Query 011672
Match_columns 480
No_of_seqs 374 out of 1632
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tx4_A P50-rhogap; complex (GT 100.0 1.5E-41 5E-46 322.2 18.6 187 108-296 3-198 (198)
2 1ow3_A RHO-GTPase-activating p 100.0 7.6E-41 2.6E-45 327.2 18.6 191 107-299 38-237 (242)
3 3msx_B RHO GTPase-activating p 100.0 1.5E-40 5.3E-45 315.4 16.9 184 107-296 6-201 (201)
4 2ee4_A RHO GTPase activating p 100.0 1.7E-40 5.9E-45 317.3 14.5 186 109-299 8-205 (209)
5 3fk2_A Glucocorticoid receptor 100.0 3.2E-40 1.1E-44 323.5 16.6 185 109-298 49-245 (246)
6 3byi_A RHO GTPase activating p 100.0 2.4E-40 8.2E-45 317.4 15.4 185 110-298 16-213 (214)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 6.7E-40 2.3E-44 311.7 17.9 182 111-296 6-202 (202)
8 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 4.9E-40 1.7E-44 318.5 15.9 188 109-301 17-224 (229)
9 1pbw_A Rhogap domain, phosphat 100.0 1.5E-40 5.1E-45 319.7 10.0 185 110-299 4-201 (216)
10 3eap_A RHO GTPase-activating p 100.0 7.2E-39 2.5E-43 318.3 12.8 221 73-297 20-258 (271)
11 3kuq_A RHO GTPase-activating p 100.0 4.5E-38 1.5E-42 304.9 16.8 182 108-293 15-226 (228)
12 1f7c_A Rhogap protein; GTPase 100.0 1.3E-38 4.3E-43 309.3 12.6 188 110-299 15-219 (231)
13 2ovj_A Mgcracgap, RAC GTPase-a 100.0 6.2E-37 2.1E-41 291.4 19.7 177 117-298 5-196 (201)
14 2xs6_A Phosphatidylinositol 3- 100.0 1.7E-38 5.8E-43 305.9 2.3 179 109-295 18-210 (214)
15 3cxl_A N-chimerin; SH2, RHO-GA 100.0 9.4E-36 3.2E-40 315.7 15.7 183 110-296 266-463 (463)
16 3qis_A Inositol polyphosphate 100.0 8.3E-35 2.8E-39 300.4 15.9 160 130-290 197-361 (366)
17 2odb_B Serine/threonine-protei 91.8 0.045 1.5E-06 37.5 0.8 29 70-98 1-30 (35)
18 2qme_I CRIB domain of the seri 91.1 0.073 2.5E-06 36.7 1.3 29 70-98 1-30 (36)
19 2ov2_I Serine/threonine-protei 83.5 0.45 1.5E-05 32.5 1.5 30 70-99 1-31 (35)
20 1f3m_A Serine/threonine-protei 83.1 0.3 1E-05 39.6 0.6 58 68-142 3-61 (80)
21 1cee_B Wiskott-aldrich syndrom 78.1 0.95 3.3E-05 34.4 1.9 32 66-97 4-37 (59)
22 2pk2_A Cyclin-T1, protein TAT; 43.1 5.1 0.00017 40.6 0.0 12 81-95 320-331 (358)
23 2lqh_B Forkhead box O3, FOXO3A 45.3 6.4 0.00022 28.1 0.0 6 10-15 25-30 (52)
24 3u85_B Histone-lysine N-methyl 25.9 27 0.00093 20.9 1.2 9 10-18 10-18 (21)
25 1rp3_B Anti sigma factor FLGM; 21.5 93 0.0032 25.0 4.1 33 160-194 56-88 (88)
26 4h5l_A Nucleoprotein; nucleoca 20.2 1E+02 0.0035 29.8 4.7 95 160-263 19-118 (253)
No 1
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=1.5e-41 Score=322.20 Aligned_cols=187 Identities=22% Similarity=0.323 Sum_probs=168.0
Q ss_pred CCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC---CCCHHH
Q 011672 108 SASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD---NIDVHC 184 (480)
Q Consensus 108 ~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~---~~Dvh~ 184 (480)
..+.++||++|+.++ ........||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|...+ ..|+|+
T Consensus 3 ~~~~~vFG~~L~~~~-~~~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~ 80 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQ-EKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHL 80 (198)
T ss_dssp CCTTCCTTSCHHHHH-HHSTTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred CCCCCccCCcHHHHH-hhCCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchH
Confidence 345789999999985 33333358999999999998 6899999999999999999999999999997543 358999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCN------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA 258 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA 258 (480)
+|++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 81 ~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa 160 (198)
T 1tx4_A 81 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 160 (198)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 99999999999999999999999999873 356788999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 259 MVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 259 iVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
+||||+|+|+++....+......+.+++.||+|+..+|
T Consensus 161 ~vf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 161 VVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred hhhcccccCCCCccccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999999877777777888899999999998886
No 2
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=7.6e-41 Score=327.20 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=169.5
Q ss_pred CCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC---CCCHH
Q 011672 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD---NIDVH 183 (480)
Q Consensus 107 ~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~---~~Dvh 183 (480)
+....++||++|+.++ ........||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|...+ ..|+|
T Consensus 38 ~~~~~~vFG~~L~~~~-~~~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~ 115 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQ-EKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115 (242)
T ss_dssp -CCTTCCSSSCHHHHH-HHSTTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTH
T ss_pred CCCCCCccCCcHHHHH-hhcCCCCCCCHHHHHHHHHH-HHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchH
Confidence 3456789999999985 33334468999999999998 7899999999999999999999999999997543 24999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 184 CLAGLIKAWFRELPQGVLDGLSPEQVLQCN------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 184 ~vAsLLK~fLReLPePLl~~~ly~~~i~~~------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
++|++||+|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||+++||
T Consensus 116 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999999873 35678899999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 258 AMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 258 AiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
|+||||+|+|+++....+.....++.++++||+|+..+|.+.
T Consensus 196 Aivf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~~~~iF~~~ 237 (242)
T 1ow3_A 196 AVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSP 237 (242)
T ss_dssp HHHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHTHHHHC---
T ss_pred HHhhcchhCCCCCccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999887777777888899999999999999653
No 3
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=315.38 Aligned_cols=184 Identities=22% Similarity=0.335 Sum_probs=159.9
Q ss_pred CCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--CCCCHHH
Q 011672 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--DNIDVHC 184 (480)
Q Consensus 107 ~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~~~Dvh~ 184 (480)
+...+++||++|+.+. ..+ .||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|... +..|+|+
T Consensus 6 ~~~~~~vFG~~L~~~~-~~~----~vP~~v~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~ 79 (201)
T 3msx_B 6 SPMPGQLFGISLPNIC-END----NLPKPVLDMLFFL-NQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFV 79 (201)
T ss_dssp ----CCCTTSCHHHHS-GGG----CCCHHHHHHHHHH-HHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHH
T ss_pred CCCCCCeeCCcHHHHh-cCC----CCCHHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHH
Confidence 3456789999999984 332 5999999999998 789999999999999999999999999998743 5679999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||.|||+||+||+|.++|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|++|++.|||+++||
T Consensus 80 va~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (201)
T 3msx_B 80 IASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNL 159 (201)
T ss_dssp HHHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhh
Confidence 999999999999999999999999998732 4567889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChhH---HHHHHHHHHHHHHHHHHHHHHhh
Q 011672 258 AMVFAPNMTQMSDPLT---ALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 258 AiVFaPnLlr~~d~~~---~l~~~~~v~~~v~~LI~n~~~if 296 (480)
|+||||+|+|+++... ......++..+++.||+|+.++|
T Consensus 160 a~vf~P~ll~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 160 AVCVAPSILWPPASSSPELENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999999876432 22334566677999999999887
No 4
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.7e-40 Score=317.30 Aligned_cols=186 Identities=18% Similarity=0.329 Sum_probs=162.1
Q ss_pred CCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC----CCCHHH
Q 011672 109 ASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD----NIDVHC 184 (480)
Q Consensus 109 ~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~----~~Dvh~ 184 (480)
...++||++|+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|++|...+ .+|+|+
T Consensus 8 ~~~~~FG~~L~~~~-~---~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2ee4_A 8 WESNYFGMPLQDLV-T---AEKPIPLFVEKCVEFI-EDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA 82 (209)
T ss_dssp SCCSSSSSCHHHHS-C---SSCCSCHHHHHHHHHH-HHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHH
T ss_pred CCCCeeCCcHHHHH-h---cCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHH
Confidence 35689999999984 2 2457999999999998 6899999999999999999999999999986542 479999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||+|||+||+||||.++|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 83 va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 83 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 999999999999999999999999998732 3567889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 258 AMVFAPNMTQMSDPL-TALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 258 AiVFaPnLlr~~d~~-~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
|+||||+|+|+.... ..+..+...+.+|+.||+|+..+|.+.
T Consensus 163 aivf~P~L~~~~~~~~~~l~~~~~~~~vve~LI~~~~~iF~~~ 205 (209)
T 2ee4_A 163 SICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNG 205 (209)
T ss_dssp HHHHHHHHSCCCCCSSCCSCCCTTHHHHHHHHHHTHHHHTTCC
T ss_pred HHHhcccccCCCCccHHHHHHhHHHHHHHHHHHHhhHHHcCCC
Confidence 999999999986432 223333456689999999999999644
No 5
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=323.54 Aligned_cols=185 Identities=18% Similarity=0.322 Sum_probs=165.2
Q ss_pred CCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC----CCCCHHH
Q 011672 109 ASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP----DNIDVHC 184 (480)
Q Consensus 109 ~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~----~~~Dvh~ 184 (480)
...++||+||+.++ . .+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|... .++|+|+
T Consensus 49 ~~~~vFGv~L~~~~-~---~~~~vP~iv~~~i~~l-~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~ 123 (246)
T 3fk2_A 49 WESNYFGVPLTTVV-T---PEKPIPIFIERCIEYI-EATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNT 123 (246)
T ss_dssp CCCSSTTSCGGGGC-C---SSSCSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHH
T ss_pred cCCCeeCCCHHHHh-c---CCCCCChHHHHHHHHH-HHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHH
Confidence 45789999999985 2 3458999999999998 789999999999999999999999999998643 2469999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||.|||+||+||||+.+|+.|+.+.+ ...++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 124 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NL 203 (246)
T 3fk2_A 124 VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203 (246)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHh
Confidence 999999999999999999999999998743 4568889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 258 AMVFAPNMTQMSD-PLTALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 258 AiVFaPnLlr~~d-~~~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
|+||||+|+|+.. ....+.....++.+|+.||+|+..+|.+
T Consensus 204 Aivf~P~Llrp~~~~~~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 204 SICFWPTLMRPDFSTMDALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHHHCCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HHHhcccccCCCCccHHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 9999999999764 3455667778889999999999999963
No 6
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=317.38 Aligned_cols=185 Identities=20% Similarity=0.327 Sum_probs=161.8
Q ss_pred CCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC--C---CCCHHH
Q 011672 110 SASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP--D---NIDVHC 184 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~--~---~~Dvh~ 184 (480)
+.++||++|+.+.. . .+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|... + ..|+|+
T Consensus 16 ~~~vFG~~L~~~~~-~--~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~ 91 (214)
T 3byi_A 16 KDQIFGSHLHKVCE-R--ENSTVPWFVKQCIEAV-EKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHV 91 (214)
T ss_dssp CCCSTTSCHHHHHH-H--HTCSSCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHH
T ss_pred cCCccCCcHHHHHH-H--cCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHH
Confidence 46799999999853 2 3568999999999998 689999999999999999999999999998633 2 249999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||.|||+||+||||.++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 92 va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NL 171 (214)
T 3byi_A 92 VTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171 (214)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHh
Confidence 999999999999999999999999998732 4568899999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 258 AMVFAPNMTQMSDPL-TALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 258 AiVFaPnLlr~~d~~-~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
|+||||+|+|+.... ....+......+++.||+|+..+|++
T Consensus 172 a~vf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~ 213 (214)
T 3byi_A 172 GIVFGPTLLRAENETGNMAIHMVYQNQIAELMLSEYSKIFGS 213 (214)
T ss_dssp HHHHHHHHHCCTTSSSCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HHHhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999987543 22344556678999999999999975
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=311.68 Aligned_cols=182 Identities=20% Similarity=0.309 Sum_probs=160.4
Q ss_pred CCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcC-C--CC---CCCCHHH
Q 011672 111 ASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRG-I--VP---DNIDVHC 184 (480)
Q Consensus 111 ~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g-~--~~---~~~Dvh~ 184 (480)
.++||++|+.+.... +..||.+|.+|+++| +++|+++|||||++|+..+|++|++.||++ . .. ...|+|+
T Consensus 6 ~~vFG~~L~~~~~~~---~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~ 81 (202)
T 2osa_A 6 KKVYSCDLTTLVKAH---TTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI 81 (202)
T ss_dssp -CCTTSCHHHHHHHH---TCSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHH
T ss_pred CCccCCChHHHHHHc---CCCCCcHHHHHHHHH-HHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHH
Confidence 579999999985432 467999999999998 789999999999999999999999999984 2 12 2369999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||+|||+||+||+|.++|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 82 va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NL 161 (202)
T 2osa_A 82 ITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161 (202)
T ss_dssp HHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 999999999999999999999999998732 4568889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 258 AMVFAPNMTQMSD--PLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 258 AiVFaPnLlr~~d--~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
|+||||+|+|+++ ....+.+......+++.||+|+..+|
T Consensus 162 a~vf~P~Ll~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 162 GIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHccccCCCCCccHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 9999999999865 34456667778899999999998876
No 8
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=318.47 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=155.1
Q ss_pred CCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC------CCCH
Q 011672 109 ASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD------NIDV 182 (480)
Q Consensus 109 ~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~------~~Dv 182 (480)
..+++||++|++++. . .+..||.+|.+|++|| +++|+ +|||||++|+..+|++|++.||+|...+ ..|+
T Consensus 17 ~~~~vFG~~L~~~~~-~--~~~~vP~iv~~~i~~i-~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 17 QGERVFGCDLGEHLL-N--SGFEVPQVLQSCTAFI-ERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp -CCCSTTSCHHHHHH-H--HCCSSCHHHHHHHHHH-HHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCeECcchHHHHH-h--cCCCCCHHHHHHHHHH-HHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 356899999998753 2 3567999999999998 78999 8999999999999999999999986431 1499
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChh
Q 011672 183 HCLAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNAR 255 (480)
Q Consensus 183 h~vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~ 255 (480)
|+||++||+|||+||+||||.++|+.|+++.+ ...++.++.+||+.|+.+|+||+.||++|++|++.|||++.
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 99999999999999999999999999998732 35678899999999999999999999999999999999999
Q ss_pred hhHHhhhcccCCCCCh-------hHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011672 256 NIAMVFAPNMTQMSDP-------LTALMHAVQVMNLLKTLIMKTLREREETAS 301 (480)
Q Consensus 256 NLAiVFaPnLlr~~d~-------~~~l~~~~~v~~~v~~LI~n~~~if~e~~~ 301 (480)
|||+||||+|+|+++. ...+.+......++++||+|+..+|.+...
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~ 224 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRIS 224 (229)
T ss_dssp HHHHHHHHHHCCC-------------------CHHHHHHHHHTHHHHTC----
T ss_pred HHHHHHhccccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHHHhCCCcHH
Confidence 9999999999998753 223444555678999999999999976643
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.5e-40 Score=319.68 Aligned_cols=185 Identities=17% Similarity=0.294 Sum_probs=151.6
Q ss_pred CCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHHHH
Q 011672 110 SASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHCLA 186 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~vA 186 (480)
...+||++|+++. .....+..||.+|.+|++|| +++|+++|||||++|+..+ ++|++.||+|. ....+|+|+||
T Consensus 4 d~~~fGv~L~~l~-~~~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va 80 (216)
T 1pbw_A 4 DVEQQALTLPDLA-EQFAPPDIAPPLLIKLVEAI-EKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLA 80 (216)
T ss_dssp --------CCCHH-HHCCTTSCSCHHHHHHHHHH-HHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHH
T ss_pred ccccCCCcHHHHH-hccCCCCCcCHHHHHHHHHH-HHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHH
Confidence 4579999999985 43344678999999999998 6799999999999999999 99999999974 22467999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc--------HHHHHHHHH--hcCHHHHHHHHHHHhhhhHhhhcccccCCChhh
Q 011672 187 GLIKAWFRELPQGVLDGLSPEQVLQCNT--------EEESVELVK--QLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256 (480)
Q Consensus 187 sLLK~fLReLPePLl~~~ly~~~i~~~~--------~e~~~~Ll~--~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~N 256 (480)
++||+|||+||+||||.++|+.|+.+.+ .+.++.++. +||+.|+.+|+||+.||++|++|++.|||++.|
T Consensus 81 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 160 (216)
T 1pbw_A 81 DAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARV 160 (216)
T ss_dssp HHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 9999999999999999999999998742 345778888 999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 257 IAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 257 LAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
||+||||+|+|++....... ...+.+|+.||+|+..+|+..
T Consensus 161 LAivf~P~Ll~~~~~~~~~~--~~~~~vve~LI~~~~~iF~~~ 201 (216)
T 1pbw_A 161 LSEIFSPMLFRFSAASSDNT--ENLIKVIEILISTEWNERQPA 201 (216)
T ss_dssp HHHHHHHHHHTCSSCCHHHH--HHHHHHHHHHHHTTC------
T ss_pred HHHHHhhhcCCCCCCchhhh--HHHHHHHHHHHhhhHHhcCCC
Confidence 99999999999876543322 677899999999999999765
No 10
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=318.26 Aligned_cols=221 Identities=20% Similarity=0.310 Sum_probs=161.1
Q ss_pred CCccceecccccccccccccCCCcccccc------CCCCCCCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHc
Q 011672 73 CPTNVRHITHVTFDRFNGFLGLPVEFEVE------VPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQ 146 (480)
Q Consensus 73 wp~~vr~v~~i~~~r~~~~lGlp~~~~~~------~~~~~~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~ 146 (480)
|...+.+++-+ .++.+..|++.+.... .........+++||+||+.+.......+..||.+|.+|+.|| +
T Consensus 20 ~~~~~~~~~~~--~~l~~~~gi~~k~~~~~~~~~~~~~~~~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~l-e- 95 (271)
T 3eap_A 20 WDQRLVRLALL--QHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL-E- 95 (271)
T ss_dssp SCHHHHHHHHH--HHHHHHHCCCC-------------------CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHH-G-
T ss_pred hhhchHHHHHH--HHHHHHhcccccCCCccccccccccCCCCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHH-H-
Confidence 55554444444 4566666765443211 111122345789999999985433333557999999999998 5
Q ss_pred CCCCCCCccccCCCchHHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhcc------HHHHH
Q 011672 147 GGLKAEGIFRINPENSQEEHVRDQLNRGIV-PDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNT------EEESV 219 (480)
Q Consensus 147 ~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~~~------~e~~~ 219 (480)
+|+.+|||||++|+..+|++|++.||+|.. ....|+|+||++||.|||+||+||||+++|+.|+.+.+ ...++
T Consensus 96 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~ 175 (271)
T 3eap_A 96 DHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL 175 (271)
T ss_dssp GGTTC--------CHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHH
T ss_pred hCCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 489999999999999999999999999874 35689999999999999999999999999999998743 23355
Q ss_pred HHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChh-----HHHHHHHHHHHHHHHHHHHHHH
Q 011672 220 ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPL-----TALMHAVQVMNLLKTLIMKTLR 294 (480)
Q Consensus 220 ~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~-----~~l~~~~~v~~~v~~LI~n~~~ 294 (480)
.++.+||+.|+.+|+||+.||++|+++++.|||+++|||+||||+|+|+++.. .........+.+|++||+|+..
T Consensus 176 ~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~ 255 (271)
T 3eap_A 176 LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASD 255 (271)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 67788999999999999999999999999999999999999999999987521 1223344556899999999999
Q ss_pred hhc
Q 011672 295 ERE 297 (480)
Q Consensus 295 if~ 297 (480)
+|.
T Consensus 256 IF~ 258 (271)
T 3eap_A 256 IGR 258 (271)
T ss_dssp TTC
T ss_pred HhC
Confidence 994
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=304.87 Aligned_cols=182 Identities=20% Similarity=0.276 Sum_probs=154.6
Q ss_pred CCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CCCCCCHHH
Q 011672 108 SASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VPDNIDVHC 184 (480)
Q Consensus 108 ~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~~~~Dvh~ 184 (480)
...+++||+||+.++.. .+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.|+.+. ..+.+|+|+
T Consensus 15 ~~~~~vFGv~L~~~~~~---~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~ 90 (228)
T 3kuq_A 15 YFQGSVFGVPLTVNVQR---TGQPLPQSIQQAMRYL-RNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYD 90 (228)
T ss_dssp BCTTSSTTCCHHHHHHH---HSSSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHH
T ss_pred CCCCCEECCchHHHHHH---cCCCCCHHHHHHHHHH-HHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHH
Confidence 34678999999988532 3567999999999998 6899999999999999999999999998753 235689999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhh
Q 011672 185 LAGLIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNI 257 (480)
Q Consensus 185 vAsLLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NL 257 (480)
||++||.|||+||+||||..+|+.|+.+. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 91 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 170 (228)
T 3kuq_A 91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170 (228)
T ss_dssp HHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHh
Confidence 99999999999999999999999999863 34678899999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChh--------------------HHHHHHHHHHHHHHHHHHHHH
Q 011672 258 AMVFAPNMTQMSDPL--------------------TALMHAVQVMNLLKTLIMKTL 293 (480)
Q Consensus 258 AiVFaPnLlr~~d~~--------------------~~l~~~~~v~~~v~~LI~n~~ 293 (480)
|+||||+|||+.... ..+.......+++.+||.++-
T Consensus 171 Aivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~ 226 (228)
T 3kuq_A 171 AVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECK 226 (228)
T ss_dssp HHHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999875321 112233455677888887764
No 12
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=1.3e-38 Score=309.29 Aligned_cols=188 Identities=15% Similarity=0.256 Sum_probs=146.8
Q ss_pred CCCccccchhhhhhccCC-CCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHH-HHhcCC----CC---CCC
Q 011672 110 SASVFGVSAESMQCSFDS-KGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRD-QLNRGI----VP---DNI 180 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~-~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~-~ld~g~----~~---~~~ 180 (480)
..++||+||... |..+. -...+|.+|.+|++|| +++|+++|||||++|+..+|++|++ .+|.+. .. ..+
T Consensus 15 ~~pvfgvpl~~~-~~~~~~l~~~~p~iv~~ci~~l-e~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~ 92 (231)
T 1f7c_A 15 REPVYNSNKDNQ-SEGTAQLDSIGFSIIKKCIHAV-ETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEW 92 (231)
T ss_dssp -----------------CCSSHHHHHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTS
T ss_pred CCCccCCcchhc-cccccccCCcCccHHHHHHHHH-HHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccc
Confidence 346999999875 44332 2345899999999998 7899999999999999999999987 578763 11 247
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCC
Q 011672 181 DVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMN 253 (480)
Q Consensus 181 Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMt 253 (480)
|+|+||++||+|||+||+||||+++|+.|+.+.+ ++.++.++.+||+.|+.+|+||+.||++|++|++.|||+
T Consensus 93 dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 172 (231)
T 1f7c_A 93 EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMT 172 (231)
T ss_dssp CHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred cHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999998732 456889999999999999999999999999999999999
Q ss_pred hhhhHHhhhcccCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011672 254 ARNIAMVFAPNMTQMSDP-LTALMHAVQVMNLLKTLIMKTLREREET 299 (480)
Q Consensus 254 a~NLAiVFaPnLlr~~d~-~~~l~~~~~v~~~v~~LI~n~~~if~e~ 299 (480)
+.|||+||||+|+|++.. ...+.+....+.+|+.||+|+..+|.+.
T Consensus 173 ~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~ 219 (231)
T 1f7c_A 173 VANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTV 219 (231)
T ss_dssp HHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999998753 2344556667789999999999999754
No 13
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=291.40 Aligned_cols=177 Identities=19% Similarity=0.329 Sum_probs=155.2
Q ss_pred chhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCC---CCC-CHHHHHHHHHHH
Q 011672 117 SAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVP---DNI-DVHCLAGLIKAW 192 (480)
Q Consensus 117 pLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~---~~~-Dvh~vAsLLK~f 192 (480)
.|+++ +. ..+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|... ..+ |+|+||++||+|
T Consensus 5 ~L~~~-~~--~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~f 80 (201)
T 2ovj_A 5 MLADF-VS--QTSPMIPSIVVHCVNEI-EQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDF 80 (201)
T ss_dssp CGGGG-CC--SSSSCCCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHH
T ss_pred cHHHH-hc--ccCCCCChHHHHHHHHH-HHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHH
Confidence 46665 22 35778999999999998 689999999999999999999999999998532 344 999999999999
Q ss_pred HHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhccc
Q 011672 193 FRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNM 265 (480)
Q Consensus 193 LReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnL 265 (480)
||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++ +.|||+++|||+||||+|
T Consensus 81 lreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~l 159 (201)
T 2ovj_A 81 LRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTI 159 (201)
T ss_dssp HHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhh
Confidence 999999999999999999873 235688899999999999999999999999996 689999999999999999
Q ss_pred CCCCC----hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011672 266 TQMSD----PLTALMHAVQVMNLLKTLIMKTLREREE 298 (480)
Q Consensus 266 lr~~d----~~~~l~~~~~v~~~v~~LI~n~~~if~e 298 (480)
+|++. +...+.+....+.+|+.||+|+.++|..
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 160 VAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp TCCSSSSCCHHHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 98642 3456677888889999999999888865
No 14
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=305.88 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=138.4
Q ss_pred CCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 011672 109 ASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGL 188 (480)
Q Consensus 109 ~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~~~Dvh~vAsL 188 (480)
+..++||+||+.++.+ ......||.+|.+|+++| +++|+++|||||++|+. ||+.++. ...+.+|+|+||++
T Consensus 18 ~~~~vFGv~L~~l~~~-~~~~~~vP~iv~~~i~~l-~~~Gl~~eGIfR~sG~~-----lr~~~~~-~dl~~~dvh~va~l 89 (214)
T 2xs6_A 18 LYFQSMGLTLPDLPEQ-FSPPDVAPPLLVKLVEAI-ERTGLDSESHYRPELPA-----PRTDWSL-SDVDQWDTAALADG 89 (214)
T ss_dssp -------CCCCCHHHH-CCTTCCSCHHHHHHHHHH-HHHCTTCSGGGCCSCCC-----CCCCCCC-TTGGGCCHHHHHHH
T ss_pred CCCcccCcCHHHHHHh-hCCCCCCCHHHHHHHHHH-HHhCCCCCCCeeeCHHH-----HHhcccc-CCCccCCHHHHHHH
Confidence 4567999999998542 233457999999999998 78999999999999999 4432211 12245799999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhcc----HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcc
Q 011672 189 IKAWFRELPQGVLDGLSPEQVLQCNT----EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPN 264 (480)
Q Consensus 189 LK~fLReLPePLl~~~ly~~~i~~~~----~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPn 264 (480)
||+|||+||+||||.++|+.|+++.+ .+.+..++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 169 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPL 169 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhh
Confidence 99999999999999999999998743 12344789999999999999999999999999999999999999999999
Q ss_pred cCCCCCh----------hHHHHHHHHHHHHHHHHHHHHHHh
Q 011672 265 MTQMSDP----------LTALMHAVQVMNLLKTLIMKTLRE 295 (480)
Q Consensus 265 Llr~~d~----------~~~l~~~~~v~~~v~~LI~n~~~i 295 (480)
|+|+++. ...+.+....+.+|+.||.|++-+
T Consensus 170 Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n~ife 210 (214)
T 2xs6_A 170 LLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLEE 210 (214)
T ss_dssp HHC------------------CCTTHHHHHHHHHHHHHHHC
T ss_pred hcCCcccccccccccchhhhHHhHHHHHHHHHHHHhhhccc
Confidence 9998763 344555667789999999876433
No 15
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=9.4e-36 Score=315.72 Aligned_cols=183 Identities=20% Similarity=0.303 Sum_probs=161.5
Q ss_pred CCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCC---CC---CCCCHH
Q 011672 110 SASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGI---VP---DNIDVH 183 (480)
Q Consensus 110 ~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~---~~---~~~Dvh 183 (480)
...+||++|+.++.. .+..||.+|.+|+++| +++|+.+|||||++|+..+|++|++.||++. .. ...|+|
T Consensus 266 ~~~vFG~~L~~~~~~---~~~~vP~iv~~~i~~l-e~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~ 341 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKA---HTTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 341 (463)
T ss_dssp CCCCTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHH
T ss_pred cccccccccchhhhc---cCCCCCeeHHHHHHHH-HhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcc
Confidence 357999999998542 2568999999999998 7899999999999999999999999999842 11 235999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhh
Q 011672 184 CLAGLIKAWFRELPQGVLDGLSPEQVLQCN-------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARN 256 (480)
Q Consensus 184 ~vAsLLK~fLReLPePLl~~~ly~~~i~~~-------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~N 256 (480)
+||++||+|||+||+||||.++|+.|+++. +++.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|
T Consensus 342 ~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 421 (463)
T 3cxl_A 342 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 421 (463)
T ss_dssp HHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred hhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 999999999999999999999999999873 2456888999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672 257 IAMVFAPNMTQMSD--PLTALMHAVQVMNLLKTLIMKTLRER 296 (480)
Q Consensus 257 LAiVFaPnLlr~~d--~~~~l~~~~~v~~~v~~LI~n~~~if 296 (480)
||+||||+|+++++ +...+.+....+.+|++||+|+..+|
T Consensus 422 LAivf~P~Ll~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 422 LGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHHHHCCCCCSCTTGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999999999865 34556677777899999999998876
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=8.3e-35 Score=300.42 Aligned_cols=160 Identities=17% Similarity=0.242 Sum_probs=138.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHhCCCCCCCCCCHHH
Q 011672 130 NSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD-NIDVHCLAGLIKAWFRELPQGVLDGLSPEQ 208 (480)
Q Consensus 130 ~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~-~~Dvh~vAsLLK~fLReLPePLl~~~ly~~ 208 (480)
..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|.... ..|+|++|++||+|||+||+||||+.+|+.
T Consensus 197 ~~iP~~v~~~i~~l-~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~dvh~va~lLK~fLReLPePLi~~~ly~~ 275 (366)
T 3qis_A 197 LQVPKEIWLLVDHL-FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQR 275 (366)
T ss_dssp CSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCCSCHHHHHHHHHHHHHHCSSCSSCHHHHHH
T ss_pred CCcChHHHHHHHHH-HhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 47999999999998 6799999999999999999999999999997653 459999999999999999999999999999
Q ss_pred HHhhcc-HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHH---HHHHHHHHHH
Q 011672 209 VLQCNT-EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTA---LMHAVQVMNL 284 (480)
Q Consensus 209 ~i~~~~-~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~---l~~~~~v~~~ 284 (480)
|+++.+ .+.++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||+||||+|||+++.... +....+++++
T Consensus 276 ~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~~~~~~~~~~~~~v~f 355 (366)
T 3qis_A 276 CLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMARQTPSDRQRAIQF 355 (366)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--------CHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcchhhhhHHHHHHHHHH
Confidence 999854 456888999999999999999999999999999999999999999999999999865322 2233455555
Q ss_pred HHHHHH
Q 011672 285 LKTLIM 290 (480)
Q Consensus 285 v~~LI~ 290 (480)
|..++.
T Consensus 356 i~~fL~ 361 (366)
T 3qis_A 356 LLGFLL 361 (366)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 544443
No 17
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=91.76 E-value=0.045 Score=37.51 Aligned_cols=29 Identities=45% Similarity=0.897 Sum_probs=24.9
Q ss_pred cCCCCccceeccccccccccc-ccCCCccc
Q 011672 70 EIGCPTNVRHITHVTFDRFNG-FLGLPVEF 98 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~~-~lGlp~~~ 98 (480)
+|++|++++|+.|+.++...+ +.|+|.+.
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW 30 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQW 30 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHH
Confidence 589999999999999998777 78888654
No 18
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=91.07 E-value=0.073 Score=36.70 Aligned_cols=29 Identities=41% Similarity=0.871 Sum_probs=20.4
Q ss_pred cCCCCccceeccccccccccc-ccCCCccc
Q 011672 70 EIGCPTNVRHITHVTFDRFNG-FLGLPVEF 98 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~~-~lGlp~~~ 98 (480)
+||+|++++|+.||.++...+ +.|+|.+-
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W 30 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQW 30 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHH
Confidence 589999999999999998766 77877554
No 19
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=83.48 E-value=0.45 Score=32.47 Aligned_cols=30 Identities=40% Similarity=0.803 Sum_probs=24.5
Q ss_pred cCCCCccceeccccccccccc-ccCCCcccc
Q 011672 70 EIGCPTNVRHITHVTFDRFNG-FLGLPVEFE 99 (480)
Q Consensus 70 ~igwp~~vr~v~~i~~~r~~~-~lGlp~~~~ 99 (480)
+|+.|++++|+.|+.++.-.+ +.|+|.+-+
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~ 31 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQ 31 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGT
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHH
Confidence 589999999999999986654 788886643
No 20
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=83.09 E-value=0.3 Score=39.56 Aligned_cols=58 Identities=26% Similarity=0.461 Sum_probs=34.8
Q ss_pred cccCCCCccceeccccccccccc-ccCCCccccccCCCCCCCCCCCccccchhhhhhccCCCCCCCcHHHHHHHHH
Q 011672 68 NMEIGCPTNVRHITHVTFDRFNG-FLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQER 142 (480)
Q Consensus 68 ~~~igwp~~vr~v~~i~~~r~~~-~lGlp~~~~~~~~~~~~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~ 142 (480)
.++||+|++++|+.||.++...+ +.|+|.+-+.... -=|++-+++. .-|.+|..++++
T Consensus 3 ~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~---------~sGIs~~e~~--------~np~~v~dvl~f 61 (80)
T 1f3m_A 3 RPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ---------TSNITKSEQK--------KNPQAVLDVLEF 61 (80)
T ss_dssp ------CCSSEEEEEEEEETTTTEEESCCHHHHHHHH---------TSCCCHHHHH--------HCHHHHHHHHHH
T ss_pred CCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHH---------HcCCCHHHHH--------HCHHHHHHHHHH
Confidence 47899999999999999988766 7788866543221 1244444442 157788888775
No 21
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=78.14 E-value=0.95 Score=34.42 Aligned_cols=32 Identities=34% Similarity=0.738 Sum_probs=25.5
Q ss_pred cccccCCCCccceeccccccccccccc--CCCcc
Q 011672 66 VHNMEIGCPTNVRHITHVTFDRFNGFL--GLPVE 97 (480)
Q Consensus 66 ~~~~~igwp~~vr~v~~i~~~r~~~~l--Glp~~ 97 (480)
...+.|+-|++++|+.||-++.-.+|. |+|.+
T Consensus 4 ~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~ 37 (59)
T 1cee_B 4 ISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPD 37 (59)
T ss_dssp CCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHH
T ss_pred CCCCcccCCCCCCCcceeccCCCCCcccCCCCHH
Confidence 456899999999999999888766655 66654
No 22
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=43.06 E-value=5.1 Score=40.64 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=0.0
Q ss_pred ccccccccccccCCC
Q 011672 81 THVTFDRFNGFLGLP 95 (480)
Q Consensus 81 ~~i~~~r~~~~lGlp 95 (480)
+.++|.+ + ||+.
T Consensus 320 ~~~~~~~--~-~~~~ 331 (358)
T 2pk2_A 320 CQLCFLR--S-LGID 331 (358)
T ss_dssp ---------------
T ss_pred cHHHhcc--c-ccee
Confidence 5666665 2 7774
No 23
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=45.29 E-value=6.4 Score=28.13 Aligned_cols=6 Identities=50% Similarity=1.154 Sum_probs=2.2
Q ss_pred CCCCCC
Q 011672 10 GSGCAG 15 (480)
Q Consensus 10 ~~~~~~ 15 (480)
|||.||
T Consensus 25 gggsgg 30 (52)
T 2lqh_B 25 GGGSGG 30 (52)
Confidence 333333
No 24
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=25.88 E-value=27 Score=20.90 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 011672 10 GSGCAGGDG 18 (480)
Q Consensus 10 ~~~~~~~~g 18 (480)
||.|++|+|
T Consensus 10 g~s~~sg~g 18 (21)
T 3u85_B 10 GTTGGGGGG 18 (26)
T ss_pred CcccCCCcc
Confidence 344444443
No 25
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=21.51 E-value=93 Score=25.00 Aligned_cols=33 Identities=6% Similarity=0.244 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 011672 160 ENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFR 194 (480)
Q Consensus 160 ~~~~I~~Lr~~ld~g~~~~~~Dvh~vAsLLK~fLR 194 (480)
...+|++||+++..|.+ .+|+..||.-|-.||+
T Consensus 56 r~~kV~~iK~aI~~GtY--~vd~~~iA~kml~~~~ 88 (88)
T 1rp3_B 56 LEKKVKELKEKIEKGEY--EVSDEKVVKGLIEFFT 88 (88)
T ss_dssp HHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHhC
Confidence 45799999999999986 5688989887777764
No 26
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=20.18 E-value=1e+02 Score=29.85 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHH-----HhhccHHHHHHHHHhcCHHHHHHHH
Q 011672 160 ENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQV-----LQCNTEEESVELVKQLKPTEAALLN 234 (480)
Q Consensus 160 ~~~~I~~Lr~~ld~g~~~~~~Dvh~vAsLLK~fLReLPePLl~~~ly~~~-----i~~~~~e~~~~Ll~~LP~~n~~lL~ 234 (480)
+...|..+.++|.-. .+|++.|-.+||.-=..+++- +-+.+ +...+-+....+..++.+.....+.
T Consensus 19 d~~~i~~~v~~f~Yq----GFDa~~vi~~l~erg~~~g~~-----~~~D~k~mIVl~ltRGNk~~km~~kms~~Gk~~~~ 89 (253)
T 4h5l_A 19 DSGTINAWVNEFAYQ----GFDPKRIVQLVKERGTAKGRD-----WKKDVKMMIVLNLVRGNKPEAMMKKMSEKGASIVA 89 (253)
T ss_dssp CHHHHHHHHHHHSBC----SSCHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHCSCHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhccchhh-----HHHhHHHHhhhhhhcCCCHHHHHHHhCHHHHHHHH
Confidence 556677777777653 478888888887633222211 11111 1112223356677888999999999
Q ss_pred HHHhhhhHhhhcccccCCChhhhHHhhhc
Q 011672 235 WAVDLMADVVEEEESNKMNARNIAMVFAP 263 (480)
Q Consensus 235 ~Li~fL~~V~~~s~~NKMta~NLAiVFaP 263 (480)
.|+....-+..+...+-.|+.-+|.+|++
T Consensus 90 ~Li~~Y~Lk~~~~~r~~lTLsRVAa~fa~ 118 (253)
T 4h5l_A 90 NLISVYQLKEGNPGRDTITLSRVSAAFVP 118 (253)
T ss_dssp HHHHHHTBCSSSCCTTCBCHHHHHHHTHH
T ss_pred HHHHHhCcccCCCCcccccHHHHHHHhhH
Confidence 99999998888888888899999999986
Done!