480)
|+|+|+.. .+..+..+..++.+|+.+|.
T Consensus 156 P~L~~~~~~~~~~~~~~~~~q~~i~~~i~ 184 (185)
T cd04373 156 PTLMRPDFTSMEALSATRIYQTIIETFIQ 184 (185)
T ss_pred cccCCCCCCCHHHHHccHHHHHHHHHHhh
Confidence 99999864 45555555556666666653
No 24
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-38 Score=300.28 Aligned_cols=181 Identities=27% Similarity=0.400 Sum_probs=157.9
Q ss_pred ccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC------CCCCHHHHH
Q 011672 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP------DNIDVHCLA 186 (480)
Q Consensus 113 vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~------~~~Dvh~vA 186 (480)
+|||||+... ....+..||.+|.+|+++| +++|+++|||||++|+..++++|++.+|+|... +..|+|++|
T Consensus 1 ~FGvpl~~~~--~~~~~~~vP~iv~~~~~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va 77 (196)
T cd04395 1 TFGVPLDDCP--PSSENPYVPLIVEVCCNIV-EARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVS 77 (196)
T ss_pred CCCccHHHHh--cccCCCCCChHHHHHHHHH-HHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHH
Confidence 5999999753 2233568999999999987 789999999999999999999999999998642 246899999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHH
Q 011672 187 GLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAM 259 (480)
Q Consensus 187 sLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAi 259 (480)
++||+|||+||+||||.+.|+.|+.+.+ +..+++++.+||+.|+.+|+||+.||++|++|++.|||+++|||+
T Consensus 78 ~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi 157 (196)
T cd04395 78 SLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157 (196)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHH
Confidence 9999999999999999999999988632 346888999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 260 VFAPNMTQMSDP--LTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 260 VFaPnLlr~~d~--~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
||||+|+|+++. .....+.....++++.||+|+..+|
T Consensus 158 ~faP~l~r~~~~~~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 158 VFGPTLVRTSDDNMETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred hhccccCCCCCCCHHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 999999998754 2334456667899999999987655
No 25
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.3e-38 Score=297.94 Aligned_cols=177 Identities=23% Similarity=0.421 Sum_probs=157.2
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC------C--CCCCHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV------P--DNIDVHCL 185 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~------~--~~~Dvh~v 185 (480)
||+||+.+.. +.+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|++.. + ...|+|++
T Consensus 1 FG~~L~~~~~---~~~~~iP~~v~~~i~~l-~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v 76 (192)
T cd04398 1 FGVPLEDLIL---REGDNVPNIVYQCIQAI-ENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV 76 (192)
T ss_pred CCCChHHHHH---HcCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence 9999999854 24578999999999998 67999999999999999999999999998752 1 23599999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 186 AGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 186 AsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
|++||+|||+||+||+|.++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLa 156 (192)
T cd04398 77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLA 156 (192)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHH
Confidence 99999999999999999999999998632 35578899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 259 MVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 259 iVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
+||||+|+|+++. .+......+.+++.||+|+.++|
T Consensus 157 ivf~P~l~~~~~~--~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 157 IIWGPTLMNAAPD--NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred HHHhhhhCCCCcc--chhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999998865 33445556799999999999887
No 26
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-38 Score=302.67 Aligned_cols=176 Identities=23% Similarity=0.403 Sum_probs=150.6
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---C--C-CCCHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---P--D-NIDVHCLAG 187 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~--~-~~Dvh~vAs 187 (480)
||+||+.++. +++.+..||.+|.+|++|| +.+|+++|||||++|+..++++|+++||++.. . + ..|+|+||+
T Consensus 1 FGvpL~~l~~-re~~~~~IP~iv~~ci~~L-~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~ 78 (207)
T cd04379 1 FGVPLSRLVE-REGESRDVPIVLQKCVQEI-ERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITG 78 (207)
T ss_pred CCCChHHHHh-hcCCCCCcChHHHHHHHHH-HHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHH
Confidence 9999999964 4445678999999999998 67999999999999999999999999998742 1 1 248999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhcc----------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCNT----------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~~----------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
+||+|||+||+||||.++|+.|+++.. .+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 79 lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NL 158 (207)
T cd04379 79 VLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158 (207)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence 999999999999999999999987632 2346788999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChhH-------------HHHHHHHHHHHHHHHHHH
Q 011672 258 AMVFAPNMTQMSDPLT-------------ALMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 258 AiVFaPnLlr~~d~~~-------------~l~~~~~v~~~v~~LI~n 291 (480)
|+||||+|+++++... +-...++.+.++.+||+-
T Consensus 159 Aivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
T cd04379 159 AVCFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQI 205 (207)
T ss_pred HHhhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHh
Confidence 9999999999865321 123456667788888864
No 27
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=7.8e-38 Score=298.98 Aligned_cols=153 Identities=25% Similarity=0.408 Sum_probs=139.0
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CCCCCHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PDNIDVHCLAGL 188 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~~~Dvh~vAsL 188 (480)
||+||+.+. .+ .+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||++.. .+..|+|+||++
T Consensus 1 FGv~L~~~~-~r--~~~~IP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (196)
T cd04387 1 FGVKISTVT-KR--ERSKVPYIVRQCVEEV-ERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76 (196)
T ss_pred CCCCHHHHH-Hh--cCCCCChHHHHHHHHH-HHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 999999874 43 4667999999999998 68999999999999999999999999998743 246899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhh
Q 011672 189 IKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVF 261 (480)
Q Consensus 189 LK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 261 (480)
||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 156 (196)
T cd04387 77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVF 156 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 9999999999999999999998762 234578899999999999999999999999999999999999999999
Q ss_pred hcccCCCCC
Q 011672 262 APNMTQMSD 270 (480)
Q Consensus 262 aPnLlr~~d 270 (480)
||+|+|++.
T Consensus 157 ~P~Llr~~~ 165 (196)
T cd04387 157 GPTLLRPSE 165 (196)
T ss_pred ccccCCCCc
Confidence 999999864
No 28
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.2e-37 Score=295.01 Aligned_cols=172 Identities=28% Similarity=0.451 Sum_probs=155.2
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHCLAGLIK 190 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~vAsLLK 190 (480)
||+||+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|. ..+.+|+|+||++||
T Consensus 1 FG~~L~~~~-~---~~~~vP~~l~~~~~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK 75 (186)
T cd04377 1 FGVSLSSLT-S---EDRSVPLVLEKLLEHI-EMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75 (186)
T ss_pred CCCCHHHHH-h---CCCCCChHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence 999999984 2 3568999999999998 6899999999999999999999999999984 236689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 191 AWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 191 ~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
+|||+||+||||++.|+.|+.+. ++..++.++.+||+.|+.+|.||+.||++|++|++.|||++.|||+||||
T Consensus 76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P 155 (186)
T cd04377 76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAP 155 (186)
T ss_pred HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhh
Confidence 99999999999999999998752 23467889999999999999999999999999999999999999999999
Q ss_pred ccCCCCC---hhHHHHHHHHHHHHHHHHHH
Q 011672 264 NMTQMSD---PLTALMHAVQVMNLLKTLIM 290 (480)
Q Consensus 264 nLlr~~d---~~~~l~~~~~v~~~v~~LI~ 290 (480)
+|+|+++ +..++.+......++++||+
T Consensus 156 ~ll~~~~~~~~~~~~~d~~~~~~~~e~li~ 185 (186)
T cd04377 156 CILRCPDTADPLQSLQDVSKTTTCVETLIK 185 (186)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999864 45677888888999999996
No 29
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-37 Score=295.67 Aligned_cols=173 Identities=25% Similarity=0.371 Sum_probs=151.5
Q ss_pred ccccchhhhhhccCC--CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC------CCCCHHH
Q 011672 113 VFGVSAESMQCSFDS--KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP------DNIDVHC 184 (480)
Q Consensus 113 vFGvpLe~L~~~~d~--~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~------~~~Dvh~ 184 (480)
|||+||++++..... .+..||.+|.+|++||.+.+++++|||||++|+...+++|+++++++... ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999987532211 25689999999999995444589999999999999999999999998532 3579999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc--------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT--------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~--------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~N 256 (480)
||++||.|||+||+||+|.++|+.|..+.+ ...++.++.+||+.|+.+|+||+.||++|++|++.||||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 999999999999999999999999987532 346788999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 257 IAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 257 LAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
||+||||+|+++. .++..+|.+|..+|++
T Consensus 161 La~vf~P~L~~~~-------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 161 VCIVFSPTLNIPA-------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred hhhhcCCCCCCCH-------------HHHHHHHHHHHHHcCC
Confidence 9999999998775 5799999999999964
No 30
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-37 Score=298.50 Aligned_cols=172 Identities=24% Similarity=0.389 Sum_probs=153.4
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHhCCCCCCCC
Q 011672 127 SKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNIDVHCLAGLIKAWFRELPQGVLDG 203 (480)
Q Consensus 127 ~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~Dvh~vAsLLK~fLReLPePLl~~ 203 (480)
..+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|... ..+|+|+||++||.|||+||+||+|+
T Consensus 4 ~~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~ 82 (206)
T cd04376 4 PIARQVPRLVESCCQHL-EKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPR 82 (206)
T ss_pred CCCCCCCHHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCH
Confidence 34568999999999998 789999999999999999999999999998743 46799999999999999999999999
Q ss_pred CCHHHHHhhcc------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhccc-----------ccCCChhhhHHhhhcccC
Q 011672 204 LSPEQVLQCNT------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEE-----------SNKMNARNIAMVFAPNMT 266 (480)
Q Consensus 204 ~ly~~~i~~~~------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~-----------~NKMta~NLAiVFaPnLl 266 (480)
++|+.|+.+.+ ...++.++.+||+.||.+|+||+.||++|++|++ .||||++|||+||||+|+
T Consensus 83 ~~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll 162 (206)
T cd04376 83 ELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLL 162 (206)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhcccc
Confidence 99999998743 3567889999999999999999999999999986 799999999999999999
Q ss_pred CCCChh--------HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 267 QMSDPL--------TALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 267 r~~d~~--------~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
|++... ..+.+....+.+|++||+|+..+|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 163 HKQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCCC
Confidence 986532 345666778899999999999999643
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-36 Score=292.27 Aligned_cols=174 Identities=24% Similarity=0.369 Sum_probs=149.1
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC----CCCCHHHHHHHH
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP----DNIDVHCLAGLI 189 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~----~~~Dvh~vAsLL 189 (480)
||.+|.+- .++ .|.+|++|| ++ |+++|||||++|+..++++|++++|+|... ..+|+|+||++|
T Consensus 1 ~~~~~~~~---------~~~-~v~~~i~~l-~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lL 68 (208)
T cd04392 1 FGAPLTEE---------GIA-QIYQLIEYL-EK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVL 68 (208)
T ss_pred CCCCcccc---------ccH-HHHHHHHHH-Hh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 78888552 133 778899998 55 999999999999999999999999998643 357999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhcc-------------------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhccccc
Q 011672 190 KAWFRELPQGVLDGLSPEQVLQCNT-------------------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESN 250 (480)
Q Consensus 190 K~fLReLPePLl~~~ly~~~i~~~~-------------------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~N 250 (480)
|.|||+||+||||.++|+.|+++.+ ++.++.++.+||+.||.+|+||+.||++|++|++.|
T Consensus 69 K~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N 148 (208)
T cd04392 69 KGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKN 148 (208)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999876421 234667899999999999999999999999999999
Q ss_pred CCChhhhHHhhhcccCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 251 KMNARNIAMVFAPNMTQMSD--PLTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 251 KMta~NLAiVFaPnLlr~~d--~~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
||++.|||+||||+|+|+.. +.........++.++++||+|+.++|...
T Consensus 149 kM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 149 KMSADNLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLFKAP 199 (208)
T ss_pred CCCHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999764 23333455677899999999999999643
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-36 Score=287.32 Aligned_cols=171 Identities=24% Similarity=0.401 Sum_probs=151.8
Q ss_pred ccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 011672 115 GVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PDNIDVHCLAGLI 189 (480)
Q Consensus 115 GvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~~~Dvh~vAsLL 189 (480)
|.+|+..+ ..+..||.+|.+|++|| +++|+++|||||++|+..++++|+++|+.+.. +..+|+|+||++|
T Consensus 2 ~~~l~~~~----~~~~~iP~~v~~~i~~l-~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~ll 76 (184)
T cd04385 2 GPALEDQQ----LTDNDIPVIVDKCIDFI-TQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVL 76 (184)
T ss_pred CccHHHhh----hCCCCCChHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHH
Confidence 77787754 34578999999999998 67999999999999999999999999988642 3568999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhh
Q 011672 190 KAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFA 262 (480)
Q Consensus 190 K~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFa 262 (480)
|.|||+||+||||.++|+.|+.+. ++..++.++.+||+.|+.+|++|+.||++|++|++.|||+++|||+|||
T Consensus 77 K~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~ 156 (184)
T cd04385 77 KRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFG 156 (184)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhc
Confidence 999999999999999999999873 2346788999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 011672 263 PNMTQMSDPLTALMHAVQVMNLLKTLIMKT 292 (480)
Q Consensus 263 PnLlr~~d~~~~l~~~~~v~~~v~~LI~n~ 292 (480)
|+|+|+++. ........+++++.||+||
T Consensus 157 P~ll~~~~~--~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 157 PTLFQTDEH--SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred cccCCCCcc--chhHHHHHHHHHHHHHhcC
Confidence 999998865 4556667789999999885
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=2.4e-36 Score=288.09 Aligned_cols=164 Identities=19% Similarity=0.385 Sum_probs=147.3
Q ss_pred CCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHhCCCCCCCC
Q 011672 127 SKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV---PDNIDVHCLAGLIKAWFRELPQGVLDG 203 (480)
Q Consensus 127 ~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~---~~~~Dvh~vAsLLK~fLReLPePLl~~ 203 (480)
..+..||.+|.+|++|| +++|+++|||||++|+..+|++|+++|++|.. ...+|+|++|++||+|||+||+||||.
T Consensus 12 ~~~~~IP~~l~~ci~~i-e~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~ 90 (193)
T cd04382 12 STSPMIPALIVHCVNEI-EARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITF 90 (193)
T ss_pred CCCCCccHHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCH
Confidence 34678999999999998 78999999999999999999999999998753 345699999999999999999999999
Q ss_pred CCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCC----hh
Q 011672 204 LSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD----PL 272 (480)
Q Consensus 204 ~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d----~~ 272 (480)
++|+.|+++.+ ...++.++..||+.|+.+|+||+.||++|++ ++.|||++.|||+||||+||+.+. .+
T Consensus 91 ~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~ 169 (193)
T cd04382 91 ALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPM 169 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHH
Confidence 99999998732 3467889999999999999999999999999 999999999999999999998753 36
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011672 273 TALMHAVQVMNLLKTLIMKT 292 (480)
Q Consensus 273 ~~l~~~~~v~~~v~~LI~n~ 292 (480)
..+.++...+.+|+.||+..
T Consensus 170 ~~~~~~~~~~~vve~Li~~~ 189 (193)
T cd04382 170 TILQDTVRQPRVVERLLEIP 189 (193)
T ss_pred HHHHHhHHHHHHHHHHHhCC
Confidence 77788888889999999764
No 34
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=3.8e-36 Score=287.81 Aligned_cols=167 Identities=18% Similarity=0.316 Sum_probs=144.8
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHHHHhCCCCCCCCC
Q 011672 128 KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHCLAGLIKAWFRELPQGVLDGL 204 (480)
Q Consensus 128 ~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~vAsLLK~fLReLPePLl~~~ 204 (480)
....+|.+|.+|+++| |++|+++|||||++|+.. +.+|++.|+.+. ..+.+|+|+||++||.|||+||+||||+.
T Consensus 11 ~~~~~P~iv~~ci~~I-E~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~~ 88 (200)
T cd04388 11 PPDVAPPLLIKLVEAI-EKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAP 88 (200)
T ss_pred CCCCCCHHHHHHHHHH-HHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCHH
Confidence 4468999999999997 899999999999999775 788999999852 34578999999999999999999999999
Q ss_pred CHHHHHhhcc--------HHHHHHHHH--hcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHH
Q 011672 205 SPEQVLQCNT--------EEESVELVK--QLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTA 274 (480)
Q Consensus 205 ly~~~i~~~~--------~e~~~~Ll~--~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~ 274 (480)
+|+.|+++.+ .+.++.++. .||+.|+.+|+||+.||++|++|+..|+|+++|||+||||+|||++.. .
T Consensus 89 ~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~--~ 166 (200)
T cd04388 89 VYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPA--S 166 (200)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcc--c
Confidence 9999998631 234566776 799999999999999999999999999999999999999999999765 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 275 LMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 275 l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
.........+|+.||.+++.+..-
T Consensus 167 ~~~~~~~~~vvE~Li~~~~~e~~~ 190 (200)
T cd04388 167 SDSPEFHIRIIEVLITSEWNERQA 190 (200)
T ss_pred ccchhhHHHHHHHHHHHHHhhcCC
Confidence 334456678999999998887754
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.9e-36 Score=288.38 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=154.2
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCC--CCCC----CccccCCCchHHHHHHHHHhcCCCC-------CCC
Q 011672 114 FGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGG--LKAE----GIFRINPENSQEEHVRDQLNRGIVP-------DNI 180 (480)
Q Consensus 114 FGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~G--l~~E----GIFRisG~~~~I~~Lr~~ld~g~~~-------~~~ 180 (480)
|||||+.+. .. .+..||.+|.+|++|| +++| +..+ ||||++|+..++++||++||+|... ..+
T Consensus 1 FGv~L~~~~-~~--~~~~VP~vV~~ci~~i-e~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~ 76 (212)
T cd04399 1 FGVDLETRC-RL--DKKVVPLIVSAILSYL-DQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKF 76 (212)
T ss_pred CCCcHHHHH-hh--cCCCCCHHHHHHHHHH-HHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccC
Confidence 999999984 33 4567999999999998 6644 4333 9999999999999999999998643 357
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh-------------ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcc
Q 011672 181 DVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC-------------NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEE 247 (480)
Q Consensus 181 Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~-------------~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s 247 (480)
|+|+||++||+||||||+||+|+++|+.|+++ .+...++.++.+||+.|+.+|++|+.||++|++++
T Consensus 77 dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~ 156 (212)
T cd04399 77 EPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEIT 156 (212)
T ss_pred CHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764 12346788999999999999999999999999987
Q ss_pred ccc---CCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 248 ESN---KMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 248 ~~N---KMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
..| ||+++|||+||||+|+|+...............+++.||+|+.++|++
T Consensus 157 ~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 157 KMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred hcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHHHHhHHHhccc
Confidence 666 699999999999999998654434455567789999999999999964
No 36
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.5e-35 Score=281.40 Aligned_cols=159 Identities=17% Similarity=0.311 Sum_probs=139.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHH-HhcCC-----C-C--CCCCHHHHHHHHHHHHHhCCCCCCC
Q 011672 132 VPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQ-LNRGI-----V-P--DNIDVHCLAGLIKAWFRELPQGVLD 202 (480)
Q Consensus 132 VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~-ld~g~-----~-~--~~~Dvh~vAsLLK~fLReLPePLl~ 202 (480)
.|.||.+|++|| +++|+++|||||++|+..+|+++++. ++.+. . . ..+|+|+||++||+|||+||+||||
T Consensus 28 ~~~iv~~ci~~l-e~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 28 GFKFVRKCIEAV-ETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred cHHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 455889999998 78999999999999999999999875 56541 1 1 2579999999999999999999999
Q ss_pred CCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCCh-hHH
Q 011672 203 GLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDP-LTA 274 (480)
Q Consensus 203 ~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~-~~~ 274 (480)
+++|+.|+.+.+ +..++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||+||||+|+|+... ..+
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~~ 186 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVAA 186 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHHH
Confidence 999999998732 356788999999999999999999999999999999999999999999999998753 455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011672 275 LMHAVQVMNLLKTLIMK 291 (480)
Q Consensus 275 l~~~~~v~~~v~~LI~n 291 (480)
+......+.+++.||+|
T Consensus 187 ~~~~~~~~~vve~LIeN 203 (203)
T cd04374 187 IMDIKFQNIVVEILIEN 203 (203)
T ss_pred HHHhHHHHHHhhhHhcC
Confidence 67777778889999976
No 37
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-35 Score=310.01 Aligned_cols=256 Identities=19% Similarity=0.256 Sum_probs=198.0
Q ss_pred hhhhHHHHHHHHhccccccccc---ccCCccccccccccCC--CCccceecc---cccccccccccCCCccccccCCCCC
Q 011672 35 NQLSLVAFVMAALRKSMVSCRV---ERGEDVISAVHNMEIG--CPTNVRHIT---HVTFDRFNGFLGLPVEFEVEVPCRV 106 (480)
Q Consensus 35 ~~~s~~~~~~~~~~~s~~~~~~---~~~~d~~~~~~~~~ig--wp~~vr~v~---~i~~~r~~~~lGlp~~~~~~~~~~~ 106 (480)
.|.+.+++-......|...-.+ ..-.-.....+.++|+ .+.+|+++. .+.+++|.+.+|++.+. .+..++
T Consensus 216 ~E~~~~erR~s~~~as~sr~~r~s~q~sh~Pk~~~~s~~I~d~~~~qm~~~~~~SLieLTA~~d~~~~~lK~--kr~kk~ 293 (674)
T KOG2200|consen 216 IEAAGLERRDSGVGASLSRPNRHSFQSSHRPKLNSGSTRIGDQSAQQMKKLHHLSLIELTALMDILGIQLKR--KRAKKV 293 (674)
T ss_pred cchhhhhhhhccccccccccccccCccccCCCCCCCCcccCCcCHHHHhhhhhhHHHHHHHHHHHhCchhhh--hcccCC
Confidence 3444554444444444432222 1212233556789998 556666554 55678889999986554 344556
Q ss_pred CCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC-----CCCCCC
Q 011672 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI-----VPDNID 181 (480)
Q Consensus 107 ~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~-----~~~~~D 181 (480)
..+.+.||||||..++. +.|..||.+|+++++|| +.+||+++||||++|.+++|+.|++.++... .++...
T Consensus 294 d~kd~~vFGVPL~vll~---rtG~~lP~~iQq~m~~l-r~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~ 369 (674)
T KOG2200|consen 294 DGKDGGVFGVPLTVLLQ---RTGQPLPLSIQQAMRYL-RERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQS 369 (674)
T ss_pred ccCCCceeecCceeeec---cCCCcCcHHHHHHHHHH-HHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhh
Confidence 67789999999998863 78999999999999998 8999999999999999999999999998743 346678
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCCh
Q 011672 182 VHCLAGLIKAWFRELPQGVLDGLSPEQVLQC-------NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNA 254 (480)
Q Consensus 182 vh~vAsLLK~fLReLPePLl~~~ly~~~i~~-------~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta 254 (480)
.|++|++||+|||+||+||||.++.+.|+++ .+..+++.+|..||.+||.+|+.|+.||++|+.+++.|+||+
T Consensus 370 ~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~ 449 (674)
T KOG2200|consen 370 AHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTL 449 (674)
T ss_pred hhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccch
Confidence 9999999999999999999999999999987 345667788999999999999999999999999999999999
Q ss_pred hhhHHhhhcccCCC----CC----------h-----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 255 RNIAMVFAPNMTQM----SD----------P-----LTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 255 ~NLAiVFaPnLlr~----~d----------~-----~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
.|||+||||+||.. .+ . ...+..+.-..+.+..||..+-.-|
T Consensus 450 ~NlsvcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf 510 (674)
T KOG2200|consen 450 MNLSVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLF 510 (674)
T ss_pred hhhhhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999853 12 1 1223444445566777777765544
No 38
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=3.3e-34 Score=278.33 Aligned_cols=161 Identities=20% Similarity=0.324 Sum_probs=144.7
Q ss_pred CCccccchhhhhhccCC-------------------CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchH----HHHH
Q 011672 111 ASVFGVSAESMQCSFDS-------------------KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQ----EEHV 167 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~-------------------~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~----I~~L 167 (480)
.++||.+|+.|....++ ....||.+|.+|++|| +++|+++|||||++|+... ++++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L-~~~gl~~eGiFR~~G~~~~~~~~i~~l 88 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYL-YTRGLAQEGLFEEPGLPSEPGELLAEI 88 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHH-HHcCCcccCcccCCCcccchHHHHHHH
Confidence 46788888877432211 2357999999999998 5799999999999999999 9999
Q ss_pred HHHHhcCCCC-CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh--ccHHHHHHHHH-hcCHHHHHHHHHHHhhhhHh
Q 011672 168 RDQLNRGIVP-DNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC--NTEEESVELVK-QLKPTEAALLNWAVDLMADV 243 (480)
Q Consensus 168 r~~ld~g~~~-~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~--~~~e~~~~Ll~-~LP~~n~~lL~~Li~fL~~V 243 (480)
++.+|+|... ...|+|++|++||.|||+||+||||+.+|+.|+++ .+.+.++++++ +||+.|+.+|.||+.||++|
T Consensus 89 ~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v 168 (220)
T cd04380 89 RDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLREL 168 (220)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 9999999644 67899999999999999999999999999999998 67788999999 99999999999999999999
Q ss_pred hhcccccCCChhhhHHhhhcccCCCCChh
Q 011672 244 VEEEESNKMNARNIAMVFAPNMTQMSDPL 272 (480)
Q Consensus 244 ~~~s~~NKMta~NLAiVFaPnLlr~~d~~ 272 (480)
+++++.|||+++|||+||||+|+|++.+.
T Consensus 169 ~~~~~~nkM~~~nLA~vF~P~Llr~~~~~ 197 (220)
T cd04380 169 LSESADRGLDENTLATIFGRVLLRDPPRA 197 (220)
T ss_pred HHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence 99999999999999999999999987653
No 39
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=312.76 Aligned_cols=261 Identities=20% Similarity=0.258 Sum_probs=199.1
Q ss_pred hhhHHHHHHHHhcccccccccccCCccccccccccCCCCccceecccccccccccccCCCccccccCCCCCCCCCCCccc
Q 011672 36 QLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFG 115 (480)
Q Consensus 36 ~~s~~~~~~~~~~~s~~~~~~~~~~d~~~~~~~~~igwp~~vr~v~~i~~~r~~~~lGlp~~~~~~~~~~~~~~~~~vFG 115 (480)
-++.++.++.++..+.......+++........-+.+-|.+-+++...-+.+...-.|-...-.-..+.-...+..++||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 45677778888874443333333333223333445555665555544444444333332111111112222335668999
Q ss_pred cchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--------CCCCHHHHHH
Q 011672 116 VSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--------DNIDVHCLAG 187 (480)
Q Consensus 116 vpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--------~~~Dvh~vAs 187 (480)
|+|.+ |-...-...||.||..|+. |+|.+||.+.|||||+||++.|.+|++.+|.+.|. .+-|+++|.+
T Consensus 1160 Vrl~d--CP~~~~n~yVP~iV~~C~~-vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSS 1236 (1973)
T KOG4407|consen 1160 VRLAD--CPTGSCNDYVPMIVQACVC-VVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSS 1236 (1973)
T ss_pred ccccc--CCcccccccchHHHHHHHH-HHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHH
Confidence 99988 5444456789999999998 56999999999999999999999999999998532 3569999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHh
Q 011672 188 LIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMV 260 (480)
Q Consensus 188 LLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 260 (480)
|||.|||.||+||||..+|..||++++ +..+++||..||.++|.+|++|+.||.+|+.|+++|||-.+|||++
T Consensus 1237 LLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1237 LLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred HHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence 999999999999999999999999865 4457899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCh-h-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 261 FAPNMTQMSDP-L-TALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 261 FaPnLlr~~d~-~-~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
|||+|+|.++. + +.+.++....+||++||.+|.-.|++.
T Consensus 1317 FGPsiVRts~Dnm~tmVthM~dQckIVEtLI~~~dwfF~es 1357 (1973)
T KOG4407|consen 1317 FGPSIVRTSDDNMATMVTHMSDQCKIVETLIHYNDWFFDES 1357 (1973)
T ss_pred eccceeccCCccHHHHhhcchhhhhHHHHHHhhhhheeccC
Confidence 99999998754 3 455677888899999999998888764
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=2.4e-32 Score=253.60 Aligned_cols=160 Identities=31% Similarity=0.471 Sum_probs=146.8
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHhCCCCCCCCCCH
Q 011672 131 SVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV----PDNIDVHCLAGLIKAWFRELPQGVLDGLSP 206 (480)
Q Consensus 131 ~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~----~~~~Dvh~vAsLLK~fLReLPePLl~~~ly 206 (480)
.||.+|..|++||. ++|+++|||||++|+..+++++++.++++.. ...+|+|++|++||.|||+||+||+|.+.|
T Consensus 2 ~vP~~l~~~~~~l~-~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYLE-KRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHHH-HcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 59999999999984 6999999999999999999999999999874 357899999999999999999999999999
Q ss_pred HHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhH-HHHHH
Q 011672 207 EQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLT-ALMHA 278 (480)
Q Consensus 207 ~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~-~l~~~ 278 (480)
+.|+.+.+ ...++.++.+||+.|+.+|.||+.||++|+.|++.|+|+++|||+||||+|+|+++... .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~~ 160 (174)
T smart00324 81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160 (174)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 99998643 46688999999999999999999999999999999999999999999999999987654 46777
Q ss_pred HHHHHHHHHHHHH
Q 011672 279 VQVMNLLKTLIMK 291 (480)
Q Consensus 279 ~~v~~~v~~LI~n 291 (480)
.....++++||++
T Consensus 161 ~~~~~~i~~li~~ 173 (174)
T smart00324 161 RHQNTVVETLIEN 173 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 8889999999986
No 41
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.97 E-value=8.7e-32 Score=292.35 Aligned_cols=165 Identities=25% Similarity=0.443 Sum_probs=142.7
Q ss_pred CCCCCCccccchhhhhh-ccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC------CCC
Q 011672 107 PSASASVFGVSAESMQC-SFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV------PDN 179 (480)
Q Consensus 107 ~~~~~~vFGvpLe~L~~-~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~------~~~ 179 (480)
+.+..+|||.||..-+. ...+....||.||++|++||+..+|+++|||||++|++..|++|+++||.+.. .++
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 34567999976643211 11233567999999999999779999999999999999999999999999832 257
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCC
Q 011672 180 IDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC-------NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKM 252 (480)
Q Consensus 180 ~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~-------~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKM 252 (480)
.|||+||++||+|||+||+|||+.++|..|... +....+.+||..||++|..+|.+|+.||++|+.++.+|||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 899999999999999999999999999998765 2344688999999999999999999999999999999999
Q ss_pred ChhhhHHhhhcccCCCCCh
Q 011672 253 NARNIAMVFAPNMTQMSDP 271 (480)
Q Consensus 253 ta~NLAiVFaPnLlr~~d~ 271 (480)
+++||++||+|+|.+|.+-
T Consensus 1053 nlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred cccceeeeecccccCcHHh
Confidence 9999999999999998753
No 42
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=5.7e-31 Score=241.22 Aligned_cols=158 Identities=31% Similarity=0.492 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Q 011672 133 PTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNIDVHCLAGLIKAWFRELPQGVLDGLSPEQV 209 (480)
Q Consensus 133 P~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~ 209 (480)
|.+|..|++|| +++|+.++||||++|+..++++|++.++.+... ..+|+|++|++||.|||+||+|||+.+.|+.+
T Consensus 1 P~~l~~~~~~l-~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYL-EKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHH-HHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 88999999998 569999999999999999999999999999863 67899999999999999999999999999999
Q ss_pred Hhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChh-HHHHHHHHH
Q 011672 210 LQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPL-TALMHAVQV 281 (480)
Q Consensus 210 i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~-~~l~~~~~v 281 (480)
+.+. +...++.++.+||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|++...+. .........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~~~~ 159 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKL 159 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHhHHH
Confidence 9873 45678899999999999999999999999999999999999999999999999987654 445666777
Q ss_pred HHHHHHHHHH
Q 011672 282 MNLLKTLIMK 291 (480)
Q Consensus 282 ~~~v~~LI~n 291 (480)
..+++.||.+
T Consensus 160 ~~~~~~li~~ 169 (169)
T cd00159 160 NEIVEFLIEN 169 (169)
T ss_pred HHHHHHHHhC
Confidence 8889988864
No 43
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-29 Score=271.27 Aligned_cols=184 Identities=22% Similarity=0.406 Sum_probs=162.1
Q ss_pred CCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CCCCCHHH
Q 011672 110 SASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PDNIDVHC 184 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~~~Dvh~ 184 (480)
...+||++|+.+ |. +.+..||.||.+|++.+ +..|++..||||++|+...|++||.++|.... ..+.|+|+
T Consensus 453 ~~~vFGs~Leal-c~--rE~~~vP~~V~~c~~~I-E~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~diha 528 (650)
T KOG1450|consen 453 FDKVFGSPLEAL-CQ--RENGLVPKIVRLCIEHI-EKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHA 528 (650)
T ss_pred cCcccCccHHHH-hh--ccCCCcchHHHHHHHHH-hhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHH
Confidence 467999999998 55 44678999999999987 89999999999999999999999999995432 23469999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
|+++||.||||||+||++..+...|..+. +.+...+++..||..|+.+|+||+.||++|..|+.+|||+.+||
T Consensus 529 i~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NL 608 (650)
T KOG1450|consen 529 ITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNL 608 (650)
T ss_pred HHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccce
Confidence 99999999999999999999999998873 34567889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 011672 258 AMVFAPNMTQMSDPL-TALMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 258 AiVFaPnLlr~~d~~-~~l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
|+||||+|+++.+.. ..+.+.....++|+.||++..++|+
T Consensus 609 aIVfgpTl~~~~~~~~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 609 AIVFGPTLIKPEQETSSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred EEEeccccccccccccchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 999999999976553 3345566777899999999988874
No 44
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.96 E-value=2.7e-29 Score=227.27 Aligned_cols=138 Identities=32% Similarity=0.563 Sum_probs=125.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHH
Q 011672 133 PTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV----PDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQ 208 (480)
Q Consensus 133 P~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~----~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~ 208 (480)
|.+|..|++|| +++|+.++||||++|+..++++|++.++.+.. .+.+|+|++|++||.|||+||+||++.++|+.
T Consensus 1 P~~l~~~~~~l-~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 1 PRILNDCVDYL-EKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp EHHHHHHHHHH-HHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred ChHHHHHHHHH-HHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHH
Confidence 88999999998 67999999999999999999999999999874 36889999999999999999999999999999
Q ss_pred HHhh-------ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCCh
Q 011672 209 VLQC-------NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDP 271 (480)
Q Consensus 209 ~i~~-------~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~ 271 (480)
|+.+ .+.+.++.++.+||+.|+.+|.+|+.||++|+++++.|+|++.|||+||||+|++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 9964 23456888999999999999999999999999999999999999999999999998754
No 45
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.3e-27 Score=244.64 Aligned_cols=191 Identities=26% Similarity=0.386 Sum_probs=169.8
Q ss_pred CCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCC-CCCCCccccCCCchHHHHHHHHHhcCCCCC--CC-CH
Q 011672 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGG-LKAEGIFRINPENSQEEHVRDQLNRGIVPD--NI-DV 182 (480)
Q Consensus 107 ~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~G-l~~EGIFRisG~~~~I~~Lr~~ld~g~~~~--~~-Dv 182 (480)
+......||+||+-+. .....+..||.+|..|+++| ...| +.+|||||.+++...+.++++.+|+|..++ .+ |+
T Consensus 247 ~pl~t~qFgvpLqf~~-~~~~e~~~iPpiv~~tV~~L-~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 247 PPLPTQQFGVPLQFIP-EKNPEGESIPPIVRSTVEYL-QAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCchhhcCccHHHhc-ccCcccCCCCcHHHHHhhhh-hccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 3456789999999874 34445789999999999998 7788 999999999999999999999999998653 33 59
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHhhccH------HHHHHHHHh-cCHHHHHHHHHHHhhhhHhhhcccccCCChh
Q 011672 183 HCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTE------EESVELVKQ-LKPTEAALLNWAVDLMADVVEEEESNKMNAR 255 (480)
Q Consensus 183 h~vAsLLK~fLReLPePLl~~~ly~~~i~~~~~------e~~~~Ll~~-LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~ 255 (480)
|..|.+||.|||+||+||+++++|+.+....+. ....++++. ||+.|+.++++++.||.+|++|+..|+||+.
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~s 404 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTAS 404 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccc
Confidence 999999999999999999999999998876433 346788887 9999999999999999999999999999999
Q ss_pred hhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 256 NIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 256 NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
|||+||||||+|+.+....+.....++.|.+.||+++-++|...
T Consensus 405 NLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~~~~~f~~~ 448 (467)
T KOG4406|consen 405 NLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIEHYKKLFTTP 448 (467)
T ss_pred cceeeecccccccccccccHHHhccHHHHHHHHHHhhhhccCCC
Confidence 99999999999999887778888889999999999999988544
No 46
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=9.4e-27 Score=244.85 Aligned_cols=166 Identities=14% Similarity=0.249 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhc-------CC-CCCCCCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011672 134 TILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNR-------GI-VPDNIDVHCLAGLIKAWFRELPQGVLDGLS 205 (480)
Q Consensus 134 ~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~-------g~-~~~~~Dvh~vAsLLK~fLReLPePLl~~~l 205 (480)
.||++||.. ++..|++++|+||..|.+.+|++|...+-. +. +.+.||+.+|.+.||.|||.||+||+++.+
T Consensus 390 ~fvrkCI~i-~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~L 468 (812)
T KOG1451|consen 390 EFVRKCIDI-LETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYEL 468 (812)
T ss_pred HHHHHHHHH-HHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHH
Confidence 378999995 499999999999999999999998765522 11 226789999999999999999999999999
Q ss_pred HHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCC-hhHHHHH
Q 011672 206 PEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD-PLTALMH 277 (480)
Q Consensus 206 y~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d-~~~~l~~ 277 (480)
+..|+.+. ++++++.|+.+||..||.+|..|+.||.+|+.|+..|.||..||++||||+|+|+.. ...++|+
T Consensus 469 Hk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMd 548 (812)
T KOG1451|consen 469 HKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMD 548 (812)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHc
Confidence 99999883 467899999999999999999999999999999999999999999999999999985 4567777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 011672 278 AVQVMNLLKTLIMKTLREREETA 300 (480)
Q Consensus 278 ~~~v~~~v~~LI~n~~~if~e~~ 300 (480)
++-.+-+|+.||+||-+||....
T Consensus 549 IKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 549 IKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred chhhhhhHHHHHhhhHHHhcCCC
Confidence 77777778999999999996443
No 47
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=1.1e-25 Score=233.82 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=144.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC-------CCCCCCHHHHHHHHHHHHHhCCCCCCC
Q 011672 130 NSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI-------VPDNIDVHCLAGLIKAWFRELPQGVLD 202 (480)
Q Consensus 130 ~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~-------~~~~~Dvh~vAsLLK~fLReLPePLl~ 202 (480)
..||.+|.+|.+|| +++|+.+.||||++|+..++++|++.|+++. .++++.+|++|+|||.|||+||+||||
T Consensus 92 ~~IP~vv~~c~~~l-k~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP 170 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYL-KKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLP 170 (412)
T ss_pred eeCcHHHHHHHHHH-HHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCC
Confidence 47999999999998 7999999999999999999999999999972 356789999999999999999999999
Q ss_pred CCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhccccc-----------CCChhhhHHhhhcc
Q 011672 203 GLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESN-----------KMNARNIAMVFAPN 264 (480)
Q Consensus 203 ~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~N-----------KMta~NLAiVFaPn 264 (480)
.++|+.|+...+ +..++.++..||+.|+.+|.+|+.||+.|+.|++.| ||++.|||+||+|+
T Consensus 171 ~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~ 250 (412)
T KOG2710|consen 171 LELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPN 250 (412)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcch
Confidence 999999998733 234667788899999999999999999999999998 99999999999999
Q ss_pred cCCC---CC-hh-----HHHHHHHHHHHHHHHHHHHHHHhhc
Q 011672 265 MTQM---SD-PL-----TALMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 265 Llr~---~d-~~-----~~l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
|+.. .+ .. ........+.+++..+|.|+..+|.
T Consensus 251 iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 251 ILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred hhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhc
Confidence 9983 11 11 1223445667888999999977775
No 48
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-25 Score=254.05 Aligned_cols=187 Identities=21% Similarity=0.308 Sum_probs=164.3
Q ss_pred ccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHHHHHHH
Q 011672 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHCLAGLI 189 (480)
Q Consensus 113 vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~vAsLL 189 (480)
+||+.|..+ +.+ .+..||.++.+|+.|| +.+|+.+|||||++|...+++.|...|+.+. .....|+|+++++|
T Consensus 602 ~fG~~l~~~-~~~--e~~~vP~i~~~c~~~i-e~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVl 677 (918)
T KOG1453|consen 602 LFGVSLSEL-ARY--EPSTVPFILKKCLREI-EAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVL 677 (918)
T ss_pred cccHHHHHh-hcc--CCCCCCHHHHHHHHHH-HHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHH
Confidence 999999887 433 3678999999999997 8999999999999999999999999999984 44788999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhcc-------------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhh
Q 011672 190 KAWFRELPQGVLDGLSPEQVLQCNT-------------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256 (480)
Q Consensus 190 K~fLReLPePLl~~~ly~~~i~~~~-------------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~N 256 (480)
|+|||+||+|||++.+|+.|+.+.+ +..+.+++..||+.|+.+|++|+.||.+|+.+++.|+|++.|
T Consensus 678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n 757 (918)
T KOG1453|consen 678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN 757 (918)
T ss_pred HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence 9999999999999999999998743 345778999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 011672 257 IAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETASGG 303 (480)
Q Consensus 257 LAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e~~~~~ 303 (480)
||+||||+|+|+++....+.......-.+..+|.++..++.+-....
T Consensus 758 laivF~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~~~~~~~~e 804 (918)
T KOG1453|consen 758 LAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKITLHNLSFLE 804 (918)
T ss_pred ccccccCcccCCCCCcchhhhhccchhhHHHhcchHHHHHhhccccc
Confidence 99999999999998877777666665667888888877776554443
No 49
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.90 E-value=4.5e-24 Score=231.74 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=145.0
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHHHHHhCCCCCCC
Q 011672 128 KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PDNIDVHCLAGLIKAWFRELPQGVLD 202 (480)
Q Consensus 128 ~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~~~Dvh~vAsLLK~fLReLPePLl~ 202 (480)
.+..||.||..||.|+ .++||.-|||||.+|...++..|-+.|-++.. .....+.+|+++||+|||+|++||+|
T Consensus 723 s~~dIPvIVd~CI~FV-TqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft 801 (1186)
T KOG1117|consen 723 SKNDIPVIVDSCIAFV-TQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFT 801 (1186)
T ss_pred cCCCCcEehHHHHHHH-HHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccc
Confidence 3567999999999987 79999999999999999999999999987652 24567999999999999999999999
Q ss_pred CCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHHH
Q 011672 203 GLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTAL 275 (480)
Q Consensus 203 ~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l 275 (480)
.++|..|+++.. +....++|..||..||++|+.||.||.+|..+++.|+|+++|||.||||+||+..-..
T Consensus 802 ~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqd--- 878 (1186)
T KOG1117|consen 802 KELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQD--- 878 (1186)
T ss_pred hhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCc---
Confidence 999999998843 3346789999999999999999999999999999999999999999999999865321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 011672 276 MHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 276 ~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
.+.+++++.||.+|..+|+-.
T Consensus 879 ---ehevnVledLingYvvVF~v~ 899 (1186)
T KOG1117|consen 879 ---EHEVNVLEDLINGYVVVFEVD 899 (1186)
T ss_pred ---hhhhhHHHHHhcCceEEEEec
Confidence 155689999999998877644
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=5.5e-23 Score=212.83 Aligned_cols=167 Identities=17% Similarity=0.305 Sum_probs=143.7
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011672 129 GNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNIDVHCLAGLIKAWFRELPQGVLDGLS 205 (480)
Q Consensus 129 g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~Dvh~vAsLLK~fLReLPePLl~~~l 205 (480)
...||.+|..|+..| |.+||.+|||||++|....+++|+++|-+|... ...|+|+++++||.|||.|-+||||..+
T Consensus 359 aPMIPalVVHCVneI-EaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~ 437 (604)
T KOG3564|consen 359 APMIPALVVHCVNEI-EARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRL 437 (604)
T ss_pred cccchHHHHHHHHHH-HHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchH
Confidence 357999999999997 899999999999999999999999999998743 5679999999999999999999999999
Q ss_pred HHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCC----CChhHH
Q 011672 206 PEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQM----SDPLTA 274 (480)
Q Consensus 206 y~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~----~d~~~~ 274 (480)
...|+.+.. +.++...|..||..||.+|.|||-|+++|++ +..|||+..|||.+|||+++-. +++...
T Consensus 438 ~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~ 516 (604)
T KOG3564|consen 438 RRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTM 516 (604)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHH
Confidence 999998732 3456778889999999999999999999887 8899999999999999999852 345556
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhc
Q 011672 275 LMHAVQVMNLLKTLIM---KTLRERE 297 (480)
Q Consensus 275 l~~~~~v~~~v~~LI~---n~~~if~ 297 (480)
+.+.....++|+.|++ .||+.|-
T Consensus 517 l~dv~~q~rvmkaLlelp~~yWsqfl 542 (604)
T KOG3564|consen 517 LQDVKTQPRVMKALLELPLEYWSQFL 542 (604)
T ss_pred HHhhhhhHHHHHHHHhCCHHHHHHhh
Confidence 6666666677776665 5677763
No 51
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-22 Score=215.46 Aligned_cols=234 Identities=18% Similarity=0.137 Sum_probs=188.2
Q ss_pred cCCCCccceecccccccccccccCCCccccccCCCCCCCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCC
Q 011672 70 EIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGL 149 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~~~lGlp~~~~~~~~~~~~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl 149 (480)
.+.|+..++...++ ..+++-+ ....+..+||.||..+ |..+ .+|.-++.+.-++ -..|.
T Consensus 54 ~~~w~f~~~~~~~l-----~~~~~a~----------~~~~~~~Lfg~pl~ni-c~~~----~lp~p~~d~l~~l-c~kgp 112 (741)
T KOG4724|consen 54 KGAWSFKLKEKLRL-----EKVWIAS----------SNTADSFLFGWPLTNI-CVHF----RLPEPDEDFLLLL-CCKGP 112 (741)
T ss_pred hccchhhhccccch-----hhccCCc----------CCCCCccccCccchhh-cccC----CCCChHHHHHHHH-hhcCc
Confidence 35598888764333 3444332 2235678999999887 6544 2888888887655 68999
Q ss_pred CCCCccccCCCchHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHHHHH
Q 011672 150 KAEGIFRINPENSQEEHVRDQLNRGIVP--DNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC-------NTEEESVE 220 (480)
Q Consensus 150 ~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~-------~~~e~~~~ 220 (480)
.++||||..++...+++||+.|+.|..+ +...+|++|.++|.|||.+|.-+|...+|+.|+.. ..++++++
T Consensus 113 ~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r 192 (741)
T KOG4724|consen 113 CTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIER 192 (741)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHH
Confidence 9999999999999999999999999765 56789999999999999999999999999999866 34567888
Q ss_pred HHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 011672 221 LVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTA---LMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 221 Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~---l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
+..+||..|..+|+||...| .|.+++.+|.|+..|||+|++|++++....... -....++-.++++||+||++||+
T Consensus 193 ~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~e~~k~ln~kv~~l~~flI~nclrifG 271 (741)
T KOG4724|consen 193 QGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSSEFGKGLNGKVPPLPIFLIVNCLRIFG 271 (741)
T ss_pred HHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccChhhhccccCCCCCceeeehhhhHHhhc
Confidence 99999999999999999999 899999999999999999999999987543221 12234556678999999999999
Q ss_pred cccCCCCCCCCCC---------CCCCCCCCCCCChhh
Q 011672 298 ETASGGSSPVSSH---------SSDQQSEEGFDSEQE 325 (480)
Q Consensus 298 e~~~~~~sp~SS~---------sS~~~~~~~~dS~~e 325 (480)
+++.+.+...|-. -+..+.++.|||.+.
T Consensus 272 e~i~~~fr~~s~~s~~~e~~sd~s~~q~Ds~yds~~~ 308 (741)
T KOG4724|consen 272 EDIEGIFRKSSKQSTFKELKSDLSKGQVDSHYDSTHV 308 (741)
T ss_pred ccccceeecccccccchhhhhhhccccccccccccch
Confidence 9999888665432 344566888887664
No 52
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-18 Score=173.22 Aligned_cols=154 Identities=18% Similarity=0.300 Sum_probs=134.6
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-----CC-CCCHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-----PD-NIDVHC 184 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-----~~-~~Dvh~ 184 (480)
+++||.+|+.++. +....-|+++.+|+++| |++|++.-|+||+.|+..+-+-||+.|+.... .+ --|.++
T Consensus 182 rgvfG~~L~~lV~---RE~~~~PIvlrR~~~Ei-EkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nv 257 (442)
T KOG1452|consen 182 RGVFGISLSRLVQ---REPESPPIVLRRLYAEI-EKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNV 257 (442)
T ss_pred ccccchhhHhHhh---cCCCCCchHHHHHHHHH-HhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcce
Confidence 5699999999863 34556789999999997 89999999999999999999999999987532 12 248899
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhc----------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCCh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCN----------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNA 254 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~----------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta 254 (480)
|++++|.|||||||||++...++..+++. +..-+..+|..|+..++..|..++.||..|.-+++.|+|++
T Consensus 258 Itg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~ 337 (442)
T KOG1452|consen 258 ITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTP 337 (442)
T ss_pred eecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCH
Confidence 99999999999999999998888777661 23457789999999999999999999999999999999999
Q ss_pred hhhHHhhhcccCCC
Q 011672 255 RNIAMVFAPNMTQM 268 (480)
Q Consensus 255 ~NLAiVFaPnLlr~ 268 (480)
..||.||||-||-.
T Consensus 338 ~~Ls~i~~P~L~~~ 351 (442)
T KOG1452|consen 338 TRLSLIFAPLLFFC 351 (442)
T ss_pred HHHHHHhhhhHHHh
Confidence 99999999999754
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.71 E-value=1e-17 Score=184.20 Aligned_cols=151 Identities=17% Similarity=0.312 Sum_probs=134.0
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC--C--CCCCHHHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV--P--DNIDVHCLA 186 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~--~--~~~Dvh~vA 186 (480)
...||++|...+ .....||.++.+|++|+ +..|+.+|||||++|+....+.++.+|.+... . -+..+|++|
T Consensus 915 s~~~~~~l~~~~----t~~k~ip~~~ekc~sfi-edtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~va 989 (1100)
T KOG4271|consen 915 SNYFLTPLQDAV----TSEKPIPIFLEKCKSFI-EDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVA 989 (1100)
T ss_pred hhccCCcccccc----cCCcccchHHHHHHHHH-HhccchhhhheecCCCCccHHHHHHHHHhhcccccccccccccccc
Confidence 468999998865 34568999999999987 88999999999999999999999999988432 2 355799999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHH
Q 011672 187 GLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAM 259 (480)
Q Consensus 187 sLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAi 259 (480)
+.+|.||..||+||+|+.++..+.++.. +..+++.+..||+.|+.+++|++.||.+|+....+|.|+..||.+
T Consensus 990 gAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i 1069 (1100)
T KOG4271|consen 990 GALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSI 1069 (1100)
T ss_pred CcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 9999999999999999998888877633 345788999999999999999999999999999999999999999
Q ss_pred hhhcccC
Q 011672 260 VFAPNMT 266 (480)
Q Consensus 260 VFaPnLl 266 (480)
||++.|+
T Consensus 1070 ~~~~~~~ 1076 (1100)
T KOG4271|consen 1070 CFPTLLM 1076 (1100)
T ss_pred cccchHH
Confidence 9999886
No 54
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.65 E-value=1.9e-15 Score=144.74 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCc---cccCCCchHHHHH-HHHHhcCCC-----------CCCCCHHHHHHHHHHHHHhCCC
Q 011672 134 TILLLMQERLYSQGGLKAEGI---FRINPENSQEEHV-RDQLNRGIV-----------PDNIDVHCLAGLIKAWFRELPQ 198 (480)
Q Consensus 134 ~il~~~i~~Lie~~Gl~~EGI---FRisG~~~~I~~L-r~~ld~g~~-----------~~~~Dvh~vAsLLK~fLReLPe 198 (480)
.++..|.++| +.+|+++++| ||..++...++.+ +..|+.+.- ....|+|+++++||.|||.||.
T Consensus 8 ~l~~~~t~eL-k~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 8 GLIHNITEEL-KSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHH-HhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 4778889988 7899999999 9999999999887 566665521 1346999999999999999999
Q ss_pred CCCCC-CCHHHHHhhcc-----HHHHHHHHHhc--CHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCC
Q 011672 199 GVLDG-LSPEQVLQCNT-----EEESVELVKQL--KPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270 (480)
Q Consensus 199 PLl~~-~ly~~~i~~~~-----~e~~~~Ll~~L--P~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d 270 (480)
++++. +.|..|..... .+++..++.++ |+.|..++..++.+|..|+.|+..|+|+.+||+.+|||.+|..++
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~ 166 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT 166 (198)
T ss_pred CccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence 99999 99999998633 46788999988 889999999999999999999999999999999999999997765
Q ss_pred h
Q 011672 271 P 271 (480)
Q Consensus 271 ~ 271 (480)
.
T Consensus 167 ~ 167 (198)
T cd04401 167 G 167 (198)
T ss_pred c
Confidence 3
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.62 E-value=2.5e-15 Score=146.03 Aligned_cols=173 Identities=14% Similarity=0.056 Sum_probs=129.8
Q ss_pred Cccccch-hhhhhccCCCCCCCcHHHHHHH--HHHHHcCCCCC--CCccccCCCchHHHHHHHHHhcCCCC---C-C---
Q 011672 112 SVFGVSA-ESMQCSFDSKGNSVPTILLLMQ--ERLYSQGGLKA--EGIFRINPENSQEEHVRDQLNRGIVP---D-N--- 179 (480)
Q Consensus 112 ~vFGvpL-e~L~~~~d~~g~~VP~il~~~i--~~Lie~~Gl~~--EGIFRisG~~~~I~~Lr~~ld~g~~~---~-~--- 179 (480)
.+||+|+ +.++ +.+...|..+.... +++ ..+-++. .|+||.++...-+.+.++.++..... + .
T Consensus 20 ~l~glp~Ld~vl----~~~~~~p~~i~~~~~~~~~-~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~ 94 (235)
T cd04405 20 QLVGLPLLEELL----DPALVNPKHISYNMDPDVY-TSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPL 94 (235)
T ss_pred HHcCCccHHHHh----cccCCCCcchhhccccccc-ccccccchhhcccccccCcHHHHHHHHHHHhCCccccccccccc
Confidence 3677774 4443 23445565544333 222 3333333 79999999999999999999876421 1 1
Q ss_pred CC--------HHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhc----------cHHHHHHHHHhcCHHHHHHHHHHHhhhh
Q 011672 180 ID--------VHCLAGLIKAWFRELPQGVLDGLSPEQVLQCN----------TEEESVELVKQLKPTEAALLNWAVDLMA 241 (480)
Q Consensus 180 ~D--------vh~vAsLLK~fLReLPePLl~~~ly~~~i~~~----------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~ 241 (480)
++ -.+||.++|.|||+||+||||..+|+.|+.+. .+++++-++..||++||..|+.|+.||+
T Consensus 95 y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~ 174 (235)
T cd04405 95 YSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMA 174 (235)
T ss_pred ccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11 12899999999999999999999999887652 2355666788899999999999999999
Q ss_pred Hhhhcc-------cccCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011672 242 DVVEEE-------ESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 242 ~V~~~s-------~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
+|+++. ..||| |++..|+|.++++++-. ..+..++|.+||+|+.++|.
T Consensus 175 ~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-----~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 175 RAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD-----EGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred HHHhcCccccccccchHH---HHHHHhhhHhcCccccC-----HHHHHHHHHHHHHcchhhhc
Confidence 999994 25677 99999999999998432 34566899999999999995
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.26 E-value=1e-11 Score=128.36 Aligned_cols=160 Identities=22% Similarity=0.301 Sum_probs=127.9
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC--------------------------------
Q 011672 128 KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI-------------------------------- 175 (480)
Q Consensus 128 ~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~-------------------------------- 175 (480)
.+...|.++...+.+. +.+|+.++|++|....+.+.+++++.-+.|.
T Consensus 67 d~~~~~~~f~~~~~~~-e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~ 145 (514)
T KOG4370|consen 67 DGIPLPSFFRYAIDFV-EENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPS 145 (514)
T ss_pred CCCcCcccchhhhhhh-hccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchH
Confidence 3667888888888876 8999999999999999988777766544321
Q ss_pred -----------CCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHHHHHHHHhcCHHHHHHHHHHH
Q 011672 176 -----------VPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC-------NTEEESVELVKQLKPTEAALLNWAV 237 (480)
Q Consensus 176 -----------~~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~-------~~~e~~~~Ll~~LP~~n~~lL~~Li 237 (480)
..+.+.+.+||+|||.|||+||+|||+.++...|..+ .....++.+++.||..||.++.||+
T Consensus 146 V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~ 225 (514)
T KOG4370|consen 146 VARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLN 225 (514)
T ss_pred HHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHH
Confidence 0124568899999999999999999999988877665 3456788999999999999999999
Q ss_pred hhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011672 238 DLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETAS 301 (480)
Q Consensus 238 ~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e~~~ 301 (480)
-|+-+|.+..-.|||+..||+|+..|++--+ ..++..|..|.-.+|+....
T Consensus 226 lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s-------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 226 LHKDKVIEEEYCLKLNKQQIFINLSPTEQES-------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHHHHhhcchhheeeecchHHHHH-------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999999999987211 13455555666666655543
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.12 E-value=4.8e-11 Score=131.78 Aligned_cols=139 Identities=22% Similarity=0.342 Sum_probs=122.2
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCCCCCccc-cCCCchHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHhCCCC-CC
Q 011672 128 KGNSVPTILLLMQERLYSQGGLKAEGIFR-INPENSQEEHVRDQLNRGIVP----DNIDVHCLAGLIKAWFRELPQG-VL 201 (480)
Q Consensus 128 ~g~~VP~il~~~i~~Lie~~Gl~~EGIFR-isG~~~~I~~Lr~~ld~g~~~----~~~Dvh~vAsLLK~fLReLPeP-Ll 201 (480)
.+..||.++..|+.++ +.+|+..+|||| ++|....+..++.++.+|... .+-+... |.+||.|+|.|.+| +|
T Consensus 214 ~~q~iP~i~d~~~~l~-~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f 291 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLE-ERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADF 291 (640)
T ss_pred CcccccHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccC
Confidence 3678999999999965 899999999999 999999999999999998422 2334555 99999999999999 99
Q ss_pred CCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCC
Q 011672 202 DGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQM 268 (480)
Q Consensus 202 ~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~ 268 (480)
+++.+..++.+.. ...+..++..||..+..++.++..|+.+.++.+..|.|++.|+|+||||.++..
T Consensus 292 ~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~ 365 (640)
T KOG3565|consen 292 PFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPV 365 (640)
T ss_pred ccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccC
Confidence 9999999998833 244667899999999999999999999999999999999999999999999743
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.42 E-value=5.4e-06 Score=88.09 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=121.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCcc---ccCCCchHHHHHHH-HHhcCCC------------CCCCCHHHHHHHHHHHHHh
Q 011672 132 VPTILLLMQERLYSQGGLKAEGIF---RINPENSQEEHVRD-QLNRGIV------------PDNIDVHCLAGLIKAWFRE 195 (480)
Q Consensus 132 VP~il~~~i~~Lie~~Gl~~EGIF---RisG~~~~I~~Lr~-~ld~g~~------------~~~~Dvh~vAsLLK~fLRe 195 (480)
|=.+|..|.+.| +.+|+++++|| |-.-+...++.+.. .|..+.. ....++|+++++||-.+..
T Consensus 8 v~~li~~~t~el-K~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 8 VKDLIHACTEEL-KSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHH-HhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 334778888887 78999999998 65556666666544 3344321 1346999999999999999
Q ss_pred CCCCCCCCCCHHHHHhhcc-----HHHHHHHHHh-cC-HHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCC
Q 011672 196 LPQGVLDGLSPEQVLQCNT-----EEESVELVKQ-LK-PTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQM 268 (480)
Q Consensus 196 LPePLl~~~ly~~~i~~~~-----~e~~~~Ll~~-LP-~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~ 268 (480)
||..+++.+.|..|....+ .+++..++.+ || +.+..++.-++.+|..|+.|+..|+|+.+.|+..+|+=+|-.
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 9999999999999987633 4567777755 53 567789999999999999999999999999999999999865
Q ss_pred CChh---------HHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 269 SDPL---------TALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 269 ~d~~---------~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
.+.. ..+..-...-+.+.-|+--+++.+
T Consensus 167 ~~~~~~~~~~~f~~gy~~W~~aadA~~HLflAyLRs~ 203 (420)
T PF08101_consen 167 PDFGKDSGFNSFEEGYKAWIRAADALEHLFLAYLRSL 203 (420)
T ss_pred CCcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4322 222333334455556666666654
No 59
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.75 E-value=1.5e-05 Score=87.11 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=110.4
Q ss_pred CCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHH----HHHHHhc-CC--CCCCCCH
Q 011672 110 SASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEH----VRDQLNR-GI--VPDNIDV 182 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~----Lr~~ld~-g~--~~~~~Dv 182 (480)
....||+||+.. |. .+..+|.-+..... |++..+..++++||..-..+-+.+ ....+.. |. .++...+
T Consensus 413 ~kv~fdaPlS~~-c~---d~gk~prPlq~~~t-ll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv 487 (741)
T KOG4724|consen 413 AKVPFDAPLSVF-CA---DQGKTPRPLQIQST-LLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPV 487 (741)
T ss_pred hhCcCCCchhhc-cc---ccCCCCCChhhhhH-HHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCc
Confidence 456899999886 53 23445554443222 457889999999998433332222 2222222 43 3456789
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHhhc---cH----HHHHH--------HHHhcCHHHHHHHHHHHhhhhHhhhcc
Q 011672 183 HCLAGLIKAWFRELPQGVLDGLSPEQVLQCN---TE----EESVE--------LVKQLKPTEAALLNWAVDLMADVVEEE 247 (480)
Q Consensus 183 h~vAsLLK~fLReLPePLl~~~ly~~~i~~~---~~----e~~~~--------Ll~~LP~~n~~lL~~Li~fL~~V~~~s 247 (480)
|.+|+++|.|+|++|..++..+.+.++..+. .+ ++++. .....|..+..+.+..+.-...+..++
T Consensus 488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~ns 567 (741)
T KOG4724|consen 488 HTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENS 567 (741)
T ss_pred hHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccc
Confidence 9999999999999999999999999998872 22 33333 334467777777777777777788999
Q ss_pred cccCCChhhhHHhhhcccCCCCC
Q 011672 248 ESNKMNARNIAMVFAPNMTQMSD 270 (480)
Q Consensus 248 ~~NKMta~NLAiVFaPnLlr~~d 270 (480)
..+.|+..|++.|..|+++.-.+
T Consensus 568 e~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 568 EETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred ccccccccccCCCCCccccchhh
Confidence 99999999999999999975543
No 60
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.31 E-value=0.006 Score=71.24 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=121.3
Q ss_pred ccccchhhhhhccCCCCCCCcHHHHH-HHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC-C-------CC-CCCH
Q 011672 113 VFGVSAESMQCSFDSKGNSVPTILLL-MQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI-V-------PD-NIDV 182 (480)
Q Consensus 113 vFGvpLe~L~~~~d~~g~~VP~il~~-~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~-~-------~~-~~Dv 182 (480)
++|+++..+... .......|.++.. +.... ...|....++||..+....++..+..++... . .. ..++
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~~vs~~~~~e~-~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~ 539 (918)
T KOG1453|consen 462 ILGTDLTTLSVN-KDLNSNRPLSVSRSLERES-RSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEV 539 (918)
T ss_pred ccccCccccccc-hhhhcccCcccccchhccc-CCCCcccccccccCCccccccchhhccCccccchhccCCCccccccc
Confidence 899998776221 2234567778777 55543 7889999999999999999999999998743 1 11 3355
Q ss_pred HHHHHHHHHHHHhC--CCCCCCCCCHHHHHhh-----------------------ccH-------HHHHHHHH----hcC
Q 011672 183 HCLAGLIKAWFREL--PQGVLDGLSPEQVLQC-----------------------NTE-------EESVELVK----QLK 226 (480)
Q Consensus 183 h~vAsLLK~fLReL--PePLl~~~ly~~~i~~-----------------------~~~-------e~~~~Ll~----~LP 226 (480)
...++.+|.|+|.+ |.+......|..++.. ... ..+.++.. .+|
T Consensus 540 ~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP 619 (918)
T KOG1453|consen 540 NLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVP 619 (918)
T ss_pred hhccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCC
Confidence 66677999999999 9998888888877721 011 44566777 799
Q ss_pred HHHHHHHHHHHhhhhHhhhccccc-CCCh-hhhHHhhhc----ccCCCCCh
Q 011672 227 PTEAALLNWAVDLMADVVEEEESN-KMNA-RNIAMVFAP----NMTQMSDP 271 (480)
Q Consensus 227 ~~n~~lL~~Li~fL~~V~~~s~~N-KMta-~NLAiVFaP----nLlr~~d~ 271 (480)
.....+|.++..|+.+|.....+| .|+. +||..+|++ +++...+.
T Consensus 620 ~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~di 670 (918)
T KOG1453|consen 620 FILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDI 670 (918)
T ss_pred HHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCCh
Confidence 999999999999999999999998 8888 999999999 55665554
No 61
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=96.01 E-value=0.022 Score=65.10 Aligned_cols=184 Identities=15% Similarity=0.065 Sum_probs=122.9
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCC---ccccCC-CchHHHHHHHHHh-cCCC---C-CCCC
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEG---IFRINP-ENSQEEHVRDQLN-RGIV---P-DNID 181 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EG---IFRisG-~~~~I~~Lr~~ld-~g~~---~-~~~D 181 (480)
..+||.|..--+... ..-|.|..+-+.+| +..|+..|| |-|.++ +...|+.-...|+ .|.. + +.++
T Consensus 354 ss~~~rps~g~le~~----d~sp~~~~knL~~l-~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ 428 (1100)
T KOG4271|consen 354 SSVLGRPSLGALENS----DGSPNIDEKNLVIL-GKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQ 428 (1100)
T ss_pred hhhhcCcchhhhhhh----cCCcccchhhhhhh-hhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcC
Confidence 457777632221212 24688888888765 899999999 999998 6666665555554 3431 1 3457
Q ss_pred HH--HHHHHHH--HHHHhCCCCCCCCCCHHHHHhh---------ccHHHH-HHHHHh--cCHHHHH----HHHHHHhhhh
Q 011672 182 VH--CLAGLIK--AWFRELPQGVLDGLSPEQVLQC---------NTEEES-VELVKQ--LKPTEAA----LLNWAVDLMA 241 (480)
Q Consensus 182 vh--~vAsLLK--~fLReLPePLl~~~ly~~~i~~---------~~~e~~-~~Ll~~--LP~~n~~----lL~~Li~fL~ 241 (480)
|| .|...++ .-||.++..+.+...+..+..+ .++..+ ..++.. .|.+|+. ++..|+..+.
T Consensus 429 ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~ 508 (1100)
T KOG4271|consen 429 PHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMM 508 (1100)
T ss_pred cchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHh
Confidence 88 5777777 7788888888887766666544 123333 234444 6777665 7778888888
Q ss_pred HhhhcccccCCChh-hhHHhhhcc-cCCCC---------C--------h-h-------HHHHHHH-HHHHHHHHHHHHHH
Q 011672 242 DVVEEEESNKMNAR-NIAMVFAPN-MTQMS---------D--------P-L-------TALMHAV-QVMNLLKTLIMKTL 293 (480)
Q Consensus 242 ~V~~~s~~NKMta~-NLAiVFaPn-Llr~~---------d--------~-~-------~~l~~~~-~v~~~v~~LI~n~~ 293 (480)
.+..++..|.|++. ..+.|++|- |++.+ . . + .+...+. .++.+|..++..+-
T Consensus 509 ~g~~~s~~ni~n~~~~s~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~ 588 (1100)
T KOG4271|consen 509 CGDPFSADNILNPVLASAACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYA 588 (1100)
T ss_pred cCCchhhhhhcChhhHHHHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcch
Confidence 89999999999999 999999994 55511 0 0 0 1111122 36778888888887
Q ss_pred Hhhccc
Q 011672 294 REREET 299 (480)
Q Consensus 294 ~if~e~ 299 (480)
.+|.+.
T Consensus 589 si~~~~ 594 (1100)
T KOG4271|consen 589 SIFLDN 594 (1100)
T ss_pred hhhccc
Confidence 777655
No 62
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=94.59 E-value=0.011 Score=64.65 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=49.4
Q ss_pred hhhhHhhhcccccCCChhhhHHhhhcccCCCCChh---------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 011672 238 DLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPL---------TALMHAVQVMNLLKTLIMKTLRERE 297 (480)
Q Consensus 238 ~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~---------~~l~~~~~v~~~v~~LI~n~~~if~ 297 (480)
.||..|+.+.....|-+.|||+||||||+|.+... .++-.+.+++.++..+|.++.+...
T Consensus 2 rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF 70 (670)
T KOG1449|consen 2 RHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLF 70 (670)
T ss_pred cchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccceec
Confidence 68999999999999999999999999999976432 3445578888999888888866544
No 63
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=88.96 E-value=0.21 Score=35.35 Aligned_cols=29 Identities=52% Similarity=0.927 Sum_probs=24.1
Q ss_pred CCCCccceecccccccc-cccccCCCcccc
Q 011672 71 IGCPTNVRHITHVTFDR-FNGFLGLPVEFE 99 (480)
Q Consensus 71 igwp~~vr~v~~i~~~r-~~~~lGlp~~~~ 99 (480)
|+.|++++|++|+.++. ..++.|+|.+-+
T Consensus 1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~ 30 (36)
T smart00285 1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWE 30 (36)
T ss_pred CCCCCCCcEEEEeeECCCCCccCCCCHHHH
Confidence 78999999999999987 556888886543
No 64
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=87.40 E-value=0.05 Score=59.61 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=93.2
Q ss_pred CCCCCCcH-HHHHHHHHHHHc----CC-CCCCCccccCCCchHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHHH
Q 011672 127 SKGNSVPT-ILLLMQERLYSQ----GG-LKAEGIFRINPENSQEEHVRDQLNRGIVP------DNIDVHCLAGLIKAWFR 194 (480)
Q Consensus 127 ~~g~~VP~-il~~~i~~Lie~----~G-l~~EGIFRisG~~~~I~~Lr~~ld~g~~~------~~~Dvh~vAsLLK~fLR 194 (480)
+.|..||. ++.+|+.-+ +. ++ +...|.|++. .|.|..+ -.-|+..+..+++-|+|
T Consensus 220 ~~G~~lpas~~g~~C~s~-~~~~q~~ei~~~~g~l~a~------------~D~gae~d~~af~~p~di~v~S~d~dp~s~ 286 (670)
T KOG1449|consen 220 GLGRGLPASEWGRGCVSH-HAVTQHREILDGNGVLSAV------------EDEGAEVDGEAFRWPSDIVVESWDMDPYSR 286 (670)
T ss_pred ccccccchhhhccchhcc-ccchhccCCcccCcceecc------------ccccccccccccCCccceeeeccccChhhh
Confidence 34788998 777766632 33 11 2333555553 4444322 23478889999999999
Q ss_pred hCCCCCCCCCCHHHHHhh-ccHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhH
Q 011672 195 ELPQGVLDGLSPEQVLQC-NTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLT 273 (480)
Q Consensus 195 eLPePLl~~~ly~~~i~~-~~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~ 273 (480)
.+|.|+.. ..|+.=-.. ...+...-.+...++.|+.+-++|..||...+.-. .+++|++.|+++|++..+.
T Consensus 287 Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~~~~~r~pptL~ 358 (670)
T KOG1449|consen 287 QLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWSPNLFRPPPTLN 358 (670)
T ss_pred hcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecCCCCCCCCCCCC
Confidence 99999544 222211111 11222334456689999999999999999877532 8999999999999875432
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHhhccc
Q 011672 274 ALM-----HAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 274 ~l~-----~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
... .-.....++.+.|++.-.-|..+
T Consensus 359 ~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~ 389 (670)
T KOG1449|consen 359 GADTHLLSGLNVHTAICDFFIENSESLFVND 389 (670)
T ss_pred chhhhhcccCCcceeecccchhhhhhhhhcc
Confidence 211 11122344566777765555444
No 65
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=84.72 E-value=0.58 Score=34.20 Aligned_cols=20 Identities=50% Similarity=0.901 Sum_probs=18.2
Q ss_pred ccCCCCccceeccccccccc
Q 011672 69 MEIGCPTNVRHITHVTFDRF 88 (480)
Q Consensus 69 ~~igwp~~vr~v~~i~~~r~ 88 (480)
++|++|++++|++|+-++..
T Consensus 1 ~~IS~Ptnf~H~~HvG~d~~ 20 (42)
T cd00132 1 MEISTPTDFKHISHVGWDGV 20 (42)
T ss_pred CcccCCCCcCcccccCCCCC
Confidence 57999999999999998876
No 66
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=79.47 E-value=1.1 Score=33.40 Aligned_cols=29 Identities=52% Similarity=0.848 Sum_probs=24.1
Q ss_pred cCCCCccceecccccccccc-cccCCCccc
Q 011672 70 EIGCPTNVRHITHVTFDRFN-GFLGLPVEF 98 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~-~~lGlp~~~ 98 (480)
.|+.|++++|+.|+.++.-. +|.|+|.+-
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW 31 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEW 31 (46)
T ss_pred ccCCCCCceeeeEeeECCCCCcccCCCHHH
Confidence 68999999999999999743 488887654
No 67
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=74.76 E-value=1 Score=35.21 Aligned_cols=30 Identities=47% Similarity=0.801 Sum_probs=19.8
Q ss_pred cCCCCccceecccccccccccc-cCCCcccc
Q 011672 70 EIGCPTNVRHITHVTFDRFNGF-LGLPVEFE 99 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~~~-lGlp~~~~ 99 (480)
+||-|+++||+.||.++...+. .|+|.+-+
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~ 31 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWE 31 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEEES--HHHH
T ss_pred CCCCCCCCcceeeeccCCCccccccCCHHHH
Confidence 5899999999999999886664 48876644
No 68
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=38.91 E-value=87 Score=34.07 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhc
Q 011672 181 DVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCN 213 (480)
Q Consensus 181 Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~~ 213 (480)
|+|..+++.|.|+|.+|+|++|.++..-+-.|.
T Consensus 119 D~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 119 DAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 899999999999999999999988777666664
No 69
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=34.48 E-value=37 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.512 Sum_probs=15.3
Q ss_pred eEeecCCCCCCCCCCCCCCCCC
Q 011672 5 VMVTKGSGCAGGDGGNGKATKG 26 (480)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~ 26 (480)
|-|+-|||++--|||+++..+|
T Consensus 35 ~si~~ggGsaqtgGGs~~~~~g 56 (56)
T TIGR03602 35 FSIATGGGNAQTGGGAAAGQGG 56 (56)
T ss_pred EEEEecCcccccCCCccCCCCC
Confidence 4567778888877777766543
No 70
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=32.36 E-value=20 Score=40.25 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhc-CC---CCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Q 011672 134 TILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNR-GI---VPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQV 209 (480)
Q Consensus 134 ~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~-g~---~~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~ 209 (480)
.-..++..+. .+++....|.|+.+| +.+..+++.-+. +. +..+...+++.++++.+++.+ +|.++.-|+..
T Consensus 60 ~~~~~~~~~~-~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e~q~~ 134 (577)
T KOG4270|consen 60 MDSEQLRLFQ-AQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVEFQPD 134 (577)
T ss_pred cchhhhhhhh-hhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhhhccc
Confidence 3345555554 678899999999999 445555544433 33 345678999999999999999 77776655555
Q ss_pred HhhccHHHHH-------H--HHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCC--hhHHHHHH
Q 011672 210 LQCNTEEESV-------E--LVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD--PLTALMHA 278 (480)
Q Consensus 210 i~~~~~e~~~-------~--Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d--~~~~l~~~ 278 (480)
+.+....... + -..-.+..|. +-+++.||... ..++|.-.+...+|.++--.+.- ...++...
T Consensus 135 ~~rrals~~~~vfgv~~~s~Q~s~~~~~n~--vp~i~~l~~~~----~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g 208 (577)
T KOG4270|consen 135 YHRRALSASETVFGVSTEAMQLSYDPRGNF--VPLILHLLQSG----RLLLEGGLKEEGLFRINGEASKVERLREALDCG 208 (577)
T ss_pred cccccccchhhhhcchHHhhhcccccCCCc--chhhhHhhhhh----hhhhhcCccccceeccCCCchHHHHHHHHHcCC
Confidence 5432111110 0 1122355555 56666766654 56677778888899888765431 11222111
Q ss_pred HH------HHHHHHHHHHHHHHhhccccCC
Q 011672 279 VQ------VMNLLKTLIMKTLREREETASG 302 (480)
Q Consensus 279 ~~------v~~~v~~LI~n~~~if~e~~~~ 302 (480)
.. =...+..||.-|+++..+.+..
T Consensus 209 ~v~~~~~iDvH~~agllKayLRELPepvl~ 238 (577)
T KOG4270|consen 209 VVPDQLYIDVHCLAGLLKAYLRELPEPVLT 238 (577)
T ss_pred cccccccCCHHHHHHHHHHHHHhCCCcCCC
Confidence 11 1234778888888888777543
No 71
>PF00740 Parvo_coat: Parvovirus coat protein VP2 This family is a subset of the SCOP family; InterPro: IPR001403 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. The Parvovirus coat protein VP1 together with VP2 forms a capsomer. Both of these proteins are formed from the same transcript using alternative translation start codons. As a result, VP1 and VP2 differ only in the N terminus region. VP2 is involved in packaging the viral DNA []. The mature viron contains three capsid proteins VP1, VP2, and VP3 and a noncapsid protein NS1. VP3 may arise from a third start codon with a favorable translation initiation context which is present at position 3067 in the ChPV genome and which has been described in the goose and Muscovy duck parvoviruses [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1C8G_A 1C8F_A 1C8E_A 1FPV_A 3KIC_L 3KIE_Q 3UX1_A 2G8G_A 1VU0_U 3SHM_L ....
Probab=26.71 E-value=22 Score=39.64 Aligned_cols=16 Identities=50% Similarity=0.964 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 011672 11 SGCAGGDGGNGKATKG 26 (480)
Q Consensus 11 ~~~~~~~g~~~~~~~~ 26 (480)
||+||||||+|...|+
T Consensus 1 G~gg~GggGvg~stG~ 16 (529)
T PF00740_consen 1 GGGGGGGGGVGNSTGG 16 (529)
T ss_dssp ---EETBCETTS-SS-
T ss_pred CCCCCCCCCCCccccc
Confidence 5677777777777754
No 72
>PLN02705 beta-amylase
Probab=25.02 E-value=52 Score=37.32 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.8
Q ss_pred hHHHHHHHHhc
Q 011672 38 SLVAFVMAALR 48 (480)
Q Consensus 38 s~~~~~~~~~~ 48 (480)
.+.+.+.+=+|
T Consensus 97 ai~~ki~aglr 107 (681)
T PLN02705 97 AITSRMLAGLR 107 (681)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 73
>PHA02664 hypothetical protein; Provisional
Probab=22.93 E-value=1e+02 Score=32.46 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=7.6
Q ss_pred CCcc--ccCCCchHH
Q 011672 152 EGIF--RINPENSQE 164 (480)
Q Consensus 152 EGIF--RisG~~~~I 164 (480)
.+|| |++|..-++
T Consensus 206 nvifymrlsg~mvrv 220 (534)
T PHA02664 206 NVIFYMRLSGTMVRV 220 (534)
T ss_pred ceEEEEEecCcEEEE
Confidence 3566 666665544
Done!